Query psy14654
Match_columns 122
No_of_seqs 133 out of 501
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 17:15:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0a_A BHLH, protein (phosphat 99.8 1.1E-19 3.6E-24 117.7 4.2 60 11-71 2-61 (63)
2 4h10_A ARYL hydrocarbon recept 99.8 4.1E-19 1.4E-23 118.2 4.5 58 8-69 6-63 (73)
3 4h10_B Circadian locomoter out 99.7 1.5E-17 5E-22 110.3 3.4 58 7-71 4-61 (71)
4 1an4_A Protein (upstream stimu 99.6 3.4E-17 1.2E-21 105.5 0.5 62 8-71 2-63 (65)
5 1am9_A Srebp-1A, protein (ster 99.5 6E-15 2.1E-19 99.3 4.4 57 8-71 3-59 (82)
6 4ati_A MITF, microphthalmia-as 99.5 9.2E-15 3.1E-19 104.6 4.3 60 8-71 24-83 (118)
7 1nkp_B MAX protein, MYC proto- 99.4 7.9E-14 2.7E-18 93.4 3.8 56 10-71 1-56 (83)
8 1hlo_A Protein (transcription 99.4 1.2E-13 4.2E-18 92.1 4.5 58 8-71 9-66 (80)
9 4f3l_A Mclock, circadian locom 99.3 5.1E-13 1.7E-17 107.8 3.7 57 8-71 9-65 (361)
10 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 1.8E-12 6.3E-17 105.9 4.7 59 7-69 9-67 (387)
11 1nkp_A C-MYC, MYC proto-oncoge 99.2 5.1E-12 1.7E-16 86.1 4.1 58 9-71 4-61 (88)
12 3u5v_A Protein MAX, transcript 99.2 2.4E-11 8.1E-16 81.1 5.9 59 9-72 3-62 (76)
13 1nlw_A MAD protein, MAX dimeri 99.1 8.9E-11 3E-15 78.8 3.5 55 12-71 2-56 (80)
14 1mdy_A Protein (MYOD BHLH doma 98.9 8.2E-10 2.8E-14 72.2 2.6 57 8-70 9-65 (68)
15 2ql2_B Neurod1, neurogenic dif 98.9 2.1E-09 7.1E-14 68.7 4.1 56 11-71 2-57 (60)
16 2lfh_A DNA-binding protein inh 98.7 2.6E-09 8.9E-14 70.1 1.3 48 17-69 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.4 2E-07 6.9E-12 63.2 3.1 46 23-72 4-49 (83)
18 4aya_A DNA-binding protein inh 98.1 1.5E-06 5.1E-11 60.4 3.0 62 20-90 34-95 (97)
19 2db7_A Hairy/enhancer-OF-split 98.0 3.9E-06 1.3E-10 54.2 3.3 27 77-103 11-38 (64)
20 2pmr_A Uncharacterized protein 66.6 25 0.00086 23.2 6.7 66 23-92 6-71 (87)
21 2oo2_A Hypothetical protein AF 50.7 38 0.0013 22.3 5.3 63 22-94 7-69 (86)
22 2c5z_A SET domain protein 2; S 38.2 52 0.0018 22.6 4.5 33 86-120 40-72 (104)
23 3axj_B TRAX, translin associat 34.6 90 0.0031 24.5 6.1 72 22-97 47-125 (298)
24 1wji_A Tudor domain containing 32.7 41 0.0014 20.6 3.0 27 93-122 37-63 (63)
25 2lkw_A Membrane fusion protein 30.4 17 0.00058 18.8 0.8 8 109-116 9-16 (26)
26 4ehp_B Catenin alpha-1; adhere 29.4 47 0.0016 23.0 3.2 16 49-64 85-100 (111)
27 1ufz_A Hypothetical protein BA 23.5 42 0.0015 22.2 2.0 20 21-40 29-48 (83)
28 1xwj_B Talin, metavinculin; ce 21.7 85 0.0029 15.9 2.6 18 86-103 7-24 (26)
29 1p3q_Q VPS9P, vacuolar protein 20.6 76 0.0026 19.2 2.6 23 17-39 3-25 (54)
No 1
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.78 E-value=1.1e-19 Score=117.74 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=54.1
Q ss_pred hhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 11 PEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 11 RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
||.+|+++|++||+|||.+|++|+.|||.+...++. .+|++||+||++||+||+.|+++.
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~-~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNV-SAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSC-CCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCccccccc-CCcccHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999998775432 489999999999999999998764
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.76 E-value=4.1e-19 Score=118.20 Aligned_cols=58 Identities=28% Similarity=0.492 Sum_probs=51.7
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRR 69 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~ 69 (122)
...|+.+|+++||+||+|||.+|++|+.|||.+.. ..+|+|||+||++||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~----~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT----CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHcccccc----ccccccHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999999752 24899999999999999999853
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=110.34 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=51.8
Q ss_pred chhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 7 EVVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 7 ~~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
....+|.+|+++||+||++||.+|.+|++|||. ...|++|++||++||+||+.|+...
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-------~~~K~dK~sIL~~aI~yik~Lq~~~ 61 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKEIT 61 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-------CCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-------CCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 456688899999999999999999999999994 2379999999999999999998764
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=3.4e-17 Score=105.49 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=53.1
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
...+|..|.++||+||++||.+|.+|+.|||.+.... ...|++||+||++||+||+.|+.+.
T Consensus 2 d~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~--~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 2 DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMES--TKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCS--STTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred cHHHHHhhchHHHHHHHHHHHHHHHHHHHCcCccccc--ccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999864321 1268999999999999999998754
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.52 E-value=6e-15 Score=99.33 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=51.8
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
...||.+|.++||+||++||.+|.+|++|||.+ ..|++||+||..||+||+.|+.+.
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~~~ 59 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSN 59 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999962 389999999999999999998765
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.50 E-value=9.2e-15 Score=104.56 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=46.7
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
...+|.+|.++||+||++||.+|.+|+.|||.+... ..|++||+||++||+||+.|+.+.
T Consensus 24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~ 83 (118)
T 4ati_A 24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQ 83 (118)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999999999999987432 369999999999999999998765
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.42 E-value=7.9e-14 Score=93.45 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=50.5
Q ss_pred chhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 10 YPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 10 ~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
.||..|...||+||+.||.+|++|+.+||.+. ..|++|++||..||+||+.|+...
T Consensus 1 ~rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 56 (83)
T 1nkp_B 1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 56 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999853 378999999999999999998664
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=1.2e-13 Score=92.14 Aligned_cols=58 Identities=24% Similarity=0.337 Sum_probs=52.0
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
...+|..|...||+||+.||.+|++|+.+||.+. ..|++|++||..||.||+.|+...
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~ 66 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999753 268999999999999999998764
No 9
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.33 E-value=5.1e-13 Score=107.80 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=42.6
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
...++.+|.++|||||++||..|.+|+.|||. ..+|||||+||++||.||+.++...
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 45677888999999999999999999999992 2489999999999999999987643
No 10
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.28 E-value=1.8e-12 Score=105.88 Aligned_cols=59 Identities=27% Similarity=0.486 Sum_probs=51.1
Q ss_pred chhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy14654 7 EVVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRR 69 (122)
Q Consensus 7 ~~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~ 69 (122)
+...+|.+|..+|||||++||..|.+|+.|||.+.. ..+|+||++||++||.|||.++.
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~----~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----CSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCc----cccccCHHHHHHHHHHHHHHhhc
Confidence 345678889999999999999999999999998732 35899999999999999999874
No 11
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.24 E-value=5.1e-12 Score=86.15 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=51.6
Q ss_pred hchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 9 VYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 9 ~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
..++..|..+|++||+.||.+|..|+.+||... ...|++|++||..|++||+.|+...
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-----~~~K~sK~~iL~~A~~YI~~L~~~~ 61 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQAEE 61 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-----TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999852 2379999999999999999998765
No 12
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.20 E-value=2.4e-11 Score=81.10 Aligned_cols=59 Identities=31% Similarity=0.333 Sum_probs=46.4
Q ss_pred hchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhh-HHHHHHHHHHHHHHHHHHhhc
Q psy14654 9 VYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKL-EKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 9 ~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~Kl-EKAdILe~TV~yLk~l~~~~~ 72 (122)
..|+..+...|++||+.||.+|++|+.+||.+.. ..|. .|++||..||+||+.|+++..
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~-----~~K~~sK~~IL~~AieYI~~Lq~~l~ 62 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLK-----SDKAQTKLLILQQAVQVILGLEQQVR 62 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCC-----ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999997543 1344 799999999999999988764
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.05 E-value=8.9e-11 Score=78.81 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=48.2
Q ss_pred hcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 12 EVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 12 K~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
+..|..+||+||+.||.||+.|+++||.. ....|..|++||..|++||+.|+...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~-----~~~~k~sk~~iL~kA~~yI~~L~~~~ 56 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG-----PDSSRHTTLSLLTKAKLHIKKLEDSD 56 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCC-----SSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999974 22478999999999999999998765
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.87 E-value=8.2e-10 Score=72.22 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=49.5
Q ss_pred hhchhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHh
Q psy14654 8 VVYPEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70 (122)
Q Consensus 8 ~~~RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~ 70 (122)
...++..+...|++|+.-||.+|+.|+.+||.. + ..|+.|++||..|++||..|+..
T Consensus 9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~-----~-~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSN-----P-NQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC-----T-TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC-----C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 345677788999999999999999999999963 1 37999999999999999999764
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.85 E-value=2.1e-09 Score=68.66 Aligned_cols=56 Identities=23% Similarity=0.306 Sum_probs=48.3
Q ss_pred hhcccchHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhh
Q psy14654 11 PEVMKPMLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQ 71 (122)
Q Consensus 11 RK~~k~~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~ 71 (122)
|+.....-|++|+.-||.+|+.|+.+||.. +...|+.|.+||.+|+.||..|+..-
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~-----~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCY-----SKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-----CSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCC-----CCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999974 22479999999999999999998653
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.72 E-value=2.6e-09 Score=70.15 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=42.0
Q ss_pred hHHHhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHH
Q psy14654 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRR 69 (122)
Q Consensus 17 ~~EKrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~ 69 (122)
.-|++|+..||.+|+.||.+||... ...||.|.+||.++++||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p-----~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVP-----RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCC-----TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCccHHHHHHHHHHHHHHHHc
Confidence 4588899999999999999999842 24799999999999999999973
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.36 E-value=2e-07 Score=63.21 Aligned_cols=46 Identities=30% Similarity=0.397 Sum_probs=40.1
Q ss_pred HHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhc
Q psy14654 23 RARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72 (122)
Q Consensus 23 R~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~ 72 (122)
|+-||+.+.+|..|||.+.. ...|+.|+.||..||+||+.|++...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~----~~~k~nKg~IL~ksvdYI~~Lq~e~~ 49 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSND----PDMRWNKGTILKASVDYIRKLQREQQ 49 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCC----TTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhHHHhhhhhhccCCCCCC----cccCcchHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999998632 24899999999999999999987653
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.10 E-value=1.5e-06 Score=60.42 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=42.0
Q ss_pred HhHHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHH
Q psy14654 20 RKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFT 90 (122)
Q Consensus 20 KrRR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f~~Gy~ 90 (122)
+.|=.-||.+|+.||.+||... ...||.|.+||.+++.||..|+..-...- .....|.+||.
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~~~~----~~~~~~~~g~~ 95 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALDSHL----KPSFLVQSGDI 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHHTTT----STTCC------
T ss_pred HHHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCC----CCcchhhcCcc
Confidence 4455679999999999999742 24899999999999999999987654321 11224667775
No 19
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=98.00 E-value=3.9e-06 Score=54.18 Aligned_cols=27 Identities=37% Similarity=0.671 Sum_probs=22.6
Q ss_pred cchhhHHHHHH-HHHHHHHHHHHhHHHh
Q psy14654 77 PEAAYADRFKA-GFTHCAAEVSQYLASS 103 (122)
Q Consensus 77 ~~~~~~~~f~~-Gy~~C~~Ev~~fL~~~ 103 (122)
+.......|++ ||++|+.||.+||++.
T Consensus 11 d~~~~~~~yrs~Gf~eC~~EV~rfLs~~ 38 (64)
T 2db7_A 11 DAHALAMDYRSLGFRECLAEVARYLSII 38 (64)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 33555789995 9999999999999985
No 20
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=66.57 E-value=25 Score=23.23 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=38.4
Q ss_pred HHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHH
Q psy14654 23 RARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFTHC 92 (122)
Q Consensus 23 R~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f~~Gy~~C 92 (122)
++||.+.+.-|+.-|...... . ... .=.+|++|+-.|++.-.--...+-.-.+...-.|..|+-++
T Consensus 6 ~Eki~kYi~~leeaL~~i~~~--~-l~~-~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwLDA 71 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKSI--K-LSD-DEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGLLDS 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--C-CCH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccc--c-chH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 678888888888887664210 0 011 33589999999999843332222100122334566666666
No 21
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=50.73 E-value=38 Score=22.31 Aligned_cols=63 Identities=10% Similarity=-0.024 Sum_probs=37.9
Q ss_pred HHHHHHHhHHHHHHHHHhhHhhccccchhhHHHHHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHH
Q psy14654 22 RRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFTHCAA 94 (122)
Q Consensus 22 RR~RIN~~l~~Lk~Ll~~~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~~~~~~~~~~~~~~f~~Gy~~C~~ 94 (122)
=++||.+.+.-|+.-|.... . -.+|++|+-.|++.-.--...+-.-.+...-.|..|+-++..
T Consensus 7 L~Eki~kYi~~l~eaL~~i~--------~--a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~GwLDAg~ 69 (86)
T 2oo2_A 7 LRRETLKWLERIEERVKEIE--------G--DEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAWAWLEIGL 69 (86)
T ss_dssp HHHHHHHHHHHHHHHGGGEE--------E--CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh--------h--HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 36888888888877775531 1 358999999999984333222210012233455566665544
No 22
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II, transcription, CTD, SET2 histone methyltransferase; NMR {Saccharomyces cerevisiae}
Probab=38.21 E-value=52 Score=22.62 Aligned_cols=33 Identities=18% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhHHHhHhhhccCCCCCCCCCCC
Q psy14654 86 KAGFTHCAAEVSQYLASSMQQHQQQPSTEPTIDPS 120 (122)
Q Consensus 86 ~~Gy~~C~~Ev~~fL~~~~~~h~q~~~~~p~~~~~ 120 (122)
++-+-.|+.|+..-|.+.+-.+.. +.+||..+|
T Consensus 40 rDniK~CArdiVk~L~~KElKk~~--s~~pp~ELs 72 (104)
T 2c5z_A 40 HENIKQCAKDIVKILTTKELKKDS--SRAPPDDLT 72 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCT--TCCCCSSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC--CCCCccccC
Confidence 366789999999999998887763 334444443
No 23
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=34.62 E-value=90 Score=24.55 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=38.9
Q ss_pred HHHHHHHhHHHHHHHHHh---hHhhccccchhhHHHHHHHHHHHHHHHHHHhh--cc--CCCcchhhHHHHHHHHHHHHH
Q psy14654 22 RRARINRCLDELKEIMVT---SLQAEGENVSKLEKADILELTVRHLHKLRRQQ--SL--GLTPEAAYADRFKAGFTHCAA 94 (122)
Q Consensus 22 RR~RIN~~l~~Lk~Ll~~---~~~~~~~~~~KlEKAdILe~TV~yLk~l~~~~--~~--~~~~~~~~~~~f~~Gy~~C~~ 94 (122)
+|+||-+.-.++-..--. ..+.- ...+-++..||+.+-..|..+.... .. .+. ....-.|..+|+.|++
T Consensus 47 ~RErIikisRdIt~~Sk~~If~Lhr~--~~~~~~~~~~l~eA~~~l~~i~~~~~~~la~~l~--~~~~y~y~~~~s~~lQ 122 (298)
T 3axj_B 47 RHERIVKLSRDITIESKRIIFLLHSI--DSRKQNKEKVLEEARQRLNKLIAVNFRAVALELR--DQDVYQFRSSYSPGLQ 122 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--CSCGGGHHHHHHHHHHHHHHHHHTHHHHHHHHTT--TSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ccCHHHHHhccCHHHH
Confidence 778876665554333222 22211 1123457789999988888876532 11 111 1122356677777777
Q ss_pred HHH
Q psy14654 95 EVS 97 (122)
Q Consensus 95 Ev~ 97 (122)
|..
T Consensus 123 E~V 125 (298)
T 3axj_B 123 EFI 125 (298)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 24
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.67 E-value=41 Score=20.57 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=16.6
Q ss_pred HHHHHHhHHHhHhhhccCCCCCCCCCCCCC
Q psy14654 93 AAEVSQYLASSMQQHQQQPSTEPTIDPSSG 122 (122)
Q Consensus 93 ~~Ev~~fL~~~~~~h~q~~~~~p~~~~~~~ 122 (122)
+.....||-.. -...+...||+.+|+|
T Consensus 37 ve~A~e~L~~~---~~~~~~~~p~~~~~~~ 63 (63)
T 1wji_A 37 LEAALNVLLTS---NKQKPVMGPPSGPSSG 63 (63)
T ss_dssp HHHHHHHHHHH---SSCCCCCSSCCCSSCC
T ss_pred HHHHHHHHHHC---CCCcccCCCCCCCCCC
Confidence 44455666543 2344567788888887
No 25
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=30.42 E-value=17 Score=18.84 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=3.9
Q ss_pred cCCCCCCC
Q psy14654 109 QQPSTEPT 116 (122)
Q Consensus 109 q~~~~~p~ 116 (122)
|+|+.||+
T Consensus 9 qppapppn 16 (26)
T 2lkw_A 9 QPPAPPPN 16 (26)
T ss_pred cCCCcCCC
Confidence 45554444
No 26
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=29.42 E-value=47 Score=23.00 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHHHH
Q psy14654 49 SKLEKADILELTVRHL 64 (122)
Q Consensus 49 ~KlEKAdILe~TV~yL 64 (122)
++-|..+=|+.+|..+
T Consensus 85 g~ke~se~L~~aI~km 100 (111)
T 4ehp_B 85 GRKERSDALNSAIDKM 100 (111)
T ss_dssp CCCCCCCHHHHHHHHH
T ss_pred cccccchhHHHHHHHH
Confidence 3444445555555443
No 27
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=23.47 E-value=42 Score=22.15 Aligned_cols=20 Identities=30% Similarity=0.680 Sum_probs=17.1
Q ss_pred hHHHHHHHhHHHHHHHHHhh
Q psy14654 21 KRRARINRCLDELKEIMVTS 40 (122)
Q Consensus 21 rRR~RIN~~l~~Lk~Ll~~~ 40 (122)
--++|+..||+++|..|-++
T Consensus 29 ~d~arL~SCLd~iR~VlGds 48 (83)
T 1ufz_A 29 IDQARLYSCLDHMREVLGDA 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 35789999999999999774
No 28
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=21.74 E-value=85 Score=15.90 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhHHHh
Q psy14654 86 KAGFTHCAAEVSQYLASS 103 (122)
Q Consensus 86 ~~Gy~~C~~Ev~~fL~~~ 103 (122)
.++|+.+...|.++|+.+
T Consensus 7 ~~~~r~v~ekV~~vlaaL 24 (26)
T 1xwj_B 7 IESARKVSEKVSHVLAAL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478899999999999874
No 29
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.59 E-value=76 Score=19.17 Aligned_cols=23 Identities=9% Similarity=0.302 Sum_probs=18.7
Q ss_pred hHHHhHHHHHHHhHHHHHHHHHh
Q psy14654 17 MLERKRRARINRCLDELKEIMVT 39 (122)
Q Consensus 17 ~~EKrRR~RIN~~l~~Lk~Ll~~ 39 (122)
+.++-+|.--+..+++|+.|.|.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 34566777779999999999987
Done!