Query psy14648
Match_columns 154
No_of_seqs 107 out of 1069
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 17:03:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kbv_A Sodium/hydrogen exchang 98.8 2E-09 7E-14 58.5 1.4 25 67-91 2-26 (28)
2 1zcd_A Na(+)/H(+) antiporter 1 31.5 14 0.00047 31.0 0.9 79 10-88 264-348 (388)
3 2zy9_A Mg2+ transporter MGTE; 27.6 1.2E+02 0.0039 25.5 6.0 38 94-131 407-444 (473)
4 2lco_A WALP19-P8 peptide; prol 11.0 1.1E+02 0.0039 15.2 1.2 15 73-87 3-17 (26)
5 2knc_A Integrin alpha-IIB; tra 10.9 2.9E+02 0.0099 16.4 4.0 24 94-117 11-34 (54)
6 3dl8_C SECE; RECA-type ATPase 8.0 1.6E+02 0.0053 17.9 1.3 20 94-113 21-40 (65)
7 2zjs_E Preprotein translocase 7.7 1.5E+02 0.0051 17.6 1.1 20 94-113 22-41 (60)
8 3qrx_B Melittin; calcium-bindi 7.0 1.2E+02 0.004 15.3 0.3 17 113-129 8-24 (26)
9 2bec_B Sodium/hydrogen exchang 6.9 66 0.0022 18.2 -0.8 17 122-138 1-17 (43)
10 1ka8_A Putative P4-specific DN 5.6 1.7E+02 0.006 19.6 0.7 41 110-154 55-97 (100)
No 1
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=98.76 E-value=2e-09 Score=58.54 Aligned_cols=25 Identities=40% Similarity=0.741 Sum_probs=23.1
Q ss_pred hhhhhhhhhcchhHHHHHHHhhccc
Q psy14648 67 RMMFIMWFSGLRGAISYALSLHLEF 91 (154)
Q Consensus 67 ~~~~v~~~~GlRGaVslALal~l~~ 91 (154)
++|++|+|+|+||||++||++.+|.
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l~~ 26 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLLDK 26 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CceeEEEeecchHHHHHHHHHhccC
Confidence 5899999999999999999998764
No 2
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=31.49 E-value=14 Score=30.95 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhhcccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCchhhhhhhh-hcchhHHHH
Q psy14648 10 SKTLVFLITGLAIFSFR-HRVEPALVIWSLILCLVGRACNIFPLAILVNRFR----EHQITRRMMFIMWF-SGLRGAISY 83 (154)
Q Consensus 10 ~e~~IFillGl~l~~~~-~~~~~~~ii~~~v~~~vaR~v~v~~~~~~~~~~~----~~~i~~~~~~v~~~-~GlRGaVsl 83 (154)
.=-|-|...|+++.... ...+........+..+++.++.++..+++.-+.+ +++.+|++..-+++ +|.||.+++
T Consensus 264 lPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL 343 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI 343 (388)
T ss_dssp HHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred HHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHH
Confidence 33445888999985432 1221111112234458888888888777765443 35678888866554 678999998
Q ss_pred HHHhh
Q psy14648 84 ALSLH 88 (154)
Q Consensus 84 ALal~ 88 (154)
-.+..
T Consensus 344 ~Ia~l 348 (388)
T 1zcd_A 344 FIASL 348 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=27.63 E-value=1.2e+02 Score=25.49 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCc
Q psy14648 94 ETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQ 131 (154)
Q Consensus 94 ~~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~ 131 (154)
+.-......++.++++..-+.|..+|.+++++|+++..
T Consensus 407 ~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~ 444 (473)
T 2zy9_A 407 PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPAL 444 (473)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 33445566666666666667799999999999998875
No 4
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=10.97 E-value=1.1e+02 Score=15.15 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=8.2
Q ss_pred hhhcchhHHHHHHHh
Q psy14648 73 WFSGLRGAISYALSL 87 (154)
Q Consensus 73 ~~~GlRGaVslALal 87 (154)
||-.+--+.++|+++
T Consensus 3 wwlalapalalalal 17 (26)
T 2lco_A 3 WWLALAPALALALAL 17 (26)
T ss_pred hHHHHhHHHHHHHHH
Confidence 444455556666655
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.89 E-value=2.9e+02 Score=16.40 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhc
Q psy14648 94 ETRHVIITSTLIIVLVTTLVFGGS 117 (154)
Q Consensus 94 ~~~~~i~~~t~~vVl~Tl~vqG~t 117 (154)
|.--.+.....+..++++++..+-
T Consensus 11 p~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667777777777776553
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=7.98 E-value=1.6e+02 Score=17.88 Aligned_cols=20 Identities=10% Similarity=0.501 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q psy14648 94 ETRHVIITSTLIIVLVTTLV 113 (154)
Q Consensus 94 ~~~~~i~~~t~~vVl~Tl~v 113 (154)
|.|+.....|..|+.++++.
T Consensus 21 Ptr~e~~~~T~vViv~v~i~ 40 (65)
T 3dl8_C 21 PSRELVVKATISVIIFSLAI 40 (65)
T ss_dssp -------CHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555544
No 7
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=7.67 E-value=1.5e+02 Score=17.58 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHhh
Q psy14648 94 ETRHVIITSTLIIVLVTTLV 113 (154)
Q Consensus 94 ~~~~~i~~~t~~vVl~Tl~v 113 (154)
|.|+.....|..|+.++++.
T Consensus 22 Ptr~e~~~~t~vViv~v~i~ 41 (60)
T 2zjs_E 22 PTREQVVEGTQAILLFTLAF 41 (60)
T ss_dssp SCSSSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 67777777776666666554
No 8
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=7.02 E-value=1.2e+02 Score=15.29 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=11.0
Q ss_pred hhhhcHHHHHHHhCCCC
Q psy14648 113 VFGGSTMPLMKILQTSS 129 (154)
Q Consensus 113 vqG~t~~~l~~~L~i~~ 129 (154)
+....+|+++.|.+-++
T Consensus 8 VLa~~LP~liSWiK~kr 24 (26)
T 3qrx_B 8 VLTTGLPALISWIKRKR 24 (26)
T ss_pred HHHccchHHHHHHHHHh
Confidence 34556788888876443
No 9
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=6.88 E-value=66 Score=18.20 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=2.1
Q ss_pred HHHhCCCCCcccccccc
Q psy14648 122 MKILQTSSNQKIGRRRR 138 (154)
Q Consensus 122 ~~~L~i~~~~~~~~~~~ 138 (154)
++||+++.++..+++++
T Consensus 1 V~~L~Vkr~~~~~~t~~ 17 (43)
T 2bec_B 1 VDLLAVKKKQETKRSIN 17 (43)
T ss_dssp -------------CCHH
T ss_pred CcceeeeccccccccHH
Confidence 36788888777666544
No 10
>1ka8_A Putative P4-specific DNA primase; winged helix, transferase; 2.95A {Enterobacteria phage P4} SCOP: a.4.5.20
Probab=5.65 E-value=1.7e+02 Score=19.64 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=25.3
Q ss_pred HHhhhhhcHHHHHHHhCCCCCcccccccccCCCccceeeccc-c-CC
Q psy14648 110 TTLVFGGSTMPLMKILQTSSNQKIGRRRRGRKGKTAISLSKT-K-EW 154 (154)
Q Consensus 110 Tl~vqG~t~~~l~~~L~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 154 (154)
|+--.|-.++..++-.+. +-.++-.+.+..|-+.++++ | +|
T Consensus 55 sl~~Fg~~l~~alke~g~----~y~kr~tk~g~~tNv~l~~~~~~~w 97 (100)
T 1ka8_A 55 SLKMFGLGLPVMLKEYGL----NYEKRHTKQGIQTNLTLKEESYGDW 97 (100)
T ss_dssp CHHHHHHHHHHHHHHTTC----CCCEEEETTEEEESEEECTHHHHHT
T ss_pred cHHHHHHHHHHHHHHhch----hhheeeccCCEEEcceecccccccc
Confidence 444567778888998883 33333345555556677776 4 55
Done!