RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14648
         (154 letters)



>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 24.2 bits (53), Expect = 3.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 132 KIGRRRRGRKGKT 144
           +I R+  GRKGK 
Sbjct: 7   RIQRQTSGRKGKG 19


>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
           gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 556

 Score = 24.9 bits (53), Expect = 4.8
 Identities = 7/34 (20%), Positives = 15/34 (44%)

Query: 41  CLVGRACNIFPLAILVNRFREHQITRRMMFIMWF 74
            L         L  +++RF+E +  R++  +  F
Sbjct: 212 NLSAGRAQTLVLGWIIDRFQESRERRKIAIVRDF 245


>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
          kinase) {Fungus (Penicillium chrysogenum) [TaxId:
          5076]}
          Length = 208

 Score = 24.0 bits (51), Expect = 9.6
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 46 ACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGA 80
          + NI   A  + R    ++  +    +W +GL  +
Sbjct: 1  STNITFHASALTRSERTELRNQRGLTIWLTGLSAS 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,849
Number of extensions: 21544
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 6
Length of query: 154
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 76
Effective length of database: 1,336,656
Effective search space: 101585856
Effective search space used: 101585856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.1 bits)