BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14655
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PH1|A Chain A, Crystal Structure Of Nucleotide-Binding Protein Af2382
From Archaeoglobus Fulgidus, Northeast Structural
Genomics Target Gr165
Length = 262
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 5/198 (2%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM 61
+ S KGGVGKST T LA + K++GILDAD GPSIPIL L + + +
Sbjct: 23 VXSGKGGVGKSTVTALLA--VHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGL 80
Query: 62 IPLVN--YGVKCLSMGNLI-TEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGT 118
P++ YG+K S L+ E + IWRG ++ + + +V WG D L ID PPGT
Sbjct: 81 EPVLTQKYGIKVXSXQFLLPKENTPVIWRGPLIAGXIREFLGRVAWGELDHLLIDLPPGT 140
Query: 119 GDTHLSLIQNLFXXXXXXXXXXXXMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCN 178
GD L++ Q+ ++ + ++ ++ N V GLV N + +CP+C
Sbjct: 141 GDAPLTVXQDAKPTGVVVVSTPQELTAVIVEKAINXAEETNTSVLGLVENXSYFVCPNCG 200
Query: 179 HMFELYENNLHQFEAKNF 196
H ++ + AK +
Sbjct: 201 HKSYIFGEGKGESLAKKY 218
>pdb|3KB1|A Chain A, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
pdb|3KB1|B Chain B, Crystal Structure Of The Nucleotide-Binding Protein Af_226
In Complex With Adp From Archaeoglobus Fulgidus,
Northeast Structural Genomics Consortium Target Gr157
Length = 262
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 5/186 (2%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM 61
+ S KGGVGKST T LA + K++GILDAD GPSIP L L + D +
Sbjct: 23 VXSGKGGVGKSTVTALLA--VHYAKQGKKVGILDADFLGPSIPHLFGLEKGKVAVSDEGL 80
Query: 62 IPLV--NYGVKCLSMGNLITEK-SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGT 118
P++ G+K S+ L+ ++ + IWRG ++ + + +V WG D L ID PPGT
Sbjct: 81 EPVLTQRLGIKVXSIQFLLPKRETPVIWRGPLIAGXIREFLGRVAWGELDYLLIDLPPGT 140
Query: 119 GDTHLSLIQNLFXXXXXXXXXXXXMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCN 178
GD L++ Q+ ++ V ++ T ++ V G+V N CP+C
Sbjct: 141 GDAPLTVXQDAKPNGAVIVSTPQELTAAVVEKAITXAEQTKTAVLGIVENXAYFECPNCG 200
Query: 179 HMFELY 184
L+
Sbjct: 201 ERTYLF 206
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 3/169 (1%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM 61
+ S KGGVGKS + LA + +G+LD D G S +++ +D +
Sbjct: 24 VVSGKGGVGKSLVSTTLALVL--AEKGYRVGLLDLDFHGASDHVILGFEPKEFPEEDRGV 81
Query: 62 IPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT 121
+P +G+K +++ TE RG + AL +L +W D L ID PPG GD
Sbjct: 82 VPPTVHGIKFMTIA-YYTEDRPTPLRGKEISDALIELLTITRWDELDYLVIDMPPGLGDQ 140
Query: 122 HLSLIQNLFXXXXXXXXXXXXMSLQVAQRGYTMFKKLNIPVAGLVMNMN 170
L +++ L +SL V ++ + K+ V G+V NM
Sbjct: 141 LLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKVIGVVENMK 189
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPL 54
+AS KGG GK+T T NL A+ D + I+DAD+ ++ +++ + P+
Sbjct: 7 VASGKGGTGKTTITANLGVALAQLGHD--VTIVDADITMANLELILGMEGLPV 57
>pdb|2XJ4|A Chain A, Structure Of The Bacterial Cell Division Regulator Protein
Mipz
Length = 286
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKD-N 59
++ + KGG GKST V+L TA+ Y ++ ++D D+ + L NK
Sbjct: 8 VVGNEKGGAGKSTIAVHLVTAL--LYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIE 65
Query: 60 LMIPL-VNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPG 117
L PL +N +++ E+ A + +A+ + CD + IDTP G
Sbjct: 66 LPEPLALNLSDNDVALAERPEEEQVAGFEAAFA-RAMAE---------CDFILIDTPGG 114
>pdb|2XIT|A Chain A, Crystal Structure Of Monomeric Mipz
pdb|2XIT|B Chain B, Crystal Structure Of Monomeric Mipz
Length = 294
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 14/119 (11%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKD-N 59
++ + KGG GKST V+L TA+ Y ++ ++D D+ + L NK
Sbjct: 8 VVGNEKGGAGKSTIAVHLVTAL--LYGGAKVAVIDLDLRQRTSARFFENRRAWLDNKKIE 65
Query: 60 LMIPL-VNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPG 117
L PL +N +++ E+ A + CD + IDTP G
Sbjct: 66 LPEPLALNLSDNDVALAERPEEEQVAGFEAAFAR----------AMAECDFILIDTPGG 114
>pdb|3K9G|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution, Iodide Soak
pdb|3K9H|A Chain A, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
pdb|3K9H|B Chain B, Crystal Structure Of A Plasmid Partition Protein From
Borrelia Burgdorferi At 2.25a Resolution
Length = 267
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
IAS KGGVGKST+ + LAT +
Sbjct: 32 IASIKGGVGKSTSAIILATLL 52
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation
Protein Soj
Length = 257
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 2 IASSKGGVGKSTTTVNLAT 20
+A+ KGGVGK+TT +NLA
Sbjct: 11 LANQKGGVGKTTTAINLAA 29
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation
Protein Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation
Protein Soj
Length = 257
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 2 IASSKGGVGKSTTTVNLAT 20
+A+ KGGVGK+TT +NLA
Sbjct: 11 LANQKGGVGKTTTAINLAA 29
>pdb|3EZ7|A Chain A, Partition Protein Apo Form In Space Group I4122
Length = 398
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 1 MIASSKGGVGKSTTTVNLATAMK----ICYPDKEIGILDAD 37
I++ KGGV ++T+TV+LA AM+ + D I ++D D
Sbjct: 112 FISNLKGGVSQTTSTVSLAHAMRAHPHLLMEDLRILVIDLD 152
>pdb|2XJ9|A Chain A, Dimer Structure Of The Bacterial Cell Division Regulator
Mipz
pdb|2XJ9|B Chain B, Dimer Structure Of The Bacterial Cell Division Regulator
Mipz
Length = 286
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35
++ + KGG GKST V+L TA+ Y ++ ++D
Sbjct: 8 VVGNEKGGAGKSTIAVHLVTAL--LYGGAKVAVID 40
>pdb|3FWY|A Chain A, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
pdb|3FWY|B Chain B, Crystal Structure Of The L Protein Of Rhodobacter
Sphaeroides Light- Independent Protochlorophyllide
Reductase (Bchl) With Mgadp Bound: A Homologue Of The
Nitrogenase Fe Protein
Length = 314
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 6 KGGVGKSTTTVNLATAMKI 24
KGG+GKSTT+ NL+ A I
Sbjct: 56 KGGIGKSTTSSNLSAAFSI 74
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
I S KGG GK+T T NL+ A+
Sbjct: 7 IVSGKGGTGKTTVTANLSVAL 27
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg-Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
I S KGG GK+T T NL+ A+
Sbjct: 7 IVSGKGGTGKTTVTANLSVAL 27
>pdb|3EZ2|A Chain A, Partition Protein-Adp Complex
pdb|3EZ2|B Chain B, Partition Protein-Adp Complex
pdb|3EZ6|A Chain A, Structure Of Para-Adp Complex:tetragonal Form
pdb|3EZ6|B Chain B, Structure Of Para-Adp Complex:tetragonal Form
Length = 398
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 1 MIASSKGGVGKSTTTVNLATAMK----ICYPDKEIGILDAD 37
I++ KGGV K+ +TV+LA AM+ + D I ++D D
Sbjct: 112 FISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLD 152
>pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex
Length = 620
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 183 LYENNLHQFEAKNFLKSYERKLYGIHM 209
+YEN +Q EA +FL+S +K YG+ +
Sbjct: 1 MYENRQYQVEAIDFLRSSLQKSYGVAL 27
>pdb|2C8V|A Chain A, Insights Into The Role Of Nucleotide-Dependent
Conformational Change In Nitrogenase Catalysis:
Structural Characterization Of The Nitrogenase Fe
Protein Leu127 Deletion Variant With Bound Mgatp
Length = 288
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 9 GKGGIGKSTTTQNLVAAL 26
>pdb|1XDB|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein
Asp129glu
pdb|1XDB|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein
Asp129glu
Length = 289
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 9 GKGGIGKSTTTQNLVAAL 26
>pdb|1NIP|A Chain A, Crystallographic Structure Of The Nitrogenase Iron
Protein From Azotobacter Vinelandii
pdb|1NIP|B Chain B, Crystallographic Structure Of The Nitrogenase Iron
Protein From Azotobacter Vinelandii
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp-Tetrafluoroaluminate
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1M1Y|E Chain E, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|F Chain F, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|G Chain G, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|H Chain H, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|M Chain M, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|N Chain N, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|O Chain O, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M1Y|P Chain P, Chemical Crosslink Of Nitrogenase Mofe Protein And Fe
Protein
pdb|1M34|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|M Chain M, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|N Chain N, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|O Chain O, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|1M34|P Chain P, Nitrogenase Complex From Azotobacter Vinelandii
Stabilized By Adp- Tetrafluoroaluminate
pdb|2AFH|E Chain E, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFH|F Chain F, Crystal Structure Of Nucleotide-Free Av2-Av1 Complex
pdb|2AFI|E Chain E, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|F Chain F, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|G Chain G, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|H Chain H, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|M Chain M, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|N Chain N, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|O Chain O, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFI|P Chain P, Crystal Structure Of Mgadp Bound Av2-Av1 Complex
pdb|2AFK|E Chain E, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|F Chain F, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|G Chain G, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
pdb|2AFK|H Chain H, Crystal Structure Of Mgamppcp-Bound Av2-Av1 Complex
Length = 289
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 9 GKGGIGKSTTTQNLVAAL 26
>pdb|1XD8|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD8|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
pdb|1XD9|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
pdb|1XD9|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein Asp39asn
With Mgadp Bound
Length = 289
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 9 GKGGIGKSTTTQNLVAAL 26
>pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe
Protein And The Mofe Protein
Length = 289
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 10 GKGGIGKSTTTQNLVAAL 27
>pdb|1RW4|A Chain A, Nitrogenase Fe Protein L127 Deletion Variant
Length = 272
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 10 GKGGIGKSTTTQNLVAAL 27
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s]
Cluster Of The Nitrogenase Fe Protein
pdb|1XCP|A Chain A, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|B Chain B, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|C Chain C, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
pdb|1XCP|D Chain D, Crystal Structure Of The Nitrogenase Fe Protein
Phe135trp With Mgadp Bound
Length = 289
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 9 GKGGIGKSTTTQNLVAAL 26
>pdb|3BFV|A Chain A, Crystal Structure Of The Chimerical Protein Capab
pdb|3BFV|B Chain B, Crystal Structure Of The Chimerical Protein Capab
Length = 271
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD 51
+I S G GKST NLA A + I+D D+ P+ + NLP+
Sbjct: 86 VITSEAPGAGKSTIAANLAVAY--AQAGYKTLIVDGDMRKPTQHYIFNLPN 134
>pdb|3CWQ|A Chain A, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
pdb|3CWQ|B Chain B, Crystal Structure Of Chromosome Partitioning Protein
(Para) In Complex With Adp From Synechocystis Sp.
Northeast Structural Genomics Consortium Target Sgr89
Length = 209
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 2 IASSKGGVGKSTTTVNLATAMKI 24
+AS KGGVGK+TT V+L+ + +
Sbjct: 5 VASFKGGVGKTTTAVHLSAYLAL 27
>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3Q9L|B Chain B, The Structure Of The Dimeric E.Coli Mind-Atp Complex
pdb|3R9I|A Chain A, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|B Chain B, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|C Chain C, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9I|D Chain D, 2.6a Resolution Structure Of Mind Complexed With Mine
(12-31) Peptide
pdb|3R9J|A Chain A, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
pdb|3R9J|B Chain B, 4.3a Resolution Structure Of A Mind-Mine(I24n) Protein
Complex
Length = 260
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 1 MIASSKGGVGKSTTTVNLATAM 22
++ S KGGVGK+T++ +AT +
Sbjct: 6 VVTSGKGGVGKTTSSAAIATGL 27
>pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridium Pasteurianum
pdb|1CP2|B Chain B, Nitrogenase Iron Protein From Clostridium Pasteurianum
Length = 269
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 5 SKGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL + +
Sbjct: 8 GKGGIGKSTTTQNLTSGL 25
>pdb|2YNM|A Chain A, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus
With Its Substrate Protochlorophyllide A
pdb|2YNM|B Chain B, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus
With Its Substrate Protochlorophyllide A
Length = 301
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 6 KGGVGKSTTTVNLATAM 22
KGG+GKSTT+ NL+ A
Sbjct: 42 KGGIGKSTTSSNLSAAF 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,947,873
Number of Sequences: 62578
Number of extensions: 243179
Number of successful extensions: 660
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 43
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)