RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14654
(122 letters)
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 48.6 bits (116), Expect = 1e-09
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
+ER+RR +IN + +L +I+ S + S K IL ++ +LR+
Sbjct: 11 EVERRRRDKINNWIVQLSKIIPDSSMESTK--SGQSKGGILSKASDYIQELRQS 62
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 46.0 bits (109), Expect = 1e-08
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQS 72
E+ RR R+ L EL ++ + + + + KA +E R++ L++ S
Sbjct: 8 HAEQARRNRLAVALHELASLIPAEWKQQNVS-AAPSKATTVEAACRYIRHLQQNGS 62
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 39.5 bits (92), Expect = 6e-06
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
LERKRR I L++ + K +A IL+ ++ +RR+
Sbjct: 8 ALERKRRDHIKDSFHSLRDSV------PSLQGEKASRAQILDKATEYIQYMRRK 55
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 37.2 bits (86), Expect = 4e-05
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
+E++ R+ IN + ELK+++V + KL K+ +L + ++ L+
Sbjct: 12 AIEKRYRSSINDKIIELKDLVVGTEA-------KLNKSAVLRKAIDYIRFLQHS 58
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 36.8 bits (85), Expect = 6e-05
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
+E+ RRA + L++LK ++ G + S+ +L H+ KL
Sbjct: 7 EMEKNRRAHLRLSLEKLKGLVPL-----GPDSSRHTTLSLLTKAKLHIKKLEDS 55
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 35.6 bits (82), Expect = 1e-04
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
M ER+R +++N + LK ++ +L K +IL +R++ L+
Sbjct: 18 MRERRRLSKVNEAFETLKRSTSSN------PNQRLPKVEILRNAIRYIEGLQAL 65
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 34.1 bits (78), Expect = 6e-04
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 17 MLERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
+LER+RR + R L++ + EN K K IL+ ++ ++ +
Sbjct: 12 VLERQRRNELKRSFFALRDQIPEL-----ENNEKAPKVVILKKATAYILSVQAE 60
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 55
Score = 30.9 bits (70), Expect = 0.006
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 80 AYADRFKA-GFTHCAAEVSQYLAS 102
A A +++ GF C AEV++YL+
Sbjct: 7 ALAMDYRSLGFRECLAEVARYLSI 30
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 27.0 bits (60), Expect = 0.19
Identities = 10/48 (20%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 23 RARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQ 70
R+ IN + ELK++++ + +K+ K+ +L + ++ L++
Sbjct: 1 RSSINDKIIELKDLVMGT-------DAKMHKSGVLRKAIDYIKYLQQV 41
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a3 [TaxId: 9606]}
Length = 93
Score = 23.6 bits (51), Expect = 4.3
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 81 YADRFKAGFTHCAAEVSQYLASSMQQHQQQPSTEPTID 118
YA R + C AE+ + L + E +
Sbjct: 18 YAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYN 55
>d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 23.9 bits (51), Expect = 6.5
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 46 ENVSKLEKADILELTVRHLHKLRRQQSLGLTPEAAYADRFKAGFT 90
+ + ILE + L + + L P + + F+AGF
Sbjct: 193 GHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQAGFL 237
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 23.5 bits (49), Expect = 9.2
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 18 LERKRRARINRCLDELKEIMVTSLQAEGENVSKLEKADILELTVRHLHKLRRQQSLGLTP 77
+ R + L+ + + ++Q L+ +L L + L + + L+P
Sbjct: 4 AATRARQKQRASLETMDK----AVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGE--LSP 57
Query: 78 EA---AYADRFKA 87
EA Y +
Sbjct: 58 EAVFFTYLGKAWE 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.127 0.349
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 425,549
Number of extensions: 17211
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 21
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)