Query psy14654
Match_columns 122
No_of_seqs 133 out of 501
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 17:15:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4304|consensus 100.0 4.6E-35 1E-39 234.3 8.5 101 2-102 23-125 (250)
2 PF00010 HLH: Helix-loop-helix 99.5 6.2E-15 1.4E-19 92.2 3.7 55 11-68 1-55 (55)
3 cd00083 HLH Helix-loop-helix d 99.4 1.3E-13 2.8E-18 86.3 4.3 56 10-70 3-58 (60)
4 smart00353 HLH helix loop heli 99.3 2E-12 4.4E-17 79.6 4.6 50 17-71 2-51 (53)
5 KOG1318|consensus 99.0 1.8E-10 3.9E-15 98.2 4.0 62 7-72 229-290 (411)
6 KOG1319|consensus 98.9 2.2E-09 4.8E-14 84.1 4.9 85 8-93 59-149 (229)
7 KOG3561|consensus 98.9 3.2E-09 7E-14 96.6 5.6 59 8-70 17-75 (803)
8 PF07527 Hairy_orange: Hairy O 98.3 5.9E-07 1.3E-11 54.1 3.1 22 83-104 1-22 (43)
9 smart00511 ORANGE Orange domai 98.2 1.2E-06 2.5E-11 53.1 2.3 21 83-103 1-21 (45)
10 KOG3560|consensus 98.2 1.3E-06 2.8E-11 77.4 3.2 45 19-67 33-77 (712)
11 KOG0561|consensus 97.7 3.9E-05 8.4E-10 64.1 4.6 59 8-72 54-115 (373)
12 KOG2483|consensus 97.2 0.00057 1.2E-08 54.9 5.0 61 7-72 55-115 (232)
13 KOG4029|consensus 96.9 0.0005 1.1E-08 54.0 1.6 58 11-72 109-166 (228)
14 KOG2588|consensus 96.7 0.0016 3.4E-08 60.8 3.5 56 10-72 275-330 (953)
15 KOG3960|consensus 96.5 0.0049 1.1E-07 50.5 4.8 55 9-69 116-170 (284)
16 PLN03217 transcription factor 96.0 0.016 3.5E-07 40.5 4.8 46 24-71 20-65 (93)
17 KOG3558|consensus 94.9 0.02 4.4E-07 52.4 2.8 45 19-67 54-98 (768)
18 KOG3910|consensus 93.9 0.12 2.5E-06 46.2 5.2 66 8-77 523-589 (632)
19 KOG3559|consensus 91.8 0.15 3.3E-06 44.8 3.0 47 17-67 7-53 (598)
20 KOG4395|consensus 88.7 0.72 1.6E-05 38.0 4.3 57 9-70 172-228 (285)
21 PF14071 YlbD_coat: Putative c 73.2 21 0.00045 26.3 6.7 44 50-103 60-103 (124)
22 PF15392 Joubert: Joubert synd 64.5 45 0.00097 28.4 7.7 87 6-104 51-137 (329)
23 PF15027 DUF4525: Domain of un 56.5 44 0.00096 25.0 5.7 49 49-100 40-88 (138)
24 KOG3898|consensus 55.0 6.9 0.00015 31.6 1.4 50 17-71 78-127 (254)
25 COG1849 Uncharacterized protei 49.6 89 0.0019 21.9 7.1 73 22-97 6-78 (90)
26 COG3926 zliS Lysozyme family p 47.2 33 0.00072 28.1 4.1 39 82-122 150-188 (252)
27 PF12644 DUF3782: Protein of u 46.8 68 0.0015 19.8 6.8 16 81-96 47-62 (64)
28 PF06156 DUF972: Protein of un 43.6 50 0.0011 23.4 4.1 58 26-93 20-90 (107)
29 KOG4447|consensus 41.3 10 0.00022 29.3 0.3 56 9-70 76-131 (173)
30 PRK13169 DNA replication intia 32.4 1.4E+02 0.003 21.4 5.0 43 51-93 35-87 (110)
31 PF06320 GCN5L1: GCN5-like pro 31.6 2E+02 0.0043 20.7 6.6 26 15-41 13-38 (121)
32 KOG3003|consensus 29.1 92 0.002 25.4 4.0 41 22-67 103-143 (236)
33 COG1458 Predicted DNA-binding 27.3 3E+02 0.0065 22.2 6.5 37 22-62 104-140 (221)
34 KOG1746|consensus 27.3 1.4E+02 0.003 21.7 4.2 38 82-119 55-92 (115)
35 KOG3582|consensus 26.4 39 0.00084 31.9 1.6 60 9-71 649-708 (856)
36 PHA00438 hypothetical protein 26.1 1.1E+02 0.0024 21.0 3.4 51 54-104 16-72 (81)
37 PHA02078 hypothetical protein 25.5 1.7E+02 0.0037 18.7 3.9 28 29-68 23-50 (54)
38 PRK09866 hypothetical protein; 25.4 2.6E+02 0.0057 26.4 6.7 55 55-109 645-700 (741)
39 COG2352 Ppc Phosphoenolpyruvat 25.2 5E+02 0.011 25.2 8.5 87 24-121 155-249 (910)
40 cd07632 BAR_APPL2 The Bin/Amph 24.0 2.8E+02 0.006 22.3 5.8 24 82-105 189-212 (215)
41 PF02344 Myc-LZ: Myc leucine z 23.4 85 0.0018 18.0 2.0 17 19-35 13-29 (32)
42 PHA01819 hypothetical protein 21.8 82 0.0018 22.7 2.2 27 92-118 82-108 (129)
43 PF04136 Sec34: Sec34-like fam 21.4 2.6E+02 0.0057 20.7 5.0 22 80-101 118-139 (157)
44 PF08269 Cache_2: Cache domain 20.9 2.5E+02 0.0054 18.2 4.5 49 19-69 5-53 (95)
No 1
>KOG4304|consensus
Probab=100.00 E-value=4.6e-35 Score=234.34 Aligned_cols=101 Identities=54% Similarity=0.820 Sum_probs=91.9
Q ss_pred CccccchhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccCCCc--ch
Q psy14654 2 STLSIEVVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTP--EA 79 (122)
Q Consensus 2 ~~~s~~~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~~~~--~~ 79 (122)
..+++++++||.+||+||||||||||+||++||+||++++++++...+||||||||||||+||+.|++.+..+... ..
T Consensus 23 ~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~~~ 102 (250)
T KOG4304|consen 23 ERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAPAA 102 (250)
T ss_pred CcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 4678999999999999999999999999999999999999999888899999999999999999999887655432 35
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHH
Q psy14654 80 AYADRFKAGFTHCAAEVSQYLAS 102 (122)
Q Consensus 80 ~~~~~f~~Gy~~C~~Ev~~fL~~ 102 (122)
...+.|++||++|+.||.+||+.
T Consensus 103 ~~~d~f~~Gf~ec~~EVsr~ls~ 125 (250)
T KOG4304|consen 103 LPVDSFRAGFRECAAEVSRYLSI 125 (250)
T ss_pred ccchhhhccHHHHHHHHHHHHhh
Confidence 66899999999999999999975
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.53 E-value=6.2e-15 Score=92.19 Aligned_cols=55 Identities=35% Similarity=0.553 Sum_probs=48.8
Q ss_pred hhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHH
Q psy14654 11 PEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLR 68 (122)
Q Consensus 11 RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~ 68 (122)
||..|...||+||++||.+|++|+.+||.+.. ....|++|++||+.||+||+.||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~---~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSA---GSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHC---CTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhc---cccccCCHHHHHHHHHHHHHHhC
Confidence 57789999999999999999999999999631 23488999999999999999986
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.44 E-value=1.3e-13 Score=86.33 Aligned_cols=56 Identities=34% Similarity=0.459 Sum_probs=50.5
Q ss_pred chhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHh
Q psy14654 10 YPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70 (122)
Q Consensus 10 ~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~ 70 (122)
.+|..|+..||+||++||.+|++|+.+||... ...|++|++||++||+||+.|+..
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~~ 58 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQEL 58 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999853 248999999999999999999764
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=2e-12 Score=79.56 Aligned_cols=50 Identities=38% Similarity=0.591 Sum_probs=44.6
Q ss_pred hHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 17 ~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
..||+||++||.+|++|+.+||.+. ...|++|++||..||+||+.|+...
T Consensus 2 ~~Er~RR~~~n~~~~~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~~~ 51 (53)
T smart00353 2 ARERRRRRKINEAFDELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQEEL 51 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999753 2489999999999999999997653
No 5
>KOG1318|consensus
Probab=99.03 E-value=1.8e-10 Score=98.23 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=55.2
Q ss_pred chhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy14654 7 EVVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 7 ~~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~ 72 (122)
+...||..|.+||||||+.||+.|.+|..|||.|.. ...|+.|..||..+|+|++.|++...
T Consensus 229 rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~----~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 229 RDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNS----EDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCc----chhhcccchhhHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999853 34899999999999999999988654
No 6
>KOG1319|consensus
Probab=98.88 E-value=2.2e-09 Score=84.11 Aligned_cols=85 Identities=24% Similarity=0.272 Sum_probs=66.2
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccC------CCcchhh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLG------LTPEAAY 81 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~------~~~~~~~ 81 (122)
+..||..|...|++|||-||...+.|+.|||.|...++. .-|+.||-||..|++|+..|..+...+ +..++.+
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~-g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtA 137 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSI-GQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTA 137 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999876543 349999999999999999998776421 2223445
Q ss_pred HHHHHHHHHHHH
Q psy14654 82 ADRFKAGFTHCA 93 (122)
Q Consensus 82 ~~~f~~Gy~~C~ 93 (122)
+.....||.+-+
T Consensus 138 L~iIk~~YEqM~ 149 (229)
T KOG1319|consen 138 LKIIKVNYEQMV 149 (229)
T ss_pred HHHHHHHHHHHH
Confidence 566667775433
No 7
>KOG3561|consensus
Probab=98.85 E-value=3.2e-09 Score=96.63 Aligned_cols=59 Identities=25% Similarity=0.423 Sum_probs=52.6
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~ 70 (122)
....+.++..+||||||.+|..|+||.+|||.|.. ...|+||-.||++||.|||.+...
T Consensus 17 ~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~----~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 17 DRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNAS----LSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhhhcchh----cccCchHHHHHHHHHHHHHHHhhh
Confidence 44557778999999999999999999999999865 358999999999999999999775
No 8
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=98.31 E-value=5.9e-07 Score=54.12 Aligned_cols=22 Identities=36% Similarity=0.871 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHhH
Q psy14654 83 DRFKAGFTHCAAEVSQYLASSM 104 (122)
Q Consensus 83 ~~f~~Gy~~C~~Ev~~fL~~~~ 104 (122)
++|++||++|+.||.+||++..
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~ 22 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVE 22 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHHhcCC
Confidence 4799999999999999997643
No 9
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=98.17 E-value=1.2e-06 Score=53.11 Aligned_cols=21 Identities=38% Similarity=0.882 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHh
Q psy14654 83 DRFKAGFTHCAAEVSQYLASS 103 (122)
Q Consensus 83 ~~f~~Gy~~C~~Ev~~fL~~~ 103 (122)
++|++||++|+.||.+||++.
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~ 21 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQL 21 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcC
Confidence 369999999999999999864
No 10
>KOG3560|consensus
Probab=98.16 E-value=1.3e-06 Score=77.45 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=39.9
Q ss_pred HHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHH
Q psy14654 19 ERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKL 67 (122)
Q Consensus 19 EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l 67 (122)
-||-|||+|..|+-|.+|||-. ...++||||.+||.++|.||+.-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfp----qdiisKLDkLSVLRLSVSyLr~K 77 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFP----QDIISKLDKLSVLRLSVSYLRVK 77 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCC----HHHHhhhhhhhhhhhhHHHHHHH
Confidence 6899999999999999999863 34579999999999999999853
No 11
>KOG0561|consensus
Probab=97.74 E-value=3.9e-05 Score=64.11 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=47.9
Q ss_pred hhchhcccch---HHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy14654 8 VVYPEVMKPM---LERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 8 ~~~RK~~k~~---~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~ 72 (122)
...|++++-+ -||||=.-||..|..||.|||..- | .||.||.||+.|.+||-+|.+++.
T Consensus 54 D~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~e---G---EKLSKAAILQQTa~yI~~Le~~Kt 115 (373)
T KOG0561|consen 54 DPERRMRREIANSNERRRMQSINAGFQSLRALLPRKE---G---EKLSKAAILQQTADYIHQLEGHKT 115 (373)
T ss_pred CHHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCccc---c---hhhHHHHHHHHHHHHHHHHHhccc
Confidence 3445544433 388888999999999999999752 2 799999999999999999987764
No 12
>KOG2483|consensus
Probab=97.22 E-value=0.00057 Score=54.87 Aligned_cols=61 Identities=21% Similarity=0.414 Sum_probs=48.7
Q ss_pred chhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy14654 7 EVVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 7 ~~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~ 72 (122)
.....+..|..+||+|||-|-.||+.||.+||..-. ...=.-+.||..++.|++.|+....
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~-----~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNG-----ETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCC-----cchhhhhHhhhhHHHHHHHHHhHHH
Confidence 455667788899999999999999999999998422 1222279999999999999976543
No 13
>KOG4029|consensus
Probab=96.86 E-value=0.0005 Score=54.01 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=47.4
Q ss_pred hhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy14654 11 PEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 11 RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~ 72 (122)
++......|+.|=.-+|..+.+|+.+||..... ..|+.|.|+|..||+||+.|+.-..
T Consensus 109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~----~kklSKveTLr~A~~YI~~L~~lL~ 166 (228)
T KOG4029|consen 109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQ----SKKLSKVETLRLATSYIRYLTKLLA 166 (228)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCc----ccccCcccchHHHHHHHHHHHHHhc
Confidence 333444559999999999999999999986431 4899999999999999999977543
No 14
>KOG2588|consensus
Probab=96.66 E-value=0.0016 Score=60.85 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=50.8
Q ss_pred chhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy14654 10 YPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 10 ~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~ 72 (122)
-+|..|.++|||=|--||+.+.|||.+|+.. ..|+-|..+|.-+++|++.++....
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-------~aKl~kSavLr~ai~~i~dl~~~nq 330 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGT-------EAKLNKSAVLRKAIDYIEDLQGYNQ 330 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCcc-------HhhhhhhhhHHHHHHHHHHhhcccc
Confidence 5789999999999999999999999999974 3899999999999999999977653
No 15
>KOG3960|consensus
Probab=96.47 E-value=0.0049 Score=50.51 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=44.2
Q ss_pred hchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy14654 9 VYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRR 69 (122)
Q Consensus 9 ~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~ 69 (122)
.+|+..-.+-||||=.++|+.|+.||.=--. +.+-+|-|.+||.-+|+||..||.
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~------NPNQRLPKVEILRsAI~YIE~Lq~ 170 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSS------NPNQRLPKVEILRSAIRYIERLQA 170 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CccccccHHHHHHHHHHHHHHHHH
Confidence 3455556788999999999999999875322 235789999999999999999865
No 16
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.02 E-value=0.016 Score=40.48 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=39.2
Q ss_pred HHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 24 ARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 24 ~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
|-||+-+..|+.|||+.... -...|+.-+.+|+.|..||+.|++..
T Consensus 20 dqi~dLvsKLq~llPe~r~~--r~s~k~saskvLqEtC~YIrsLhrEv 65 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDS--RRSDKVSAARVLQDTCNYIRNLHREV 65 (93)
T ss_pred HHHHHHHHHHHHHChHHHhh--hccccccHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999997542 23479999999999999999998754
No 17
>KOG3558|consensus
Probab=94.89 E-value=0.02 Score=52.36 Aligned_cols=45 Identities=31% Similarity=0.401 Sum_probs=37.1
Q ss_pred HHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHH
Q psy14654 19 ERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKL 67 (122)
Q Consensus 19 EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l 67 (122)
-|=||-+-|.-|.+|+.+||-. ....+.||||.|+.+||.|||--
T Consensus 54 ARsRRsKEn~~FyeLa~~lPlp----~aisshLDkaSimRLtISyLRlr 98 (768)
T KOG3558|consen 54 ARSRRSKENEEFYELAKLLPLP----AAISSHLDKASIMRLTISYLRLR 98 (768)
T ss_pred hhhhcccchHHHHHHHHhCCCc----chhhhhhhhHHHHHHHHHHHHHH
Confidence 3458888999999999999832 23358999999999999999864
No 18
>KOG3910|consensus
Probab=93.89 E-value=0.12 Score=46.24 Aligned_cols=66 Identities=26% Similarity=0.259 Sum_probs=50.3
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhcc-CCCc
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSL-GLTP 77 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~-~~~~ 77 (122)
+..|++....-||-|=.-||+.|.||-.|..-+.+.+.. -.|.-||.++|..|-.|.+|... .+++
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKp----QTKLgILhqAVsVIlsLEQQVRERNLNP 589 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKP----QTKLGILHQAVSVILSLEQQVRERNLNP 589 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCc----chhhhHHHHHHHHHHHHHHHHHHccCCh
Confidence 445666666777777778999999999999887764432 46788999999999999877654 3444
No 19
>KOG3559|consensus
Probab=91.84 E-value=0.15 Score=44.78 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=39.8
Q ss_pred hHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHH
Q psy14654 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKL 67 (122)
Q Consensus 17 ~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l 67 (122)
...+.||+.-|-.+.||..+||-+... .+.+|||.|+.+|-.|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AI----tsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAI----TSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhh----hhccchhhhhhHHHHHHHHH
Confidence 345779999999999999999876442 36699999999999999964
No 20
>KOG4395|consensus
Probab=88.69 E-value=0.72 Score=38.03 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=48.0
Q ss_pred hchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHh
Q psy14654 9 VYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70 (122)
Q Consensus 9 ~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~ 70 (122)
..|+..-+..|+||=--+|..|+.|+..+|+- ....||.|-+-|.|+-.|+-.|-.-
T Consensus 172 ~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~-----~~d~~LSkyetLqmaq~yi~~l~~~ 228 (285)
T KOG4395|consen 172 SHRRLAANARERRRMNGLNSAFDRLRLVVPDG-----DSDKKLSKYETLQMAQGYILALGCL 228 (285)
T ss_pred HhhhcccchHHHHHhhhHHHHHHHHHHhcCCC-----CccchhhhhhHHHHHHHHHhhhHHh
Confidence 35667777889999999999999999999873 3458999999999999999887543
No 21
>PF14071 YlbD_coat: Putative coat protein
Probab=73.17 E-value=21 Score=26.34 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHhHHHh
Q psy14654 50 KLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFTHCAAEVSQYLASS 103 (122)
Q Consensus 50 KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f~~Gy~~C~~Ev~~fL~~~ 103 (122)
.-+|.|.+...+.+|+.+ +...+..+.+.++..+.-|..+|+..
T Consensus 60 ~~~~~d~~~ql~~~vKkm----------D~nq~q~hl~~~sqai~~vQ~~l~qF 103 (124)
T PF14071_consen 60 TEKKNDWMSQLLSMVKKM----------DVNQMQKHLNNVSQAIGSVQQVLSQF 103 (124)
T ss_pred ccchhHHHHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999986 35567788899999999999999885
No 22
>PF15392 Joubert: Joubert syndrome-associated
Probab=64.49 E-value=45 Score=28.38 Aligned_cols=87 Identities=10% Similarity=0.141 Sum_probs=49.9
Q ss_pred cchhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHH
Q psy14654 6 IEVVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRF 85 (122)
Q Consensus 6 ~~~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f 85 (122)
++..-||-.+--|.|+|++|+-..|.+|..+-...-. +-.+ +.+-+-||-+=|+..+.-+.. .+.-.+
T Consensus 51 RtekERrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~---PF~p---~~~p~~~TSreIrl~QK~K~E------KdRllL 118 (329)
T PF15392_consen 51 RTEKERREIQAWMKRKRKERMAEYLKQLAEKREQEHK---PFCP---RSNPFYMTSREIRLRQKMKEE------KDRLLL 118 (329)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCCC---CCCCCcccHHHHHHHHHHHHH------HHHHHH
Confidence 4556677777789999999999999999887654211 1111 222244666666655444321 112223
Q ss_pred HHHHHHHHHHHHHhHHHhH
Q psy14654 86 KAGFTHCAAEVSQYLASSM 104 (122)
Q Consensus 86 ~~Gy~~C~~Ev~~fL~~~~ 104 (122)
.+-|.+-+.++...+..++
T Consensus 119 seH~s~RvsQAysLMnElL 137 (329)
T PF15392_consen 119 SEHYSRRVSQAYSLMNELL 137 (329)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554443
No 23
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=56.46 E-value=44 Score=25.04 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHhH
Q psy14654 49 SKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFTHCAAEVSQYL 100 (122)
Q Consensus 49 ~KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f~~Gy~~C~~Ev~~fL 100 (122)
+-.=+..||++.-+|+|.|-.......+++ ...-.+||.++-+-++=.|
T Consensus 40 s~~LR~QILdLSkrYVKaLAeEn~~~~dgp---~~~smagYaDLKktiAVLL 88 (138)
T PF15027_consen 40 SAELREQILDLSKRYVKALAEENKNVVDGP---YGASMAGYADLKKTIAVLL 88 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---cchhhHHHHHHhhhhhhhh
Confidence 445578999999999999976654433321 1222478866655444333
No 24
>KOG3898|consensus
Probab=55.00 E-value=6.9 Score=31.62 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=40.0
Q ss_pred hHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 17 ~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
.=|++|=--+|+.|+.|+..||.. ....||-|.+.|..+-.|+-.++.-.
T Consensus 78 aRER~RMH~LNdAld~LReviP~~-----~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 78 ARERTRMHDLNDALDALREVIPHG-----LHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred chhhccccchhHHHHHhHhhccCc-----CCCCCCCcchhHHhhhcchhhhcccc
Confidence 346655566899999999999972 23489999999999999999987544
No 25
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.56 E-value=89 Score=21.89 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHH
Q psy14654 22 RRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFTHCAAEVS 97 (122)
Q Consensus 22 RR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f~~Gy~~C~~Ev~ 97 (122)
=++||++.++-|..-|.......+.+ + -=.++++|+-.|+..-.--...|---.+-..-.|..|+-+...++.
T Consensus 6 l~ekiekYi~~leeaL~~~k~~~~~~-s--~ae~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~g~lDag~~lG 78 (90)
T COG1849 6 LAEKIEKYIELLEEALKEIKSRPGDR-S--AAEDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAHGWLDAGVRLG 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc-h--HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999988887754333221 2 3447999999999875433322200012233455566655555443
No 26
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=47.23 E-value=33 Score=28.07 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhhccCCCCCCCCCCCCC
Q psy14654 82 ADRFKAGFTHCAAEVSQYLASSMQQHQQQPSTEPTIDPSSG 122 (122)
Q Consensus 82 ~~~f~~Gy~~C~~Ev~~fL~~~~~~h~q~~~~~p~~~~~~~ 122 (122)
...|-.||..|+.+|.-........ |+|++.|+++..+|
T Consensus 150 f~tfg~Gw~~rV~~vr~~~~a~~t~--~~~~p~~~~~~~~~ 188 (252)
T COG3926 150 FGTFGKGWTARVAEVRAIAQAWATD--QVPQPAPFPNGGQG 188 (252)
T ss_pred HhhhcchHHHHHHHHHHHHHHhhhc--cCCCCCCCCCCCCC
Confidence 4578899999999987666655444 56666666665443
No 27
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=46.80 E-value=68 Score=19.81 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHH
Q psy14654 81 YADRFKAGFTHCAAEV 96 (122)
Q Consensus 81 ~~~~f~~Gy~~C~~Ev 96 (122)
....|+.||..|+..+
T Consensus 47 ~e~afr~G~~d~l~~~ 62 (64)
T PF12644_consen 47 SEEAFRQGFRDGLRLL 62 (64)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4578999999998753
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.56 E-value=50 Score=23.45 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=34.3
Q ss_pred HHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhcc------------CCC-cchhhHHHHHHHHHHH
Q psy14654 26 INRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSL------------GLT-PEAAYADRFKAGFTHC 92 (122)
Q Consensus 26 IN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~------------~~~-~~~~~~~~f~~Gy~~C 92 (122)
+...+.+||..|.. =+|...-|.+=-.+|+..-..... ... +-..-..-|.+||.-|
T Consensus 20 l~~~~~~LK~~~~~----------l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~EGFHIC 89 (107)
T PF06156_consen 20 LLEELEELKKQLQE----------LLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQEGFHIC 89 (107)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhcCeeeC
Confidence 34455555555543 267778888888888887443211 000 1122356788999988
Q ss_pred H
Q psy14654 93 A 93 (122)
Q Consensus 93 ~ 93 (122)
-
T Consensus 90 n 90 (107)
T PF06156_consen 90 N 90 (107)
T ss_pred c
Confidence 5
No 29
>KOG4447|consensus
Probab=41.27 E-value=10 Score=29.32 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=45.7
Q ss_pred hchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHh
Q psy14654 9 VYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70 (122)
Q Consensus 9 ~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~ 70 (122)
+..+..+.+-|+.|=.-+|..|..|+.++|.. ..-|+.|.--|.++-.|+-.+-+-
T Consensus 76 q~qrv~anvrerqRtqsLn~AF~~lr~iiptl------PsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 76 QKQRVMANVRERQRTQSLNEAFAALRKIIPTL------PSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCC------CccccccccchhhcccCCchhhhc
Confidence 34566777889999999999999999999874 247899999999998888766443
No 30
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=32.41 E-value=1.4e+02 Score=21.38 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc---C-CC------cchhhHHHHHHHHHHHH
Q psy14654 51 LEKADILELTVRHLHKLRRQQSL---G-LT------PEAAYADRFKAGFTHCA 93 (122)
Q Consensus 51 lEKAdILe~TV~yLk~l~~~~~~---~-~~------~~~~~~~~f~~Gy~~C~ 93 (122)
+|...-|++--.+|+..-..-.. . .. +-..-..-|.+||.-|-
T Consensus 35 ~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~~~~~~g~~NL~~LY~EGFHICn 87 (110)
T PRK13169 35 LEENTALRLENDKLRERLEELEAEEPAKEKKKKEGEGKDNLARLYQEGFHICN 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccchHHHHHHHHHcCceecH
Confidence 67777888888888886554211 0 00 11123567899999996
No 31
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=31.55 E-value=2e+02 Score=20.67 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=17.3
Q ss_pred cchHHHhHHHHHHHhHHHHHHHHHhhH
Q psy14654 15 KPMLERKRRARINRCLDELKEIMVTSL 41 (122)
Q Consensus 15 k~~~EKrRR~RIN~~l~~Lk~Ll~~~~ 41 (122)
|-..|+.|++-| .++..|-..|.+..
T Consensus 13 re~~e~~r~ea~-~s~~~l~~~l~d~l 38 (121)
T PF06320_consen 13 REEQERARKEAI-ASAQALTNALVDHL 38 (121)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345677777776 66677777776654
No 32
>KOG3003|consensus
Probab=29.06 E-value=92 Score=25.38 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=27.1
Q ss_pred HHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHH
Q psy14654 22 RRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKL 67 (122)
Q Consensus 22 RR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l 67 (122)
=|+|.|++.+.-+..-...|-+ .=||=||||+.|+.-++.-
T Consensus 103 lr~R~~r~~edak~FaiQ~f~k-----dLleVaD~Le~a~~~v~ee 143 (236)
T KOG3003|consen 103 LRDRTIRDVEDAKKFAIQSFCK-----DLLEVADNLEKATECVKEE 143 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcchh
Confidence 3556666666655554443322 2278999999999988865
No 33
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=27.30 E-value=3e+02 Score=22.17 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=24.6
Q ss_pred HHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHH
Q psy14654 22 RRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVR 62 (122)
Q Consensus 22 RR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~ 62 (122)
=|+|||+.+..-...+-++.. ..-+++|.+|...-|.
T Consensus 104 iR~RinkGlRvAE~~i~eA~~----~~~~~~~~~i~~e~ig 140 (221)
T COG1458 104 IRERINKGLRVAEEAIREASI----ECYELEKEEIIREVVG 140 (221)
T ss_pred HHHHHHhhhhhHHHHHHHHHH----HHHHhhhhhHHHHHHH
Confidence 378999999887777766532 1245667666665554
No 34
>KOG1746|consensus
Probab=27.28 E-value=1.4e+02 Score=21.75 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHhhhccCCCCCCCCCC
Q psy14654 82 ADRFKAGFTHCAAEVSQYLASSMQQHQQQPSTEPTIDP 119 (122)
Q Consensus 82 ~~~f~~Gy~~C~~Ev~~fL~~~~~~h~q~~~~~p~~~~ 119 (122)
-.+|.+||..|+..-.=-..-..|--.|-++-.|-+.|
T Consensus 55 FNSFLSGfIscVg~fVLavclR~q~n~qn~~~f~~iSp 92 (115)
T KOG1746|consen 55 FNSFLSGFISCVGQFVLAVCLRIQVNQQNKSEFKGISP 92 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCh
Confidence 57899999999765322222233444444444444443
No 35
>KOG3582|consensus
Probab=26.42 E-value=39 Score=31.86 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=48.8
Q ss_pred hchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 9 VYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 9 ~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
++|.+.++-.|.+||.-|--+++.|-++.-.... ....|+-++.-|.-||.||-.++...
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~---l~s~k~t~~~~~q~~vhYi~~t~~e~ 708 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSS---LSSIKTTNSNSLQKTVHYINVTQQER 708 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCccc---ccchhhhccccccCceeeeeccchhc
Confidence 3788889999999999999999999888755321 23479999999999999999886544
No 36
>PHA00438 hypothetical protein
Probab=26.06 E-value=1.1e+02 Score=21.04 Aligned_cols=51 Identities=22% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCc------chhhHHHHHHHHHHHHHHHHHhHHHhH
Q psy14654 54 ADILELTVRHLHKLRRQQSLGLTP------EAAYADRFKAGFTHCAAEVSQYLASSM 104 (122)
Q Consensus 54 AdILe~TV~yLk~l~~~~~~~~~~------~~~~~~~f~~Gy~~C~~Ev~~fL~~~~ 104 (122)
-||-..+..||+-.-.......++ .....+.|.+||..-+.=.++.|...+
T Consensus 16 Pdvpraa~eyLqvrfNasYl~~sG~i~~lR~~G~SE~~IaGfl~Gl~yAs~~ldeme 72 (81)
T PHA00438 16 PDVPRAAAEYLQVRFNASYLEQSGEIRLLRQAGYSEAFIAGFLAGLQYASRTLDEME 72 (81)
T ss_pred ccccHHHHHHHHHHHhHHHHHHhhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777654433211111 122357899999888877777766544
No 37
>PHA02078 hypothetical protein
Probab=25.53 E-value=1.7e+02 Score=18.67 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHH
Q psy14654 29 CLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLR 68 (122)
Q Consensus 29 ~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~ 68 (122)
+|++|-.|+| +|+.-.|-+-++||++..
T Consensus 23 SL~~ienMmP------------~ER~Iylsll~k~lkE~n 50 (54)
T PHA02078 23 SLHELENMMP------------WEREIYAALLIQYIQEKN 50 (54)
T ss_pred CHHHHHHHhH------------HHHHHHHHHHHHHHHHHH
Confidence 4555666665 688889999999998754
No 38
>PRK09866 hypothetical protein; Provisional
Probab=25.39 E-value=2.6e+02 Score=26.41 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcc-hhhHHHHHHHHHHHHHHHHHhHHHhHhhhcc
Q psy14654 55 DILELTVRHLHKLRRQQSLGLTPE-AAYADRFKAGFTHCAAEVSQYLASSMQQHQQ 109 (122)
Q Consensus 55 dILe~TV~yLk~l~~~~~~~~~~~-~~~~~~f~~Gy~~C~~Ev~~fL~~~~~~h~q 109 (122)
.+-+.+-.|..++.+.-...++.. ......|.+.|..|+.++..-|..+...|+|
T Consensus 645 ~~~~~~~~~~~~~~~~~~~~v~~~v~~~~~~ff~~f~~~~~~~~~~l~~s~~~~q~ 700 (741)
T PRK09866 645 ALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFASCLTELQTRLRESLALRQQ 700 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445556666554433333222 2346889999999999999998877766654
No 39
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=25.23 E-value=5e+02 Score=25.20 Aligned_cols=87 Identities=16% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhcc-----CCCcchh-hHHHHHHHHHHHHHHHH
Q psy14654 24 ARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSL-----GLTPEAA-YADRFKAGFTHCAAEVS 97 (122)
Q Consensus 24 ~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~-----~~~~~~~-~~~~f~~Gy~~C~~Ev~ 97 (122)
.+||.||.+|...-.. .+ .+.|-+.--.+|..+=+...+ .+.++.. ....|..-+-+.+-++.
T Consensus 155 ~~I~~lL~~~~~~~~~---------~~--~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~ 223 (910)
T COG2352 155 REINRLLRKLDHADLS---------DE--RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLL 223 (910)
T ss_pred HHHHHHHHHhhcccch---------hH--HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888887544322 11 556655555566555333211 1111122 23344445666677777
Q ss_pred HhHHHhHhhhcc--CCCCCCCCCCCC
Q psy14654 98 QYLASSMQQHQQ--QPSTEPTIDPSS 121 (122)
Q Consensus 98 ~fL~~~~~~h~q--~~~~~p~~~~~~ 121 (122)
+=+....+.|+. -|..++|+..+|
T Consensus 224 r~~~~~~~~~~~~~~~~~~~p~~~gS 249 (910)
T COG2352 224 RELNEALQETFGELLPVEAVPLRFGS 249 (910)
T ss_pred HHHHHHHHHhcccccCCCCCcccccc
Confidence 777777888887 455556766554
No 40
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=24.01 E-value=2.8e+02 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhHh
Q psy14654 82 ADRFKAGFTHCAAEVSQYLASSMQ 105 (122)
Q Consensus 82 ~~~f~~Gy~~C~~Ev~~fL~~~~~ 105 (122)
..-|..||--|-.....||+++..
T Consensus 189 ~TFFhQGyeL~~~~~~~~~~~~~~ 212 (215)
T cd07632 189 INFFKKGAELFSKKLDSFLSSVSD 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456779999999999999998743
No 41
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=23.39 E-value=85 Score=18.01 Aligned_cols=17 Identities=29% Similarity=0.646 Sum_probs=11.4
Q ss_pred HHhHHHHHHHhHHHHHH
Q psy14654 19 ERKRRARINRCLDELKE 35 (122)
Q Consensus 19 EKrRR~RIN~~l~~Lk~ 35 (122)
=||||+-+...|++|+.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36777888888888764
No 42
>PHA01819 hypothetical protein
Probab=21.83 E-value=82 Score=22.75 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHhHhhhccCCCCCCCCC
Q psy14654 92 CAAEVSQYLASSMQQHQQQPSTEPTID 118 (122)
Q Consensus 92 C~~Ev~~fL~~~~~~h~q~~~~~p~~~ 118 (122)
--+.|..||++..|+.+|-.+.-|-|-
T Consensus 82 leqq~ttflssq~qqpqqvqqtqpdvt 108 (129)
T PHA01819 82 LEQQVTTFLSSQMQQPQQVQQTQPDVT 108 (129)
T ss_pred HHHHHHHHHHHHhhCchhhhhcCCCcc
Confidence 346789999999888877777776654
No 43
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=21.42 E-value=2.6e+02 Score=20.71 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHH
Q psy14654 80 AYADRFKAGFTHCAAEVSQYLA 101 (122)
Q Consensus 80 ~~~~~f~~Gy~~C~~Ev~~fL~ 101 (122)
...+.|..-|++|+......+.
T Consensus 118 kea~~Y~~rf~q~ltRAl~lIk 139 (157)
T PF04136_consen 118 KEAEVYLIRFRQCLTRALTLIK 139 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3467788899999988775543
No 44
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=20.86 E-value=2.5e+02 Score=18.22 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=24.8
Q ss_pred HHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy14654 19 ERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRR 69 (122)
Q Consensus 19 EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~ 69 (122)
.+.|++.|-.-++..-+++...... ....++.+.+.-+++..+|+.+.-
T Consensus 5 ~~~~k~~l~~~v~~a~~~i~~~~~~--~~~g~ls~eea~~~a~~~l~~~r~ 53 (95)
T PF08269_consen 5 LEERKEQLKNVVESAISLIESYYAQ--AQAGKLSEEEAQQQAREALRALRY 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHC---STT-----TTHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCccHHHHHHHHHHHHhcccc
Confidence 3445555555555555555443222 224789999999999999987743
Done!