RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14653
(191 letters)
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 104 bits (261), Expect = 6e-30
Identities = 30/79 (37%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
QRP+++ D+KR + G+ A++ +E+ KA + L + + ++LE DGT +D ED+F L
Sbjct: 35 QRPFRVCDHKRTIRKGLTAATRQELLAKALETL-LLNGVLTLVLEEDGTAVDSEDFFQLL 93
Query: 66 ENNTTLMVLFDNEKWTPVK 84
E++T LMVL + W+P +
Sbjct: 94 EDDTCLMVLQSGQSWSPTR 112
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 97.1 bits (242), Expect = 2e-27
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTLE 66
+ K+ + RK GV S +E+ RK + ++ L DGTE+ EDYF ++
Sbjct: 6 KSVKLRALRSPRKFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTELT-EDYFPSVP 64
Query: 67 NNTTLMVLFDNEKWTP 82
+N L++L + W
Sbjct: 65 DNAELVLLTLGQAWQG 80
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 87
Score = 97.1 bits (242), Expect = 2e-27
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 6 QRPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDGTEIDEEDYFCTL 65
+ K+ K GV A S +E+ RK + ++ L DGTE+ +D F L
Sbjct: 8 PKCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRLCLYEDGTEVT-DDCFPGL 66
Query: 66 ENNTTLMVLFDNEKWTP 82
N+ L++L E W
Sbjct: 67 PNDAELLLLTAGETWHG 83
>d1f2ri_ d.15.2.1 (I:) Inhibitor of caspase-activated DNase
(ICAD), DFF45, N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 100
Score = 93.4 bits (232), Expect = 9e-26
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKL--SNTSDNIKILLESDGTEIDEEDYFCT 64
+P + + GV ASSLEE++ KA + L + I ++L DGT +D++DYF
Sbjct: 19 KPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC 78
Query: 65 LENNTTLMVLFDNEKWTP 82
L +NT + L NEKWT
Sbjct: 79 LPSNTKFVALACNEKWTY 96
>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal
protein L2 {Escherichia coli [TaxId: 562]}
Length = 64
Score = 27.0 bits (60), Expect = 0.35
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 9 YKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDG 53
Y+I+D+KR K G+ A ++R D N S NI ++L DG
Sbjct: 1 YRIVDFKR-NKDGIPA----VVERLEYD--PNRSANIALVLYKDG 38
>d1ckma1 b.40.4.6 (A:239-327) RNA guanylyltransferase (mRNA
capping enzyme) {Chlorella virus PBCV-1 [TaxId: 10506]}
Length = 89
Score = 25.1 bits (55), Expect = 2.4
Identities = 4/45 (8%), Positives = 12/45 (26%)
Query: 40 NTSDNIKILLESDGTEIDEEDYFCTLENNTTLMVLFDNEKWTPVK 84
+ I I + + + + F + W ++
Sbjct: 11 SEDGTIGIFDPNLRKNVPVGKLDGYYNKGSIVECGFADGTWKYIQ 55
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 26.7 bits (57), Expect = 2.5
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 119 LELLSDMDPD----------NLLDIIPDKMFLNQVKEASCRFLSD-----KRNAQEALDL 163
L + D + + I+ + ++VK + D K AQEAL +
Sbjct: 525 LRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584
Query: 164 LKL 166
L L
Sbjct: 585 LSL 587
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein
L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 90
Score = 25.0 bits (55), Expect = 2.6
Identities = 6/47 (12%), Positives = 11/47 (23%), Gaps = 6/47 (12%)
Query: 7 RPYKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDG 53
+ K E + + D S + + DG
Sbjct: 23 YKADLEHRKVEDGDVIAG----TVVDIEHD--PARSAPVAAVEFEDG 63
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 25.5 bits (56), Expect = 3.2
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 62 FCTLENNTTLMVLFD----NEKWTPVKQFVDAVDGSHHPLTQLLSLLQEDIGQLSL 113
+L + + F+ P+ + D H TQ ++ Q G +
Sbjct: 100 MASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRI 155
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal
protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Length = 66
Score = 24.3 bits (53), Expect = 3.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 9 YKIIDYKRERKVGVVASSLEEIKRKAQDKLSNTSDNIKILLESDG 53
Y+IID+KR K G+ + D N S NI ++ +DG
Sbjct: 2 YRIIDFKR-DKDGIPG----RVATIEYD--PNRSANIALINYADG 39
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 130
Score = 24.2 bits (52), Expect = 8.6
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 95 HPLTQLLSLLQEDI---GQLSLLGGQELELLSDMDPDNLLDIIPDKMFLNQ 142
LL L EDI QL L +E + L + L ++ K L Q
Sbjct: 2 PDSPTLLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQ 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.359
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,140
Number of extensions: 29986
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 22
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)