BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14653
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O70302|CIDEA_MOUSE Cell death activator CIDE-A OS=Mus musculus GN=Cidea PE=1 SV=2
Length = 217
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
RP+++ ++ R + GV+ASSL+E+ K D L T+ + ++LE DGT +D E++F TL
Sbjct: 35 RPFRVSNHDRSSRRGVMASSLQELISKTLDVLVITTGLVTLVLEEDGTVVDTEEFFQTLR 94
Query: 67 NNTTLMVLFDNEKWTPVKQFV 87
+NT M+L +KWTP ++V
Sbjct: 95 DNTHFMILEKGQKWTPGSKYV 115
>sp|O60543|CIDEA_HUMAN Cell death activator CIDE-A OS=Homo sapiens GN=CIDEA PE=1 SV=1
Length = 219
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
RP+++ ++ R + GV+ASSL+E+ K D L + + ++LE DGT +D E++F TL
Sbjct: 35 RPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG 94
Query: 67 NNTTLMVLFDNEKWTPVKQFV 87
+NT M+L +KW P Q V
Sbjct: 95 DNTHFMILEKGQKWMPGSQHV 115
>sp|Q9UHD4|CIDEB_HUMAN Cell death activator CIDE-B OS=Homo sapiens GN=CIDEB PE=1 SV=2
Length = 219
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
QRP+++ D+KR + G+ A++ +E+ KA + L + + ++LE DGT +D ED+F L
Sbjct: 35 QRPFRVCDHKRTIRKGLTAATRQELLAKALETLL-LNGVLTLVLEEDGTAVDSEDFFQLL 93
Query: 66 ENNTTLMVLFDNEKWTPVKQFV 87
E++T LMVL + W+P + V
Sbjct: 94 EDDTCLMVLQSGQSWSPTRSGV 115
>sp|O70303|CIDEB_MOUSE Cell death activator CIDE-B OS=Mus musculus GN=Cideb PE=1 SV=2
Length = 219
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
QRP+++ D+KR + G+ A+SL+E+ K + L + ++LE DGT +D ED+F L
Sbjct: 35 QRPFRVCDHKRTVRKGLTAASLQELLDKVLETLL-LRGVLTLVLEEDGTAVDSEDFFQLL 93
Query: 66 ENNTTLMVLFDNEKWTP 82
E++T LMVL + W+P
Sbjct: 94 EDDTCLMVLEQGQSWSP 110
>sp|Q96AQ7|CIDEC_HUMAN Cell death activator CIDE-3 OS=Homo sapiens GN=CIDEC PE=1 SV=1
Length = 238
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
RP ++ R + G++A SLE++ K +D L ++LE DGT ++ E+YF L
Sbjct: 43 RPCRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALA 102
Query: 67 NNTTLMVLFDNEKWTPVKQFVDAVDGSHHPLT 98
+T MVL +KW P + G+ HPL+
Sbjct: 103 GDTVFMVLQKGQKWQPPSE-----QGTRHPLS 129
>sp|Q3T191|CIDEB_BOVIN Cell death activator CIDE-B OS=Bos taurus GN=CIDEB PE=2 SV=1
Length = 219
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
QRP+++ D KR + G+ A++ +E+ KA + L S + ++LE DGT ++ E++F L
Sbjct: 35 QRPFRVCDNKRTTRKGLTAATRQELLDKALEALV-LSGALTLVLEEDGTTVESEEFFQLL 93
Query: 66 ENNTTLMVLFDNEKWTPVKQFV 87
E++T LMVL + W+P + V
Sbjct: 94 EDDTCLMVLELGQSWSPRRSGV 115
>sp|P56198|CIDEC_MOUSE Cell death activator CIDE-3 OS=Mus musculus GN=Cidec PE=1 SV=2
Length = 239
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 2 EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
E RP ++ R+ + G++A SLE++ K QD L ++LE DGT ++ E+Y
Sbjct: 38 ETPRARPCRVSTADRKVRKGIMAHSLEDLLNKVQDILKLKDKPFSLVLEEDGTIVETEEY 97
Query: 62 FCTLENNTTLMVLFDNEKWTP 82
F L +T MVL +KW P
Sbjct: 98 FQALAKDTMFMVLLKGQKWKP 118
>sp|F1MN90|CIDEC_BOVIN Cell death activator CIDE-3 OS=Bos taurus GN=CIDEC PE=2 SV=1
Length = 222
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 2 EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
E RP ++ R + G++ SLE++ K +D L ++LE DGT ++ E+Y
Sbjct: 23 EAPRARPCRVTTADRSVRKGIMVHSLEDLHVKVRDTLMLAYKPFFLVLEEDGTTVETEEY 82
Query: 62 FCTLENNTTLMVLFDNEKWTP 82
F +L ++T MVL +KW P
Sbjct: 83 FQSLADDTVFMVLHKGQKWQP 103
>sp|O00273|DFFA_HUMAN DNA fragmentation factor subunit alpha OS=Homo sapiens GN=DFFA PE=1
SV=1
Length = 331
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 13 DYKRERKVGVVASSLEEIKRKAQDKLS--NTSDNIKILLESDGTEIDEEDYFCTLENNTT 70
+Y RE+ GV AS LE+++ KA D L+ + + ++L DGT +D++DYF L +NT
Sbjct: 26 NYSREQH-GVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTK 84
Query: 71 LMVLFDNEKWT-----------PVKQF-VDAVD-GSHHPLTQLLSLLQEDIGQLSLLGGQ 117
+ L NEKW + F VD D G+ + L+ED+ + LL +
Sbjct: 85 FVALASNEKWAYNNSDGGTAWISQESFDVDETDSGAGLKWKNVARQLKEDLSSIILLSEE 144
Query: 118 ELELLSDMDPDNL 130
+L++L D +L
Sbjct: 145 DLQMLVDAPCSDL 157
>sp|Q5XI33|CIDEC_RAT Cell death activator CIDE-3 OS=Rattus norvegicus GN=Cidec PE=2 SV=1
Length = 238
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 2 EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61
E RP ++ R+ + G++A SLE++ K QD L ++LE DGT ++ E+Y
Sbjct: 38 ETPRARPCRVSTADRKVRKGIMAHSLEDLLGKVQDILKLKDKPFSLVLEEDGTIVETEEY 97
Query: 62 FCTLENNTTLMVLFDNEKW 80
F L +T MVL +KW
Sbjct: 98 FQALPRDTVFMVLQKGQKW 116
>sp|O54786|DFFA_MOUSE DNA fragmentation factor subunit alpha OS=Mus musculus GN=Dffa
PE=1 SV=2
Length = 331
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 7 RPYKIIDYKRER---KVGVVASSLEEIKRKAQDKLS--NTSDNIKILLESDGTEIDEEDY 61
RP K +R + GV ASSLEE++ KA + L+ + I ++L DGT +D++DY
Sbjct: 16 RPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDY 75
Query: 62 FCTLENNTTLMVLFDNEKW 80
F L +NT + L NEKW
Sbjct: 76 FLCLPSNTKFVALACNEKW 94
>sp|Q58CZ0|DFFB_BOVIN DNA fragmentation factor subunit beta OS=Bos taurus GN=DFFB PE=2
SV=1
Length = 341
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 9 YKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENN 68
+K+ E+K GV S EE+ RK +L ++ L DGTE+ DYF + +N
Sbjct: 11 FKLRSLHSEKKFGVAGRSCEEVLRKGCQRLQLPIPGSRLCLYEDGTELT-GDYFWSAPDN 69
Query: 69 TTLMVLFDNEKWTPVKQFVDAVDGSHHPLTQLLSLLQE 106
+ L++L + W + FV + ++ LS+ QE
Sbjct: 70 SELVLLTAGQTW---QGFVSDI-------SRFLSVFQE 97
>sp|O76075|DFFB_HUMAN DNA fragmentation factor subunit beta OS=Homo sapiens GN=DFFB PE=1
SV=1
Length = 338
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 10 KIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNT 69
K+ + RK GV S +E+ RK + ++ L DGTE+ EDYF ++ +N
Sbjct: 9 KLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELT-EDYFPSVPDNA 67
Query: 70 TLMVLFDNEKW----TPVKQFVDAVDGSHHPLTQLLSLLQE 106
L++L + W + +++F+ A H P L+ Q+
Sbjct: 68 ELVLLTLGQAWQGYVSDIRRFLSAF---HEPQVGLIQAAQQ 105
>sp|O54788|DFFB_MOUSE DNA fragmentation factor subunit beta OS=Mus musculus GN=Dffb PE=1
SV=1
Length = 344
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 19 KVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNE 78
K GV A S +E+ RK + ++ L DGTE+ +D F L N+ L++L E
Sbjct: 21 KFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGLPNDAELLLLTAGE 79
Query: 79 KW----TPVKQFVDAVDGSHHPLTQLLSLLQED 107
W + + +F+ + H + Q L D
Sbjct: 80 TWHGYVSDITRFLSVFNEPHAGVIQAARQLLSD 112
>sp|Q99N34|DFFB_RAT DNA fragmentation factor subunit beta OS=Rattus norvegicus GN=Dffb
PE=2 SV=1
Length = 349
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 19 KVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNE 78
K GV A S +E+ RK + ++ + DGTE+ +D F +L N++ L++L E
Sbjct: 21 KFGVAARSCQELLRKGCIRFQLPVPGSRLCMYEDGTEVT-DDCFPSLPNDSELLLLTAGE 79
Query: 79 KWTPVKQFVDAVDGSHHPLTQLLSLLQE 106
W G +T+LLS+ E
Sbjct: 80 TW----------HGYVSDITRLLSVFNE 97
>sp|A5ILI6|BUK_THEP1 Probable butyrate kinase OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=buk PE=3 SV=1
Length = 357
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 16/153 (10%)
Query: 17 ERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFD 76
ERK A +++ + RK ++ T + +KI++ G+ I C +N + V
Sbjct: 148 ERKSYSHALNIKAVLRKVSREMGKTPEEVKIVVAHLGSGIS----VCACKNGKIIDVNNA 203
Query: 77 NEKWT---------PVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSLLGGQEL-ELLSDMD 126
N++ PV V S H +L + G L+ LG ++L + L M+
Sbjct: 204 NDEGPFSIERTGELPVGDVVKTAYSSKHSAAELKEEFTKKGGLLAYLGTKDLRKALDSME 263
Query: 127 PDNLLDIIPDKMFLNQVKE--ASCRFLSDKRNA 157
++ + M KE C L DK +A
Sbjct: 264 TSRKAKLVVEAMAYQIAKEIGGMCAVLGDKPDA 296
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus
GN=Taf6 PE=2 SV=1
Length = 678
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 117 QELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDK---RNAQEALDLLKLYH 168
++L+L + + P + ++ + M + Q++E +C+ L+D+ R + A D LK H
Sbjct: 5 KKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMH 59
>sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens
GN=TOMM70A PE=1 SV=1
Length = 608
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 110 QLSLLGGQELELLSDMDPDNLLDIIPD----KMFLNQVKEA-----SCRFLSDKRNAQEA 160
Q LL Q+ + +D+DP N D+ K+ L+QV+EA C L + +A
Sbjct: 381 QQPLLSTQDFNMAADIDPQN-ADVYHHRGQLKILLDQVEEAVADFDECIRLRPESALAQA 439
Query: 161 LDLLKLYHKSYINNTNSNNDAS 182
LY ++Y N +S A+
Sbjct: 440 QKCFALYRQAYTGNNSSQIQAA 461
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus
norvegicus GN=Taf6 PE=2 SV=1
Length = 678
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 117 QELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDK---RNAQEALDLLKLYH 168
++L+L + + P + ++ + M + Q++E +C+ L+D+ R + A D LK H
Sbjct: 5 KKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMH 59
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens
GN=TAF6 PE=1 SV=1
Length = 677
Score = 30.4 bits (67), Expect = 7.4, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 117 QELELLSDMDPDNLLDIIPDKMFLNQVKEASCRFLSDK---RNAQEALDLLKLYH 168
++L+L + + P + ++ + M + Q++E +C+ L+D+ R + A D LK H
Sbjct: 5 KKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMH 59
>sp|Q8DPM2|GYRA_STRR6 DNA gyrase subunit A OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrA PE=3 SV=1
Length = 822
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 15 KRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVL 74
K ER ++ L+E+KRK DK ++L D I+E D TL N + L
Sbjct: 457 KPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRL 516
Query: 75 FDNEKWTPVKQFVDAVDGS 93
D +++T K+ V G+
Sbjct: 517 -DQDEFTAQKRGGRGVQGT 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,873,287
Number of Sequences: 539616
Number of extensions: 2899056
Number of successful extensions: 8869
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 8839
Number of HSP's gapped (non-prelim): 87
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)