Query psy14653
Match_columns 191
No_of_seqs 122 out of 178
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:14:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eel_A Cell death activator CI 100.0 1.4E-37 4.8E-42 234.5 8.6 82 3-84 6-87 (91)
2 1d4b_A CIDE B, human cell deat 100.0 5.8E-36 2E-40 235.9 6.7 83 3-86 32-114 (122)
3 1f2r_I Inhibitor of caspase-ac 100.0 1.5E-35 5E-40 226.8 7.7 82 2-84 14-98 (100)
4 1ibx_B Chimera of IGG binding 100.0 6.3E-35 2.2E-39 235.4 7.1 83 2-84 59-143 (145)
5 1v0d_A DNA fragmentation facto 100.0 1.3E-30 4.4E-35 232.5 -0.2 82 4-86 6-87 (329)
6 1iyr_A DFF45, DNA fragmentatio 91.8 0.12 4.1E-06 39.9 3.2 68 97-164 18-86 (111)
7 3n3k_B Ubiquitin; hydrolase, p 70.9 9.6 0.00033 25.3 5.4 37 25-63 24-60 (85)
8 1ndd_A NEDD8, protein (ubiquit 70.9 11 0.00037 24.3 5.5 34 25-60 21-54 (76)
9 2al3_A TUG long isoform; TUG U 69.3 5.3 0.00018 29.5 4.0 64 12-77 16-82 (90)
10 2kd0_A LRR repeats and ubiquit 69.1 10 0.00036 26.1 5.4 48 25-74 32-81 (85)
11 3a9j_A Ubiquitin; protein comp 68.2 13 0.00044 23.8 5.4 34 25-60 21-54 (76)
12 2faz_A Ubiquitin-like containi 67.4 14 0.00048 24.2 5.6 34 25-60 25-58 (78)
13 2dzi_A Ubiquitin-like protein 65.3 16 0.00053 24.0 5.5 34 25-60 28-61 (81)
14 3dbh_I NEDD8; cell cycle, acti 63.5 12 0.00042 25.0 4.7 36 25-62 33-68 (88)
15 3mtn_B UBA80, ubcep1, ubiquiti 63.5 15 0.00052 24.2 5.1 35 25-61 24-58 (85)
16 3phx_B Ubiquitin-like protein 63.4 16 0.00053 24.1 5.2 48 25-74 25-75 (79)
17 2bwf_A Ubiquitin-like protein 62.3 28 0.00097 22.4 7.2 33 25-59 24-56 (77)
18 1xr4_A Putative citrate lyase 60.8 7.2 0.00024 36.1 4.1 37 21-57 460-502 (509)
19 1sif_A Ubiquitin; hydrophobic 59.9 17 0.00057 25.0 5.0 47 25-73 30-78 (88)
20 3k9o_B Ubiquitin, UBB+1; E2-25 59.5 21 0.00071 24.4 5.5 48 25-74 22-72 (96)
21 1wgd_A Homocysteine-responsive 58.5 29 0.00098 23.9 6.1 49 24-74 29-83 (93)
22 3v6c_B Ubiquitin; structural g 58.4 19 0.00066 24.6 5.1 34 25-60 38-71 (91)
23 1wh3_A 59 kDa 2'-5'-oligoadeny 57.9 17 0.00059 24.3 4.7 46 25-72 28-75 (87)
24 2dnf_A Doublecortin domain-con 57.8 37 0.0013 25.1 6.9 75 4-82 10-93 (108)
25 2klc_A Ubiquilin-1; ubiquitin- 57.2 25 0.00087 24.9 5.7 34 25-60 45-78 (101)
26 4eew_A Large proline-rich prot 56.4 23 0.00079 23.9 5.2 48 25-74 38-87 (88)
27 1wxv_A BAG-family molecular ch 55.1 47 0.0016 22.6 8.3 49 25-75 32-83 (92)
28 1j8c_A Ubiquitin-like protein 54.2 31 0.0011 25.7 6.0 47 25-73 52-100 (125)
29 2kk8_A Uncharacterized protein 53.5 20 0.00067 24.7 4.5 33 25-59 31-64 (84)
30 1wy8_A NP95-like ring finger p 53.4 48 0.0016 22.2 7.3 35 24-60 29-63 (89)
31 4dwf_A HLA-B-associated transc 53.3 29 0.00099 23.4 5.3 50 25-76 26-77 (90)
32 1wx7_A Ubiquilin 3; ubiquitin- 52.7 56 0.0019 23.0 7.0 48 25-74 37-86 (106)
33 1yx5_B Ubiquitin; proteasome, 52.4 34 0.0012 23.7 5.6 34 25-60 21-54 (98)
34 1wju_A NEDD8 ultimate buster-1 52.3 35 0.0012 25.1 5.9 47 25-75 40-90 (100)
35 3m62_B UV excision repair prot 52.1 26 0.00091 25.0 5.1 54 25-80 22-78 (106)
36 1ip9_A BEM1 protein; ubiquitin 52.0 11 0.00039 27.6 3.1 70 3-74 7-83 (85)
37 1wf9_A NPL4 family protein; be 51.9 34 0.0012 24.6 5.7 75 9-83 10-102 (107)
38 2ojr_A Ubiquitin; lanthide-bin 51.8 37 0.0013 24.3 5.9 36 25-62 56-91 (111)
39 4fbj_B NEDD8; effector-HOST ta 51.6 30 0.001 23.6 5.2 34 25-60 21-54 (88)
40 2l7r_A Ubiquitin-like protein 49.6 21 0.00072 24.8 4.2 62 9-73 22-86 (93)
41 3m63_B Ubiquitin domain-contai 48.9 66 0.0022 22.8 6.8 48 25-74 48-97 (101)
42 1wgg_A Ubiquitin carboxyl-term 48.6 51 0.0017 23.2 6.1 52 24-78 27-80 (96)
43 4hcn_B Polyubiquitin, ubiquiti 47.7 30 0.001 24.1 4.7 47 25-73 43-91 (98)
44 1yqb_A Ubiquilin 3; structural 47.3 28 0.00094 24.7 4.6 47 25-73 42-90 (100)
45 1v5t_A 8430435I17RIK protein; 46.7 64 0.0022 22.1 6.3 54 24-77 27-83 (90)
46 2fnj_B Transcription elongatio 46.1 27 0.00094 26.5 4.6 58 25-84 22-89 (118)
47 2hj0_A Putative citrate lyase, 46.1 16 0.00054 34.0 3.8 37 21-57 464-506 (519)
48 2hj8_A Interferon-induced 17 k 45.5 28 0.00097 23.7 4.3 33 25-59 25-57 (88)
49 2kdi_A Ubiquitin, vacuolar pro 43.7 50 0.0017 24.0 5.6 34 25-60 30-63 (114)
50 2kjr_A CG11242; UBL, ubiquitin 43.1 59 0.002 23.1 5.8 31 24-54 37-67 (95)
51 2kan_A Uncharacterized protein 41.5 69 0.0024 22.3 5.9 47 25-73 35-84 (94)
52 1ttn_A DC-UBP, dendritic cell- 41.4 43 0.0015 23.8 4.8 48 25-74 44-93 (106)
53 1we6_A Splicing factor, putati 40.7 95 0.0033 22.0 7.2 56 16-73 41-100 (111)
54 3b08_A Polyubiquitin-C, ubiqui 40.2 58 0.002 23.5 5.5 49 25-75 21-72 (152)
55 2qmm_A UPF0217 protein AF_1056 39.5 27 0.00093 28.8 3.9 42 23-74 110-151 (197)
56 2pjh_A Protein NPL4, nuclear p 39.4 20 0.00068 24.9 2.6 43 9-51 7-50 (80)
57 2wyq_A HHR23A, UV excision rep 38.6 78 0.0027 20.7 5.6 47 25-73 26-77 (85)
58 1wx8_A Riken cDNA 4931431F19; 38.4 28 0.00095 23.9 3.3 47 25-73 37-85 (96)
59 2uyz_B Small ubiquitin-related 38.0 27 0.00094 22.9 3.1 33 25-59 24-56 (79)
60 1uel_A HHR23B, UV excision rep 37.9 97 0.0033 21.3 6.3 49 25-75 21-75 (95)
61 3a4r_A Nfatc2-interacting prot 37.8 93 0.0032 21.1 6.4 49 9-59 10-61 (79)
62 3rt3_B Ubiquitin-like protein 37.8 70 0.0024 23.7 5.7 51 25-75 23-76 (159)
63 3vdz_A Ubiquitin-40S ribosomal 36.1 76 0.0026 22.7 5.5 34 25-60 56-89 (111)
64 2kj6_A Tubulin folding cofacto 33.4 1E+02 0.0035 22.0 5.8 32 24-55 36-68 (97)
65 4ajy_B Transcription elongatio 32.3 84 0.0029 23.9 5.4 72 10-83 6-88 (118)
66 1we7_A SF3A1 protein; structur 31.3 82 0.0028 22.6 5.0 33 25-59 56-88 (115)
67 1wjn_A Tubulin-folding protein 30.9 70 0.0024 22.2 4.4 28 24-51 32-59 (97)
68 1wyw_B Ubiquitin-like protein 30.7 54 0.0018 22.8 3.8 48 10-59 25-74 (97)
69 1evs_A Oncostatin M; 4-helix b 30.2 55 0.0019 26.9 4.2 36 123-158 54-89 (187)
70 3goe_A DNA repair protein RAD6 30.1 45 0.0015 24.4 3.3 41 25-66 30-70 (82)
71 2bkf_A Zinc-finger protein NBR 29.7 1.3E+02 0.0044 22.0 5.7 58 7-65 7-70 (87)
72 1lfd_A Ralgds; RAL, effector i 29.6 57 0.0019 24.0 3.8 46 7-74 19-65 (87)
73 1k8r_B Protein kinase BYR2; si 29.0 1.9E+02 0.0065 21.9 7.0 68 10-77 4-79 (110)
74 3b08_A Polyubiquitin-C, ubiqui 28.7 1.1E+02 0.0039 21.9 5.5 47 25-73 97-145 (152)
75 1x1m_A Ubiquitin-like protein 28.5 1.6E+02 0.0053 20.8 7.0 51 24-76 44-100 (107)
76 2dzj_A Synaptic glycoprotein S 28.5 64 0.0022 22.4 3.9 40 24-63 33-73 (88)
77 4a3p_A Ubiquitin carboxyl-term 28.4 1.4E+02 0.0046 24.1 6.3 27 24-50 149-176 (217)
78 4dbg_A Ranbp-type and C3HC4-ty 27.8 1.2E+02 0.0042 22.3 5.5 49 25-75 47-99 (105)
79 1wm3_A Ubiquitin-like protein 27.3 73 0.0025 21.1 3.8 33 25-59 22-54 (72)
80 1u9l_A Transcription elongatio 26.5 27 0.00092 24.1 1.5 38 117-154 28-66 (70)
81 1t0y_A Tubulin folding cofacto 26.3 1.9E+02 0.0064 21.0 6.6 33 24-56 27-60 (122)
82 2ktr_A Sequestosome-1; autopha 25.9 81 0.0028 24.1 4.3 33 24-56 56-90 (117)
83 3aia_A UPF0217 protein MJ1640; 25.2 80 0.0027 26.2 4.5 42 23-74 121-162 (211)
84 3u30_A Ubiquitin, linear DI-ub 24.8 1.2E+02 0.004 22.9 5.1 49 25-75 41-92 (172)
85 3bwv_A Putative 5'(3')-deoxyri 24.8 18 0.00063 26.7 0.4 17 46-62 6-22 (180)
86 3jyu_A Ubiquitin carboxyl-term 24.4 78 0.0027 25.9 4.2 45 8-53 141-191 (231)
87 1rlf_A RLF, RLF-RBD; signal tr 24.1 84 0.0029 23.2 3.9 45 7-73 22-67 (90)
88 3l8h_A Putative haloacid dehal 23.8 25 0.00086 25.6 1.0 16 47-62 4-19 (179)
89 1wj6_A KIAA0049 protein, RSGI 23.5 1.7E+02 0.0058 22.0 5.5 69 7-76 15-94 (101)
90 2io0_B Small ubiquitin-related 23.3 93 0.0032 22.0 3.9 50 9-60 8-59 (91)
91 3mn1_A Probable YRBI family ph 23.0 21 0.00072 27.2 0.4 19 46-64 21-39 (189)
92 1uh6_A Ubiquitin-like 5; beta- 22.7 1.3E+02 0.0045 21.9 4.8 35 25-61 49-83 (100)
93 2i7d_A 5'(3')-deoxyribonucleot 22.3 24 0.00082 26.4 0.7 17 46-62 4-20 (193)
94 3kbb_A Phosphorylated carbohyd 21.9 30 0.001 25.7 1.1 15 47-61 4-18 (216)
95 1q92_A 5(3)-deoxyribonucleotid 21.7 23 0.00079 26.7 0.5 18 45-62 5-22 (197)
96 3rt3_B Ubiquitin-like protein 21.5 1.6E+02 0.0055 21.7 5.2 33 25-59 102-134 (159)
97 2qwv_A UPF0217 protein VC_A105 21.5 1E+02 0.0035 25.8 4.4 39 25-73 121-159 (208)
98 3b1l_X E3 ubiquitin-protein li 26.8 20 0.00068 23.3 0.0 33 25-59 21-53 (76)
99 3kcn_A Adenylate cyclase homol 20.7 50 0.0017 23.1 2.1 30 137-166 107-136 (151)
100 4gib_A Beta-phosphoglucomutase 20.4 28 0.00097 27.1 0.7 16 46-61 28-43 (250)
101 4g9b_A Beta-PGM, beta-phosphog 20.4 28 0.00097 27.0 0.7 15 47-61 8-22 (243)
102 1v6e_A Cytoskeleton-associated 20.3 2.2E+02 0.0074 19.5 5.3 31 25-55 29-60 (95)
103 1rax_A Protein (RA-domain of R 20.1 1.1E+02 0.0037 23.6 3.9 26 7-42 44-69 (115)
No 1
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=234.46 Aligned_cols=82 Identities=37% Similarity=0.653 Sum_probs=79.1
Q ss_pred CCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCcccc
Q psy14653 3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTP 82 (191)
Q Consensus 3 ~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p 82 (191)
++++|||||||++|++||||+|+||+||+.|||++|+|+..+++||||||||+|||||||+|||+||+||+|.+||+|+|
T Consensus 6 ~~~~kpfkV~~~~Rs~k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp~nT~lmvL~~ge~W~p 85 (91)
T 2eel_A 6 SGPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMP 85 (91)
T ss_dssp SSCCEEEEEECTTSCCCEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSCSSEEEEEEETTCCCCC
T ss_pred CCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCCCCCEEEEEcCCCccCC
Confidence 57889999999999999999999999999999999999877999999999999999999999999999999999999999
Q ss_pred cC
Q psy14653 83 VK 84 (191)
Q Consensus 83 ~~ 84 (191)
..
T Consensus 86 ~~ 87 (91)
T 2eel_A 86 SG 87 (91)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 2
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=100.00 E-value=5.8e-36 Score=235.86 Aligned_cols=83 Identities=36% Similarity=0.637 Sum_probs=79.0
Q ss_pred CCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCcccc
Q psy14653 3 EESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTP 82 (191)
Q Consensus 3 ~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p 82 (191)
++++|||||||++|++||||+|+||+||+.|||++|+++ .+++||||||||+|||||||+|||+||+||+|++||+|.|
T Consensus 32 ~~~~kPfKV~~~~Rs~k~GV~A~SL~EL~~K~~~~l~l~-~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~gq~W~p 110 (122)
T 1d4b_A 32 PPPQRPFRVCDHKRTIRKGLTAATRQELLAKALETLLLN-GVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSP 110 (122)
T ss_dssp SCCCEEEEEECSSSSCEEEEEECCSSTHHHHHHHHHSCC-SSCEEEETTTTEEECSTHHHHHSSSCCCCCEECSSCCCCC
T ss_pred CCCCCCEEEecCCCCeEEeEEcCCHHHHHHHHHHHhccC-CCcEEEEEeCCcEEechhHhhcCCCCCEEEEecCCCcccC
Confidence 577899999999999999999999999999999999995 6999999999999999999999999999999999999999
Q ss_pred cCCc
Q psy14653 83 VKQF 86 (191)
Q Consensus 83 ~~~~ 86 (191)
+...
T Consensus 111 ~~~~ 114 (122)
T 1d4b_A 111 TRSG 114 (122)
T ss_dssp CCCS
T ss_pred CCcc
Confidence 7643
No 3
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=100.00 E-value=1.5e-35 Score=226.78 Aligned_cols=82 Identities=38% Similarity=0.586 Sum_probs=75.9
Q ss_pred CCCCCCCeEEe-cCCCceEeeeecCcHHHHHHHHHhhhCCCC--CceeEEEccCCceeccchhcccCCCCeeEeeecCCC
Q psy14653 2 EEESQRPYKII-DYKRERKVGVVASSLEEIKRKAQDKLSNTS--DNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNE 78 (191)
Q Consensus 2 ~~~~~KPfKV~-n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~--~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~ge 78 (191)
+.+++|||||| |++|+ ||||+|+||+||+.|||++|+|+. .+++|||++|||+|||||||+|||+||+||+|++||
T Consensus 14 ~~~~~kPfkV~~~~~r~-k~GV~A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp~nT~lmvL~~ge 92 (100)
T 1f2r_I 14 DVRPLKPCLLRRNHSRD-QHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLPSNTKFVALACNE 92 (100)
T ss_dssp TSCCCEEEEEEETTEEE-EEEEEESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSCSCCEEEEECSSS
T ss_pred cCCCCCCEEEeeCCCcc-EEeEEcCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCCCCCEEEEEcCCC
Confidence 46788999999 66665 999999999999999999999975 369999999999999999999999999999999999
Q ss_pred cccccC
Q psy14653 79 KWTPVK 84 (191)
Q Consensus 79 kW~p~~ 84 (191)
+|.|..
T Consensus 93 ~W~p~~ 98 (100)
T 1f2r_I 93 KWTYND 98 (100)
T ss_dssp CCSCTT
T ss_pred ccCCCC
Confidence 999975
No 4
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=100.00 E-value=6.3e-35 Score=235.42 Aligned_cols=83 Identities=34% Similarity=0.544 Sum_probs=79.4
Q ss_pred CCCCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCC--ceeEEEccCCceeccchhcccCCCCeeEeeecCCCc
Q psy14653 2 EEESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD--NIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEK 79 (191)
Q Consensus 2 ~~~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~--~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gek 79 (191)
|.+++|||||||++|++||||+|+||+||+.|||++|+|+.+ +++|||++|||+|||||||+|||+||+||+|.+||+
T Consensus 59 E~~~~KPfKV~d~~Rs~KkGV~A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~tLp~nT~LmvL~~gek 138 (145)
T 1ibx_B 59 EIRTLKPCLLRRNYSREQHGVAASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFLCLPSNTKFVALASNEK 138 (145)
T ss_dssp SCSSCCCCBCBCSSCCSBCCCCCSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHHHSCSSCBEEEECSSCC
T ss_pred cccCCccEEEecCCCCeEEeEEcCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhhcCCCCCEEEEECCCCc
Confidence 467899999999999999999999999999999999999764 999999999999999999999999999999999999
Q ss_pred ccccC
Q psy14653 80 WTPVK 84 (191)
Q Consensus 80 W~p~~ 84 (191)
|.|+.
T Consensus 139 W~p~~ 143 (145)
T 1ibx_B 139 WAYNN 143 (145)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99975
No 5
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=99.95 E-value=1.3e-30 Score=232.46 Aligned_cols=82 Identities=27% Similarity=0.364 Sum_probs=1.6
Q ss_pred CCCCCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeeecCCCccccc
Q psy14653 4 ESQRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPV 83 (191)
Q Consensus 4 ~~~KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L~~gekW~p~ 83 (191)
+++|||||||++|++||||||+||+||+.|||++|+++..+++|||++|||+| |||||+|||+||+||+|.+||+|.|.
T Consensus 6 ~~~rPfKV~d~~Rs~kkGV~A~SL~EL~~K~~~kl~l~~~~~~LvLeeDGTeV-dEeYF~tLp~nT~LmvL~~gq~W~~~ 84 (329)
T 1v0d_A 6 RQPKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEV-TDDCFPGLPNDAELLLLTAGETWHGY 84 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEecCCCCccccEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEe-eHHHHhcCCCCCEEEEecCCCccccC
Confidence 57899999999999999999999999999999999998789999999999999 99999999999999999999999997
Q ss_pred CCc
Q psy14653 84 KQF 86 (191)
Q Consensus 84 ~~~ 86 (191)
..+
T Consensus 85 ~sD 87 (329)
T 1v0d_A 85 VSD 87 (329)
T ss_dssp CTT
T ss_pred cch
Confidence 644
No 6
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=91.78 E-value=0.12 Score=39.87 Aligned_cols=68 Identities=28% Similarity=0.316 Sum_probs=58.2
Q ss_pred hHHHHHHHhcccccccccCccchhhhcCCCcchHHhhcc-chHHHHHHHHHHhhHhhhHHHHHHHHHHH
Q psy14653 97 LTQLLSLLQEDIGQLSLLGGQELELLSDMDPDNLLDIIP-DKMFLNQVKEASCRFLSDKRNAQEALDLL 164 (191)
Q Consensus 97 ~~~l~~qL~~dl~~i~llse~dLq~L~d~~~~~La~~~~-~~~~~~~lqet~~r~L~~r~earqs~~LL 164 (191)
--.+..-||+-..--..||-+|||+...=+|.-||..|+ +..+.+.||.+|.+-|..|-|.=||..=|
T Consensus 18 sS~iL~~LKeK~aPElsLSsqdLElV~kedpkALa~aL~Wd~~kt~avqqAC~qELs~RlQQVQsL~SL 86 (111)
T 1iyr_A 18 ASHILTALREKQAPELSLSSQDLELVTKEDPKALAVALNWDIKKTETVQEACERELALRLQQTQSLHSL 86 (111)
T ss_dssp CHHHHHHHHTTCCTTTTSCHHHHHHHHTSCHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHGGGCCCSCC
T ss_pred HHHHHHHHccCCCccccccHHHHHHHHccCHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667789888888889999999999999999999996 57888999999999999998877765443
No 7
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=70.93 E-value=9.6 Score=25.27 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC 63 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~ 63 (191)
.+..+|+.+.++..+++.+..+|+ ..|...+|+.-+.
T Consensus 24 ~tV~~lK~~i~~~~~ip~~~qrL~--~~g~~L~d~~tL~ 60 (85)
T 3n3k_B 24 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLS 60 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETBEECCTTCBTT
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEE--ECCeECCCCCCHH
Confidence 489999999999999987555554 4788887664333
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=70.87 E-value=11 Score=24.25 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=26.6
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~ 54 (76)
T 1ndd_A 21 DKVERIKERVEEKEGIPPQQQRLIY--SGKQMNDEK 54 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCTTS
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEE--CCEECCCCC
Confidence 5789999999999999865666654 688886653
No 9
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=69.32 E-value=5.3 Score=29.54 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=45.9
Q ss_pred ecCCCceEeeeec-CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchh--cccCCCCeeEeeecCC
Q psy14653 12 IDYKRERKVGVVA-SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY--FCTLENNTTLMVLFDN 77 (191)
Q Consensus 12 ~n~~R~~k~GVaA-~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeY--F~tLp~nT~lm~L~~g 77 (191)
+-..|..+.-|.. .+|.|+++.||.+|+++. ..-.|...+..||---= |..||+|..|-+....
T Consensus 16 ~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~--~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 16 APNGRRHTVKVTPSTVLLQVLEDTCRRQDFNP--SEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CTTSCEEEECCCTTSBHHHHHHHHHHHTTCCG--GGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cCCCcEEEEEECCCCCHHHHHHHHHHHhCCCh--hhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 3344444455544 578999999999999974 45567788899974443 5568999999886543
No 10
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.09 E-value=10 Score=26.11 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 74 (191)
.+..+|+.+..+..+++....+|. ..|...+|+.-+.. +.++..+++.
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~l~l~ 81 (85)
T 2kd0_A 32 CTVKDLKSQLQPITNVLPRGQKLI--FKGKVLVETSTLKQSDVGSGAKLMLM 81 (85)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCEEE--ETTEECCTTCBTTTTTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHHCcChHHEEEE--ECCeECCCcCCHHHCCCCCCCEEEEE
Confidence 579999999999999997666765 46888866644443 3455555543
No 11
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=68.19 E-value=13 Score=23.84 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~ 54 (76)
T 3a9j_A 21 DTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGR 54 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCTTC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEE--CCeECCCCC
Confidence 5799999999999999865556554 688876653
No 12
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=67.38 E-value=14 Score=24.23 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.
T Consensus 25 ~tv~~lK~~i~~~~gip~~~qrL~~--~g~~L~d~~ 58 (78)
T 2faz_A 25 TKVEELRRKIQELFHVEPGLQRLFY--RGKQMEDGH 58 (78)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCTTC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEE--CCEECCCCC
Confidence 5899999999999999876666654 688776653
No 13
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.28 E-value=16 Score=23.97 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.
T Consensus 28 ~tV~~LK~~i~~~~~i~~~~qrL~~--~gk~L~d~~ 61 (81)
T 2dzi_A 28 ELVSTLKQLVSEKLNVPVRQQRLLF--KGKALADGK 61 (81)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEE--TTEECCTTS
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEE--CCeECCCCC
Confidence 6799999999999999976777765 587776553
No 14
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=63.53 E-value=12 Score=24.98 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYF 62 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF 62 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.-+
T Consensus 33 ~tV~~lK~~i~~~~gip~~~qrL~~--~G~~L~d~~tL 68 (88)
T 3dbh_I 33 DKVERIKERVEEKEGIPPQQQRLIY--SGKQMNDEKTA 68 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEE--TTEECCTTSBG
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEE--CCeECCCCCcH
Confidence 4789999999999999976666654 78877665433
No 15
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=63.47 E-value=15 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchh
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeY 61 (191)
.+..+|+.+.++..+++....+|+ ..|.+.+|+.-
T Consensus 24 ~tV~~lK~~i~~~~~i~~~~qrL~--~~g~~L~d~~t 58 (85)
T 3mtn_B 24 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRT 58 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCTTSB
T ss_pred CCHHHHHHHHHHHHCcChHHEEEE--ECCEECCCCCC
Confidence 579999999999999987666665 47888876643
No 16
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=63.40 E-value=16 Score=24.14 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccC--C-CCeeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL--E-NNTTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tL--p-~nT~lm~L 74 (191)
.+..+|+.+.+++.+++.+..+|+ ..|...+|+.-+..+ . ..|..+++
T Consensus 25 ~tV~~lK~~i~~~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 25 QTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred ChHHHHHHHHHhhcCCCHHHEEEE--ECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 578999999999999986555554 578888766433332 2 34444444
No 17
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=62.34 E-value=28 Score=22.40 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
.+..+|+.+.++..+++....+|. ..|...+|+
T Consensus 24 ~tV~~LK~~i~~~~~i~~~~qrL~--~~gk~L~d~ 56 (77)
T 2bwf_A 24 STVLQFKEAINKANGIPVANQRLI--YSGKILKDD 56 (77)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTT
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEE--ECCeEcCCC
Confidence 579999999999999986555654 468887665
No 18
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=60.76 E-value=7.2 Score=36.14 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=30.1
Q ss_pred eeecCcHHHHHHHHHhhhCCCCC------ceeEEEccCCceec
Q psy14653 21 GVVASSLEEIKRKAQDKLSNTSD------NIKILLESDGTEID 57 (191)
Q Consensus 21 GVaA~SL~EL~~Ka~~~l~i~~~------~~~LvLeeDGT~Vd 57 (191)
+|+-.+.+||++++...++++.. .+-+|-|.|||++|
T Consensus 460 ~iAh~~~e~L~~~a~~~~~~p~~~~~~~~~~~~~~~rd~~~~d 502 (509)
T 1xr4_A 460 GVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVID 502 (509)
T ss_dssp TCCCBCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECTTSCEEE
T ss_pred CCCcCCHHHHHHHHHHhhCCCccCCCCCeEEEEEEecCCcEEE
Confidence 34446899999999999998762 66788889999996
No 19
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=59.89 E-value=17 Score=24.99 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 73 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.-+. .+.++.++.+
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l 78 (88)
T 1sif_A 30 DTIENLKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL 78 (88)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCTTSBSGGGTCCTTCEEEE
T ss_pred ChHHHHHHHHHHHHCcChhhEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 5799999999999999976666654 588776653322 2344544443
No 20
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=59.49 E-value=21 Score=24.40 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCC-eeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENN-TTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~n-T~lm~L 74 (191)
.+..+|+.+.++..+++....+|+ ..|...+|+.-+.. +.++ |..|++
T Consensus 22 ~TV~~LK~~i~~~~gip~~~qrL~--~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 22 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHhhhCCChhHEEEE--ECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 478999999999999987555555 47888876643332 3334 455544
No 21
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.46 E-value=29 Score=23.87 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=35.2
Q ss_pred cCcHHHHHHHHHhhh--CCCCCceeEEEccCCceeccc----hhcccCCCCeeEeee
Q psy14653 24 ASSLEEIKRKAQDKL--SNTSDNIKILLESDGTEIDEE----DYFCTLENNTTLMVL 74 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l--~i~~~~~~LvLeeDGT~VddE----eYF~tLp~nT~lm~L 74 (191)
..+..+|+.+..+.+ +++.+..+|.. .|.+.+|+ +|+..+.++.++++.
T Consensus 29 ~~TV~~lK~~I~~~~~~~i~~~~QrLi~--~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 29 GWSVGHLKAHLSRVYPERPRPEDQRLIY--SGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp TSCHHHHHHHHHHHSTTCCCTTTCEEEE--TTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred CCcHHHHHHHHHHHhcCCCChHHeEEEE--CCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 358999999999998 99876667654 47777665 555455666666554
No 22
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=58.38 E-value=19 Score=24.60 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D~~ 71 (91)
T 3v6c_B 38 DTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGR 71 (91)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCTTC
T ss_pred CCHHHHHHHHHhhhCCChhhEEEEE--CCeECCCcC
Confidence 4799999999999999976666654 788876653
No 23
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.90 E-value=17 Score=24.30 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEe
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLM 72 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm 72 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.-+. .+.++..+.
T Consensus 28 ~tV~~lK~~i~~~~gi~~~~qrL~~--~Gk~L~d~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 28 SFILGLKQQIEDQQGLPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SBHHHHHHHHHHHTCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEE
T ss_pred ChHHHHHHHHHHHhCCChHHEEEEE--CCEEccCCCCHHHCCCCCCCEEE
Confidence 6899999999999999976666654 688776653333 233444443
No 24
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=57.78 E-value=37 Score=25.14 Aligned_cols=75 Identities=13% Similarity=0.214 Sum_probs=48.7
Q ss_pred CCCCCeEE---ecCCCce---Eeee---ecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeee
Q psy14653 4 ESQRPYKI---IDYKRER---KVGV---VASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVL 74 (191)
Q Consensus 4 ~~~KPfKV---~n~~R~~---k~GV---aA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L 74 (191)
+..+|.+| +|.++.. +.=| ...|++.|++...++++++...++=....||+.|.+=+-| .++-.+|+.
T Consensus 10 ~~~~pk~I~v~rNGD~~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl---~dg~~YVa~ 86 (108)
T 2dnf_A 10 PLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAEL---ENGQFYVAV 86 (108)
T ss_dssp CCCCCEEEEECBTTCSSSCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSC---CSSCBEEEE
T ss_pred CCCcceEEEEEeCCCCCCCCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHh---CCCCEEEEe
Confidence 34567666 4544432 1111 4689999999999999998643554445799999765544 366666665
Q ss_pred cCCCcccc
Q psy14653 75 FDNEKWTP 82 (191)
Q Consensus 75 ~~gekW~p 82 (191)
- .|+..+
T Consensus 87 g-~E~fk~ 93 (108)
T 2dnf_A 87 G-RDKFKK 93 (108)
T ss_dssp C-SSCCCC
T ss_pred C-CCccee
Confidence 4 466543
No 25
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=57.22 E-value=25 Score=24.91 Aligned_cols=34 Identities=18% Similarity=0.515 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++....+|+. .|.+.+|+.
T Consensus 45 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~ 78 (101)
T 2klc_A 45 SSVQQFKEEISKRFKSHTDQLVLIF--AGKILKDQD 78 (101)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEE--TTEEECTTC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEE--CCEECCCcC
Confidence 5899999999999999975666654 688886653
No 26
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=56.43 E-value=23 Score=23.85 Aligned_cols=48 Identities=13% Similarity=0.273 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 74 (191)
.+..+|+.+.++..+++...-+|+. .|...+|+.-+.. ++..|..|++
T Consensus 38 ~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~g~~i~lv~ 87 (88)
T 4eew_A 38 MNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVE 87 (88)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCTTSBGGGGTCTTEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE--CCEECCCCCcHHHcCCCCcEEEEEE
Confidence 4789999999999999875566654 7777766522211 2444555554
No 27
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=55.10 E-value=47 Score=22.63 Aligned_cols=49 Identities=8% Similarity=0.294 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch-hcc--cCCCCeeEeeec
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED-YFC--TLENNTTLMVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe-YF~--tLp~nT~lm~L~ 75 (191)
.++.+|+.+..+..+++....+|.. .|....|++ -+. .+.++..+++..
T Consensus 32 ~TV~~LK~~i~~~~gip~~~qrL~~--~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQKLIF--KGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEE--TTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEE--CCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 7889999999999999976677654 477776533 122 245666666543
No 28
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.25 E-value=31 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.422 Sum_probs=32.0
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 73 (191)
.+..+|+.+.+++.+++....+|++ .|.+++|+.-+.. +.++.++.+
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D~~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 52 SSVQQFKEAISKRFKSQTDQLVLIF--AGKILKDQDTLIQHGIHDGLTVHL 100 (125)
T ss_dssp CCHHHHHHHHHHHHCSCSSSEEEEE--TTEEESTTSCGGGTTCSSSEEEEE
T ss_pred CcHHHHHHHHHHHHCcCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence 5799999999999999876666654 5888866533332 334444443
No 29
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=53.51 E-value=20 Score=24.72 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCce-eccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTE-IDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~-VddE 59 (191)
.+..+|+.+..++.+++.+..+|.. .|.. .+|+
T Consensus 31 ~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~lL~D~ 64 (84)
T 2kk8_A 31 DTLLVVKQKIERSQHIPVSKQTLIV--DGIVILRED 64 (84)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCCSS
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEE--CCEEecCCc
Confidence 5789999999999999875666654 5776 6554
No 30
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.44 E-value=48 Score=22.19 Aligned_cols=35 Identities=9% Similarity=0.322 Sum_probs=27.6
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
-.+..+|+.+.+++.+++....+|++ .|...+|+.
T Consensus 29 ~~tV~~lK~~i~~~~gip~~~qrL~~--~gk~L~d~~ 63 (89)
T 1wy8_A 29 KATIEELRERVWALFDVRPECQRLFY--RGKQLENGY 63 (89)
T ss_dssp TCBHHHHHHHHHHHSCCCTTTEEEEE--TTEECCSSS
T ss_pred CCCHHHHHHHHHHHHCcChhhEEEEE--CCeECCCCC
Confidence 46889999999999999976667655 588776653
No 31
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=53.28 E-value=29 Score=23.43 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=34.3
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEeeecC
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMVLFD 76 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L~~ 76 (191)
.+..+|+.+.+++.+++....+|+. .|...+|+.-+.. ++..|..|+++.
T Consensus 26 ~tV~~lK~~i~~~~gip~~~qrLi~--~Gk~L~d~~tL~~~~i~g~~i~l~~~~ 77 (90)
T 4dwf_A 26 MNVKEFKEHIAASVSIPSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVERA 77 (90)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCTTSBGGGGTCTTEEEEEEECC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE--CCeECCCCCCHHHcCCCCcEEEEEecC
Confidence 4789999999999999875666654 6777766532221 255666666654
No 32
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.70 E-value=56 Score=23.01 Aligned_cols=48 Identities=10% Similarity=0.403 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~L 74 (191)
.+..+|+.+..+..+++....+|+. .|.+.+|+.-+. .+.++..+++.
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (106)
T 1wx7_A 37 CTIQQLKEEISQRFKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLV 86 (106)
T ss_dssp CCHHHHHHHHHHHHTCCTTTEEEEE--TTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEE--CCEECCCcCcHHHcCCCCCCEEEEE
Confidence 5799999999999999876666654 588876653222 24455554443
No 33
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=52.37 E-value=34 Score=23.67 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.
T Consensus 21 ~TV~~LK~~I~~~~gi~~~~qrL~~--~Gk~L~D~~ 54 (98)
T 1yx5_B 21 DTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGR 54 (98)
T ss_dssp CBHHHHHHHHHHHTCCCGGGEEEEE--TTEECCTTS
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEE--CCEECCCCC
Confidence 5799999999999999875666654 688886653
No 34
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=52.27 E-value=35 Score=25.10 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc----hhcccCCCCeeEeeec
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE----DYFCTLENNTTLMVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE----eYF~tLp~nT~lm~L~ 75 (191)
.+..+|+.+..+++++|..-.+|. .-|.+.+|+ +| .+.++..+|+|.
T Consensus 40 ~TV~~lK~kI~~k~gip~~qQrLI--~~GKiL~D~~TL~~y--~I~~gsti~vl~ 90 (100)
T 1wju_A 40 ITGRELRSKIAETFGLQENYIKIV--INKKQLQLGKTLEEQ--GVAHNVKAMVLE 90 (100)
T ss_dssp SBHHHHHHHHHHHTTCCSTTCEEE--ETTEECCTTSBHHHH--TCCSSEEEEEEC
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEE--eCCeECCCCCcHHHc--CCCCCCEEEEEE
Confidence 468999999999999997667775 236666554 33 466776667664
No 35
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=52.09 E-value=26 Score=25.03 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=34.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CC-CCeeEeeecCCCcc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LE-NNTTLMVLFDNEKW 80 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp-~nT~lm~L~~gekW 80 (191)
.+..+|+.+.++..+++....+|+. .|.+.+|+.-+.. +. ..|..|++.+....
T Consensus 22 ~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 22 NTILETKTKLAQSISCEESQIKLIY--SGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp SBHHHHHHHHHHTTTSCGGGCEEEE--TTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEE--CCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 4789999999999999876666654 6888776633222 33 34555566555443
No 36
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=51.95 E-value=11 Score=27.62 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=45.3
Q ss_pred CCCCCCeEEecCCCceEeeeecC---cHHHHHHHHHhhhCCCCCceeEEEc---cCCceeccch-hcccCCCCeeEeee
Q psy14653 3 EESQRPYKIIDYKRERKVGVVAS---SLEEIKRKAQDKLSNTSDNIKILLE---SDGTEIDEED-YFCTLENNTTLMVL 74 (191)
Q Consensus 3 ~~~~KPfKV~n~~R~~k~GVaA~---SL~EL~~Ka~~~l~i~~~~~~LvLe---eDGT~VddEe-YF~tLp~nT~lm~L 74 (191)
+|+..+.||-=+--..=+.|... ++++|..|-++++.+. ...++.+ -.|+++.+++ .=..+..|.+++++
T Consensus 7 ~pq~~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde~~g~~i~sD~dl~~aiqrn~KL~l~ 83 (85)
T 1ip9_A 7 TSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFDGSGEEIKTDSQVSNIIQAKLKISVH 83 (85)
T ss_dssp CCCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSSSCCSCCCSHHHHHHHHHTTCCEEEE
T ss_pred CCccCceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCCCCCCcccCHHHHHHHHHhcCeeEEe
Confidence 45556666632222223444433 6999999999999995 4666664 3677776544 44457888888775
No 37
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=51.89 E-value=34 Score=24.56 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=44.2
Q ss_pred eEEecCCCceEeeee--cCcHHHHHHHHHhhhCCCCCceeEEEccC-------C---ce---eccchhccc--C-CCCee
Q psy14653 9 YKIIDYKRERKVGVV--ASSLEEIKRKAQDKLSNTSDNIKILLESD-------G---TE---IDEEDYFCT--L-ENNTT 70 (191)
Q Consensus 9 fKV~n~~R~~k~GVa--A~SL~EL~~Ka~~~l~i~~~~~~LvLeeD-------G---T~---VddEeYF~t--L-p~nT~ 70 (191)
+||+..+...+.-|- ..++.+|+.|..++++++...-+|.+..- + .+ .+++.-+.. + +..+.
T Consensus 10 irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L 89 (107)
T 1wf9_A 10 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMV 89 (107)
T ss_dssp EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEE
T ss_pred EEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEE
Confidence 566666554444433 25999999999999999876666644211 0 11 122221221 2 56666
Q ss_pred EeeecCCCccccc
Q psy14653 71 LMVLFDNEKWTPV 83 (191)
Q Consensus 71 lm~L~~gekW~p~ 83 (191)
+|....+..+.++
T Consensus 90 ~l~~~~~~~~~~~ 102 (107)
T 1wf9_A 90 YLAYEGERTIRGS 102 (107)
T ss_dssp ECCCSSCCCCCCC
T ss_pred EEEeCCCCcccCC
Confidence 7777776666644
No 38
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=51.76 E-value=37 Score=24.33 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYF 62 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF 62 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.-+
T Consensus 56 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL 91 (111)
T 2ojr_A 56 DTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTL 91 (111)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEE--TTEECCSSCBT
T ss_pred CCHHHHHHHHHHHHCcCcccEEEEE--CCEECCCCCcH
Confidence 5799999999999999976666655 68888665433
No 39
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=51.61 E-value=30 Score=23.63 Aligned_cols=34 Identities=18% Similarity=0.473 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.
T Consensus 21 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~ 54 (88)
T 4fbj_B 21 DKVERIKERVEEKEGIPPQQQRLIY--SGKQMNDEK 54 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEE--TTEECCTTS
T ss_pred CCHHHHHHHHHHHHCcChhHEEEEE--CCeECCCCC
Confidence 4789999999999999976666654 687776653
No 40
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=49.58 E-value=21 Score=24.83 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=37.3
Q ss_pred eEEecCCCceEeeeec-CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEee
Q psy14653 9 YKIIDYKRERKVGVVA-SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMV 73 (191)
Q Consensus 9 fKV~n~~R~~k~GVaA-~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 73 (191)
+.|.. .+....-|-. .+..+|+.+.+++.+++.+..+|+. .|...+|+.-+. .+.++..+.+
T Consensus 22 I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 22 LFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL--AGAPLEDEATLGQCGVEALTTLEV 86 (93)
T ss_dssp EEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE--TTEECCTTSBHHHHTCCSSCEEEE
T ss_pred EEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 34454 3333333332 5799999999999999876666655 587776553222 2344444433
No 41
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=48.91 E-value=66 Score=22.79 Aligned_cols=48 Identities=8% Similarity=0.235 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~L 74 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.-+. .+.++.++.+.
T Consensus 48 ~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D~~tL~~~gI~~g~tI~lv 97 (101)
T 3m63_B 48 STVLQFKEAINKANGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLV 97 (101)
T ss_dssp SBHHHHHHHHHHHHSCCSTTCCEEE--TTEECCTTSBTTTTTCCTTEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEE--CCEECCCcCcHHHCCCCCCCEEEEE
Confidence 4789999999999999976677765 677776653222 23455555544
No 42
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.60 E-value=51 Score=23.19 Aligned_cols=52 Identities=10% Similarity=0.176 Sum_probs=35.8
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEeeecCCC
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMVLFDNE 78 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L~~ge 78 (191)
-.+..+|+.+..++.+++.+--+|. ..|...+|+ .+.. +.++..+|++..-+
T Consensus 27 ~~TV~~lK~~I~~~tgip~~~QkLi--~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 27 DEPPMVFKAQLFALTGVQPARQKVM--VKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp SSCHHHHHHHHHHHTCCCTTTSCCE--ETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CCcHHHHHHHHHHHHCcCHHHeEEE--ECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 3689999999999999997666664 478887665 4433 33566666654443
No 43
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=47.68 E-value=30 Score=24.13 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=31.8
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 73 (191)
.+..+|+.+.++..+++....+|+ ..|.+.+|+.-+.. +.++.++.+
T Consensus 43 ~TV~~LK~~I~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l 91 (98)
T 4hcn_B 43 DTIDNVKSKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 91 (98)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCTTCBSGGGTCCTTEEEEE
T ss_pred CcHHHHHHHHHHHhCCChhHEEEE--ECCEECCCCCcHHHCCCCCCCEEEE
Confidence 378999999999999987666665 47888766543332 344444443
No 44
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=47.28 E-value=28 Score=24.73 Aligned_cols=47 Identities=11% Similarity=0.399 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 73 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.-+. .+.++..+.+
T Consensus 42 ~TV~~LK~~I~~~~gip~~~QrLi~--~Gk~L~D~~tL~~ygI~~gstI~l 90 (100)
T 1yqb_A 42 CTIQQLKEEISQRFKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHL 90 (100)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEE--TTEECCTTSBHHHHTCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEE
Confidence 5799999999999999865666654 688876653222 2334444443
No 45
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=46.74 E-value=64 Score=22.13 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEc-cCCceeccchhccc--CCCCeeEeeecCC
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLE-SDGTEIDEEDYFCT--LENNTTLMVLFDN 77 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLe-eDGT~VddEeYF~t--Lp~nT~lm~L~~g 77 (191)
-.+..+|+.+..++.+++.+--+|..- ..|...+|+..+.. +.++..+|++..-
T Consensus 27 ~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 27 DDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp SSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 478999999999999999766666411 46777766644443 4577777776543
No 46
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=46.09 E-value=27 Score=26.51 Aligned_cols=58 Identities=14% Similarity=0.279 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cC--------CCCeeEeeecCCCcccccC
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TL--------ENNTTLMVLFDNEKWTPVK 84 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tL--------p~nT~lm~L~~gekW~p~~ 84 (191)
.+..+|+.|..++.+|+...-+|. ..|...+|+.=+. .+ ..-|..|+|+.|-.|.+..
T Consensus 22 dTV~~lK~kI~~~egIP~~qQrLi--~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr~~g~fe~l~ 89 (118)
T 2fnj_B 22 STVFELKRIVEGILKRPPEEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALR 89 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEBSSSCBCCCC
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEE--ECCeECCCCCCHHHcCcccccccCCCCCEEEEEecCCCceeeeE
Confidence 688999999999999997566664 4666665542211 12 3567888899888886653
No 47
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=46.07 E-value=16 Score=33.97 Aligned_cols=37 Identities=30% Similarity=0.377 Sum_probs=30.3
Q ss_pred eeecCcHHHHHHHHHhhhCCCCC------ceeEEEccCCceec
Q psy14653 21 GVVASSLEEIKRKAQDKLSNTSD------NIKILLESDGTEID 57 (191)
Q Consensus 21 GVaA~SL~EL~~Ka~~~l~i~~~------~~~LvLeeDGT~Vd 57 (191)
+|+-.+.+||++++...++++.. .+.++.+.|||+||
T Consensus 464 ~ia~~~~~~L~~~a~~~~~~~~~~~~~~~~~~~~~~rdg~~~~ 506 (519)
T 2hj0_A 464 KVPQLTIEELKEKAYAIVGNPQPIQYGDKIVALIEYRDGSLID 506 (519)
T ss_dssp SSCEECHHHHHHHHHHHHCSCCCCCEEEEEEEEEECTTSSEEE
T ss_pred CCCcccHHHHHHHHHHhhCCCcccCCCCceEEEEEecCCcEEE
Confidence 45557889999999999999762 56688889999995
No 48
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=45.49 E-value=28 Score=23.70 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
.+..+|+.+.++..+++....+|. ..|...+|+
T Consensus 25 ~TV~~LK~~I~~~~gip~~~qrL~--~~Gk~L~D~ 57 (88)
T 2hj8_A 25 QTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLEDQ 57 (88)
T ss_dssp SBHHHHHHHHHHHTCSCTTTEEEE--SSSSCCCTT
T ss_pred CcHHHHHHHHHHHhCCChhHEEEE--ECCEECCCC
Confidence 579999999999999997666665 468777665
No 49
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=43.66 E-value=50 Score=23.97 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=26.7
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.++..+++.+..+|+. .|...+|+.
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~ 63 (114)
T 2kdi_A 30 DTIDNVKSKIQDKEGIPPDQQRLIW--AGKQLEDGR 63 (114)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCTTC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEE--CCEECCCCC
Confidence 5799999999999999976666654 588876653
No 50
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.14 E-value=59 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=26.2
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEccCCc
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLESDGT 54 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT 54 (191)
..+..+|+.|...+.++|.+.-+|.+..+|.
T Consensus 37 ~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~ 67 (95)
T 2kjr_A 37 DLTVAQLKTKLEILTGGCAGTMKVQVFKGDT 67 (95)
T ss_dssp TCBHHHHHHHHHHHHCSCTTTEEEEEEETTE
T ss_pred cCHHHHHHHHHHHHHCcCHHHeEEEEecCCc
Confidence 3689999999999999998888888765565
No 51
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=41.50 E-value=69 Score=22.32 Aligned_cols=47 Identities=11% Similarity=0.253 Sum_probs=31.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc-hhcc--cCCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE-DYFC--TLENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE-eYF~--tLp~nT~lm~ 73 (191)
.+..+|+.+..++.+++.+..+|. ..|.+.+|+ .-+. .+.++..+.+
T Consensus 35 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~~tL~~ygI~~gstl~l 84 (94)
T 2kan_A 35 ETVSSLKDKIHIVENTPIKRMQLY--YSGIELADDYRNLNEYGITEFSEIVV 84 (94)
T ss_dssp CBHHHHHHHHHHHSSSCTTTEEEE--ETTEEECCTTSBHHHHTCCTTEEEEE
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEE--ECCEECCCCcccHHHCCCCCCCEEEE
Confidence 578999999999999987666665 458888666 2222 2445555444
No 52
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=41.41 E-value=43 Score=23.79 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEeee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMVL 74 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~L 74 (191)
.+..+|+.+.+.+.+++....+|+. .|...+|+.-+.. +.++..+.+.
T Consensus 44 ~TV~~LK~~I~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 44 DTVFHMKRRLHAAEGVEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp SHHHHHHHHHHHTTCCCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred CcHHHHHHHHHHHHCcCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEEE
Confidence 4689999999999999876677765 6888866643332 3344444433
No 53
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=40.68 E-value=95 Score=22.01 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=36.2
Q ss_pred CceEeeeec--CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEee
Q psy14653 16 RERKVGVVA--SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMV 73 (191)
Q Consensus 16 R~~k~GVaA--~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 73 (191)
+....-|-. .+..+|+.+.....+++.+..+|.+ .|.+.+|+.-+. .+.++..+++
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~D~~tL~~y~I~~g~~l~l 100 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG--KAGFLKDNMSLAHYNVGAGEILTL 100 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC--SSSBCCTTSBTTTTTCSSSCEEEE
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence 344455553 7899999999999999976677755 577765553222 2334444444
No 54
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=40.17 E-value=58 Score=23.50 Aligned_cols=49 Identities=22% Similarity=0.443 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCC-eeEeeec
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENN-TTLMVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~n-T~lm~L~ 75 (191)
.+..+|+.+.++..+++.+..+|.. .|...+|+.-+.. +.++ |..|+.+
T Consensus 21 ~tv~~lK~~i~~~~gip~~~q~L~~--~g~~L~d~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 21 DTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEE--CCeECcCcccHHHhccCCCCeeEEEee
Confidence 5799999999999999865556554 5877766533322 3344 4444444
No 55
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=39.50 E-value=27 Score=28.76 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=30.6
Q ss_pred ecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeee
Q psy14653 23 VASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVL 74 (191)
Q Consensus 23 aA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L 74 (191)
.-.||++|+.+..+. .-.++|.|||+-|..-+| +.|..||+=
T Consensus 110 ~~~sle~ll~e~~~~------~~v~~L~E~G~~i~~~~~----~~~~~fvlG 151 (197)
T 2qmm_A 110 SRKGLEELIEELSEK------YSIIYLKEDGVDISNAQL----PPNPLFVIG 151 (197)
T ss_dssp ECCCHHHHHHHHHHH------SEEEEEEEEEEEGGGSCC----CSSEEEEEE
T ss_pred ECCCHHHHHHHhhcC------CcEEEEcCCCCCCchhhc----CCCCEEEEe
Confidence 456899998875432 237889999999966664 578888774
No 56
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=39.39 E-value=20 Score=24.89 Aligned_cols=43 Identities=2% Similarity=0.177 Sum_probs=33.3
Q ss_pred eEEecCCCceEeeeec-CcHHHHHHHHHhhhCCCCCceeEEEcc
Q psy14653 9 YKIIDYKRERKVGVVA-SSLEEIKRKAQDKLSNTSDNIKILLES 51 (191)
Q Consensus 9 fKV~n~~R~~k~GVaA-~SL~EL~~Ka~~~l~i~~~~~~LvLee 51 (191)
.||+..+...|.-|-+ .++.+|+.|..+.++++....+|.+..
T Consensus 7 lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~ 50 (80)
T 2pjh_A 7 IRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINR 50 (80)
T ss_dssp CEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSC
T ss_pred EEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecC
Confidence 5777777777777655 789999999999999986565665543
No 57
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=38.58 E-value=78 Score=20.73 Aligned_cols=47 Identities=11% Similarity=0.214 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHhh---hCCCCCceeEEEccCCceeccchhccc--CCCCeeEee
Q psy14653 25 SSLEEIKRKAQDK---LSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~---l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 73 (191)
.+..+|+.+..+. -+++.+..+|. ..|...+|+.-+.. +.++..+++
T Consensus 26 ~TV~~lK~~i~~~~~~~gip~~~qrLi--~~Gk~L~D~~tL~~~~i~~g~~i~l 77 (85)
T 2wyq_A 26 ETVKVLKEKIEAEKGRDAFPVAGQKLI--YAGKILSDDVPIRDYRIDEKNFVVV 77 (85)
T ss_dssp SBHHHHHHHHHHHHCTTTCCGGGEEEE--ETTEECCTTSBGGGGCCCTTSEEEE
T ss_pred CCHHHHHHHHHhhccccCCCHHHeEEE--ECCEECcCCCCHHHcCCCCCCEEEE
Confidence 5789999999998 46775555554 46887766543332 334444443
No 58
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.36 E-value=28 Score=23.94 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcc--cCCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFC--TLENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~--tLp~nT~lm~ 73 (191)
.+..+|+.+.++..+++....+|+. .|...+|+.-+. .+.++.++.+
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l 85 (96)
T 1wx8_A 37 SNVRRFKKQISKYLHCNADRLVLIF--TGKILRDQDILSQRGILDGSTVHV 85 (96)
T ss_dssp CCHHHHHHHHHHHTCSCTTTBCCEE--TTEECCTTSCHHHHTCCTTEEEEC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEE--CCEECCCcCCHHHCCCCCCCEEEE
Confidence 5799999999999999976667654 577776653222 2345554433
No 59
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=37.95 E-value=27 Score=22.89 Aligned_cols=33 Identities=12% Similarity=0.252 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
.++.+|+.+.+++.+++.+ ...|..+|..++++
T Consensus 24 ~tv~~lk~~i~~~~gi~~~--~qrL~~~G~~L~d~ 56 (79)
T 2uyz_B 24 THLKKLKESYCQRQGVPMN--SLRFLFEGQRIADN 56 (79)
T ss_dssp SCTHHHHHHHHHHHTCCGG--GEEEEETTEECCTT
T ss_pred ChHHHHHHHHHHHHCCCcc--cEEEEECCEEeCCC
Confidence 5789999999999999864 44455689988766
No 60
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=37.90 E-value=97 Score=21.28 Aligned_cols=49 Identities=8% Similarity=0.274 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHhhh---CCCCCceeEEEccCCceeccchhccc--CCCCeeE-eeec
Q psy14653 25 SSLEEIKRKAQDKL---SNTSDNIKILLESDGTEIDEEDYFCT--LENNTTL-MVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l---~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~l-m~L~ 75 (191)
.+..+|+.+..+.+ +++.+..+|.. .|...+|+.-+.. +.++..+ |++.
T Consensus 21 ~TV~~LK~~I~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~~i~l~~~ 75 (95)
T 1uel_A 21 ETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILNDDTALKEYKIDEKNFVVVMVT 75 (95)
T ss_dssp SBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCTTSBGGGGTCCSSSEEEEEES
T ss_pred CHHHHHHHHHHhhcccCCCChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEEEEe
Confidence 57899999999984 68765666654 6888866633332 3344444 4443
No 61
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=37.79 E-value=93 Score=21.07 Aligned_cols=49 Identities=10% Similarity=0.260 Sum_probs=32.8
Q ss_pred eEEecCCCc--eEeeee-cCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 9 YKIIDYKRE--RKVGVV-ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 9 fKV~n~~R~--~k~GVa-A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
+||.+.+.. ..+=|- -..++.|+.+-|++.+++...+++ --||..+..+
T Consensus 10 ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf--~fdG~~l~~~ 61 (79)
T 3a4r_A 10 LRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSF--FFDGTKLSGK 61 (79)
T ss_dssp EEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEE--EETTEECCSC
T ss_pred EEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEE--EECCEEcCCC
Confidence 455555553 333332 357999999999999998654454 4589988544
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=37.76 E-value=70 Score=23.72 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch---hcccCCCCeeEeeec
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED---YFCTLENNTTLMVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe---YF~tLp~nT~lm~L~ 75 (191)
.+..+|+.+..++.++|...-+|++++.|...+|+. .+.--+..|..++++
T Consensus 23 ~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 23 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 578999999999999997667777554577776542 222223445555555
No 63
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=36.05 E-value=76 Score=22.73 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
.+..+|+.+.+.+.+++....+|+ ..|...+|+.
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrLi--~~Gk~L~D~~ 89 (111)
T 3vdz_A 56 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGR 89 (111)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTS
T ss_pred CCHHHHHHHHHHHhCCChHHEEEE--ECCEECCCCC
Confidence 478999999999999986555555 4788876654
No 64
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=33.42 E-value=1e+02 Score=22.00 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=26.2
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEcc-CCce
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLES-DGTE 55 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLee-DGT~ 55 (191)
..+..+|+.|...+.++|.+.-+|.++- +|..
T Consensus 36 ~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~ 68 (97)
T 2kj6_A 36 QMSVEAVKEKLWKKCGTSVNSMALELYDDSGSK 68 (97)
T ss_dssp TCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCB
T ss_pred CChHHHHHHHHHHHHCcCHHHeEEEEecCCCcc
Confidence 3689999999999999998888888764 4554
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=32.30 E-value=84 Score=23.90 Aligned_cols=72 Identities=15% Similarity=0.187 Sum_probs=45.3
Q ss_pred EEecCCCceEeeee-cCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc---CC-------CCeeEeeecCCC
Q psy14653 10 KIIDYKRERKVGVV-ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT---LE-------NNTTLMVLFDNE 78 (191)
Q Consensus 10 KV~n~~R~~k~GVa-A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t---Lp-------~nT~lm~L~~ge 78 (191)
+|+.+..+.-.-|- -.+..+|+.|..++.+++..--+|. .+|.+.+|+.=... =. +-|.-++|+.+.
T Consensus 6 ~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI--~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~ 83 (118)
T 4ajy_B 6 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY--KDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD 83 (118)
T ss_dssp EEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECCSS
T ss_pred EEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEE--eCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEecCC
Confidence 45555433332332 3579999999999999997555554 46666655421111 11 557888899887
Q ss_pred ccccc
Q psy14653 79 KWTPV 83 (191)
Q Consensus 79 kW~p~ 83 (191)
.|-+-
T Consensus 84 ~fE~l 88 (118)
T 4ajy_B 84 TFEAL 88 (118)
T ss_dssp CCCCC
T ss_pred Cccce
Confidence 77554
No 66
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=31.30 E-value=82 Score=22.58 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
.+..+|+.+.....+++.+..+|.+ .|...+|+
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrL~~--~Gk~L~D~ 88 (115)
T 1we7_A 56 DQVSVIKVKIHEATGMPAGKQKLQY--EGIFIKDS 88 (115)
T ss_dssp SBTHHHHHHHHHHSSCCTTTEEEEE--TTEEECTT
T ss_pred CCHHHHHHHHHHHHCCChHHEEEEE--CCEECCCC
Confidence 5789999999999999976666655 57777655
No 67
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.86 E-value=70 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.5
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEcc
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLES 51 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLee 51 (191)
..+..+|+.|....++++....+|.++.
T Consensus 32 ~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 32 SMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp TSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred CCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 3589999999999999998888898873
No 68
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=30.68 E-value=54 Score=22.84 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=31.8
Q ss_pred EEecCC-CceEeeeec-CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 10 KIIDYK-RERKVGVVA-SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 10 KV~n~~-R~~k~GVaA-~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
+|...+ +....-|-. .++.+|+.+.+++.+++....+ |-.+|..++++
T Consensus 25 ~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qr--Lif~Gk~L~d~ 74 (97)
T 1wyw_B 25 KVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLR--FLFEGQRIADN 74 (97)
T ss_dssp EEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEE--EEETTEECCTT
T ss_pred EEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEE--EEECCeEcCCC
Confidence 344433 233333432 5799999999999999865444 44579888765
No 69
>1evs_A Oncostatin M; 4-helix bundle, GP130 binding cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.1
Probab=30.25 E-value=55 Score=26.93 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=29.6
Q ss_pred cCCCcchHHhhccchHHHHHHHHHHhhHhhhHHHHH
Q psy14653 123 SDMDPDNLLDIIPDKMFLNQVKEASCRFLSDKRNAQ 158 (191)
Q Consensus 123 ~d~~~~~La~~~~~~~~~~~lqet~~r~L~~r~ear 158 (191)
..+|.++-...++.+.|+++|--|+|+||.+=.--+
T Consensus 54 gaFPSed~L~~Lsr~~fL~Tl~ttLg~vlhrL~al~ 89 (187)
T 1evs_A 54 GAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLE 89 (187)
T ss_dssp TTSCCHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888889999999999999998754433
No 70
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=30.05 E-value=45 Score=24.36 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCC
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp 66 (191)
..+..|+.-=|.+.+|+.+ -+|-|.-||..++-+.+++-++
T Consensus 30 t~v~kLi~ayc~~~~I~~~-~~IrllFDGdRLdp~~tp~Dle 70 (82)
T 3goe_A 30 FTVKDLIKRYCTEVKISFH-ERIRLEFEGEWLDPNDQVQSTE 70 (82)
T ss_dssp SBHHHHHHHHHHHHTCCCC-TTCEEEETTEECCTTSBGGGSS
T ss_pred CCHHHHHHHHHHHcCCCcC-ceEEEEEcCcccCccCChhhhC
Confidence 3588999999999999963 3455556999998888877654
No 71
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=29.68 E-value=1.3e+02 Score=22.00 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=42.5
Q ss_pred CCeEEecCCCceEeee-e--cCcHHHHHHHHHhhhCCCCCceeEEEccCCceec---cchhcccC
Q psy14653 7 RPYKIIDYKRERKVGV-V--ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEID---EEDYFCTL 65 (191)
Q Consensus 7 KPfKV~n~~R~~k~GV-a--A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~Vd---dEeYF~tL 65 (191)
=++||.=.....++.| - ..+++||-...+..|+++. ..-=+.+|||-+|- +.||.-.|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~-~~ikY~DEenD~v~i~Sq~E~eEAl 70 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-IQIKYLDEENEEVSINSQGEYEEAL 70 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS-EEEEEECTTSCEEEECSHHHHHHHH
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc-eEEEEEcCCCCEEEEecHHHHHHHH
Confidence 4567777777788888 4 6899999999999999984 44445678886663 55665443
No 72
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=29.64 E-value=57 Score=24.01 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=30.0
Q ss_pred CCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCCC-ceeEEEccCCceeccchhcccCCCCeeEeee
Q psy14653 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSD-NIKILLESDGTEIDEEDYFCTLENNTTLMVL 74 (191)
Q Consensus 7 KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~~-~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L 74 (191)
|.++|++.+|+ -.++.+|.+|+++... +..-.| +|-||++-+|++=
T Consensus 19 KSI~ltsqDrt----------p~vI~~al~Khnl~~~~~~~y~L------------~Q~Lp~~kEL~iP 65 (87)
T 1lfd_A 19 KSILVTSQDKA----------PTVIRKAMDKHNLDEDEPEDYEL------------LQIISEDHKLKIP 65 (87)
T ss_dssp EEEEEETTCBH----------HHHHHHHHHHTTCCSSCGGGEEE------------EEESSSSCEEECC
T ss_pred EEEEEecCCCc----------HHHHHHHHHHcCCCCCCccceEE------------EEEcCCCCEEecC
Confidence 44566677665 3789999999999853 332222 5666666666553
No 73
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=29.01 E-value=1.9e+02 Score=21.94 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEecCCCceEeeeecCcHHHHHHHHHhhhCCCC-CceeEEEccCCceec-cchhcccCCCC------eeEeeecCC
Q psy14653 10 KIIDYKRERKVGVVASSLEEIKRKAQDKLSNTS-DNIKILLESDGTEID-EEDYFCTLENN------TTLMVLFDN 77 (191)
Q Consensus 10 KV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~-~~~~LvLeeDGT~Vd-dEeYF~tLp~n------T~lm~L~~g 77 (191)
|....+.+.|.=-.-.++.+.+.||-.+|++.. +-..+|+-..|.++. ++|-|.++..| --|++..++
T Consensus 4 rFIacnGQTRaVq~~~~y~~~L~~ALkKF~ledpskw~Vcvtqssr~~~it~e~f~~icr~~srPEReRLIl~~K~ 79 (110)
T 1k8r_B 4 RFIACNGQTRAVQSRGDYQKTLAIALKKFSLEDASKFIVCVSQSSRIKLITEEEFKQICFNSSSPERDRLIIVPKE 79 (110)
T ss_dssp EEECSTTCEEEEECCSCHHHHHHHHHHHHTCCCTTSEEEEEECSSSEEECCCC-------------CCCEEEEESS
T ss_pred EEeecCCceEEeeehhhHHHHHHHHHHHcCCCChhHeEEEEecCceEEEecHhHHHHHHhCCCCcchheeEEecCC
Confidence 334445555555566788899999999999954 367788877788765 66777777544 345555444
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=28.70 E-value=1.1e+02 Score=21.89 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=31.6
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--CCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--LENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--Lp~nT~lm~ 73 (191)
.+..+|+.+.+++.+++.+..+|+ ..|...+|+.-+.. +.++..+.+
T Consensus 97 ~tv~~lK~~i~~~~gi~~~~qrL~--~~g~~L~d~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 97 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHL 145 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CcHHHHHHHHHHHhCcChhhEEEE--ECCEECCCCCCHHHcCCCCCCEEEE
Confidence 578999999999999986556665 46887766543333 234444433
No 75
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.55 E-value=1.6e+02 Score=20.81 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=33.0
Q ss_pred cCcHHHHHHHHHhhh--CCCCCc-eeEEEccCCceeccchhcc--cCCCCeeE-eeecC
Q psy14653 24 ASSLEEIKRKAQDKL--SNTSDN-IKILLESDGTEIDEEDYFC--TLENNTTL-MVLFD 76 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l--~i~~~~-~~LvLeeDGT~VddEeYF~--tLp~nT~l-m~L~~ 76 (191)
-.+..+|+.+.+++. +++... .+|. ..|...+|+.-+. .+.++..+ |+++.
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi--~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLI--YCGRKLKDDQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEE--ETTEECCTTCBHHHHTCCTTCEEEEEESS
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEE--ECCeECCCCCcHHHcCCCCCCEEEEEeCC
Confidence 368999999999999 998755 5664 4577776653222 23344444 44443
No 76
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.47 E-value=64 Score=22.42 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=30.8
Q ss_pred cCcHHHHHHHHHhh-hCCCCCceeEEEccCCceeccchhcc
Q psy14653 24 ASSLEEIKRKAQDK-LSNTSDNIKILLESDGTEIDEEDYFC 63 (191)
Q Consensus 24 A~SL~EL~~Ka~~~-l~i~~~~~~LvLeeDGT~VddEeYF~ 63 (191)
-.+..+|+.+..+. -+++..--+|.+...|...+|+.-+.
T Consensus 33 ~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~ 73 (88)
T 2dzj_A 33 HATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQ 73 (88)
T ss_dssp SCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTT
T ss_pred CCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHH
Confidence 36889999999984 68887778888877888886664443
No 77
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=28.44 E-value=1.4e+02 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.322 Sum_probs=22.9
Q ss_pred cCcHHHHHHHHHhhhCCCCC-ceeEEEc
Q psy14653 24 ASSLEEIKRKAQDKLSNTSD-NIKILLE 50 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~-~~~LvLe 50 (191)
+.++.+|..++|..|+|+.. .++|-..
T Consensus 149 ~~ti~~l~~~~~~~~~i~~~~~~RlW~~ 176 (217)
T 4a3p_A 149 ADTIDTIEKEIRKIFSIPDEKETRLWNK 176 (217)
T ss_dssp TSBHHHHHHHHHHHTTCCTTSCEEEEEE
T ss_pred cchHHHHHHHHHHHhCCCCCCceEEEEe
Confidence 46889999999999999875 7888764
No 78
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=27.84 E-value=1.2e+02 Score=22.31 Aligned_cols=49 Identities=4% Similarity=-0.006 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc----hhcccCCCCeeEeeec
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE----DYFCTLENNTTLMVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE----eYF~tLp~nT~lm~L~ 75 (191)
.+..+|+++..+++++|..--+++. -|...+|+ +|-..=+..|.++++-
T Consensus 47 ~TV~~LK~~I~~k~Gipp~~QRli~--ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 47 MTVASLKDMVFLDYGFPPVLQQWVI--GQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEE--TTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred ChHHHHHHHHHHHhCCCHHHEEEec--cCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 4789999999999999976566543 44444333 6766667778887764
No 79
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=27.28 E-value=73 Score=21.08 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
..++.|+.+-|++.+++...+++. -||..+..+
T Consensus 22 t~l~kl~~~y~~~~gi~~~~~rf~--fdG~~l~~~ 54 (72)
T 1wm3_A 22 TPLSKLMKAYCERQGLSMRQIRFR--FDGQPINET 54 (72)
T ss_dssp SCTHHHHHHHHHHHTCCTTTCEEE--ETTEECCTT
T ss_pred ChHHHHHHHHHHHhCCCcceEEEE--ECCEEcCCC
Confidence 568999999999999987555554 489988554
No 80
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=26.46 E-value=27 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=31.3
Q ss_pred cchhhhcCCCcchHHhhccc-hHHHHHHHHHHhhHhhhH
Q psy14653 117 QELELLSDMDPDNLLDIIPD-KMFLNQVKEASCRFLSDK 154 (191)
Q Consensus 117 ~dLq~L~d~~~~~La~~~~~-~~~~~~lqet~~r~L~~r 154 (191)
..++.+.-+|+.+|+.+-|. ..+++.|++..+..+.++
T Consensus 28 ~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l~~~ 66 (70)
T 1u9l_A 28 STLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATI 66 (70)
T ss_dssp CCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999864 889999999988776654
No 81
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=26.32 E-value=1.9e+02 Score=21.03 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=27.1
Q ss_pred cCcHHHHHHHHHhhhCCCCCceeEEEcc-CCcee
Q psy14653 24 ASSLEEIKRKAQDKLSNTSDNIKILLES-DGTEI 56 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l~i~~~~~~LvLee-DGT~V 56 (191)
-.+..+|+.|...+.++|..--+|.+.. +|..+
T Consensus 27 ~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~ 60 (122)
T 1t0y_A 27 GMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLK 60 (122)
T ss_dssp TSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEE
T ss_pred CCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccc
Confidence 3589999999999999998888888864 66643
No 82
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=25.94 E-value=81 Score=24.08 Aligned_cols=33 Identities=6% Similarity=0.088 Sum_probs=25.3
Q ss_pred cCcHHHHHHHHHhhh-CCCCCceeEEE-ccCCcee
Q psy14653 24 ASSLEEIKRKAQDKL-SNTSDNIKILL-ESDGTEI 56 (191)
Q Consensus 24 A~SL~EL~~Ka~~~l-~i~~~~~~LvL-eeDGT~V 56 (191)
+.|+++|+.|+...| ++...++.|.- +|||-.|
T Consensus 56 ~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 56 PGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLV 90 (117)
T ss_dssp CCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEE
T ss_pred CCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEE
Confidence 579999999999999 56544566644 4789877
No 83
>3aia_A UPF0217 protein MJ1640; DUF358, rRNA methyltransferase, spout-class fold, transferas; HET: SAM; 1.40A {Methanocaldococcus jannaschii} PDB: 3ai9_X*
Probab=25.24 E-value=80 Score=26.25 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=28.4
Q ss_pred ecCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEeee
Q psy14653 23 VASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVL 74 (191)
Q Consensus 23 aA~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~L 74 (191)
.-.||++|+....+. ..-.++|.|||+-|..-+| .|..|++=
T Consensus 121 ~~~sle~ll~e~~~~-----~~~v~~L~E~G~~i~~~~~-----~~~~fvlG 162 (211)
T 3aia_A 121 RRLGFRNLVLEKLEE-----GKNIYYLHMNGEDVENVDI-----ENPVFIIG 162 (211)
T ss_dssp ECCCHHHHHHHHHHT-----TCEEEEEEEEEEEGGGCCC-----CSEEEEEE
T ss_pred EcCCHHHHHHHHhhc-----CCcEEEEcCCCCCCccccc-----CCcEEEEE
Confidence 445777777764331 1136789999999966664 67888774
No 84
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=24.84 E-value=1.2e+02 Score=22.95 Aligned_cols=49 Identities=22% Similarity=0.408 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhccc--C-CCCeeEeeec
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCT--L-ENNTTLMVLF 75 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~t--L-p~nT~lm~L~ 75 (191)
.+..+|+.+.+++.+++...-+|+ ..|...+|+.-+.. + +..|..|+++
T Consensus 41 ~tV~~lK~~I~~~~gip~~~QrL~--~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 41 DTIENVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEE--ETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEE--ECCccccccCCHhHcCCcccceeeeeec
Confidence 478999999999999986555555 46877766543332 2 3445555544
No 85
>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}
Probab=24.77 E-value=18 Score=26.67 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.1
Q ss_pred eEEEccCCceeccchhc
Q psy14653 46 KILLESDGTEIDEEDYF 62 (191)
Q Consensus 46 ~LvLeeDGT~VddEeYF 62 (191)
.|+.+-|||+||++..+
T Consensus 6 ~viFD~DGtL~Ds~~~~ 22 (180)
T 3bwv_A 6 RIAIDMDEVLADTLGAV 22 (180)
T ss_dssp EEEEETBTTTBCHHHHH
T ss_pred EEEEeCCCcccccHHHH
Confidence 47789999999998753
No 86
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=24.38 E-value=78 Score=25.87 Aligned_cols=45 Identities=7% Similarity=0.160 Sum_probs=31.0
Q ss_pred CeEEecCCCceEeeee-----cCcHHHHHHHHHhhhCCCCC-ceeEEEccCC
Q psy14653 8 PYKIIDYKRERKVGVV-----ASSLEEIKRKAQDKLSNTSD-NIKILLESDG 53 (191)
Q Consensus 8 PfKV~n~~R~~k~GVa-----A~SL~EL~~Ka~~~l~i~~~-~~~LvLeeDG 53 (191)
.|+++.+.-... -++ +.++.+|+.++|..|+|+.. .++|-...++
T Consensus 141 ~l~l~~~~~~~~-~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~ 191 (231)
T 3jyu_A 141 ELKLCENSDPTN-VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMS 191 (231)
T ss_dssp EEEEEETTEEEE-EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSS
T ss_pred eEEEEecCCCCc-eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCC
Confidence 356666553322 122 24899999999999999875 6999886533
No 87
>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=24.09 E-value=84 Score=23.24 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=30.6
Q ss_pred CCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCC-CceeEEEccCCceeccchhcccCCCCeeEee
Q psy14653 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTS-DNIKILLESDGTEIDEEDYFCTLENNTTLMV 73 (191)
Q Consensus 7 KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~-~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~ 73 (191)
|.++|++.+|+. .++.+|.+|+++.. .+..-.| +|-||++-+|++
T Consensus 22 KSIlltsqDktp----------~vI~~al~Khnl~~~~~~~y~L------------~Q~Lp~~kEL~i 67 (90)
T 1rlf_A 22 KSILVTSQDKAP----------SVISRVLKKNNRDSAVASEFEL------------VQLLPGDRELTI 67 (90)
T ss_dssp CEEEEETTCCCT----------THHHHHHHHTTTTSCCCCCEEE------------EETTTTCEECCT
T ss_pred EEEEEecCCCcH----------HHHHHHHHHcCCCCCChhheEE------------EEEcCCCCEEec
Confidence 667788888764 68999999999976 2333222 566666665554
No 88
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=23.82 E-value=25 Score=25.64 Aligned_cols=16 Identities=38% Similarity=0.692 Sum_probs=12.4
Q ss_pred EEEccCCceeccchhc
Q psy14653 47 ILLESDGTEIDEEDYF 62 (191)
Q Consensus 47 LvLeeDGT~VddEeYF 62 (191)
++++-|||++++..+|
T Consensus 4 v~~D~DGtL~~~~~~~ 19 (179)
T 3l8h_A 4 IILDRDGVVNQDSDAF 19 (179)
T ss_dssp EEECSBTTTBCCCTTC
T ss_pred EEEcCCCccccCCCcc
Confidence 6788999999776544
No 89
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=23.51 E-value=1.7e+02 Score=21.99 Aligned_cols=69 Identities=12% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCeEEecCCCceEeee-e--cCcHHHHHHHHHhhhCCCCCceeEEEccCCceec---cchhcccCC-----CCeeEeeec
Q psy14653 7 RPYKIIDYKRERKVGV-V--ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEID---EEDYFCTLE-----NNTTLMVLF 75 (191)
Q Consensus 7 KPfKV~n~~R~~k~GV-a--A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~Vd---dEeYF~tLp-----~nT~lm~L~ 75 (191)
=.+||.=.....++.| - ..+++||-...+..|+++. ..-=+++|||-+|- +.||.-.|- +|..-|...
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-~~IkY~DEenD~V~i~Sq~E~eEAlkva~k~~n~L~m~V~ 93 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-IQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQMQVH 93 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-BCCEEECTTSCEECCCSHHHHHHHHHHHHHHTSEEEEECC
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-eEEEEecCCCCEEEEecHHHHHHHHHHhccCCCEEEEEEe
Confidence 3567777777788888 4 6899999999999999984 44456789997764 567766552 555555443
Q ss_pred C
Q psy14653 76 D 76 (191)
Q Consensus 76 ~ 76 (191)
+
T Consensus 94 ~ 94 (101)
T 1wj6_A 94 E 94 (101)
T ss_dssp B
T ss_pred e
Confidence 3
No 90
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=23.29 E-value=93 Score=21.98 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=32.8
Q ss_pred eEEecCCCc-eEeeee-cCcHHHHHHHHHhhhCCCCCceeEEEccCCceeccch
Q psy14653 9 YKIIDYKRE-RKVGVV-ASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEED 60 (191)
Q Consensus 9 fKV~n~~R~-~k~GVa-A~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEe 60 (191)
+||.+.++. ..+=|- -..++.|+.+-|++.+++...+++ --||..|.+++
T Consensus 8 ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf--~FdG~~l~~~~ 59 (91)
T 2io0_B 8 LKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF--RFDGQPINETD 59 (91)
T ss_dssp EEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEE--EETTEECCTTC
T ss_pred EEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEE--EECCEEcCCCC
Confidence 455554433 333332 256899999999999998655554 45899996553
No 91
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=22.98 E-value=21 Score=27.19 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.4
Q ss_pred eEEEccCCceeccchhccc
Q psy14653 46 KILLESDGTEIDEEDYFCT 64 (191)
Q Consensus 46 ~LvLeeDGT~VddEeYF~t 64 (191)
.|+++-|||++|+..||..
T Consensus 21 ~vifD~DGTL~d~~~~~~~ 39 (189)
T 3mn1_A 21 LAVFDVDGVLTDGRLYFME 39 (189)
T ss_dssp EEEECSTTTTSCSEEEEET
T ss_pred EEEEcCCCCcCCccEeecc
Confidence 5778999999998877654
No 92
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.74 E-value=1.3e+02 Score=21.91 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=26.3
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchh
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDY 61 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeY 61 (191)
.+..+|+.+..++.+++..-.+|. .-|.+.+|+.-
T Consensus 49 dTV~~lK~~Ia~k~Gip~~qQrLi--~~Gk~L~D~~T 83 (100)
T 1uh6_A 49 DTIGDLKKLIAAQTGTRWNKIVLK--KWYTIFKDHVS 83 (100)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEE--ETTEECCSSCB
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEE--ECCEECCCCCC
Confidence 588999999999999986555554 44888866543
No 93
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
Probab=22.34 E-value=24 Score=26.41 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=13.6
Q ss_pred eEEEccCCceeccchhc
Q psy14653 46 KILLESDGTEIDEEDYF 62 (191)
Q Consensus 46 ~LvLeeDGT~VddEeYF 62 (191)
.|+.+-|||++|++..+
T Consensus 4 ~viFDlDGTL~Ds~~~~ 20 (193)
T 2i7d_A 4 RVLVDMDGVLADFEAGL 20 (193)
T ss_dssp EEEECSBTTTBCHHHHH
T ss_pred EEEEECCCcCccchhHH
Confidence 57788999999987543
No 94
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=21.95 E-value=30 Score=25.65 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=11.8
Q ss_pred EEEccCCceeccchh
Q psy14653 47 ILLESDGTEIDEEDY 61 (191)
Q Consensus 47 LvLeeDGT~VddEeY 61 (191)
|+.+-|||++|++..
T Consensus 4 ViFD~DGTL~ds~~~ 18 (216)
T 3kbb_A 4 VIFDMDGVLMDTEPL 18 (216)
T ss_dssp EEEESBTTTBCCGGG
T ss_pred EEECCCCcccCCHHH
Confidence 678899999986553
No 95
>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A
Probab=21.71 E-value=23 Score=26.67 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=14.2
Q ss_pred eeEEEccCCceeccchhc
Q psy14653 45 IKILLESDGTEIDEEDYF 62 (191)
Q Consensus 45 ~~LvLeeDGT~VddEeYF 62 (191)
-.|..+-|||+||++..+
T Consensus 5 k~viFDlDGTL~Ds~~~~ 22 (197)
T 1q92_A 5 LRVLVDMDGVLADFEGGF 22 (197)
T ss_dssp EEEEECSBTTTBCHHHHH
T ss_pred eEEEEeCCCCCccCcHHH
Confidence 357788999999988644
No 96
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=21.53 E-value=1.6e+02 Score=21.66 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
.+..+|+.+..++.++|.+..+|+ ..|.+.+|+
T Consensus 102 ~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d~ 134 (159)
T 3rt3_B 102 QTVAHLKQQVSGLEGVQDDLFWLT--FEGKPLEDQ 134 (159)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEE--ETTEECCTT
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEE--ECCeecCCC
Confidence 578999999999999986555554 578887665
No 97
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=21.50 E-value=1e+02 Score=25.79 Aligned_cols=39 Identities=13% Similarity=0.310 Sum_probs=24.7
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccchhcccCCCCeeEee
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLENNTTLMV 73 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddEeYF~tLp~nT~lm~ 73 (191)
.+|++|+....+. .-..+|.|||+-|.+-+ +|.|..|++
T Consensus 121 ~~fe~ll~e~~~~------~~ly~L~e~G~di~~~~----~~~~~~FvL 159 (208)
T 2qwv_A 121 ISFEALLGELAEH------HSLYMMDKKGDSIRDIK----IGPNPCFIL 159 (208)
T ss_dssp CCHHHHHHHHHTT------SEEEEEEEEEEETTTSC----CCSSEEEEE
T ss_pred CCHHHHHHHHHhc------CcEEEEeCCCcCHhhcc----CCCCCEEEE
Confidence 3555555543321 22678999999985543 358888887
No 98
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=26.78 E-value=20 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEccCCceeccc
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEE 59 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLeeDGT~VddE 59 (191)
.+..+|+.+.++..+++.+..+|+ ..|...+|+
T Consensus 21 ~tV~~lK~~i~~~~gi~~~~qrL~--~~gk~L~d~ 53 (76)
T 3b1l_X 21 TSILQLKEVVAKQQGVPADQLRVI--FAGKELPNH 53 (76)
Confidence 578899999999999986555554 468777554
No 99
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=20.72 E-value=50 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhHhhhHHHHHHHHHHHHH
Q psy14653 137 KMFLNQVKEASCRFLSDKRNAQEALDLLKL 166 (191)
Q Consensus 137 ~~~~~~lqet~~r~L~~r~earqs~~LL~L 166 (191)
+.-.+.|..++.+++.+++..+...++++-
T Consensus 107 P~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ 136 (151)
T 3kcn_A 107 PCQMSDIKAAINAGIKQYDLVTSKEELLKK 136 (151)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688888899999888877766666653
No 100
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=20.42 E-value=28 Score=27.06 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=12.6
Q ss_pred eEEEccCCceeccchh
Q psy14653 46 KILLESDGTEIDEEDY 61 (191)
Q Consensus 46 ~LvLeeDGT~VddEeY 61 (191)
.|+.+-|||+||++.+
T Consensus 28 aViFDlDGTLvDs~~~ 43 (250)
T 4gib_A 28 AFIFDLDGVITDTAYY 43 (250)
T ss_dssp EEEECTBTTTBCCHHH
T ss_pred eeeecCCCcccCCHHH
Confidence 3667899999987654
No 101
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=20.42 E-value=28 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=12.2
Q ss_pred EEEccCCceeccchh
Q psy14653 47 ILLESDGTEIDEEDY 61 (191)
Q Consensus 47 LvLeeDGT~VddEeY 61 (191)
|+.+-|||+||++..
T Consensus 8 ViFDlDGTL~Ds~~~ 22 (243)
T 4g9b_A 8 VIFDLDGVITDTAHL 22 (243)
T ss_dssp EEECSBTTTBCCHHH
T ss_pred EEEcCCCcccCCHHH
Confidence 668899999987654
No 102
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=20.27 E-value=2.2e+02 Score=19.54 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHhhhCCCCCceeEEEcc-CCce
Q psy14653 25 SSLEEIKRKAQDKLSNTSDNIKILLES-DGTE 55 (191)
Q Consensus 25 ~SL~EL~~Ka~~~l~i~~~~~~LvLee-DGT~ 55 (191)
.+..+|+.|...+.++|.+.-+|.+.. +|..
T Consensus 29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~ 60 (95)
T 1v6e_A 29 LTIAEFKCKLELVVGSPASCMELELYGADDKF 60 (95)
T ss_dssp SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCE
T ss_pred CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCcc
Confidence 689999999999999998788887764 5665
No 103
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=20.08 E-value=1.1e+02 Score=23.57 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred CCeEEecCCCceEeeeecCcHHHHHHHHHhhhCCCC
Q psy14653 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTS 42 (191)
Q Consensus 7 KPfKV~n~~R~~k~GVaA~SL~EL~~Ka~~~l~i~~ 42 (191)
|.++|++.+|+ -.++.+|.+|+++..
T Consensus 44 KSIlltsqDkt----------p~VI~raL~Khnl~~ 69 (115)
T 1rax_A 44 KSILVTSQDKA----------PAVIRKAMDKHNLEE 69 (115)
T ss_dssp EEEEEETTCCH----------HHHHHHHHHHHTCTT
T ss_pred EEEEEecCCCc----------HHHHHHHHHHcCCCC
Confidence 44555666654 479999999999985
Done!