Query psy14648
Match_columns 154
No_of_seqs 107 out of 1069
Neff 6.8
Searched_HMMs 13730
Date Fri Aug 16 17:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14648.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14648hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 22.0 1.1E+02 0.008 20.6 8.9 35 98-132 113-147 (173)
2 d2oi8a2 a.121.1.1 (A:87-216) P 17.1 36 0.0026 21.6 2.3 31 67-97 87-117 (130)
3 d1rkla_ f.23.30.1 (A:) Oligosa 15.2 50 0.0036 16.6 2.0 14 100-113 10-23 (36)
4 d1zk8a2 a.121.1.1 (A:78-182) T 12.1 1.2E+02 0.009 17.7 3.9 27 65-91 59-85 (105)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 6.4 34 0.0025 20.7 -0.9 30 95-124 14-43 (91)
6 d1ka8a_ a.4.5.20 (A:) P4 origi 5.4 87 0.0063 19.6 0.7 39 110-152 55-93 (100)
7 d1zud21 d.15.3.2 (2:2-66) Thia 5.3 2.1E+02 0.015 15.6 2.4 39 114-152 13-54 (65)
8 d2a6aa1 c.55.1.9 (A:1-103) Hyp 5.0 1.3E+02 0.0091 18.0 1.3 17 73-89 66-82 (103)
9 d1skyb1 a.69.1.1 (B:372-502) F 4.9 1.4E+02 0.01 18.9 1.5 19 62-80 55-73 (131)
10 d2axti1 f.23.37.1 (I:1-35) Pho 4.5 2.6E+02 0.019 13.8 2.4 17 100-116 7-23 (35)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=21.96 E-value=1.1e+02 Score=20.60 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHHHhCCCCCcc
Q psy14648 98 VIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQK 132 (154)
Q Consensus 98 ~i~~~t~~vVl~Tl~vqG~t~~~l~~~L~i~~~~~ 132 (154)
.....+..++...--+.|..+|-++|++|.+|...
T Consensus 113 ~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~a 147 (173)
T d2yvxa3 113 PVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALV 147 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Confidence 34445555555555556999999999999998753
No 2
>d2oi8a2 a.121.1.1 (A:87-216) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.12 E-value=36 Score=21.59 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=23.2
Q ss_pred hhhhhhhhhcchhHHHHHHHhhcccCchhhH
Q psy14648 67 RMMFIMWFSGLRGAISYALSLHLEFSDETRH 97 (154)
Q Consensus 67 ~~~~v~~~~GlRGaVslALal~l~~~~~~~~ 97 (154)
.......|+.+.|.|++-+...++....+.+
T Consensus 87 ~~~a~~~Ws~lHGlvsLei~G~l~~~~~d~~ 117 (130)
T d2oi8a2 87 LHRALSFWSRLHGVLSLELAGQFTGMGFDSA 117 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTSCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence 4456778999999999999887765543333
No 3
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.17 E-value=50 Score=16.57 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhh
Q psy14648 100 ITSTLIIVLVTTLV 113 (154)
Q Consensus 100 ~~~t~~vVl~Tl~v 113 (154)
+.++|+++..|+++
T Consensus 10 ~~i~fgi~mmtliv 23 (36)
T d1rkla_ 10 LAITFGIVMMTLIV 23 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHH
Confidence 45678888888876
No 4
>d1zk8a2 a.121.1.1 (A:78-182) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=12.11 E-value=1.2e+02 Score=17.72 Aligned_cols=27 Identities=11% Similarity=-0.172 Sum_probs=21.7
Q ss_pred CchhhhhhhhhcchhHHHHHHHhhccc
Q psy14648 65 TRRMMFIMWFSGLRGAISYALSLHLEF 91 (154)
Q Consensus 65 ~~~~~~v~~~~GlRGaVslALal~l~~ 91 (154)
+........|+.+.|-+++.+....+.
T Consensus 59 d~~~~a~~lWa~vHG~~~L~~~g~~~~ 85 (105)
T d1zk8a2 59 NALHATRGFRSICHGFASIEQQGGFGL 85 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred cHHHHHHHHHHHHHhHHHHHhcCCCCC
Confidence 445677889999999999998876653
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=6.40 E-value=34 Score=20.71 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhcHHHHHHH
Q psy14648 95 TRHVIITSTLIIVLVTTLVFGGSTMPLMKI 124 (154)
Q Consensus 95 ~~~~i~~~t~~vVl~Tl~vqG~t~~~l~~~ 124 (154)
..+++........++.++++|.....+.|.
T Consensus 14 i~~L~~~~~~i~~iv~v~V~~~~~~~~~ry 43 (91)
T d1fftb2 14 QRSLILTAFGLMLIVVIPAILMAVGFAWKY 43 (91)
T ss_dssp HHHHHHHHHHHTTTTTTHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 344444444444445555666655554443
No 6
>d1ka8a_ a.4.5.20 (A:) P4 origin-binding domain {Bacteriophage P4 [TaxId: 10680]}
Probab=5.41 E-value=87 Score=19.56 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.8
Q ss_pred HHhhhhhcHHHHHHHhCCCCCcccccccccCCCccceeecccc
Q psy14648 110 TTLVFGGSTMPLMKILQTSSNQKIGRRRRGRKGKTAISLSKTK 152 (154)
Q Consensus 110 Tl~vqG~t~~~l~~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (154)
|+--+|..++..++-.+.+= .++..+.+..|.+.||++.
T Consensus 55 sLt~Fg~~ip~~lkeyG~~y----~Krrtk~G~rtNv~l~dd~ 93 (100)
T d1ka8a_ 55 SLKMFGLGLPVMLKEYGLNY----EKRHTKQGIQTNLTLKEES 93 (100)
T ss_dssp CHHHHHHHHHHHHHHTTCCC----CEEEETTEEEESEEECTHH
T ss_pred cHHHHHHhhHHHHHHHHHHH----hhhhhcCceEeeeeeccch
Confidence 44456778899999888543 3444566666677887653
No 7
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=5.27 E-value=2.1e+02 Score=15.56 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=24.2
Q ss_pred hhhcHHHHHHHhCCCCCc---ccccccccCCCccceeecccc
Q psy14648 114 FGGSTMPLMKILQTSSNQ---KIGRRRRGRKGKTAISLSKTK 152 (154)
Q Consensus 114 qG~t~~~l~~~L~i~~~~---~~~~~~~~~~~~~~~~~~~~~ 152 (154)
.+.|+.-+++.++++.+. +....+-.|..-.++.|++.|
T Consensus 13 ~~~tl~~ll~~l~~~~~~vaV~vN~~ivpk~~~~~~~L~~gD 54 (65)
T d1zud21 13 AGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGD 54 (65)
T ss_dssp TTCBHHHHHHHHTCCCTTEEEEETTEECCGGGTTTCBCCTTC
T ss_pred CCCcHHHHHHHcCCCCCcEEEEECCEEcCHHHHhhccCCCCC
Confidence 467888999999987764 333344444444355665554
No 8
>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}
Probab=4.95 E-value=1.3e+02 Score=17.97 Aligned_cols=17 Identities=29% Similarity=0.342 Sum_probs=14.1
Q ss_pred hhhcchhHHHHHHHhhc
Q psy14648 73 WFSGLRGAISYALSLHL 89 (154)
Q Consensus 73 ~~~GlRGaVslALal~l 89 (154)
+|+|+|=++++|-++..
T Consensus 66 sfTglRig~s~akgla~ 82 (103)
T d2a6aa1 66 GLTGLRVGIATVVGLVS 82 (103)
T ss_dssp CHHHHHHHHHHHHHHHG
T ss_pred cchhHHHHHHHHHHHHH
Confidence 57899999998888864
No 9
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=4.94 E-value=1.4e+02 Score=18.91 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=17.1
Q ss_pred CCCCchhhhhhhhhcchhH
Q psy14648 62 HQITRRMMFIMWFSGLRGA 80 (154)
Q Consensus 62 ~~i~~~~~~v~~~~GlRGa 80 (154)
.|++..+|+++.|+|-.|-
T Consensus 55 sP~~v~eQv~iLyA~~~G~ 73 (131)
T d1skyb1 55 QPIPVEKQVLIIYALTRGF 73 (131)
T ss_dssp CCCCHHHHHHHHHHTTTTT
T ss_pred CCcCHHHHHHHHHHHhCCc
Confidence 6889999999999999884
No 10
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.48 E-value=2.6e+02 Score=13.79 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy14648 100 ITSTLIIVLVTTLVFGG 116 (154)
Q Consensus 100 ~~~t~~vVl~Tl~vqG~ 116 (154)
...+..+-+.++++.|.
T Consensus 7 ~Vy~vV~fFv~lFiFGF 23 (35)
T d2axti1 7 TVYIVVTFFVLLFVFGF 23 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHhh
Confidence 33444555677888775
Done!