Query psy14655
Match_columns 261
No_of_seqs 155 out of 1868
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 17:16:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3022|consensus 100.0 2.1E-35 4.5E-40 236.7 14.2 225 1-246 51-279 (300)
2 PRK11670 antiporter inner memb 100.0 1.6E-35 3.4E-40 256.5 12.3 226 1-248 111-339 (369)
3 PRK13869 plasmid-partitioning 100.0 4E-33 8.7E-38 244.7 14.0 213 1-244 125-373 (405)
4 TIGR01969 minD_arch cell divis 100.0 1.1E-31 2.3E-36 222.9 14.7 204 1-244 4-216 (251)
5 TIGR03453 partition_RepA plasm 100.0 8.7E-32 1.9E-36 236.1 13.8 213 1-244 108-356 (387)
6 PRK13705 plasmid-partitioning 100.0 1.3E-31 2.7E-36 233.8 13.9 213 1-243 110-353 (388)
7 PHA02519 plasmid partition pro 100.0 3.5E-31 7.5E-36 230.6 16.4 215 1-245 110-355 (387)
8 PF06564 YhjQ: YhjQ protein; 100.0 4.1E-32 8.9E-37 219.4 9.8 220 1-257 5-234 (243)
9 PRK10037 cell division protein 100.0 9E-32 2E-36 223.1 10.8 213 1-251 5-228 (250)
10 TIGR03371 cellulose_yhjQ cellu 100.0 1E-31 2.2E-36 222.4 10.8 218 1-251 5-234 (246)
11 CHL00175 minD septum-site dete 100.0 1E-30 2.2E-35 220.6 14.0 207 1-243 19-237 (281)
12 TIGR01968 minD_bact septum sit 100.0 8.6E-31 1.9E-35 218.6 13.4 206 1-242 5-221 (261)
13 PRK13232 nifH nitrogenase redu 100.0 6.8E-31 1.5E-35 220.6 11.1 214 1-248 5-234 (273)
14 COG1192 Soj ATPases involved i 100.0 1.1E-30 2.4E-35 217.8 11.6 217 1-248 6-240 (259)
15 COG2894 MinD Septum formation 100.0 2.3E-31 5E-36 206.5 6.6 205 1-240 6-228 (272)
16 CHL00072 chlL photochlorophyll 100.0 9.3E-30 2E-34 214.5 15.8 205 3-246 5-227 (290)
17 PRK13233 nifH nitrogenase redu 100.0 4.5E-31 9.7E-36 222.0 7.7 211 1-247 6-236 (275)
18 PHA02518 ParA-like protein; Pr 100.0 3.2E-30 6.9E-35 208.6 10.7 189 1-250 4-197 (211)
19 PRK13235 nifH nitrogenase redu 100.0 2.1E-30 4.5E-35 217.7 9.3 215 1-247 5-235 (274)
20 PRK13185 chlL protochlorophyll 100.0 2.6E-29 5.7E-34 210.8 15.2 202 2-244 7-227 (270)
21 cd02032 Bchl_like This family 100.0 3.9E-29 8.5E-34 209.3 15.8 204 2-247 5-228 (267)
22 cd02037 MRP-like MRP (Multiple 100.0 1.3E-28 2.9E-33 192.4 16.9 144 1-185 3-146 (169)
23 cd02036 MinD Bacterial cell di 100.0 3.5E-29 7.6E-34 197.3 13.4 174 1-248 3-176 (179)
24 TIGR01287 nifH nitrogenase iro 100.0 1.5E-29 3.2E-34 212.8 10.6 210 4-248 6-234 (275)
25 TIGR01281 DPOR_bchL light-inde 100.0 4.9E-29 1.1E-33 208.9 13.6 201 4-244 6-225 (268)
26 PRK10818 cell division inhibit 100.0 7.6E-29 1.7E-33 208.0 13.7 204 1-239 6-228 (270)
27 cd02040 NifH NifH gene encodes 100.0 1.1E-29 2.5E-34 213.0 8.7 213 2-248 6-235 (270)
28 cd02117 NifH_like This family 100.0 4.3E-28 9.4E-33 196.2 15.1 163 2-171 5-186 (212)
29 PRK13236 nitrogenase reductase 100.0 3.1E-29 6.8E-34 212.2 8.7 213 4-250 12-242 (296)
30 PRK13230 nitrogenase reductase 100.0 3.7E-29 8E-34 210.7 9.0 208 2-245 6-232 (279)
31 COG0489 Mrp ATPases involved i 100.0 1.6E-27 3.4E-32 197.9 17.1 170 1-178 61-237 (265)
32 PRK13234 nifH nitrogenase redu 100.0 1.2E-28 2.6E-33 208.6 8.7 208 2-246 9-236 (295)
33 TIGR03018 pepcterm_TyrKin exop 100.0 2.9E-27 6.3E-32 190.6 15.1 156 1-168 39-207 (207)
34 COG0455 flhG Antiactivator of 100.0 1.1E-27 2.4E-32 197.3 12.8 211 1-248 6-228 (262)
35 TIGR03815 CpaE_hom_Actino heli 99.9 4.9E-27 1.1E-31 201.6 16.2 194 1-239 97-304 (322)
36 PRK13849 putative crown gall t 99.9 1.7E-27 3.8E-32 194.1 12.2 183 1-239 5-193 (231)
37 TIGR01007 eps_fam capsular exo 99.9 9.1E-27 2E-31 187.5 16.1 162 1-172 21-192 (204)
38 PRK13231 nitrogenase reductase 99.9 3.8E-28 8.3E-33 203.0 7.4 206 2-245 7-225 (264)
39 TIGR03029 EpsG chain length de 99.9 1.6E-26 3.5E-31 194.3 15.5 159 1-169 107-274 (274)
40 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 7.2E-27 1.5E-31 186.6 10.5 155 1-171 2-159 (195)
41 cd03110 Fer4_NifH_child This p 99.9 1.9E-25 4.1E-30 176.2 16.8 151 1-171 3-154 (179)
42 COG3640 CooC CO dehydrogenase 99.9 2.2E-25 4.7E-30 175.7 14.6 204 2-242 4-237 (255)
43 TIGR01005 eps_transp_fam exopo 99.9 4.5E-24 9.7E-29 202.2 13.9 163 1-172 550-720 (754)
44 PRK11519 tyrosine kinase; Prov 99.9 1.7E-23 3.7E-28 196.4 15.7 162 1-171 530-699 (719)
45 PRK09841 cryptic autophosphory 99.9 1.8E-23 3.9E-28 196.4 15.5 162 1-171 535-704 (726)
46 cd03111 CpaE_like This protein 99.9 3E-23 6.5E-28 149.2 13.0 100 1-169 3-106 (106)
47 TIGR02016 BchX chlorophyllide 99.9 2.3E-23 4.9E-28 176.1 14.4 160 2-171 5-193 (296)
48 COG1149 MinD superfamily P-loo 99.9 1.1E-23 2.4E-28 169.5 9.6 203 1-240 5-264 (284)
49 PF07015 VirC1: VirC1 protein; 99.9 3E-22 6.6E-27 159.7 12.6 141 1-171 5-151 (231)
50 cd00550 ArsA_ATPase Oxyanion-t 99.9 7.6E-23 1.7E-27 169.6 9.6 168 1-172 3-201 (254)
51 cd02033 BchX Chlorophyllide re 99.9 4.2E-22 9.2E-27 169.2 14.1 194 4-238 37-254 (329)
52 cd02035 ArsA ArsA ATPase funct 99.9 3.5E-22 7.6E-27 162.1 9.7 160 1-172 2-182 (217)
53 cd02038 FleN-like FleN is a me 99.9 5E-21 1.1E-25 144.6 15.2 105 1-171 3-108 (139)
54 cd02042 ParA ParA and ParB of 99.9 2.8E-21 6E-26 138.8 12.5 97 1-168 3-104 (104)
55 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 1.7E-22 3.8E-27 163.1 4.3 212 4-250 6-237 (273)
56 COG1348 NifH Nitrogenase subun 99.9 1.6E-21 3.5E-26 153.0 8.7 211 4-251 7-239 (278)
57 PF09140 MipZ: ATPase MipZ; I 99.8 4.5E-21 9.8E-26 153.5 7.3 132 1-145 4-135 (261)
58 COG4963 CpaE Flp pilus assembl 99.8 3E-18 6.4E-23 144.8 13.3 211 1-249 108-332 (366)
59 PF13614 AAA_31: AAA domain; P 99.8 4.1E-19 8.9E-24 136.9 5.7 135 1-146 4-156 (157)
60 PF02374 ArsA_ATPase: Anion-tr 99.7 1.6E-17 3.6E-22 140.8 12.4 164 1-172 4-248 (305)
61 cd03114 ArgK-like The function 99.7 1.1E-15 2.4E-20 116.3 14.4 144 2-170 3-147 (148)
62 COG0003 ArsA Predicted ATPase 99.6 3.1E-15 6.7E-20 126.6 12.7 169 1-172 5-248 (322)
63 cd02034 CooC The accessory pro 99.6 1.1E-15 2.3E-20 111.3 6.8 113 2-137 3-115 (116)
64 KOG2825|consensus 99.6 9.3E-15 2E-19 116.4 9.6 166 2-171 23-264 (323)
65 TIGR00347 bioD dethiobiotin sy 99.5 3.5E-13 7.6E-18 104.8 14.4 151 2-168 2-166 (166)
66 cd01983 Fer4_NifH The Fer4_Nif 99.5 1.7E-13 3.8E-18 96.4 11.1 91 2-168 3-99 (99)
67 PF10609 ParA: ParA/MinD ATPas 99.5 3.3E-13 7.1E-18 90.0 7.7 79 108-186 2-80 (81)
68 TIGR00064 ftsY signal recognit 99.4 1.8E-12 3.9E-17 108.3 12.7 138 5-172 79-229 (272)
69 PRK13886 conjugal transfer pro 99.4 1.9E-12 4.1E-17 105.2 12.4 44 1-46 6-49 (241)
70 cd03115 SRP The signal recogni 99.4 8.1E-12 1.7E-16 97.8 13.2 142 2-172 4-151 (173)
71 PRK10867 signal recognition pa 99.4 6.2E-12 1.3E-16 110.9 12.0 142 2-172 104-252 (433)
72 PRK13768 GTPase; Provisional 99.4 6.6E-12 1.4E-16 104.1 11.3 40 2-43 6-45 (253)
73 TIGR00959 ffh signal recogniti 99.3 1.5E-11 3.2E-16 108.5 11.4 142 2-172 103-251 (428)
74 PRK00090 bioD dithiobiotin syn 99.3 1.9E-11 4.1E-16 99.6 10.5 159 2-171 4-173 (222)
75 TIGR01425 SRP54_euk signal rec 99.3 4E-11 8.7E-16 105.2 12.4 141 3-172 105-251 (429)
76 PRK10416 signal recognition pa 99.2 1.5E-10 3.4E-15 98.7 13.1 138 5-171 121-270 (318)
77 PRK00771 signal recognition pa 99.2 1E-10 2.2E-15 103.4 10.7 139 3-172 100-244 (437)
78 TIGR00345 arsA arsenite-activa 99.2 2.5E-10 5.5E-15 96.3 11.9 151 14-172 1-230 (284)
79 PRK11889 flhF flagellar biosyn 99.1 2.8E-10 6E-15 98.2 9.7 135 4-172 247-389 (436)
80 TIGR00750 lao LAO/AO transport 99.1 2.3E-09 5.1E-14 91.2 15.3 145 3-172 39-184 (300)
81 PRK12726 flagellar biosynthesi 99.1 6.6E-10 1.4E-14 95.5 10.6 137 2-172 211-354 (407)
82 cd03109 DTBS Dethiobiotin synt 99.0 2E-08 4.4E-13 75.1 14.2 99 2-171 4-108 (134)
83 COG0541 Ffh Signal recognition 99.0 2.3E-09 5E-14 92.6 10.0 138 6-172 108-251 (451)
84 PRK12727 flagellar biosynthesi 99.0 3.5E-09 7.6E-14 94.7 10.5 134 4-172 356-496 (559)
85 PRK09435 membrane ATPase/prote 99.0 2.2E-08 4.7E-13 85.7 13.8 143 3-172 61-206 (332)
86 COG1703 ArgK Putative periplas 98.9 7.5E-08 1.6E-12 79.6 16.2 142 4-171 57-200 (323)
87 PRK05703 flhF flagellar biosyn 98.9 3.7E-09 8.1E-14 93.7 9.0 130 4-172 227-369 (424)
88 PRK14974 cell division protein 98.9 1.3E-08 2.8E-13 87.3 10.8 141 3-172 145-291 (336)
89 PRK14493 putative bifunctional 98.9 6.4E-09 1.4E-13 86.9 8.3 124 2-150 6-132 (274)
90 PRK12724 flagellar biosynthesi 98.9 1E-08 2.2E-13 89.6 9.5 135 2-172 227-371 (432)
91 PF00448 SRP54: SRP54-type pro 98.9 2.6E-08 5.6E-13 79.4 10.3 139 5-172 8-152 (196)
92 PRK01077 cobyrinic acid a,c-di 98.8 6.5E-08 1.4E-12 86.9 13.8 138 1-171 7-155 (451)
93 PRK12723 flagellar biosynthesi 98.8 3.3E-08 7.2E-13 86.3 10.7 135 3-172 179-324 (388)
94 TIGR00313 cobQ cobyric acid sy 98.7 7.8E-07 1.7E-11 80.3 16.8 166 2-171 3-196 (475)
95 PF03308 ArgK: ArgK protein; 98.7 1.3E-07 2.7E-12 77.2 9.0 142 4-171 35-178 (266)
96 PRK06731 flhF flagellar biosyn 98.7 2.1E-07 4.5E-12 77.5 10.1 136 3-172 80-223 (270)
97 PRK12374 putative dithiobiotin 98.6 1.1E-06 2.3E-11 72.1 13.9 156 2-171 7-175 (231)
98 PF13500 AAA_26: AAA domain; P 98.6 3.6E-07 7.9E-12 73.1 10.7 151 2-171 5-169 (199)
99 TIGR03499 FlhF flagellar biosy 98.6 2.8E-08 6E-13 83.8 3.8 37 4-41 200-237 (282)
100 PRK05632 phosphate acetyltrans 98.6 3.9E-07 8.4E-12 85.9 11.8 133 2-170 7-150 (684)
101 COG0132 BioD Dethiobiotin synt 98.5 8.2E-06 1.8E-10 65.7 15.6 155 2-171 7-176 (223)
102 PRK14723 flhF flagellar biosyn 98.5 6.8E-07 1.5E-11 83.7 8.9 136 5-172 192-335 (767)
103 TIGR00379 cobB cobyrinic acid 98.4 6.7E-06 1.4E-10 73.9 14.3 138 1-171 3-151 (449)
104 PRK00784 cobyric acid synthase 98.4 5.5E-06 1.2E-10 75.2 13.7 162 2-171 7-199 (488)
105 COG1341 Predicted GTPase or GT 98.4 3.9E-06 8.5E-11 72.4 12.0 123 8-144 83-214 (398)
106 PF03029 ATP_bind_1: Conserved 98.4 1.7E-07 3.8E-12 76.9 3.0 36 6-43 4-39 (238)
107 COG0552 FtsY Signal recognitio 98.3 3.9E-06 8.4E-11 70.8 8.3 133 7-171 148-295 (340)
108 PRK14722 flhF flagellar biosyn 98.2 9.2E-06 2E-10 70.7 10.2 38 3-41 142-180 (374)
109 cd04170 EF-G_bact Elongation f 98.2 6.5E-06 1.4E-10 69.0 8.6 66 104-172 61-128 (268)
110 KOG0781|consensus 98.2 6.8E-06 1.5E-10 72.0 7.5 147 5-171 385-541 (587)
111 KOG0780|consensus 98.2 6.5E-06 1.4E-10 70.4 7.2 110 7-142 110-225 (483)
112 KOG1532|consensus 98.1 2.6E-05 5.6E-10 64.0 10.1 155 5-172 26-193 (366)
113 PRK06995 flhF flagellar biosyn 98.1 8.4E-06 1.8E-10 73.1 8.1 34 6-40 264-298 (484)
114 COG1797 CobB Cobyrinic acid a, 98.1 6E-05 1.3E-09 65.8 12.5 137 1-172 4-153 (451)
115 KOG1533|consensus 98.1 6E-06 1.3E-10 66.0 4.8 41 3-45 7-47 (290)
116 cd04168 TetM_like Tet(M)-like 97.9 0.00017 3.8E-09 59.2 10.3 65 105-172 62-128 (237)
117 PRK12740 elongation factor G; 97.9 0.00011 2.3E-09 69.7 10.2 65 105-172 58-124 (668)
118 cd01886 EF-G Elongation factor 97.8 0.00027 5.9E-09 59.3 11.3 65 105-172 62-128 (270)
119 PRK13896 cobyrinic acid a,c-di 97.8 0.00091 2E-08 59.6 14.2 136 2-171 6-150 (433)
120 cd04169 RF3 RF3 subfamily. Pe 97.7 0.0003 6.5E-09 58.9 10.1 64 105-171 69-134 (267)
121 cd01884 EF_Tu EF-Tu subfamily. 97.7 0.00041 9E-09 55.3 9.9 66 105-172 63-130 (195)
122 cd01894 EngA1 EngA1 subfamily. 97.7 0.00048 1E-08 52.2 9.7 65 105-172 43-117 (157)
123 cd01120 RecA-like_NTPases RecA 97.6 0.00027 5.9E-09 53.9 7.3 39 2-42 3-41 (165)
124 COG1419 FlhF Flagellar GTP-bin 97.6 0.00032 7E-09 61.0 8.2 133 6-171 211-349 (407)
125 PRK06278 cobyrinic acid a,c-di 97.6 0.0013 2.7E-08 59.4 11.9 66 105-171 316-394 (476)
126 KOG2749|consensus 97.6 0.00035 7.5E-09 59.4 7.8 34 8-43 113-146 (415)
127 PRK09361 radB DNA repair and r 97.6 0.00013 2.8E-09 59.5 5.1 34 2-37 27-60 (225)
128 cd01124 KaiC KaiC is a circadi 97.5 0.00017 3.8E-09 56.7 5.4 38 2-41 3-40 (187)
129 PRK00741 prfC peptide chain re 97.5 0.00083 1.8E-08 61.6 10.2 64 105-171 77-142 (526)
130 cd04167 Snu114p Snu114p subfam 97.5 0.00087 1.9E-08 54.1 9.3 65 105-172 69-135 (213)
131 PRK13505 formate--tetrahydrofo 97.5 0.00017 3.8E-09 64.9 5.3 47 2-53 60-109 (557)
132 cd00881 GTP_translation_factor 97.5 0.00066 1.4E-08 53.1 8.0 65 105-172 60-126 (189)
133 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0011 2.4E-08 50.8 8.8 29 6-36 10-38 (159)
134 PRK08233 hypothetical protein; 97.4 0.00069 1.5E-08 53.0 7.6 34 3-40 8-41 (182)
135 TIGR00503 prfC peptide chain r 97.4 0.0014 3E-08 60.1 9.9 64 105-171 78-143 (527)
136 cd04163 Era Era subfamily. Er 97.3 0.0021 4.5E-08 48.9 9.2 65 105-172 49-123 (168)
137 PRK00089 era GTPase Era; Revie 97.3 0.0023 5E-08 54.3 10.2 65 105-172 51-125 (292)
138 cd02027 APSK Adenosine 5'-phos 97.3 0.0023 5.1E-08 48.6 9.0 37 2-40 3-39 (149)
139 cd00477 FTHFS Formyltetrahydro 97.3 0.00036 7.9E-09 62.2 4.8 47 2-53 43-92 (524)
140 KOG1534|consensus 97.3 0.00035 7.7E-09 55.2 4.0 39 3-43 8-46 (273)
141 TIGR00708 cobA cob(I)alamin ad 97.2 0.002 4.4E-08 50.0 8.0 31 5-37 12-42 (173)
142 PF03205 MobB: Molybdopterin g 97.2 0.0005 1.1E-08 51.7 4.6 38 2-42 5-43 (140)
143 PRK00889 adenylylsulfate kinas 97.2 0.0033 7.1E-08 49.0 9.2 37 2-40 8-44 (175)
144 COG0050 TufB GTPases - transla 97.2 0.0023 5E-08 53.3 8.3 68 105-172 73-140 (394)
145 PRK07952 DNA replication prote 97.2 0.00039 8.5E-09 57.2 4.0 33 2-36 103-135 (244)
146 cd01394 radB RadB. The archaea 97.2 0.00048 1E-08 55.8 4.4 37 2-40 23-59 (218)
147 PLN03127 Elongation factor Tu; 97.2 0.004 8.7E-08 56.0 10.4 68 105-172 122-189 (447)
148 PRK13506 formate--tetrahydrofo 97.1 0.00058 1.3E-08 61.5 4.7 47 2-53 59-108 (578)
149 cd04165 GTPBP1_like GTPBP1-lik 97.1 0.0087 1.9E-07 48.8 11.3 67 105-172 82-150 (224)
150 PRK14721 flhF flagellar biosyn 97.1 0.0046 1E-07 54.9 10.1 133 5-172 198-338 (420)
151 TIGR00490 aEF-2 translation el 97.1 0.0023 5E-08 61.1 8.5 66 105-173 84-151 (720)
152 PRK07667 uridine kinase; Provi 97.0 0.00082 1.8E-08 53.5 4.3 35 3-39 22-56 (193)
153 cd03112 CobW_like The function 97.0 0.02 4.4E-07 43.9 11.9 142 2-171 4-157 (158)
154 PF01583 APS_kinase: Adenylyls 97.0 0.00065 1.4E-08 51.9 3.4 39 3-43 7-45 (156)
155 PRK05986 cob(I)alamin adenolsy 97.0 0.0049 1.1E-07 48.6 8.3 32 4-37 28-59 (191)
156 PRK05973 replicative DNA helic 97.0 0.00081 1.7E-08 55.1 4.1 37 2-40 68-104 (237)
157 PRK00049 elongation factor Tu; 97.0 0.0035 7.6E-08 55.6 8.3 66 105-172 73-140 (396)
158 TIGR00436 era GTP-binding prot 97.0 0.008 1.7E-07 50.4 9.9 64 105-172 46-119 (270)
159 cd00880 Era_like Era (E. coli 97.0 0.0067 1.5E-07 45.4 8.6 64 106-172 44-116 (163)
160 PLN02974 adenosylmethionine-8- 96.9 0.0046 9.9E-08 59.5 9.0 64 105-169 183-252 (817)
161 PRK06067 flagellar accessory p 96.9 0.0017 3.8E-08 53.2 5.5 35 3-39 30-64 (234)
162 COG0529 CysC Adenylylsulfate k 96.9 0.0011 2.4E-08 51.2 3.9 46 4-51 29-74 (197)
163 cd00983 recA RecA is a bacter 96.9 0.0017 3.6E-08 55.7 5.4 35 3-39 60-94 (325)
164 smart00382 AAA ATPases associa 96.9 0.0022 4.8E-08 47.1 5.5 38 2-41 6-43 (148)
165 PRK08533 flagellar accessory p 96.9 0.0024 5.2E-08 52.3 6.1 36 3-40 29-64 (230)
166 PRK00007 elongation factor G; 96.9 0.0062 1.3E-07 58.0 9.6 65 105-172 73-139 (693)
167 TIGR00176 mobB molybdopterin-g 96.9 0.0019 4.1E-08 49.5 4.8 33 5-39 6-38 (155)
168 COG1159 Era GTPase [General fu 96.8 0.011 2.4E-07 49.4 9.4 104 5-172 13-126 (298)
169 PRK00093 GTP-binding protein D 96.8 0.011 2.4E-07 53.1 10.3 65 105-172 47-121 (435)
170 TIGR02012 tigrfam_recA protein 96.8 0.0022 4.7E-08 54.9 5.3 35 3-39 60-94 (321)
171 PRK12739 elongation factor G; 96.8 0.011 2.4E-07 56.3 10.0 65 105-172 71-137 (691)
172 PRK15494 era GTPase Era; Provi 96.7 0.0078 1.7E-07 52.2 8.2 65 105-172 98-172 (339)
173 PRK04296 thymidine kinase; Pro 96.7 0.0081 1.8E-07 47.6 7.6 30 3-34 7-36 (190)
174 PRK00652 lpxK tetraacyldisacch 96.7 0.008 1.7E-07 51.7 7.8 33 6-40 59-91 (325)
175 PF13481 AAA_25: AAA domain; P 96.7 0.0018 3.9E-08 51.2 3.6 37 2-40 36-82 (193)
176 TIGR02237 recomb_radB DNA repa 96.7 0.0025 5.4E-08 51.2 4.5 34 3-38 17-50 (209)
177 PHA02542 41 41 helicase; Provi 96.6 0.002 4.3E-08 58.3 4.0 38 2-41 194-231 (473)
178 PF13479 AAA_24: AAA domain 96.6 0.0057 1.2E-07 49.4 6.3 31 2-42 7-37 (213)
179 PRK06696 uridine kinase; Valid 96.6 0.0022 4.8E-08 52.2 4.0 37 2-40 26-62 (223)
180 TIGR01618 phage_P_loop phage n 96.6 0.0038 8.2E-08 50.6 5.0 30 2-40 16-45 (220)
181 cd02028 UMPK_like Uridine mono 96.6 0.0022 4.8E-08 50.3 3.6 37 2-40 3-39 (179)
182 PLN03126 Elongation factor Tu; 96.6 0.011 2.4E-07 53.6 8.5 66 105-172 142-209 (478)
183 KOG0744|consensus 96.6 0.0029 6.3E-08 53.4 4.2 150 3-158 182-346 (423)
184 TIGR00485 EF-Tu translation el 96.6 0.013 2.9E-07 51.9 8.7 66 105-172 73-140 (394)
185 cd01891 TypA_BipA TypA (tyrosi 96.6 0.017 3.6E-07 45.8 8.5 65 105-172 63-129 (194)
186 PRK14494 putative molybdopteri 96.6 0.0027 5.8E-08 51.7 3.9 33 2-37 6-38 (229)
187 PRK12736 elongation factor Tu; 96.6 0.011 2.4E-07 52.4 8.1 66 105-172 73-140 (394)
188 PRK03846 adenylylsulfate kinas 96.5 0.0024 5.2E-08 51.0 3.5 37 2-40 28-64 (198)
189 PRK11823 DNA repair protein Ra 96.5 0.0051 1.1E-07 55.4 5.9 36 2-39 84-119 (446)
190 CHL00071 tufA elongation facto 96.5 0.017 3.7E-07 51.5 9.2 66 105-172 73-140 (409)
191 TIGR03574 selen_PSTK L-seryl-t 96.5 0.0026 5.6E-08 52.7 3.6 36 2-39 3-38 (249)
192 cd04171 SelB SelB subfamily. 96.5 0.014 2.9E-07 44.4 7.4 65 106-172 50-116 (164)
193 PF06745 KaiC: KaiC; InterPro 96.5 0.0026 5.7E-08 51.8 3.4 38 2-41 23-61 (226)
194 cd01122 GP4d_helicase GP4d_hel 96.5 0.0033 7.2E-08 52.6 4.0 37 2-40 34-71 (271)
195 PRK08939 primosomal protein Dn 96.4 0.0028 6E-08 54.1 3.4 34 2-37 160-193 (306)
196 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.0057 1.2E-07 50.3 5.0 37 2-40 25-61 (237)
197 COG1492 CobQ Cobyric acid synt 96.4 0.018 3.8E-07 51.5 8.2 196 2-221 6-231 (486)
198 PRK12735 elongation factor Tu; 96.4 0.021 4.4E-07 50.7 8.7 66 105-172 73-140 (396)
199 cd01895 EngA2 EngA2 subfamily. 96.4 0.049 1.1E-06 41.5 9.9 65 105-172 48-125 (174)
200 PHA00729 NTP-binding motif con 96.4 0.0035 7.7E-08 50.8 3.4 22 2-23 21-42 (226)
201 PRK13351 elongation factor G; 96.3 0.02 4.3E-07 54.6 8.9 65 105-172 71-137 (687)
202 TIGR01394 TypA_BipA GTP-bindin 96.3 0.019 4.1E-07 53.5 8.6 65 105-172 62-128 (594)
203 PF02606 LpxK: Tetraacyldisacc 96.3 0.026 5.7E-07 48.6 8.7 34 6-41 45-78 (326)
204 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.005 1.1E-07 51.3 4.1 35 2-38 40-74 (259)
205 TIGR00484 EF-G translation elo 96.3 0.028 6.1E-07 53.6 9.6 65 105-172 73-139 (689)
206 PF01926 MMR_HSR1: 50S ribosom 96.3 0.023 4.9E-07 40.9 7.1 61 105-169 45-116 (116)
207 COG1484 DnaC DNA replication p 96.3 0.0049 1.1E-07 51.2 4.0 34 2-37 109-142 (254)
208 PLN00043 elongation factor 1-a 96.3 0.012 2.6E-07 53.0 6.7 66 105-172 83-157 (447)
209 TIGR03575 selen_PSTK_euk L-ser 96.3 0.005 1.1E-07 53.2 4.1 38 2-41 3-41 (340)
210 TIGR02655 circ_KaiC circadian 96.3 0.0079 1.7E-07 54.8 5.6 38 2-41 267-304 (484)
211 PF13207 AAA_17: AAA domain; P 96.3 0.0041 9E-08 45.1 3.1 30 2-36 3-32 (121)
212 PF13245 AAA_19: Part of AAA d 96.3 0.007 1.5E-07 40.3 3.9 34 2-37 14-51 (76)
213 cd00984 DnaB_C DnaB helicase C 96.2 0.0055 1.2E-07 50.3 4.0 37 2-40 17-54 (242)
214 cd01898 Obg Obg subfamily. Th 96.2 0.061 1.3E-06 41.2 9.7 63 107-172 48-126 (170)
215 cd03116 MobB Molybdenum is an 96.2 0.0078 1.7E-07 46.3 4.4 34 5-40 8-41 (159)
216 TIGR00682 lpxK tetraacyldisacc 96.2 0.025 5.4E-07 48.4 7.8 33 7-41 39-71 (311)
217 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.005 1.1E-07 50.3 3.6 38 3-40 24-65 (235)
218 PRK06526 transposase; Provisio 96.2 0.0027 5.8E-08 52.8 1.9 33 2-36 102-134 (254)
219 PRK10218 GTP-binding protein; 96.2 0.032 6.9E-07 52.1 9.0 65 105-172 66-132 (607)
220 PF02492 cobW: CobW/HypB/UreG, 96.1 0.027 5.8E-07 44.1 7.3 138 2-171 4-152 (178)
221 PF01695 IstB_IS21: IstB-like 96.1 0.0051 1.1E-07 48.2 3.2 34 2-37 51-84 (178)
222 TIGR03594 GTPase_EngA ribosome 96.1 0.033 7.2E-07 49.9 8.7 66 105-173 45-120 (429)
223 COG3598 RepA RecA-family ATPas 96.1 0.0064 1.4E-07 51.4 3.8 41 2-42 93-141 (402)
224 COG1066 Sms Predicted ATP-depe 96.1 0.0084 1.8E-07 52.3 4.6 36 2-40 97-132 (456)
225 PF00009 GTP_EFTU: Elongation 96.1 0.016 3.5E-07 45.7 6.0 65 105-172 68-134 (188)
226 PRK04328 hypothetical protein; 96.1 0.012 2.6E-07 48.8 5.4 36 3-40 28-63 (249)
227 TIGR02238 recomb_DMC1 meiotic 96.1 0.0078 1.7E-07 51.5 4.4 38 3-40 101-142 (313)
228 PRK07414 cob(I)yrinic acid a,c 96.1 0.029 6.2E-07 43.7 7.1 30 6-37 29-58 (178)
229 cd01125 repA Hexameric Replica 96.1 0.008 1.7E-07 49.4 4.2 37 2-40 5-53 (239)
230 cd01879 FeoB Ferrous iron tran 96.1 0.027 5.8E-07 42.5 6.8 64 106-172 42-113 (158)
231 cd02029 PRK_like Phosphoribulo 96.0 0.0093 2E-07 49.5 4.2 37 3-41 4-40 (277)
232 COG0523 Putative GTPases (G3E 96.0 0.16 3.5E-06 43.7 11.8 140 4-172 7-157 (323)
233 cd01864 Rab19 Rab19 subfamily. 96.0 0.055 1.2E-06 41.3 8.4 64 106-172 51-120 (165)
234 cd01393 recA_like RecA is a b 96.0 0.018 3.8E-07 46.8 5.8 37 3-39 24-64 (226)
235 PF03796 DnaB_C: DnaB-like hel 96.0 0.0093 2E-07 49.7 4.2 38 2-41 23-61 (259)
236 PF02572 CobA_CobO_BtuR: ATP:c 95.9 0.034 7.4E-07 43.2 6.9 92 7-114 12-104 (172)
237 PRK03003 GTP-binding protein D 95.9 0.029 6.4E-07 51.0 7.3 65 105-172 84-158 (472)
238 PLN03187 meiotic recombination 95.8 0.036 7.8E-07 48.1 7.1 38 3-40 131-172 (344)
239 PRK14495 putative molybdopteri 95.8 0.014 3.1E-07 51.7 4.5 33 2-37 6-38 (452)
240 PTZ00416 elongation factor 2; 95.8 0.04 8.8E-07 53.6 8.1 65 105-172 90-156 (836)
241 TIGR03420 DnaA_homol_Hda DnaA 95.7 0.01 2.2E-07 48.1 3.5 37 2-40 42-78 (226)
242 TIGR03600 phage_DnaB phage rep 95.7 0.012 2.5E-07 52.8 4.1 37 2-40 198-235 (421)
243 cd04148 RGK RGK subfamily. Th 95.7 0.059 1.3E-06 43.7 7.9 65 105-172 48-118 (221)
244 KOG0635|consensus 95.7 0.019 4.1E-07 43.2 4.4 44 5-50 38-81 (207)
245 cd00544 CobU Adenosylcobinamid 95.7 0.089 1.9E-06 40.8 8.4 31 2-37 3-33 (169)
246 cd04137 RheB Rheb (Ras Homolog 95.7 0.051 1.1E-06 42.2 7.2 65 105-172 47-118 (180)
247 cd04120 Rab12 Rab12 subfamily. 95.7 0.11 2.3E-06 41.6 9.1 66 105-172 47-117 (202)
248 PRK05480 uridine/cytidine kina 95.7 0.012 2.7E-07 47.2 3.7 34 2-39 10-43 (209)
249 cd04142 RRP22 RRP22 subfamily. 95.7 0.12 2.7E-06 41.1 9.4 64 106-172 48-128 (198)
250 COG1763 MobB Molybdopterin-gua 95.6 0.038 8.2E-07 42.4 5.9 33 6-40 10-42 (161)
251 PF08433 KTI12: Chromatin asso 95.6 0.016 3.5E-07 48.5 4.3 35 2-38 5-39 (270)
252 PRK04301 radA DNA repair and r 95.6 0.025 5.5E-07 48.6 5.6 38 3-40 107-148 (317)
253 cd04101 RabL4 RabL4 (Rab-like4 95.6 0.047 1E-06 41.6 6.6 66 105-172 50-119 (164)
254 TIGR02236 recomb_radA DNA repa 95.6 0.015 3.3E-07 49.7 4.2 38 3-40 100-141 (310)
255 PRK05433 GTP-binding protein L 95.6 0.064 1.4E-06 50.2 8.4 65 105-172 72-138 (600)
256 PRK05642 DNA replication initi 95.6 0.013 2.7E-07 48.1 3.4 35 2-38 49-83 (234)
257 PRK09302 circadian clock prote 95.6 0.02 4.4E-07 52.5 5.0 38 2-41 35-73 (509)
258 PRK12377 putative replication 95.6 0.016 3.4E-07 48.0 3.9 34 2-37 105-138 (248)
259 cd04110 Rab35 Rab35 subfamily. 95.5 0.15 3.2E-06 40.6 9.4 65 106-172 54-122 (199)
260 PF00485 PRK: Phosphoribulokin 95.5 0.012 2.6E-07 46.7 3.2 34 3-38 4-41 (194)
261 PRK09519 recA DNA recombinatio 95.5 0.026 5.6E-07 53.9 5.6 36 3-40 65-100 (790)
262 PRK08727 hypothetical protein; 95.5 0.014 3.1E-07 47.8 3.5 35 2-38 45-79 (233)
263 TIGR00073 hypB hydrogenase acc 95.5 0.33 7.2E-06 38.9 11.3 34 3-39 27-60 (207)
264 PRK15453 phosphoribulokinase; 95.4 0.019 4E-07 48.2 4.0 36 3-40 10-45 (290)
265 cd01887 IF2_eIF5B IF2/eIF5B (i 95.4 0.075 1.6E-06 40.5 7.3 65 105-172 48-114 (168)
266 TIGR03881 KaiC_arch_4 KaiC dom 95.4 0.022 4.7E-07 46.4 4.4 37 2-40 24-60 (229)
267 TIGR00455 apsK adenylylsulfate 95.4 0.017 3.7E-07 45.4 3.7 37 2-40 22-58 (184)
268 PRK14088 dnaA chromosomal repl 95.4 0.015 3.2E-07 52.4 3.6 37 2-38 134-170 (440)
269 KOG0460|consensus 95.4 0.049 1.1E-06 46.5 6.4 65 108-172 118-182 (449)
270 PRK06835 DNA replication prote 95.4 0.017 3.6E-07 49.9 3.7 35 2-38 187-221 (329)
271 cd02025 PanK Pantothenate kina 95.4 0.022 4.8E-07 46.2 4.3 35 3-39 4-40 (220)
272 COG2874 FlaH Predicted ATPases 95.4 0.035 7.5E-07 44.4 5.1 97 6-115 36-132 (235)
273 PRK09183 transposase/IS protei 95.4 0.019 4.1E-07 47.9 3.9 33 2-36 106-138 (259)
274 PRK06762 hypothetical protein; 95.4 0.014 3.1E-07 44.9 2.9 34 2-40 6-39 (166)
275 PRK08903 DnaA regulatory inact 95.4 0.019 4E-07 46.8 3.7 36 2-39 46-81 (227)
276 PRK05541 adenylylsulfate kinas 95.3 0.02 4.4E-07 44.6 3.6 35 2-38 11-45 (176)
277 cd02019 NK Nucleoside/nucleoti 95.3 0.03 6.5E-07 36.4 3.8 30 3-36 4-33 (69)
278 cd04125 RabA_like RabA-like su 95.3 0.2 4.3E-06 39.3 9.3 66 105-172 47-117 (188)
279 PRK05595 replicative DNA helic 95.2 0.021 4.6E-07 51.5 4.0 37 2-40 205-242 (444)
280 cd00009 AAA The AAA+ (ATPases 95.2 0.021 4.6E-07 42.1 3.5 37 2-40 23-59 (151)
281 TIGR00475 selB selenocysteine- 95.2 0.05 1.1E-06 50.7 6.5 66 105-172 48-115 (581)
282 cd04108 Rab36_Rab34 Rab34/Rab3 95.2 0.052 1.1E-06 42.0 5.7 65 106-172 48-118 (170)
283 PRK08506 replicative DNA helic 95.2 0.023 5E-07 51.6 4.1 38 2-41 196-233 (472)
284 TIGR01393 lepA GTP-binding pro 95.2 0.085 1.8E-06 49.4 7.8 65 105-172 68-134 (595)
285 PRK08760 replicative DNA helic 95.1 0.022 4.7E-07 51.8 3.8 38 2-41 233-271 (476)
286 TIGR03880 KaiC_arch_3 KaiC dom 95.1 0.029 6.2E-07 45.6 4.1 36 3-40 21-56 (224)
287 PRK06893 DNA replication initi 95.1 0.021 4.7E-07 46.6 3.4 34 2-37 43-76 (229)
288 cd01121 Sms Sms (bacterial rad 95.1 0.025 5.5E-07 49.6 4.0 36 2-39 86-121 (372)
289 PTZ00035 Rad51 protein; Provis 95.1 0.035 7.5E-07 48.1 4.8 35 3-39 123-163 (337)
290 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.1 0.23 5E-06 37.8 9.1 64 106-172 50-119 (166)
291 cd04109 Rab28 Rab28 subfamily. 95.1 0.084 1.8E-06 42.5 6.8 65 106-172 49-121 (215)
292 cd02023 UMPK Uridine monophosp 95.1 0.025 5.4E-07 45.0 3.6 33 3-39 4-36 (198)
293 PRK09302 circadian clock prote 95.1 0.042 9.1E-07 50.5 5.5 36 3-40 278-313 (509)
294 PF05729 NACHT: NACHT domain 95.1 0.017 3.6E-07 44.1 2.5 26 1-26 3-28 (166)
295 PRK00093 GTP-binding protein D 95.1 0.19 4E-06 45.2 9.6 65 105-172 219-296 (435)
296 PLN03186 DNA repair protein RA 95.1 0.038 8.1E-07 47.9 4.8 38 3-40 128-169 (342)
297 cd01861 Rab6 Rab6 subfamily. 95.0 0.23 5E-06 37.5 8.8 65 106-172 48-117 (161)
298 PRK08116 hypothetical protein; 95.0 0.03 6.6E-07 46.9 4.0 34 2-37 118-151 (268)
299 TIGR03594 GTPase_EngA ribosome 95.0 0.2 4.2E-06 44.9 9.4 64 106-172 219-295 (429)
300 PRK05439 pantothenate kinase; 95.0 0.035 7.7E-07 47.4 4.4 38 3-40 91-128 (311)
301 PRK06749 replicative DNA helic 94.9 0.025 5.4E-07 50.7 3.6 37 2-40 190-226 (428)
302 PF13173 AAA_14: AAA domain 94.9 0.024 5.3E-07 41.7 2.9 36 2-40 6-41 (128)
303 cd01868 Rab11_like Rab11-like. 94.9 0.26 5.6E-06 37.5 8.8 65 106-172 51-120 (165)
304 PF08423 Rad51: Rad51; InterP 94.9 0.0076 1.7E-07 50.1 0.2 38 4-41 44-85 (256)
305 COG4088 Predicted nucleotide k 94.9 0.017 3.6E-07 45.9 2.1 37 2-40 5-41 (261)
306 smart00175 RAB Rab subfamily o 94.9 0.27 5.8E-06 37.2 8.9 64 106-172 48-117 (164)
307 TIGR00101 ureG urease accessor 94.9 0.16 3.4E-06 40.6 7.7 35 3-40 6-40 (199)
308 KOG1423|consensus 94.9 0.066 1.4E-06 45.1 5.6 65 105-171 118-196 (379)
309 PRK08181 transposase; Validate 94.9 0.024 5.3E-07 47.4 3.1 33 2-36 110-142 (269)
310 PRK09354 recA recombinase A; P 94.9 0.032 7E-07 48.3 4.0 36 3-40 65-100 (349)
311 TIGR00416 sms DNA repair prote 94.9 0.03 6.5E-07 50.6 3.8 36 2-39 98-133 (454)
312 PRK08084 DNA replication initi 94.8 0.031 6.7E-07 45.9 3.6 36 2-39 49-84 (235)
313 PF13401 AAA_22: AAA domain; P 94.8 0.028 6E-07 41.2 3.0 37 2-40 8-49 (131)
314 KOG0395|consensus 94.7 0.082 1.8E-06 42.1 5.6 65 105-172 49-120 (196)
315 PRK07933 thymidylate kinase; V 94.7 0.04 8.7E-07 44.5 3.9 33 3-37 5-37 (213)
316 TIGR00665 DnaB replicative DNA 94.7 0.038 8.3E-07 49.6 4.1 38 2-41 199-237 (434)
317 cd01867 Rab8_Rab10_Rab13_like 94.6 0.37 8E-06 36.8 9.1 64 106-172 51-120 (167)
318 PRK01906 tetraacyldisaccharide 94.6 0.038 8.3E-07 47.8 3.8 34 6-41 66-99 (338)
319 TIGR02475 CobW cobalamin biosy 94.6 0.98 2.1E-05 39.3 12.4 38 2-43 8-45 (341)
320 PRK07560 elongation factor EF- 94.6 0.086 1.9E-06 50.6 6.4 65 105-172 85-151 (731)
321 cd01885 EF2 EF2 (for archaea a 94.6 0.16 3.6E-06 41.2 7.1 65 105-172 71-137 (222)
322 COG1618 Predicted nucleotide k 94.5 0.054 1.2E-06 41.4 3.9 33 2-36 9-41 (179)
323 PF12846 AAA_10: AAA-like doma 94.5 0.039 8.5E-07 46.5 3.7 34 2-37 5-38 (304)
324 cd04119 RJL RJL (RabJ-Like) su 94.5 0.34 7.3E-06 36.7 8.5 66 105-172 47-122 (168)
325 PRK06217 hypothetical protein; 94.5 0.035 7.5E-07 43.6 2.9 30 2-38 5-34 (183)
326 PRK08006 replicative DNA helic 94.5 0.047 1E-06 49.5 4.1 37 2-40 228-265 (471)
327 PRK06904 replicative DNA helic 94.5 0.046 9.9E-07 49.6 4.0 37 2-40 225-262 (472)
328 PRK10751 molybdopterin-guanine 94.4 0.05 1.1E-06 42.4 3.7 35 3-39 11-45 (173)
329 PRK06921 hypothetical protein; 94.4 0.048 1E-06 45.7 3.8 33 2-36 121-154 (266)
330 PF07755 DUF1611: Protein of u 94.4 0.63 1.4E-05 39.5 10.4 132 2-169 117-266 (301)
331 PRK05748 replicative DNA helic 94.4 0.044 9.6E-07 49.5 3.9 38 2-41 207-245 (448)
332 COG2109 BtuR ATP:corrinoid ade 94.4 0.24 5.2E-06 38.8 7.2 30 5-36 35-64 (198)
333 COG0467 RAD55 RecA-superfamily 94.4 0.05 1.1E-06 45.3 3.9 40 2-43 27-66 (260)
334 cd04115 Rab33B_Rab33A Rab33B/R 94.4 0.27 5.9E-06 37.7 7.8 65 105-172 49-121 (170)
335 PF00154 RecA: recA bacterial 94.3 0.074 1.6E-06 45.6 4.8 33 6-40 61-93 (322)
336 PRK09518 bifunctional cytidyla 94.3 0.27 6E-06 47.1 9.2 65 105-172 321-395 (712)
337 TIGR02239 recomb_RAD51 DNA rep 94.3 0.11 2.4E-06 44.6 5.9 37 3-39 101-141 (316)
338 PRK08840 replicative DNA helic 94.3 0.053 1.1E-06 49.1 4.1 37 2-40 221-258 (464)
339 KOG0078|consensus 94.2 0.32 7E-06 38.6 7.7 80 108-194 62-146 (207)
340 cd04175 Rap1 Rap1 subgroup. T 94.2 0.32 6.9E-06 37.0 7.8 65 105-172 47-118 (164)
341 PLN03118 Rab family protein; P 94.2 0.17 3.6E-06 40.6 6.4 65 105-172 60-132 (211)
342 COG4240 Predicted kinase [Gene 94.2 0.058 1.3E-06 43.6 3.5 36 2-38 54-89 (300)
343 PRK06321 replicative DNA helic 94.1 0.059 1.3E-06 48.9 4.1 38 2-41 230-268 (472)
344 PRK09270 nucleoside triphospha 94.1 0.058 1.3E-06 44.0 3.7 35 3-39 38-73 (229)
345 cd01131 PilT Pilus retraction 94.0 1 2.2E-05 35.8 10.7 34 2-36 5-38 (198)
346 PTZ00141 elongation factor 1- 94.0 0.15 3.2E-06 46.1 6.3 65 105-171 83-156 (446)
347 cd04114 Rab30 Rab30 subfamily. 94.0 0.32 7E-06 37.1 7.5 64 106-172 55-124 (169)
348 cd01129 PulE-GspE PulE/GspE Th 94.0 0.59 1.3E-05 39.1 9.5 32 2-35 84-115 (264)
349 cd04152 Arl4_Arl7 Arl4/Arl7 su 93.9 0.26 5.7E-06 38.5 7.0 65 105-172 50-121 (183)
350 PRK09165 replicative DNA helic 93.9 0.071 1.5E-06 48.8 4.1 38 2-41 221-273 (497)
351 TIGR03172 probable selenium-de 93.9 0.058 1.3E-06 44.0 3.2 31 2-34 1-31 (232)
352 PLN03071 GTP-binding nuclear p 93.8 0.62 1.3E-05 37.7 9.2 65 105-172 60-129 (219)
353 PRK08118 topology modulation p 93.8 0.042 9.1E-07 42.6 2.2 21 2-22 5-25 (167)
354 PTZ00301 uridine kinase; Provi 93.8 0.1 2.2E-06 42.1 4.4 35 3-38 8-43 (210)
355 PF00910 RNA_helicase: RNA hel 93.8 0.064 1.4E-06 38.2 2.9 24 2-25 2-25 (107)
356 cd01853 Toc34_like Toc34-like 93.8 1.2 2.5E-05 37.0 10.8 69 105-173 77-162 (249)
357 cd01672 TMPK Thymidine monopho 93.8 0.082 1.8E-06 41.6 3.8 32 3-36 5-36 (200)
358 COG5623 CLP1 Predicted GTPase 93.8 0.16 3.4E-06 42.9 5.4 32 9-42 110-141 (424)
359 PRK05636 replicative DNA helic 93.7 0.076 1.6E-06 48.6 4.0 37 2-40 269-306 (505)
360 PF13238 AAA_18: AAA domain; P 93.7 0.04 8.6E-07 40.1 1.7 21 2-22 2-22 (129)
361 PF02223 Thymidylate_kin: Thym 93.7 0.1 2.2E-06 41.0 4.2 30 7-39 5-34 (186)
362 TIGR00041 DTMP_kinase thymidyl 93.6 0.091 2E-06 41.5 3.9 33 2-36 7-39 (195)
363 cd04128 Spg1 Spg1p. Spg1p (se 93.6 0.72 1.6E-05 36.1 8.9 65 105-172 47-116 (182)
364 cd04166 CysN_ATPS CysN_ATPS su 93.6 0.31 6.8E-06 39.0 7.0 66 105-172 75-142 (208)
365 PF01935 DUF87: Domain of unkn 93.6 0.095 2E-06 42.6 4.0 33 5-39 30-63 (229)
366 COG3367 Uncharacterized conser 93.5 1.2 2.6E-05 37.9 10.3 132 3-169 154-297 (339)
367 cd04116 Rab9 Rab9 subfamily. 93.5 0.62 1.3E-05 35.6 8.3 65 105-172 52-126 (170)
368 COG1102 Cmk Cytidylate kinase 93.5 0.058 1.3E-06 41.2 2.3 23 2-24 4-26 (179)
369 cd04117 Rab15 Rab15 subfamily. 93.5 0.8 1.7E-05 34.8 8.8 65 106-172 48-117 (161)
370 cd02024 NRK1 Nicotinamide ribo 93.4 0.062 1.3E-06 42.4 2.6 30 2-37 3-32 (187)
371 PF00004 AAA: ATPase family as 93.4 0.094 2E-06 38.2 3.5 34 2-40 2-35 (132)
372 PF00308 Bac_DnaA: Bacterial d 93.4 0.073 1.6E-06 43.2 3.1 38 2-39 38-75 (219)
373 TIGR00554 panK_bact pantothena 93.4 0.12 2.6E-06 43.8 4.3 38 3-40 67-104 (290)
374 PRK05800 cobU adenosylcobinami 93.4 0.46 9.9E-06 36.9 7.3 30 2-36 5-34 (170)
375 PRK07261 topology modulation p 93.4 0.069 1.5E-06 41.5 2.7 21 2-22 4-24 (171)
376 PRK13973 thymidylate kinase; P 93.4 0.1 2.3E-06 42.0 3.9 29 5-35 10-38 (213)
377 cd04164 trmE TrmE (MnmE, ThdF, 93.3 0.81 1.8E-05 34.1 8.6 63 105-172 47-119 (157)
378 PRK07413 hypothetical protein; 93.3 0.44 9.5E-06 41.8 7.7 30 6-37 27-62 (382)
379 PRK11537 putative GTP-binding 93.3 1 2.2E-05 38.7 10.0 142 2-172 8-162 (318)
380 PRK07004 replicative DNA helic 93.3 0.091 2E-06 47.6 3.7 38 2-41 217-255 (460)
381 COG1160 Predicted GTPases [Gen 93.2 1.7 3.6E-05 38.8 11.3 65 105-172 49-124 (444)
382 PF13191 AAA_16: AAA ATPase do 93.2 0.1 2.2E-06 40.5 3.5 37 2-40 28-64 (185)
383 COG2403 Predicted GTPase [Gene 93.1 0.089 1.9E-06 45.4 3.2 33 2-36 131-163 (449)
384 PLN02796 D-glycerate 3-kinase 93.0 0.11 2.4E-06 44.9 3.6 35 3-39 105-139 (347)
385 COG0468 RecA RecA/RadA recombi 92.9 0.13 2.8E-06 43.2 3.8 34 5-40 67-100 (279)
386 PF13604 AAA_30: AAA domain; P 92.9 0.12 2.6E-06 41.1 3.5 34 2-37 22-55 (196)
387 cd01882 BMS1 Bms1. Bms1 is an 92.8 0.49 1.1E-05 38.5 7.1 65 105-172 81-145 (225)
388 PF00931 NB-ARC: NB-ARC domain 92.8 0.073 1.6E-06 44.7 2.2 39 2-40 23-61 (287)
389 PLN03046 D-glycerate 3-kinase; 92.7 0.14 3E-06 45.4 3.9 35 3-39 217-251 (460)
390 PF05970 PIF1: PIF1-like helic 92.6 0.1 2.3E-06 45.7 3.0 33 1-35 25-57 (364)
391 cd04177 RSR1 RSR1 subgroup. R 92.6 0.64 1.4E-05 35.5 7.2 64 106-172 48-118 (168)
392 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 92.5 0.55 1.2E-05 38.2 7.0 65 105-172 47-117 (222)
393 TIGR00362 DnaA chromosomal rep 92.4 0.14 2.9E-06 45.7 3.6 37 2-38 140-176 (405)
394 PRK00131 aroK shikimate kinase 92.4 0.11 2.4E-06 39.9 2.7 21 2-22 8-28 (175)
395 PF03266 NTPase_1: NTPase; In 92.4 0.17 3.6E-06 39.3 3.6 28 2-31 3-30 (168)
396 COG0125 Tmk Thymidylate kinase 92.4 0.18 3.8E-06 40.6 3.8 28 6-35 11-38 (208)
397 PRK05537 bifunctional sulfate 92.3 0.13 2.9E-06 47.7 3.5 36 2-39 396-432 (568)
398 PRK03003 GTP-binding protein D 92.3 0.74 1.6E-05 41.9 8.3 64 105-172 257-334 (472)
399 cd00882 Ras_like_GTPase Ras-li 92.3 0.53 1.2E-05 34.3 6.2 65 105-172 43-114 (157)
400 PRK10463 hydrogenase nickel in 92.3 0.89 1.9E-05 38.5 8.0 33 5-40 111-143 (290)
401 PRK05506 bifunctional sulfate 92.2 0.14 3E-06 48.4 3.5 38 2-41 464-501 (632)
402 PLN00023 GTP-binding protein; 92.2 2.4 5.2E-05 36.5 10.6 66 105-172 81-163 (334)
403 KOG3062|consensus 92.2 0.78 1.7E-05 37.1 7.1 35 1-35 4-38 (281)
404 PF13086 AAA_11: AAA domain; P 92.2 0.14 3.1E-06 41.2 3.2 33 2-36 21-61 (236)
405 PLN02924 thymidylate kinase 92.2 0.15 3.3E-06 41.4 3.3 30 4-35 22-51 (220)
406 cd00046 DEXDc DEAD-like helica 92.1 0.21 4.6E-06 36.2 3.8 33 2-34 4-36 (144)
407 PF07728 AAA_5: AAA domain (dy 92.1 0.16 3.5E-06 37.7 3.1 40 3-48 4-43 (139)
408 TIGR02782 TrbB_P P-type conjug 92.1 0.16 3.5E-06 43.2 3.5 34 2-35 136-169 (299)
409 cd01883 EF1_alpha Eukaryotic e 92.0 0.45 9.7E-06 38.5 5.9 66 105-172 75-149 (219)
410 PRK13507 formate--tetrahydrofo 92.0 0.24 5.1E-06 45.2 4.5 45 2-51 71-115 (587)
411 PRK13946 shikimate kinase; Pro 91.9 0.14 3E-06 40.3 2.7 30 2-38 14-43 (184)
412 PLN02759 Formate--tetrahydrofo 91.9 0.32 6.9E-06 44.7 5.2 46 2-52 77-123 (637)
413 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.9 0.17 3.8E-06 40.3 3.3 43 2-46 42-86 (205)
414 PRK00149 dnaA chromosomal repl 91.8 0.19 4.2E-06 45.4 3.8 37 2-38 152-188 (450)
415 TIGR02640 gas_vesic_GvpN gas v 91.7 0.19 4.2E-06 41.9 3.5 40 3-48 26-65 (262)
416 TIGR02655 circ_KaiC circadian 91.7 0.21 4.6E-06 45.6 4.0 35 3-39 26-61 (484)
417 PRK05124 cysN sulfate adenylyl 91.7 0.45 9.7E-06 43.3 6.0 66 105-172 105-172 (474)
418 TIGR02034 CysN sulfate adenyly 91.7 0.36 7.7E-06 43.1 5.3 66 105-172 78-145 (406)
419 PRK12422 chromosomal replicati 91.6 0.18 3.9E-06 45.5 3.4 35 2-38 145-179 (445)
420 cd01888 eIF2_gamma eIF2-gamma 91.5 0.56 1.2E-05 37.4 5.9 64 107-172 83-149 (203)
421 PF02421 FeoB_N: Ferrous iron 91.4 1.1 2.4E-05 34.2 7.1 64 105-171 45-116 (156)
422 PRK06547 hypothetical protein; 91.4 0.16 3.5E-06 39.5 2.6 21 2-22 19-39 (172)
423 PRK07773 replicative DNA helic 91.4 0.22 4.7E-06 49.0 4.0 38 2-41 221-259 (886)
424 PF06414 Zeta_toxin: Zeta toxi 91.3 0.11 2.3E-06 41.5 1.5 35 2-40 19-53 (199)
425 COG0572 Udk Uridine kinase [Nu 91.3 0.24 5.2E-06 39.9 3.5 34 3-40 13-46 (218)
426 PRK00411 cdc6 cell division co 91.3 0.33 7.2E-06 42.9 4.8 39 2-40 59-97 (394)
427 PRK06851 hypothetical protein; 91.3 0.42 9.1E-06 41.8 5.2 40 2-43 218-257 (367)
428 PRK14489 putative bifunctional 91.3 0.4 8.6E-06 42.1 5.2 35 4-40 211-245 (366)
429 PRK06761 hypothetical protein; 91.2 0.25 5.3E-06 41.7 3.6 35 2-38 7-42 (282)
430 KOG0461|consensus 91.2 1.7 3.7E-05 37.6 8.5 66 105-172 68-134 (522)
431 PTZ00132 GTP-binding nuclear p 91.2 0.93 2E-05 36.3 6.9 65 105-172 56-125 (215)
432 TIGR00235 udk uridine kinase. 91.1 0.19 4.1E-06 40.3 2.7 33 2-38 10-42 (207)
433 PRK12339 2-phosphoglycerate ki 91.1 0.14 3.1E-06 40.8 1.9 32 2-39 7-38 (197)
434 TIGR02880 cbbX_cfxQ probable R 91.0 0.24 5.3E-06 41.9 3.4 36 2-37 62-99 (284)
435 COG1855 ATPase (PilT family) [ 91.0 0.23 4.9E-06 44.3 3.3 30 2-33 267-296 (604)
436 COG1663 LpxK Tetraacyldisaccha 90.9 0.21 4.5E-06 42.8 2.9 33 6-40 57-89 (336)
437 TIGR01313 therm_gnt_kin carboh 90.9 0.17 3.7E-06 38.7 2.3 31 2-39 2-32 (163)
438 PF00437 T2SE: Type II/IV secr 90.9 0.2 4.3E-06 41.9 2.8 32 2-35 131-162 (270)
439 PF01268 FTHFS: Formate--tetra 90.9 0.11 2.5E-06 47.2 1.3 46 2-52 62-107 (557)
440 COG2074 2-phosphoglycerate kin 90.8 0.15 3.2E-06 41.9 1.8 23 2-24 93-115 (299)
441 cd03113 CTGs CTP synthetase (C 90.8 5.4 0.00012 32.9 10.7 33 7-41 11-43 (255)
442 PRK14087 dnaA chromosomal repl 90.7 0.31 6.7E-06 44.0 4.1 37 2-38 145-181 (450)
443 TIGR00437 feoB ferrous iron tr 90.7 0.84 1.8E-05 42.8 7.0 65 105-172 39-111 (591)
444 cd01852 AIG1 AIG1 (avrRpt2-ind 90.7 2.4 5.2E-05 33.5 8.8 67 105-172 47-128 (196)
445 cd01890 LepA LepA subfamily. 90.7 1.4 3.1E-05 33.8 7.3 64 105-172 65-131 (179)
446 PF13671 AAA_33: AAA domain; P 90.6 0.12 2.5E-06 38.5 1.0 31 2-39 3-33 (143)
447 PRK00698 tmk thymidylate kinas 90.6 0.31 6.7E-06 38.7 3.6 32 2-35 7-38 (205)
448 cd02021 GntK Gluconate kinase 90.6 0.16 3.5E-06 38.2 1.9 32 2-40 3-34 (150)
449 PTZ00327 eukaryotic translatio 90.6 0.66 1.4E-05 42.0 5.9 65 106-172 116-183 (460)
450 COG0305 DnaB Replicative DNA h 90.3 0.42 9.2E-06 42.6 4.4 38 2-40 200-237 (435)
451 PRK12317 elongation factor 1-a 90.3 0.89 1.9E-05 40.8 6.6 66 105-172 82-151 (425)
452 COG2759 MIS1 Formyltetrahydrof 90.2 0.18 4E-06 44.6 2.0 42 5-51 63-104 (554)
453 PRK13695 putative NTPase; Prov 90.2 0.42 9.1E-06 37.0 3.9 29 2-32 4-32 (174)
454 cd02020 CMPK Cytidine monophos 90.2 0.24 5.2E-06 36.9 2.5 21 2-22 3-23 (147)
455 PRK13764 ATPase; Provisional 90.1 0.33 7.1E-06 45.3 3.7 32 2-35 261-292 (602)
456 PRK12338 hypothetical protein; 90.0 0.18 4E-06 43.1 1.8 33 2-40 8-40 (319)
457 PF08303 tRNA_lig_kinase: tRNA 90.0 0.2 4.3E-06 38.5 1.8 17 7-23 8-24 (168)
458 KOG0462|consensus 90.0 1.1 2.3E-05 41.0 6.6 63 107-172 125-189 (650)
459 PRK14491 putative bifunctional 89.9 0.49 1.1E-05 44.4 4.7 33 5-39 17-49 (597)
460 COG1100 GTPase SAR1 and relate 89.8 0.9 2E-05 36.3 5.7 65 106-172 53-123 (219)
461 PRK13976 thymidylate kinase; P 89.8 0.4 8.7E-06 38.6 3.6 30 4-34 6-36 (209)
462 TIGR03783 Bac_Flav_CT_G Bacter 89.7 0.4 8.6E-06 46.7 4.1 36 2-39 442-477 (829)
463 PRK04220 2-phosphoglycerate ki 89.7 0.32 7E-06 41.3 3.1 33 2-40 96-128 (301)
464 PLN02348 phosphoribulokinase 89.7 0.45 9.7E-06 41.9 4.0 37 3-39 54-103 (395)
465 cd02026 PRK Phosphoribulokinas 89.7 0.29 6.2E-06 41.2 2.8 31 3-35 4-34 (273)
466 CHL00181 cbbX CbbX; Provisiona 89.6 0.36 7.7E-06 40.9 3.3 36 2-37 63-100 (287)
467 PTZ00386 formyl tetrahydrofola 89.5 0.48 1E-05 43.6 4.1 46 2-52 76-122 (625)
468 cd01889 SelB_euk SelB subfamil 89.5 1.8 3.9E-05 34.0 7.1 66 105-172 66-132 (192)
469 PF00350 Dynamin_N: Dynamin fa 89.4 0.74 1.6E-05 35.1 4.7 61 106-169 100-167 (168)
470 PRK14086 dnaA chromosomal repl 89.4 0.44 9.5E-06 44.5 3.9 37 2-38 318-354 (617)
471 PF07726 AAA_3: ATPase family 89.3 0.14 2.9E-06 37.8 0.5 22 5-26 6-27 (131)
472 PRK13948 shikimate kinase; Pro 89.3 0.36 7.9E-06 37.9 2.9 30 2-38 14-43 (182)
473 PF07724 AAA_2: AAA domain (Cd 89.3 0.5 1.1E-05 36.7 3.7 37 3-41 8-45 (171)
474 smart00053 DYNc Dynamin, GTPas 89.3 8.6 0.00019 31.7 11.0 65 106-172 124-204 (240)
475 PF01202 SKI: Shikimate kinase 89.2 0.3 6.4E-06 37.3 2.3 25 8-39 2-26 (158)
476 COG3854 SpoIIIAA ncharacterize 89.2 0.53 1.1E-05 38.4 3.7 33 5-37 144-179 (308)
477 PF10662 PduV-EutP: Ethanolami 89.2 6 0.00013 29.7 9.2 63 105-168 62-127 (143)
478 cd00227 CPT Chloramphenicol (C 89.1 0.32 6.9E-06 37.8 2.5 21 2-22 6-26 (175)
479 PRK05506 bifunctional sulfate 89.1 0.83 1.8E-05 43.2 5.6 66 105-172 102-169 (632)
480 cd04103 Centaurin_gamma Centau 89.0 2.2 4.8E-05 32.4 7.1 60 106-171 46-110 (158)
481 TIGR01420 pilT_fam pilus retra 89.0 4 8.6E-05 35.5 9.5 33 2-35 126-158 (343)
482 PRK07413 hypothetical protein; 89.0 1.3 2.8E-05 38.9 6.3 30 6-37 208-243 (382)
483 COG0480 FusA Translation elong 88.9 1.7 3.6E-05 41.5 7.4 63 106-171 75-139 (697)
484 PF02367 UPF0079: Uncharacteri 88.6 0.29 6.3E-06 35.8 1.8 21 5-25 22-42 (123)
485 PF13521 AAA_28: AAA domain; P 88.6 0.36 7.7E-06 37.0 2.4 25 2-32 3-27 (163)
486 PRK05306 infB translation init 88.6 1.7 3.6E-05 42.2 7.3 65 105-172 335-401 (787)
487 PRK10512 selenocysteinyl-tRNA- 88.6 1.5 3.3E-05 41.3 7.0 65 106-172 50-116 (614)
488 PRK13833 conjugal transfer pro 88.5 0.58 1.3E-05 40.3 3.8 34 2-35 148-181 (323)
489 TIGR00376 DNA helicase, putati 88.4 0.47 1E-05 44.9 3.5 32 2-35 177-208 (637)
490 TIGR03015 pepcterm_ATPase puta 88.4 0.35 7.5E-06 40.2 2.4 23 2-24 47-69 (269)
491 TIGR02881 spore_V_K stage V sp 88.4 0.38 8.1E-06 40.1 2.6 25 2-26 46-70 (261)
492 COG0532 InfB Translation initi 88.4 1.3 2.8E-05 40.2 6.0 65 107-172 55-119 (509)
493 PRK09866 hypothetical protein; 88.3 2.5 5.5E-05 39.8 7.9 64 106-172 229-301 (741)
494 PF09848 DUF2075: Uncharacteri 88.2 0.45 9.7E-06 41.5 3.1 35 2-38 5-41 (352)
495 PRK11058 GTPase HflX; Provisio 88.2 6.3 0.00014 35.5 10.3 63 108-173 246-322 (426)
496 PRK13894 conjugal transfer ATP 88.2 0.62 1.4E-05 40.1 3.9 36 2-37 152-187 (319)
497 PF02562 PhoH: PhoH-like prote 88.1 0.46 9.9E-06 38.1 2.8 33 2-34 23-55 (205)
498 PRK10646 ADP-binding protein; 88.1 0.34 7.4E-06 36.9 1.9 21 4-24 34-54 (153)
499 TIGR02788 VirB11 P-type DNA tr 88.0 4.3 9.4E-05 34.7 8.9 31 2-35 148-178 (308)
500 PHA02530 pseT polynucleotide k 88.0 0.39 8.4E-06 40.8 2.5 32 2-39 6-37 (300)
No 1
>KOG3022|consensus
Probab=100.00 E-value=2.1e-35 Score=236.68 Aligned_cols=225 Identities=37% Similarity=0.618 Sum_probs=197.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCcccc-ccccCceeecCCCCcc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIP-LVNYGVKCLSMGNLIT 79 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 79 (261)
+|.|+||||||||+|+|||..||+.| .+|.++|.|..++++..++|.+.+.-....+.+.| ....++.++..|+...
T Consensus 51 ~VlSGKGGVGKSTvt~nla~~La~~g--~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~ 128 (300)
T KOG3022|consen 51 LVLSGKGGVGKSTVTVNLALALASEG--KKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLK 128 (300)
T ss_pred EEEeCCCCCchhHHHHHHHHHHhcCC--CcEEEEeecccCCCchhhcCCCCceeeecCCCceeeeecCCeEEEEeeeecC
Confidence 58899999999999999999999999 99999999999999999999998876666777777 6788999999999887
Q ss_pred c-chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcC-CCeEEEEeCCCcchHHHHHHHHHHHHh
Q psy14655 80 E-KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLF-IDTAIIITIPDTMSLQVAQRGYTMFKK 157 (261)
Q Consensus 80 ~-~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~-ad~viiv~~~~~~s~~~~~~~~~~l~~ 157 (261)
. .....|++......|++++....+.+.||+|||||||.++....+...+. +|..++|++|...++.++.+-++++++
T Consensus 129 ~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K 208 (300)
T KOG3022|consen 129 PRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRK 208 (300)
T ss_pred CCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhh
Confidence 5 66888999999999999999999999999999999999988777776544 377999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCCCCCCcccccccc-hhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCC
Q psy14655 158 LNIPVAGLVMNMNSVLCPSCNHMFELYEN-NLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGN 236 (261)
Q Consensus 158 ~~~~~~giv~N~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~ 236 (261)
.+++++|+|-||....|+.|.+.+++|.. +.+++.++ +|.+.+. .|| -+..+.++.+.|.
T Consensus 209 ~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~----------~glp~Lg-~iP--------ld~~i~~~~d~G~ 269 (300)
T KOG3022|consen 209 AGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEE----------LGLPLLG-SLP--------LDPLIAESSDSGV 269 (300)
T ss_pred cCCceEEEEeccccccCCCCCCcceeccCccHHHHHHH----------cCCCeEe-ecC--------CCHHHHHhccCCC
Confidence 99999999999999999999999999984 55666555 5655555 499 7888999999999
Q ss_pred cchhhhhhhh
Q psy14655 237 TVHHHHVLNL 246 (261)
Q Consensus 237 ~v~~~~~~~~ 246 (261)
|+.+..+.+.
T Consensus 270 ~~v~~~p~s~ 279 (300)
T KOG3022|consen 270 PFVEEYPDSP 279 (300)
T ss_pred eeEecCCCch
Confidence 8765544433
No 2
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=256.50 Aligned_cols=226 Identities=34% Similarity=0.613 Sum_probs=164.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC-CCCCcCCccccccccCceeecCCCCcc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT-PLLNKDNLMIPLVNYGVKCLSMGNLIT 79 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (261)
+|+|+||||||||+|+|||.+||+.| +||++||+|+|+++++.+||.+.. +.......+.+....++...+.+....
T Consensus 111 aV~S~KGGVGKTT~avNLA~aLA~~G--~rVlLID~D~qgps~~~~lg~~~~~~~~~~~~~i~p~~~~g~~~~~~~~l~~ 188 (369)
T PRK11670 111 AVSSGKGGVGKSSTAVNLALALAAEG--AKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYLVT 188 (369)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCCCCCCcchhcCCcccCCcccCCceeeeeeccCcccccHHHhcC
Confidence 48999999999999999999999999 999999999999998888887532 221112222232222332222222111
Q ss_pred cchhhhhhchHHHHHHHHHHH-HhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC
Q psy14655 80 EKSAAIWRGLMVMQALNKLTV-QVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL 158 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~-~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 158 (261)
......+.+......+.+.+. .+. ++||||||||||+.++.........++|.+++|+.|+..++.++.+.++++.+.
T Consensus 189 ~~~~~i~~g~~~~~~l~~~l~~~~~-~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~ 267 (369)
T PRK11670 189 DDNAMVWRGPMASKALMQMLQETLW-PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKV 267 (369)
T ss_pred cCcceeecCcchHHHHHHHHHHHhh-ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhcc
Confidence 122223344444556777764 445 889999999999998765444333348999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCCCCcccccccch-hHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCCc
Q psy14655 159 NIPVAGLVMNMNSVLCPSCNHMFELYENN-LHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNT 237 (261)
Q Consensus 159 ~~~~~giv~N~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~ 237 (261)
+++++|+|.||+...|+.|.+...+|... ...+.++ +|.+++. .|| ++..+.+|...|+|
T Consensus 268 ~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~----------~~~~ll~-~IP--------~~~~I~ea~~~G~P 328 (369)
T PRK11670 268 EVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEK----------YHTQLLG-QMP--------LHISLREDLDRGTP 328 (369)
T ss_pred CCCeEEEEEcCCccccCCccchhhhcccchHHHHHHH----------cCCcEEE-EeC--------CChHHHHHHHCCCc
Confidence 99999999999998888888777777633 3333332 5666665 599 99999999999999
Q ss_pred chhhhhhhhcc
Q psy14655 238 VHHHHVLNLIG 248 (261)
Q Consensus 238 v~~~~~~~~~~ 248 (261)
+..+++.+.++
T Consensus 329 v~~~~p~s~~a 339 (369)
T PRK11670 329 TVVSRPESEFT 339 (369)
T ss_pred EEEeCCCCHHH
Confidence 98776544443
No 3
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=100.00 E-value=4e-33 Score=244.65 Aligned_cols=213 Identities=16% Similarity=0.155 Sum_probs=157.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC-----------------CcCCcccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL-----------------NKDNLMIP 63 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 63 (261)
+|+|.||||||||+|+|||..||+.| +|||+||+|||+ +++.+||..+.... ...+++.+
T Consensus 125 av~n~KGGvGKTTta~nLA~~LA~~G--~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i~~ 201 (405)
T PRK13869 125 AVTNFKGGSGKTTTSAHLAQYLALQG--YRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIRP 201 (405)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhcC--CceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHHheec
Confidence 47899999999999999999999999 999999999996 56778886542211 11123334
Q ss_pred ccccCceeecCCCCcccchhhhh--------hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEE
Q psy14655 64 LVNYGVKCLSMGNLITEKSAAIW--------RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAI 135 (261)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~vi 135 (261)
...+|++++|++..+........ ........|++.++.+. ++||||||||||+++..+.+++.+ ||.+|
T Consensus 202 t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~~al~a--Ad~vi 278 (405)
T PRK13869 202 TYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTLSGLCA--ATSMV 278 (405)
T ss_pred cCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHHHHHHH--cCEEE
Confidence 45678999998765432221110 00011245788888888 899999999999999999888887 99999
Q ss_pred EEeCCCcchHHHHHHHHHHH-------HhC--C--CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhh
Q psy14655 136 IITIPDTMSLQVAQRGYTMF-------KKL--N--IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKL 204 (261)
Q Consensus 136 iv~~~~~~s~~~~~~~~~~l-------~~~--~--~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (261)
+|+.|+..++.++..+++++ .+. + +..+++|+|+++. +..... .+.+..++.
T Consensus 279 iPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~-------~~~~~~----------~~~~~l~~~ 341 (405)
T PRK13869 279 ITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP-------QDAPQT----------KVAALLRNM 341 (405)
T ss_pred EecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC-------CCcHHH----------HHHHHHHHH
Confidence 99999999999998887632 222 2 3467899999542 111111 122234555
Q ss_pred hcccccccccCcchhhhhhhccccCCCCCCCCcchhhhhh
Q psy14655 205 YGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 205 ~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~~ 244 (261)
+|..++.+.|| ++.++.+|...|+||+++++.
T Consensus 342 ~~~~vl~~~I~--------~s~ai~~a~~~~~tv~e~~~~ 373 (405)
T PRK13869 342 FEDHVLTNPMV--------KSAAVSDAGLTKQTLYEIGRE 373 (405)
T ss_pred hhhhhccCcCc--------chHHHHhhHhcCCChhhcCCC
Confidence 78888888999 999999999999999998755
No 4
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.98 E-value=1.1e-31 Score=222.93 Aligned_cols=204 Identities=22% Similarity=0.319 Sum_probs=152.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCC-CCC--------cCCccccccccCcee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP-LLN--------KDNLMIPLVNYGVKC 71 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~l~~ 71 (261)
+|+|+||||||||+|+|||.+|+++| ++|++||+|+|+++++.++|.+... .+. ..+.+.. ...++++
T Consensus 4 ~v~~~KGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 80 (251)
T TIGR01969 4 TIASGKGGTGKTTITANLGVALAKLG--KKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYE-GPFGVKV 80 (251)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEe-CCCCEEE
Confidence 48899999999999999999999999 9999999999887888899886431 111 0111111 2357899
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
+|++....... ......+.+.+..+. .+||||||||||+.+.....++.. ||.+++|+.|+..++..+.++
T Consensus 81 lp~~~~~~~~~------~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~l~~--ad~vliv~~~~~~s~~~~~~~ 151 (251)
T TIGR01969 81 IPAGVSLEGLR------KADPDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTALAA--ADELLLVVNPEISSITDALKT 151 (251)
T ss_pred EeCCCCHHHHh------hcCHHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHHHHh--CCeEEEEECCCCchHHHHHHH
Confidence 98775432111 112345778888887 899999999999999888887776 999999999999999998888
Q ss_pred HHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNS 231 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a 231 (261)
++.+...+.+.+++|+|+++.. ......+ ...+.+|.+++ ..|| ++..+.+|
T Consensus 152 ~~~~~~~~~~~~~vv~N~~~~~--------------~~~~~~~-----~l~~~~~~~~l-~~Ip--------~~~~~~~a 203 (251)
T TIGR01969 152 KIVAEKLGTAILGVVLNRVTRD--------------KTELGRE-----EIETILEVPVL-GVVP--------EDPEVRRA 203 (251)
T ss_pred HHHHHhcCCceEEEEEECCCch--------------hhhhHHH-----HHHHhhCCcEE-EEec--------CCHhHHHH
Confidence 8888877888899999995421 0011111 12233566666 3589 88899999
Q ss_pred CCCCCcchhhhhh
Q psy14655 232 HGHGNTVHHHHVL 244 (261)
Q Consensus 232 ~~~g~~v~~~~~~ 244 (261)
...|+|++++.+.
T Consensus 204 ~~~g~~v~~~~~~ 216 (251)
T TIGR01969 204 AAFGEPVVIYNPN 216 (251)
T ss_pred HHcCCceEEeCCC
Confidence 9999999876544
No 5
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.97 E-value=8.7e-32 Score=236.12 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=154.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC-----------------CcCCcccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL-----------------NKDNLMIP 63 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 63 (261)
+|+|.||||||||+|+|||.+||+.| +|||+||+|+|+ +++.++|..+...+ ...+.+.+
T Consensus 108 ~v~n~KGGvGKTT~a~nLA~~La~~G--~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 184 (387)
T TIGR03453 108 AVTNFKGGSGKTTTAAHLAQYLALRG--YRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSEIIRK 184 (387)
T ss_pred EEEccCCCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHhhccc
Confidence 47899999999999999999999999 999999999996 57778876543211 11223334
Q ss_pred ccccCceeecCCCCcccchhhhh----h----chHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEE
Q psy14655 64 LVNYGVKCLSMGNLITEKSAAIW----R----GLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAI 135 (261)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~----~----~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~vi 135 (261)
...++++++|++........... . .......+.+.++.+. ++||||||||||+.+....+++.+ ||.+|
T Consensus 185 ~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~al~a--ad~vi 261 (387)
T TIGR03453 185 TYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLSALCA--ATGVL 261 (387)
T ss_pred CCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHHHHHH--cCeeE
Confidence 45578999997754432111110 0 0111245788888888 899999999999999988888887 99999
Q ss_pred EEeCCCcchHHHHHHHHHHH-------HhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhh
Q psy14655 136 IITIPDTMSLQVAQRGYTMF-------KKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKL 204 (261)
Q Consensus 136 iv~~~~~~s~~~~~~~~~~l-------~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (261)
+|+.|+..++.++..+++.+ ... ++..+++|+|+++. +..... ...+..++.
T Consensus 262 ipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~-------~~~~~~----------~~~~~l~~~ 324 (387)
T TIGR03453 262 ITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP-------NDGPQA----------QMVAFLRSL 324 (387)
T ss_pred EcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC-------CCccHH----------HHHHHHHHH
Confidence 99999999888877655433 222 24568899999542 111111 122234555
Q ss_pred hcccccccccCcchhhhhhhccccCCCCCCCCcchhhhhh
Q psy14655 205 YGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 205 ~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~~ 244 (261)
+|..++.+.|| ++..+.+|...|.||+++.+.
T Consensus 325 ~~~~vl~~~I~--------~~~~~~~a~~~g~~V~e~~~~ 356 (387)
T TIGR03453 325 FGDHVLTNPML--------KSTAISDAGLTKQTLYEVERS 356 (387)
T ss_pred hcccccccccc--------ccHHHHhhhhcCCCcEEECCC
Confidence 78888889999 999999999999999988654
No 6
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.97 E-value=1.3e-31 Score=233.79 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=154.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec-CCCCCCcccccCCCCCCCC---------------CcCCccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA-DVFGPSIPILMNLPDTPLL---------------NKDNLMIPL 64 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~-D~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ 64 (261)
+|+|.||||||||+|+|||.+||++| +|||+||+ |||++ ++.++|..+.... .....+.+.
T Consensus 110 ai~n~KGGVGKTT~a~nLA~~LA~~G--~rVLlID~~DpQ~n-lt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~t 186 (388)
T PRK13705 110 GVAAHKGGVYKTSVSVHLAQDLALKG--LRVLLVEGNDPQGT-ASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAIKPT 186 (388)
T ss_pred EEECCCCCchHHHHHHHHHHHHHhcC--CCeEEEcCCCCCCc-hhhhcCcCccccccccccHHHHHhcCCCchhhheecC
Confidence 47899999999999999999999999 99999996 99985 5567776432110 012233444
Q ss_pred cccCceeecCCCCcccchhhhhhch-------HHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEE
Q psy14655 65 VNYGVKCLSMGNLITEKSAAIWRGL-------MVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIII 137 (261)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv 137 (261)
..++++++|++..+........... .....+++.++.++ ++||||||||||+++..+.+++.+ ||.+|+|
T Consensus 187 ~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~nal~A--aD~viiP 263 (388)
T PRK13705 187 CWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTINVVCA--ADVLIVP 263 (388)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHHHHHH--cCEEEEe
Confidence 5679999998765432221111100 12345777888888 899999999999999999988887 9999999
Q ss_pred eCCCcchHHHHHHHHHHHHhC-------C-CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccc
Q psy14655 138 TIPDTMSLQVAQRGYTMFKKL-------N-IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHM 209 (261)
Q Consensus 138 ~~~~~~s~~~~~~~~~~l~~~-------~-~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 209 (261)
+.|+..++.++..+++.+... + -+.+.+++|+++. +.. . . ...+.+..++.||..+
T Consensus 264 ~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~-------~~~-------~-~-~~~~~~~l~~~~~~~v 327 (388)
T PRK13705 264 TPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN-------SNG-------S-Q-SPWMEEQIRDAWGSMV 327 (388)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC-------CCc-------h-H-HHHHHHHHHHHhcccc
Confidence 999999999988877666532 1 1346688998442 100 0 0 0112233455688889
Q ss_pred cccccCcchhhhhhhccccCCCCCCCCcchhhhh
Q psy14655 210 WNFLIPLCNLIIKIRNVAYGNSHGHGNTVHHHHV 243 (261)
Q Consensus 210 ~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~ 243 (261)
+.+.|| ++.++.+|...++++++++.
T Consensus 328 l~~~I~--------~s~~i~~a~~~~~ti~e~~~ 353 (388)
T PRK13705 328 LKNVVR--------ETDEVGKGQIRMRTVFEQAI 353 (388)
T ss_pred ccccCc--------ccchHhhhhhcCCCceeEcc
Confidence 999999 99999999999999998874
No 7
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.97 E-value=3.5e-31 Score=230.58 Aligned_cols=215 Identities=16% Similarity=0.219 Sum_probs=156.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec-CCCCCCcccccCCCCCCCCC---------------cCCccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA-DVFGPSIPILMNLPDTPLLN---------------KDNLMIPL 64 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~-D~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 64 (261)
+|+|.||||||||+|+|||.+||++| +|||+||+ |||++ ++.+||..+...+. ....+.+.
T Consensus 110 av~n~KGGVGKTTta~nLA~~LA~~G--~rVLlIDl~DpQ~n-lt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i~~t 186 (387)
T PHA02519 110 AVMSHKGGVYKTSSAVHTAQWLALQG--HRVLLIEGNDPQGT-ASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIKPT 186 (387)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhCC--CcEEEEeCCCCCCC-cccccCcCccccccccccHHHHHhCCCcchHhheecC
Confidence 47899999999999999999999999 99999996 99985 56777765322111 12233444
Q ss_pred cccCceeecCCCCcccchhhhhh----c---hHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEE
Q psy14655 65 VNYGVKCLSMGNLITEKSAAIWR----G---LMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIII 137 (261)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~----~---~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv 137 (261)
..++++++|++..+......... . ......|++.++.+. ++||||||||||+++..+.+++.+ ||.+|+|
T Consensus 187 ~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~nAL~A--Ad~vliP 263 (387)
T PHA02519 187 CWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTINVVCA--ADVIVVA 263 (387)
T ss_pred CCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHHHHHH--hCEEEEe
Confidence 56899999987655322111110 0 012245778888888 899999999999999999999887 9999999
Q ss_pred eCCCcchHHHHHHHHHHHHhC-------C-CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccc
Q psy14655 138 TIPDTMSLQVAQRGYTMFKKL-------N-IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHM 209 (261)
Q Consensus 138 ~~~~~~s~~~~~~~~~~l~~~-------~-~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 209 (261)
+.|+..++.++..+++.+... + .+.+.+++|+++.. .. ... ..+.+..++.||..+
T Consensus 264 v~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~------------~~--~~~--~~i~~~l~~~~g~~v 327 (387)
T PHA02519 264 TPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT------------VG--NQS--RWMEEQIRNTWGSMV 327 (387)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC------------Cc--hHH--HHHHHHHHHHhcccc
Confidence 999999998888766655321 1 23466899985421 00 000 112234566689999
Q ss_pred cccccCcchhhhhhhccccCCCCCCCCcchhhhhhh
Q psy14655 210 WNFLIPLCNLIIKIRNVAYGNSHGHGNTVHHHHVLN 245 (261)
Q Consensus 210 ~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~~~ 245 (261)
+.+.|| .+.++.+|...++++++++...
T Consensus 328 l~~~I~--------~s~~i~~a~~~~~ti~e~~~~~ 355 (387)
T PHA02519 328 LRQVVR--------VTDEVGKGQIKMRTVFEQAANQ 355 (387)
T ss_pred ccccCc--------CcchHhhchhcCCChhhCcccc
Confidence 999999 9999999999999999876544
No 8
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=4.1e-32 Score=219.38 Aligned_cols=220 Identities=24% Similarity=0.261 Sum_probs=163.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCC--CC-----CcCCccc--cccccCcee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP--LL-----NKDNLMI--PLVNYGVKC 71 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~--~~-----~~~~~~~--~~~~~~l~~ 71 (261)
+|.|.||||||||+|+|||..|++.| ++|++||+|||+ .+...||++... ++ ....+.. -....++.+
T Consensus 5 ai~s~kGGvG~TTltAnLA~aL~~~G--~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~~ 81 (243)
T PF06564_consen 5 AIVSPKGGVGKTTLTANLAWALARLG--ESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVDF 81 (243)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCEE
Confidence 47899999999999999999999999 999999999995 788999987432 22 1122222 124579999
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
+|+|...................+.+.+..+. ...||+||+|+|++.+.....++.. ||.+++|+.|+..+...+.+
T Consensus 82 LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~--aD~vL~V~~~Da~s~~~L~q 159 (243)
T PF06564_consen 82 LPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQALAA--ADLVLVVVNPDAASHARLHQ 159 (243)
T ss_pred EcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHh--CCeEEEEeCCCHHHHHHHHH
Confidence 99998776443322222233456677777776 6789999999999999999988887 99999999999998755443
Q ss_pred HHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGN 230 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~ 230 (261)
. ... ....+|+|+++ +.+.+.++... ..++.+| ..++..|+ +++++.|
T Consensus 160 ---~--~l~-~~~~~liNq~~-------~~s~l~~D~~~----------~~~~~l~-~llp~~IH--------rDeAv~E 207 (243)
T PF06564_consen 160 ---R--ALP-AGHRFLINQYD-------PASQLQRDLLQ----------VWRQSLG-RLLPGVIH--------RDEAVAE 207 (243)
T ss_pred ---h--ccc-CCcEEEEeccC-------ccchHHHHHHH----------HHHHhhc-cccceeee--------cchHHHH
Confidence 1 111 13578999944 34433332221 2233344 45566788 9999999
Q ss_pred CCCCCCcchhhhhhhhccccccccCCC
Q psy14655 231 SHGHGNTVHHHHVLNLIGEEDQKSGPY 257 (261)
Q Consensus 231 a~~~g~~v~~~~~~~~~~~~~~~~~~~ 257 (261)
|...|.|+.+|++.++++++.+..++|
T Consensus 208 AlA~~~~v~~yaP~S~Aa~D~~~LA~W 234 (243)
T PF06564_consen 208 ALASGQPVGEYAPHSQAAEDIQTLANW 234 (243)
T ss_pred HHhcCCCccccCccCHHHHHHHHHHHH
Confidence 999999999999999999998876666
No 9
>PRK10037 cell division protein; Provisional
Probab=99.97 E-value=9e-32 Score=223.06 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=140.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC----------CcCCccccccccCce
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL----------NKDNLMIPLVNYGVK 70 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~ 70 (261)
+|+|.||||||||+|.|||.+||++| +|||+||+|+|+ +++.+||....... ...+.+.+. .++++
T Consensus 5 av~n~KGGvGKTT~a~nLA~~La~~G--~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 80 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSLQMLG--ENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQLD 80 (250)
T ss_pred EEecCCCCccHHHHHHHHHHHHHhcC--CcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccc-cCCeE
Confidence 48899999999999999999999999 999999999997 55666776432211 111122222 46899
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
++|++...................|.+.++.++ ..+||||||||||+.+.....++.+ ||.+++|+.|+..+.
T Consensus 81 iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~al~a--aD~vlvpv~~~~~~~---- 154 (250)
T PRK10037 81 LLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLSL--CDHSLAIVNVDANCH---- 154 (250)
T ss_pred EEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHHHHHh--CCEEEEEcCcCHHHH----
Confidence 999873322111111110111234666777664 1589999999999999988888887 999999999986653
Q ss_pred HHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccC
Q psy14655 150 RGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYG 229 (261)
Q Consensus 150 ~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~ 229 (261)
++..+......+.+++|+++. ..+....+.+ .+ ...+.+++++.|| +++++.
T Consensus 155 --i~~~~~~~~~~~~i~~n~~~~-----------~~~~~~~~~~-----~~--~~~~~~~l~~~I~--------~~~~~~ 206 (250)
T PRK10037 155 --IRLHQQALPAGAHILINDLRI-----------GSQLQDDLYQ-----LW--LQSQRRLLPMLIH--------RDEAMA 206 (250)
T ss_pred --HhhhccccCCCeEEEEecCCc-----------ccHHHHHHHH-----HH--HHhcccccCcccc--------CchhHH
Confidence 333332212235678887431 1111111111 01 1114567777899 999999
Q ss_pred CCCCCCCcchhhhhhhhccccc
Q psy14655 230 NSHGHGNTVHHHHVLNLIGEED 251 (261)
Q Consensus 230 ~a~~~g~~v~~~~~~~~~~~~~ 251 (261)
+|...|+|++++.+.+.++++.
T Consensus 207 ~a~~~g~~v~~~~~~s~aa~~~ 228 (250)
T PRK10037 207 ECLAAKQPLGEYRSDSLAAEEI 228 (250)
T ss_pred HHHhcCCcchhcCCcCHHHHHH
Confidence 9999999999998777665553
No 10
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=1e-31 Score=222.43 Aligned_cols=218 Identities=20% Similarity=0.227 Sum_probs=153.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----------CCccccccccCce
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----------DNLMIPLVNYGVK 70 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~ 70 (261)
+|+|+|||+||||+|.|||..||++| +|||+||+|+|+ +++..++.+....... .+.+. ...++++
T Consensus 5 ~v~s~KGGvGKTt~a~nla~~la~~g--~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~ 80 (246)
T TIGR03371 5 AIVGVKGGVGKTTLTANLASALKLLG--EPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAY-RSSDGVL 80 (246)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHh-hcCCCeE
Confidence 47899999999999999999999999 999999999997 4667777654322110 11111 1346889
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
++|.+.......... .......+++.++.+....||||||||||+.+.....++.. ||.+++|+.|+..++..+.+
T Consensus 81 ~ip~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~l~~--ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 81 FLPFGDLSADEREAY--QAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQALAA--ADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred EecCCCCcHHHHHHH--hhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHHHHh--CCeEEEEeCCCHHHHHHHHH
Confidence 999765442221111 11123457788888863346999999999999988888887 99999999999999999984
Q ss_pred -HHHHHHhCCC-CeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhcccc
Q psy14655 151 -GYTMFKKLNI-PVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAY 228 (261)
Q Consensus 151 -~~~~l~~~~~-~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~ 228 (261)
+.+.+..... ..+++|+|+++. +... .. ...+...+.+|..++.+.|| ++..+
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~-------~~~~--------~~--~~~~~~~~~~~~~~~~~~I~--------~~~~~ 211 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDP-------ARQL--------SR--DVRAVLRQTLGSRLLPFVIH--------RDEAV 211 (246)
T ss_pred HHHHHhhcccccccceEEeeccCc-------chhh--------HH--HHHHHHHHHhcccccCCccc--------chhhH
Confidence 4445543322 247899999542 1111 11 12223344567767778899 99999
Q ss_pred CCCCCCCCcchhhhhhhhccccc
Q psy14655 229 GNSHGHGNTVHHHHVLNLIGEED 251 (261)
Q Consensus 229 ~~a~~~g~~v~~~~~~~~~~~~~ 251 (261)
.+|...|+|++++.+.+.+.+..
T Consensus 212 ~~a~~~g~pv~~~~~~s~~~~~~ 234 (246)
T TIGR03371 212 SEALARGTPVLNYAPHSQAAHDI 234 (246)
T ss_pred HHHHHcCCCccccCCcCHHHHHH
Confidence 99999999999887665555443
No 11
>CHL00175 minD septum-site determining protein; Validated
Probab=99.97 E-value=1e-30 Score=220.55 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=153.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----------CCcc-ccccccCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----------DNLM-IPLVNYGV 69 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~l 69 (261)
+|+|+||||||||+|+|||.+|++.| ++|++||+|+|.++++.+++.+.....+. .+.+ .....+++
T Consensus 19 ~v~s~KGGvGKTt~a~nLA~~La~~g--~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~~~~~~l 96 (281)
T CHL00175 19 VITSGKGGVGKTTTTANLGMSIARLG--YRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRDKRWKNL 96 (281)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeecCCCCCe
Confidence 48999999999999999999999999 99999999999878888888864321111 1111 11234689
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccC-CCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWG-PCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+++|++...... . .....+.++++.++ . +||||||||||+.+.....++.. ||.+++|+.|+..++.++
T Consensus 97 ~~l~~~~~~~~~-~------~~~~~l~~~l~~l~-~~~yD~VIiDtpp~~~~~~~~~l~~--aD~viiV~~p~~~si~~~ 166 (281)
T CHL00175 97 SLLAISKNRQRY-N------VTRKNMNMLVDSLK-NRGYDYILIDCPAGIDVGFINAIAP--AQEAIVVTTPEITAIRDA 166 (281)
T ss_pred EEEeCCCchhhc-c------CCHHHHHHHHHHHH-hCCCCEEEEeCCCCCCHHHHHHHHh--cCeeEEEcCCChHHHHHH
Confidence 999976543211 0 11234778888887 6 89999999999998888777776 999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhcccc
Q psy14655 149 QRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAY 228 (261)
Q Consensus 149 ~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~ 228 (261)
.++++.+...+...+++|+|++... ... ....+.. +...+.+|.+++ ..|| ++..+
T Consensus 167 ~~~~~~l~~~~~~~~~lvvN~~~~~-------~~~---~~~~~~~-----~~l~~~~~~~~~-~~Ip--------~d~~v 222 (281)
T CHL00175 167 DRVAGLLEANGIYNVKLLVNRVRPD-------MIQ---ANDMMSV-----RDVQEMLGIPLL-GAIP--------EDENV 222 (281)
T ss_pred HHHHHHHHHcCCCceEEEEeccChh-------hhh---hhccccH-----HHHHHHhCCCeE-EEcc--------CCHhH
Confidence 9999999988777789999995421 000 0000001 112333566655 4699 88899
Q ss_pred CCCCCCCCcchhhhh
Q psy14655 229 GNSHGHGNTVHHHHV 243 (261)
Q Consensus 229 ~~a~~~g~~v~~~~~ 243 (261)
.+|...|+|++++.+
T Consensus 223 ~~a~~~g~~~~~~~~ 237 (281)
T CHL00175 223 IISTNRGEPLVLNKK 237 (281)
T ss_pred HHHHHcCCceEeCCC
Confidence 999999999987654
No 12
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.97 E-value=8.6e-31 Score=218.62 Aligned_cols=206 Identities=23% Similarity=0.287 Sum_probs=149.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----------CCcccc-ccccCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----------DNLMIP-LVNYGV 69 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~l 69 (261)
+|+|+||||||||+|+|||..|++.| +||++||+|+|.++++.+++.+....... .+.+.. ...+++
T Consensus 5 ~v~s~kGGvGKTt~a~~lA~~la~~g--~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 82 (261)
T TIGR01968 5 VITSGKGGVGKTTTTANLGTALARLG--KKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLKNL 82 (261)
T ss_pred EEecCCCCccHHHHHHHHHHHHHHcC--CeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCCCe
Confidence 47899999999999999999999999 99999999999778888888764321110 011111 124588
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
+++|.+..... . ......+.+.++.++ ++||||||||||+.+.....++.. +|.+++|+.|+..++.++.
T Consensus 83 ~~l~~~~~~~~-~------~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~l~~--aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 83 YLLPASQTRDK-D------AVTPEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNAVAP--ADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred EEEeCCCchhh-h------hCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHHHHh--CCeEEEEcCCCcHHHHHHH
Confidence 89987654321 0 112235778888888 899999999999998887777776 9999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccC
Q psy14655 150 RGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYG 229 (261)
Q Consensus 150 ~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~ 229 (261)
++++.+...+....++++|++... .....+. .. .. ...+.+|.+++ ..|| ++..+.
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~-------~~~~~~~---~~----~~-~~~~~~~~~~~-~~Ip--------~~~~~~ 208 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPE-------MVKKGDM---LS----VD-DVLEILSIPLI-GVIP--------EDEAII 208 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCch-------hcccccc---cC----HH-HHHHHhCCcee-EEcc--------CCHHHH
Confidence 999999887766789999996431 0000000 00 00 11223455544 4699 888999
Q ss_pred CCCCCCCcchhhh
Q psy14655 230 NSHGHGNTVHHHH 242 (261)
Q Consensus 230 ~a~~~g~~v~~~~ 242 (261)
+|...|++++++.
T Consensus 209 ~a~~~g~~v~~~~ 221 (261)
T TIGR01968 209 VSTNKGEPVVLND 221 (261)
T ss_pred HHHhcCCCeecCC
Confidence 9999999998654
No 13
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=6.8e-31 Score=220.60 Aligned_cols=214 Identities=20% Similarity=0.189 Sum_probs=144.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC------------CcCCccccccccC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL------------NKDNLMIPLVNYG 68 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 68 (261)
+|+ +||||||||+|.|||.+||++| +|||+||+|+|++++..++|......+ ...+.+.+. ..+
T Consensus 5 av~-gKGGVGKTT~a~nLA~~La~~G--~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~-~~~ 80 (273)
T PRK13232 5 AIY-GKGGIGKSTTTQNLTAALSTMG--NKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG-FGD 80 (273)
T ss_pred EEE-CCCCCcHHHHHHHHHHHHHhhC--CCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC-CCC
Confidence 367 8999999999999999999999 999999999999888777664322211 111122232 468
Q ss_pred ceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
++++|++..... ......+......+.+.+..+. ++||||||||+++.... ....+....||.+++|+.|+..++.+
T Consensus 81 i~~i~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~ 158 (273)
T PRK13232 81 IKCVESGGPEPG-VGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYA 158 (273)
T ss_pred eEEEeCCCCCCC-CCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHH
Confidence 999998653321 1111222222234667777777 88999999998765311 11111111299999999999999999
Q ss_pred HHHHHHHHHh---CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 148 AQRGYTMFKK---LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 148 ~~~~~~~l~~---~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
+..+++.++. .+.++.|+|+|+... ....... +...+.+|..++. .|| +
T Consensus 159 ~~~~~k~l~~~~~~~l~~~GiV~n~~~~-------------~~~~~~~------e~l~~~~~~~vl~-~Ip--------~ 210 (273)
T PRK13232 159 ANNICKGLAKFAKGGARLGGIICNSRNV-------------DGERELL------EAFAKKLGSQLIH-FVP--------R 210 (273)
T ss_pred HHHHHHHHHHHhCCCCceeEEEEeCCCC-------------CccHHHH------HHHHHHhCCCeEE-ECC--------C
Confidence 9988887775 356788999997321 0001111 1123346665554 799 9
Q ss_pred ccccCCCCCCCCcchhhhhhhhcc
Q psy14655 225 NVAYGNSHGHGNTVHHHHVLNLIG 248 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~~~~~~~~ 248 (261)
+..+.+|...|+|++++++.+..+
T Consensus 211 ~~~v~~A~~~g~pv~~~~p~s~~a 234 (273)
T PRK13232 211 DNIVQRAEINRKTVIDFDPESNQA 234 (273)
T ss_pred CHHHHHHHHcCCCeEEeCCCChHH
Confidence 999999999999998876554443
No 14
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.1e-30 Score=217.83 Aligned_cols=217 Identities=24% Similarity=0.293 Sum_probs=153.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCcccccCCCCCCCC------C---cC-Cccccc-cccC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGPSIPILMNLPDTPLL------N---KD-NLMIPL-VNYG 68 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~------~---~~-~~~~~~-~~~~ 68 (261)
+|+|.||||||||+|.|||.+|| ..| +|||+||+|||+ +++.+++.+..... . .. ...... ..++
T Consensus 6 ~v~n~KGGvGKTT~a~nLa~~La~~~~--~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (259)
T COG1192 6 AVANQKGGVGKTTTAVNLAAALAKRGG--KKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIEG 82 (259)
T ss_pred EEEecCCCccHHHHHHHHHHHHHHhcC--CcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhcccCCCC
Confidence 47899999999999999999999 666 999999999996 56677777654000 0 00 111111 4578
Q ss_pred ceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
++++|++...................++..+..+. ++||||||||||+.+....+++.+ +|.+++|+.|+..++.++
T Consensus 83 ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~~l~~nal~a--sd~vlIP~~~~~~~~~~~ 159 (259)
T COG1192 83 LDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLGVLTLNALAA--ADHVLIPVQPEFLDLEGL 159 (259)
T ss_pred ceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchhHHHHHHHHH--cCeeEEecCchHHHHHHH
Confidence 89999876664311111112233445566666666 799999999999999888888887 999999999999999999
Q ss_pred HHHHHHHHhCC------CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhh
Q psy14655 149 QRGYTMFKKLN------IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIK 222 (261)
Q Consensus 149 ~~~~~~l~~~~------~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~ 222 (261)
..+++.+.... ....++++|+... +..... ...+...+.++..++.+.||
T Consensus 160 ~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~----------~~~~~~~~~~~~~~~~~~i~------- 215 (259)
T COG1192 160 EQLLNTLEDLLKLRRNKLIVVGILITRFDS-------RTKLAD----------EVLQELKQLLGDPVLKTKIP------- 215 (259)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEeeceEcC-------CcchHH----------HHHHHHHHHhccccccccCc-------
Confidence 99877766531 2567888898442 111111 11112344456777788899
Q ss_pred hhccccCCCCCCCCcchhhhhhhhcc
Q psy14655 223 IRNVAYGNSHGHGNTVHHHHVLNLIG 248 (261)
Q Consensus 223 ~~~~~~~~a~~~g~~v~~~~~~~~~~ 248 (261)
++.++.++...|.++..+++....+
T Consensus 216 -~~~~~~~a~~~g~~~~~~~~~~~~~ 240 (259)
T COG1192 216 -RRVAYREAAAEGKPLYEYDPKSKAA 240 (259)
T ss_pred -ccccHHhHHHcCCCceecCCcchHH
Confidence 9999999999999999887664333
No 15
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.3e-31 Score=206.50 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=154.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCC-----------ccccccccCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDN-----------LMIPLVNYGV 69 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l 69 (261)
+|+|+||||||||+++|++..||+.| +||++||+|.---+++..+|.+..--+...+ .+.....+++
T Consensus 6 VvTSGKGGVGKTTttAnig~aLA~~G--kKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL 83 (272)
T COG2894 6 VVTSGKGGVGKTTTTANIGTALAQLG--KKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENL 83 (272)
T ss_pred EEecCCCCcCccchhHHHHHHHHHcC--CeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCce
Confidence 47999999999999999999999999 9999999999888899999988653332222 2233456788
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
.++|+....... ....+.+..++++++..+|||||||||+|++.-...++.. ||..++|+.|+..|++++-
T Consensus 84 ~lLPAsQtrdKd-------alt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~--Ad~AiVVtnPEvSsVRDsD 154 (272)
T COG2894 84 FLLPASQTRDKD-------ALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYF--ADEAIVVTNPEVSSVRDSD 154 (272)
T ss_pred EecccccccCcc-------cCCHHHHHHHHHHHHhcCCCEEEecCcchHHHHHHhhhhc--cceEEEEcCCCccccccch
Confidence 899876655321 2234567788888875789999999999999888888776 9999999999999999999
Q ss_pred HHHHHHHhCC----C---CeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhh
Q psy14655 150 RGYTMFKKLN----I---PVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIK 222 (261)
Q Consensus 150 ~~~~~l~~~~----~---~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~ 222 (261)
+.+..++..+ . +...+++||+++. . ....+.++-++++..+...++| +||
T Consensus 155 RiiGlLesk~~rae~~~~~~~~llvnR~~p~-------~---v~~GeMlsv~Dv~~iL~i~liG------iiP------- 211 (272)
T COG2894 155 RIIGLLESKSRRAEIGEEPKEHLLLNRYRPE-------M---VKRGEMLSVEDVLEILSIPLIG------VIP------- 211 (272)
T ss_pred hheeehhcccchhhcCCcccceEEEEccCHH-------H---hccCCcccHHHHHHHhCCceEE------eec-------
Confidence 9999887654 1 2378999996641 0 0222333333333333334444 499
Q ss_pred hhccccCCCCCCCCcchh
Q psy14655 223 IRNVAYGNSHGHGNTVHH 240 (261)
Q Consensus 223 ~~~~~~~~a~~~g~~v~~ 240 (261)
.+..+-.|.+.|.|+.-
T Consensus 212 -ed~~Vi~asN~GePv~l 228 (272)
T COG2894 212 -EDQDVLRASNKGEPVIL 228 (272)
T ss_pred -CchhhheecCCCCCeEe
Confidence 99999999999999863
No 16
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.97 E-value=9.3e-30 Score=214.48 Aligned_cols=205 Identities=20% Similarity=0.146 Sum_probs=138.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCC-------------CCcCCccccccccCc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPL-------------LNKDNLMIPLVNYGV 69 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l 69 (261)
+++||||||||+|.|||.+||++| +|||+||+|||++.+..+.+...... ....+.+.+ ..+++
T Consensus 5 ~~gKGGVGKTTta~nLA~~La~~G--~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~-~~~~l 81 (290)
T CHL00072 5 VYGKGGIGKSTTSCNISIALARRG--KKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYK-GYGGV 81 (290)
T ss_pred EECCCCCcHHHHHHHHHHHHHHCC--CeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEe-CCCCe
Confidence 356999999999999999999999 99999999999876544434321110 011222322 25689
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+++|++............ ......+.+.+..+ ++||||||||+++... ...+++.. ||.+++|+.|+..++.++
T Consensus 82 ~lip~~~~~~~~~~~~~~-~~~~~~ll~~l~~~--~~yD~IiIDt~~~l~~~a~~aal~~--AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 82 DCVEAGGPPAGAGCGGYV-VGETVKLLKELNAF--YEYDIILFDVLGDVVCGGFAAPLNY--ADYCIIITDNGFDALFAA 156 (290)
T ss_pred EEEeCCCCCCccchhhcc-cHHHHHHHHHhhcc--ccCCEEEEecCCcceechhhhhhhc--CCEEEEEecCCHHHHHHH
Confidence 999988765322110000 01111122223322 4799999999887643 23344555 999999999999999999
Q ss_pred HHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 149 QRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 149 ~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
.++++.++.. +++..|+|+||++. + ..+.+ ..+.+|.+++. .|| +
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~-------~--------~~~~~-------~~~~~~~~vl~-~Ip--------~ 205 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSK-------R--------DLIDK-------YVEACPMPVLE-VLP--------L 205 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCc-------h--------hHHHH-------HHHHcCCceEE-ECC--------C
Confidence 9998877654 45688999998531 0 01111 12336777777 799 9
Q ss_pred ccccCCCCCCCCcchhhhhhhh
Q psy14655 225 NVAYGNSHGHGNTVHHHHVLNL 246 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~~~~~~ 246 (261)
+..+.+|...|+|++++++.+.
T Consensus 206 ~~~v~~A~~~g~pv~~~~p~s~ 227 (290)
T CHL00072 206 IEDIRVSRVKGKTLFEMVESEP 227 (290)
T ss_pred ChHHHHHHhCCCceEEeCCCCc
Confidence 9999999999999998877544
No 17
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=4.5e-31 Score=222.01 Aligned_cols=211 Identities=18% Similarity=0.169 Sum_probs=140.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCcccccCCCCCCCCCc-----------CCccccccccC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGPSIPILMNLPDTPLLNK-----------DNLMIPLVNYG 68 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 68 (261)
+|+ +||||||||+|.|||.+||+ .| +|||+||+|||++++..++|.....++.+ .+.+.....++
T Consensus 6 av~-~KGGVGKTT~a~nLA~~La~~~G--~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (275)
T PRK13233 6 AIY-GKGGIGKSTTTQNTAAAMAYFHD--KKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTGFKD 82 (275)
T ss_pred EEE-cCCCCcHHHHHHHHHHHHHHhcC--CeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeCCCC
Confidence 366 79999999999999999997 59 99999999999987655566543322110 11122233578
Q ss_pred ceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhh----cCCCeEEEEeCCCcch
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQN----LFIDTAIIITIPDTMS 144 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~----~~ad~viiv~~~~~~s 144 (261)
++++|++...... ............+.+.++.+. ++||||||||++.. +.+++.. ..||++++|++|+..+
T Consensus 83 l~~ipa~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~---~~~al~~~~~~~aad~viIp~~p~~~s 157 (275)
T PRK13233 83 IRCVESGGPEPGV-GCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDV---VCGGFAMPIRDGKAQEVYIVASGEMMA 157 (275)
T ss_pred cEEEECCCCCCCC-CCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCce---eeccccccchhccCceEEEeccccHHH
Confidence 9999988654321 111111111122556666676 88999999995432 2223220 1299999999999999
Q ss_pred HHHHHHHHHHHH----hCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhh
Q psy14655 145 LQVAQRGYTMFK----KLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLI 220 (261)
Q Consensus 145 ~~~~~~~~~~l~----~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~ 220 (261)
+.++.++++.+. +.++++.|+|+|+... ....... +...+.+|..++. .||
T Consensus 158 l~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-------------~~~~~~~------e~l~~~~~~~~l~-~Ip----- 212 (275)
T PRK13233 158 IYAANNICKGLVKYAEQSGVRLGGIICNSRNV-------------DGELELL------EEFTDAIGTQMIH-FVP----- 212 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC-------------CcHHHHH------HHHHHHcCCceee-ecC-----
Confidence 999999877663 4567789999997320 0111111 1123346666664 799
Q ss_pred hhhhccccCCCCCCCCcchhhhhhhhc
Q psy14655 221 IKIRNVAYGNSHGHGNTVHHHHVLNLI 247 (261)
Q Consensus 221 ~~~~~~~~~~a~~~g~~v~~~~~~~~~ 247 (261)
++..+.+|...|+|++++++.+.+
T Consensus 213 ---~~~~v~~A~~~g~pv~~~~~~s~~ 236 (275)
T PRK13233 213 ---RDNIVQKAEFNKKTVVEFDPDCNQ 236 (275)
T ss_pred ---cchHHHHHHHcCCCEEEECCCCHH
Confidence 999999999999999987654433
No 18
>PHA02518 ParA-like protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=208.60 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=135.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|.||||||||+|+|||.+|+++| ++|++||+|+|++.. .|++...... ..+|....
T Consensus 4 ~v~~~KGGvGKTT~a~~la~~la~~g--~~vlliD~D~q~~~~-~~~~~~~~~~---------------~~i~~~~~--- 62 (211)
T PHA02518 4 AVLNQKGGAGKTTVATNLASWLHADG--HKVLLVDLDPQGSST-DWAEAREEGE---------------PLIPVVRM--- 62 (211)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCCChH-HHHHhcccCC---------------CCCchhhc---
Confidence 47899999999999999999999999 999999999998654 4443321100 11111100
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC--
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-- 158 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-- 158 (261)
...+.+.+..+. ..||||||||||+.+.....++.. ||.||+|+.|+..++..+.++++.+...
T Consensus 63 -----------~~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~l~~--aD~viip~~ps~~~~~~~~~~~~~~~~~~~ 128 (211)
T PHA02518 63 -----------GKSIRADLPKVA-SGYDYVVVDGAPQDSELARAALRI--ADMVLIPVQPSPFDIWAAPDLVELIKARQE 128 (211)
T ss_pred -----------cHHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHHHHH--CCEEEEEeCCChhhHHHHHHHHHHHHHHHh
Confidence 123555666676 899999999999999888888887 9999999999999999999888776642
Q ss_pred ---CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCC
Q psy14655 159 ---NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHG 235 (261)
Q Consensus 159 ---~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g 235 (261)
+.+..+++.|+... +... .. .+.+...+ +|.+++.+.+| ++..+.+|.+.|
T Consensus 129 ~~~~~~~~~iv~n~~~~-------~~~~--------~~--~~~~~l~~-~~~~~~~~~i~--------~~~~~~~a~~~g 182 (211)
T PHA02518 129 VTDGLPKFAFIISRAIK-------NTQL--------YR--EARKALAG-YGLPILRNGTT--------QRVAYADAAEAG 182 (211)
T ss_pred hCCCCceEEEEEeccCC-------cchH--------HH--HHHHHHHH-cCchhhhchhh--------hHHHHHHHHhcC
Confidence 45677888898431 1111 11 11122222 36566677777 888999999999
Q ss_pred Ccchhhhhhhhcccc
Q psy14655 236 NTVHHHHVLNLIGEE 250 (261)
Q Consensus 236 ~~v~~~~~~~~~~~~ 250 (261)
++++++.+.+.+.++
T Consensus 183 ~~v~~~~~~~~a~~~ 197 (211)
T PHA02518 183 GSVLELPEDDKAAEE 197 (211)
T ss_pred CceEecCCCchHHHH
Confidence 999988665444433
No 19
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.96 E-value=2.1e-30 Score=217.74 Aligned_cols=215 Identities=19% Similarity=0.137 Sum_probs=134.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC----------CcCCccccccccCce
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL----------NKDNLMIPLVNYGVK 70 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~ 70 (261)
+|+ +||||||||+|.|||.+||++| +|||+||+|||++++..+++......+ .....+.....++++
T Consensus 5 av~-~KGGVGKTT~~~nLA~~La~~G--~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~l~ 81 (274)
T PRK13235 5 AIY-GKGGIGKSTTTQNTVAGLAEMG--KKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGGTR 81 (274)
T ss_pred EEe-CCCCccHHHHHHHHHHHHHHCC--CcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCCCE
Confidence 356 6999999999999999999999 999999999999876665543322211 000112223356889
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCh-hHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTGD-THLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~yd~IiiD~~~~~~~-~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
++|++....... ...........+.+.++.+. .++||||||||++.... .....+...+||++++|+.|+..|+.++
T Consensus 82 ~ip~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g~ 160 (274)
T PRK13235 82 CTESGGPEPGVG-CAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYAA 160 (274)
T ss_pred EEeCCCCCCCCC-CCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHHH
Confidence 998764333110 00000000001222222221 26799999999765421 1111111012999999999999999999
Q ss_pred HHHHHHHHh----CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 149 QRGYTMFKK----LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 149 ~~~~~~l~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
..+++.+.. .++++.|+|+|+... ....... +...+.+|..++ +.|| +
T Consensus 161 ~~ll~~i~~~~~~~~l~i~giv~n~~~~-------------~~~~e~~------~~l~~~~~~~ll-~~Ip--------~ 212 (274)
T PRK13235 161 NNICKGILKYADAGGVRLGGLICNSRKV-------------DNEREMI------EELARKIGTQMI-HFVP--------R 212 (274)
T ss_pred HHHHHHHHHHhhcCCCceeEEEEecCCC-------------CchHHHH------HHHHHHcCCceE-EeCC--------C
Confidence 998877654 356677999996220 0111111 112334666565 4799 9
Q ss_pred ccccCCCCCCCCcchhhhhhhhc
Q psy14655 225 NVAYGNSHGHGNTVHHHHVLNLI 247 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~~~~~~~ 247 (261)
+..+.+|...|+|++++++.+.+
T Consensus 213 ~~~v~~A~~~g~pv~~~~p~s~~ 235 (274)
T PRK13235 213 DNFVQRAEINRKTVIEYDPTHPQ 235 (274)
T ss_pred CHHHHHHHhcCCcEEEECCCCHH
Confidence 99999999999999987754433
No 20
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.96 E-value=2.6e-29 Score=210.78 Aligned_cols=202 Identities=20% Similarity=0.241 Sum_probs=134.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC--------------CcCCcccccccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL--------------NKDNLMIPLVNY 67 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 67 (261)
|+ +||||||||+|.|||.+||++| +|||+||+|||++. ..+++......+ ...+.+. ...+
T Consensus 7 v~-~KGGVGKTT~~~nLA~~la~~G--~kVLliD~Dpq~~~-t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~-~~~~ 81 (270)
T PRK13185 7 VY-GKGGIGKSTTSSNLSAAFAKLG--KKVLQIGCDPKHDS-TFTLTGKLVPTVIDILEEVDFHSEELRPEDFVY-EGYN 81 (270)
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHCC--CeEEEEeccCCcch-hhhhcCCCCCcHHHHHHhccccccCCCHHHhee-eCCC
Confidence 55 6999999999999999999999 99999999999865 445543222111 1111222 2246
Q ss_pred CceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 68 GVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
|++++|++...................++. + .+. ++||||||||+++... ....++.. ||.+++|+.|+..++.
T Consensus 82 ~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~-~~yD~viIDt~g~~~~~~~~~~l~~--AD~viip~~~~~~sl~ 156 (270)
T PRK13185 82 GVDCVEAGGPPAGTGCGGYVVGETVKLLKE-H-HLL-DDYDVILFDVLGDVVCGGFAAPLQY--ADYALIVTANDFDSIF 156 (270)
T ss_pred CcEEEECCCCCCCCCccchhHHHHHHHHHh-c-Ccc-ccCCEEEEecCCCcccCcccchhhh--CcEEEEEecCchhhHH
Confidence 999999887543211100000111112222 1 234 7899999999876642 22334545 9999999999999999
Q ss_pred HHHHHHHHHHh----CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhh
Q psy14655 147 VAQRGYTMFKK----LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIK 222 (261)
Q Consensus 147 ~~~~~~~~l~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~ 222 (261)
++.++++.++. .+++..|+|+|+++. ... .+++ .+.+|..++. .||
T Consensus 157 ~~~~~~~~i~~~~~~~~l~i~giv~N~~~~---------------~~~------~~~~-~~~~g~~vl~-~Ip------- 206 (270)
T PRK13185 157 AANRIAAAIQAKAKNYKVRLAGVIANRSAG---------------TDL------IDKF-NEAVGLKVLA-HVP------- 206 (270)
T ss_pred HHHHHHHHHHhhhhccCCCceEEEEeccCh---------------HHH------HHHH-HHHcCCCEEE-ECC-------
Confidence 99998887653 456678999998431 011 1111 2235666665 589
Q ss_pred hhccccCCCCCCCCcchhhhhh
Q psy14655 223 IRNVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 223 ~~~~~~~~a~~~g~~v~~~~~~ 244 (261)
++..+.+|...|+|++++.+.
T Consensus 207 -~~~~i~~A~~~G~pv~~~~~~ 227 (270)
T PRK13185 207 -DLDAIRRSRLKGKTLFEMEET 227 (270)
T ss_pred -CCcccChHHHcCCcHhhhCcC
Confidence 899999999999999987663
No 21
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.96 E-value=3.9e-29 Score=209.34 Aligned_cols=204 Identities=19% Similarity=0.201 Sum_probs=137.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC--------------CcCCcccccccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL--------------NKDNLMIPLVNY 67 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 67 (261)
|+ +||||||||+|+|||.+||++| +|||+||+|||++. ...++.....++ ...+.+. ...+
T Consensus 5 v~-gKGGvGKTT~a~nLA~~la~~G--~rvlliD~Dpq~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~-~~~~ 79 (267)
T cd02032 5 VY-GKGGIGKSTTSSNLSVALAKRG--KKVLQIGCDPKHDS-TFTLTGFLIPTVIDILEEVDFHYEELWPEDVIY-EGYG 79 (267)
T ss_pred Ee-cCCCCCHHHHHHHHHHHHHHCC--CcEEEEecCCCCCc-ceeccCCCCCCHHHHHHhccccccCCChhheEE-ECCC
Confidence 44 6999999999999999999999 99999999999754 444543221111 1122232 2346
Q ss_pred CceeecCCCCcccch-hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchH
Q psy14655 68 GVKCLSMGNLITEKS-AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSL 145 (261)
Q Consensus 68 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~ 145 (261)
+++++|++....... ..... ......+++ +. +. .+||||||||+++.... ...++.. ||.+++|+.|+..++
T Consensus 80 ~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~-~~yD~vIIDt~g~~~~~~~~~al~~--aD~vlip~~p~~~~l 153 (267)
T cd02032 80 GVDCVEAGGPPAGAGCGGYVV-GETVKLLKE-LN-LF-EEYDVILFDVLGDVVCGGFAAPLNY--ADYALIVTDNDFDSI 153 (267)
T ss_pred CcEEEEcCCCCCCccccchHH-HHHHHHHHH-cc-cc-ccCCEEEEeCCCCcccccchhhhhh--cCEEEEEecCCcccH
Confidence 899999876443211 00001 111122333 21 34 68999999998876533 3445555 999999999999999
Q ss_pred HHHHHHHHHHHh----CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhh
Q psy14655 146 QVAQRGYTMFKK----LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLII 221 (261)
Q Consensus 146 ~~~~~~~~~l~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~ 221 (261)
.++.++++.++. .+++..++|+||++. ... .++. .+.+|.+++. .||
T Consensus 154 ~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~---------------~~~------i~~~-~~~~~~~vl~-~Ip------ 204 (267)
T cd02032 154 FAANRIAAAVREKAKTYKVRLAGLIANRTDK---------------TDL------IDKF-VEAVGMPVLA-VLP------ 204 (267)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEeCCCH---------------HHH------HHHH-HHhCCCCEEE-Eec------
Confidence 999998877653 356678999999541 001 1111 2235766776 499
Q ss_pred hhhccccCCCCCCCCcchhhhhhhhc
Q psy14655 222 KIRNVAYGNSHGHGNTVHHHHVLNLI 247 (261)
Q Consensus 222 ~~~~~~~~~a~~~g~~v~~~~~~~~~ 247 (261)
++..+.+|...|+|++++++...+
T Consensus 205 --~~~~v~~A~~~G~~v~e~~~~~~~ 228 (267)
T cd02032 205 --LIEDIRRSRVKGKTLFEMDESDEE 228 (267)
T ss_pred --CCccccHHHHcCCCHHHhCccccc
Confidence 999999999999999998765543
No 22
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=1.3e-28 Score=192.36 Aligned_cols=144 Identities=46% Similarity=0.797 Sum_probs=115.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|+|||+||||+|.|||.++|+.| +||++||+|+|++++.++...
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g--~~vllvD~D~q~~~~~~~~~~------------------------------- 49 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLG--YKVGLLDADIYGPSIPKMWRG------------------------------- 49 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcC--CcEEEEeCCCCCCCchHHHhC-------------------------------
Confidence 47899999999999999999999999 999999999998765433100
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCC
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNI 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 160 (261)
......++..++.+...+|||||+||||+.+...........+|.+++|+.|+..++.++.++++.+++.+.
T Consensus 50 --------~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 50 --------PMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred --------cchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 001123555555553378999999999998776554442122999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCCCCccccccc
Q psy14655 161 PVAGLVMNMNSVLCPSCNHMFELYE 185 (261)
Q Consensus 161 ~~~giv~N~~~~~~~~~~~~~~~~~ 185 (261)
+..|+|+||+...++.|.++...+.
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~ 146 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFG 146 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccC
Confidence 9999999999887777777766654
No 23
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.96 E-value=3.5e-29 Score=197.31 Aligned_cols=174 Identities=26% Similarity=0.385 Sum_probs=132.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|+|||+||||+|+|||..|+++| ++|++||+|+|+++++.+++.+..... +
T Consensus 3 ~v~~~kgG~GKtt~a~~la~~l~~~g--~~vllvD~D~~~~~~~~~~~~~~~~~~------------~------------ 56 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQLG--YKVVLIDADLGLRNLDLILGLENRVVY------------T------------ 56 (179)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCCchhhccccccCCc------------c------------
Confidence 47899999999999999999999999 999999999998787777665432110 0
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCC
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNI 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 160 (261)
+.+. +. . |||||||||+.+......+.. ||.+++|+.|+..++..+.++++.++..+.
T Consensus 57 --------------~~~~---~~-~--d~viiD~p~~~~~~~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDV---LA-G--DYILIDSPAGIERGFITAIAP--ADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhc---cc-C--CEEEEECCCCCcHHHHHHHHh--CCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 0011 01 1 999999999998887777776 999999999999999999999999998888
Q ss_pred CeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCCcchh
Q psy14655 161 PVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHH 240 (261)
Q Consensus 161 ~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~ 240 (261)
+..++|+|+++.. ..... .. .+...+.+|.+++ ..|| ++..+.++...|+++++
T Consensus 115 ~~~~iv~N~~~~~-------~~~~~----~~------~~~~~~~~~~~v~-~~Ip--------~~~~~~~a~~~G~~v~~ 168 (179)
T cd02036 115 KVVGVIVNRVRPD-------MVEGG----DM------VEDIEEILGVPLL-GVIP--------EDPAVIRATNRGEPVVL 168 (179)
T ss_pred ceEEEEEeCCccc-------ccchh----hH------HHHHHHHhCCCEE-EEec--------CCHHHHHHHhcCCceEe
Confidence 8899999996531 11111 10 1112333566655 4699 88899999999999998
Q ss_pred hhhhhhcc
Q psy14655 241 HHVLNLIG 248 (261)
Q Consensus 241 ~~~~~~~~ 248 (261)
+.+...++
T Consensus 169 ~~~~~~~~ 176 (179)
T cd02036 169 NKPKSPAA 176 (179)
T ss_pred cCCCChhh
Confidence 87665543
No 24
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.96 E-value=1.5e-29 Score=212.84 Aligned_cols=210 Identities=20% Similarity=0.201 Sum_probs=134.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC------------CcCCccccccccCcee
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL------------NKDNLMIPLVNYGVKC 71 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~ 71 (261)
++||||||||+|.|||.+||++| +|||+||+|+|++++..+++......+ ...+.+. ....++++
T Consensus 6 ~gKGGVGKTT~a~nLA~~La~~G--~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~-~~~~~l~~ 82 (275)
T TIGR01287 6 YGKGGIGKSTTTQNIAAALAEMG--KKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIK-EGFGGIRC 82 (275)
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeee-eCCCCEEE
Confidence 46999999999999999999999 999999999999876555453332221 1112221 23568999
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHH--HHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THL--SLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~--~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+|++...... ............+.+.+..+. ++||||||||++.... ... ....+ ||.+|+|+.|+..++.++
T Consensus 83 i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~a--AD~viip~~p~~~sl~~~ 158 (275)
T TIGR01287 83 VESGGPEPGV-GCAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGGFAMPIREGK--AQEIYIVTSGEMMALYAA 158 (275)
T ss_pred EeCCCCCccC-CCccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecceeecccccc--ccEEEEEecchHHHHHHH
Confidence 9987544321 111111111111233345566 7899999999764421 110 11123 999999999999999999
Q ss_pred HHHHHHHHh----CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 149 QRGYTMFKK----LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 149 ~~~~~~l~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
.++++.+.. .+.+..++|.|+.+. ....... + ...+.+|..++. .|| +
T Consensus 159 ~~l~~~i~~~~~~~~~~~~giv~n~~~~-------------~~~~~~~-----e-~l~~~~~~~vl~-~Ip--------~ 210 (275)
T TIGR01287 159 NNICKGILKYAKSGGVRLGGLICNSRNV-------------DDEKELI-----D-EFAKKLGTQLIH-FVP--------R 210 (275)
T ss_pred HHHHHHHHHHHhcCCCeeeEEEEcCCCC-------------chHHHHH-----H-HHHHHhCCceEE-ECC--------C
Confidence 888765543 356677888886210 0111111 1 122335655554 799 9
Q ss_pred ccccCCCCCCCCcchhhhhhhhcc
Q psy14655 225 NVAYGNSHGHGNTVHHHHVLNLIG 248 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~~~~~~~~ 248 (261)
+..+.+|...|+|++++.+...++
T Consensus 211 ~~~v~~A~~~g~pv~~~~p~s~~a 234 (275)
T TIGR01287 211 SNIVQKAEIRKMTVIEYDPESEQA 234 (275)
T ss_pred ChHHHHHHHcCCceEEeCCCCHHH
Confidence 999999999999999887655443
No 25
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.96 E-value=4.9e-29 Score=208.90 Aligned_cols=201 Identities=18% Similarity=0.229 Sum_probs=134.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC--------------CcCCccccccccCc
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL--------------NKDNLMIPLVNYGV 69 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l 69 (261)
++||||||||+|+|||.+||++| +|||+||+|+|++.+ .+++.....++ ...+.+. ...+++
T Consensus 6 ~gKGGVGKTT~~~nLA~~La~~g--~rVLliD~D~q~~~~-~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~-~~~~~l 81 (268)
T TIGR01281 6 YGKGGIGKSTTSSNLSVAFAKLG--KRVLQIGCDPKHDST-FTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIY-TGYGGV 81 (268)
T ss_pred EcCCcCcHHHHHHHHHHHHHhCC--CeEEEEecCcccccc-ceecCCCCCcHHHHHHhccccccCCCHHHeeE-eCCCCe
Confidence 37999999999999999999999 999999999998654 44432221111 1112222 234689
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+++|++...................+++ + .+. ++||||||||+++... ....++.. ||.+++|+.|+..++.++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~-~~yD~ViID~~~~~~~~~~~~~l~a--AD~vlip~~~~~~sl~~~ 156 (268)
T TIGR01281 82 DCVEAGGPPAGSGCGGYVVGETVKLLKE-H-HIL-DDYDVILFDVLGDVVCGGFATPLQY--ADYALVVAANDFDALFAA 156 (268)
T ss_pred EEEecCCCCCCCcccceehhhhHHHhhh-c-ccc-ccCCEEEEecCCccccCccccchhh--cCEEEEEecCchhHHHHH
Confidence 9999876543211000000111122222 1 234 6899999999876642 22234444 999999999999999999
Q ss_pred HHHHHHHHh----CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 149 QRGYTMFKK----LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 149 ~~~~~~l~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
.++++.+.. .+++..++|+||++. + . ..++ ..+.+|.+++. .|| +
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gIV~N~~~~-------~---------~-----~~~~-~~~~~~~~vl~-~I~--------~ 205 (268)
T TIGR01281 157 NRIAASVQEKAKNYDVRLAGIIGNRSDA-------T---------D-----LIER-FNERVGMPVLG-VVP--------D 205 (268)
T ss_pred HHHHHHHHHHhhcCCCceEEEEEeCCCh-------H---------H-----HHHH-HHHHcCCCEEE-EcC--------C
Confidence 998887764 356788999999542 1 1 1111 12335766765 589 8
Q ss_pred ccccCCCCCCCCcchhhhhh
Q psy14655 225 NVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~~~~ 244 (261)
+..+.+|...|+|++++.+.
T Consensus 206 ~~~v~~A~~~G~pV~~~~~~ 225 (268)
T TIGR01281 206 LEVIRRSRVKGKTLFEMEES 225 (268)
T ss_pred ChHHHHHHHCCCCHHHhCcc
Confidence 99999999999999988653
No 26
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.96 E-value=7.6e-29 Score=207.97 Aligned_cols=204 Identities=18% Similarity=0.226 Sum_probs=144.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----------CCcccc-ccccCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----------DNLMIP-LVNYGV 69 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~~~l 69 (261)
+|+|+||||||||+|+|||.+||++| ++|++||+|+|.++++.++|.+....... .+.+.. ....++
T Consensus 6 av~s~KGGvGKTt~a~nlA~~la~~g--~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (270)
T PRK10818 6 VVTSGKGGVGKTTSSAAIATGLAQKG--KKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENL 83 (270)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCcCCE
Confidence 48899999999999999999999999 99999999999878888888764321111 111111 135689
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
+++|.+..... .. .....+.++++.++..+||||||||||+.+.....++.. +|.+++|+.|+..++.++.
T Consensus 84 ~~lp~~~~~~~-~~------~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~l~~--ad~vivv~~p~~~sl~~~~ 154 (270)
T PRK10818 84 YILPASQTRDK-DA------LTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYF--ADEAIITTNPEVSSVRDSD 154 (270)
T ss_pred EEecCCCCcch-hh------hCHHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHHHHh--CCeEEEEcCCCchHHHhHH
Confidence 99998754321 11 112345667777752489999999999999888888776 9999999999999999999
Q ss_pred HHHHHHHhC-------CCC-eEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhh
Q psy14655 150 RGYTMFKKL-------NIP-VAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLII 221 (261)
Q Consensus 150 ~~~~~l~~~-------~~~-~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~ 221 (261)
++++.+... ..+ ..++|+|++.. +..... ... ..++ ..+.+|..++ ..||
T Consensus 155 ~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~-------~~~~~~---~~~----~~~~-~~~~~g~~~~-~~Ip------ 212 (270)
T PRK10818 155 RILGILASKSRRAENGEEPIKEHLLLTRYNP-------GRVSRG---DML----SMED-VLEILRIKLV-GVIP------ 212 (270)
T ss_pred HHHHHHHHhhccccccccccceEEEEeccCH-------hhhhhc---ccc----cHHH-HHHHhCCcEE-EEec------
Confidence 999987632 112 25789998542 110000 000 1111 1233566554 5699
Q ss_pred hhhccccCCCCCCCCcch
Q psy14655 222 KIRNVAYGNSHGHGNTVH 239 (261)
Q Consensus 222 ~~~~~~~~~a~~~g~~v~ 239 (261)
++..+.+|...|+|++
T Consensus 213 --~~~~v~~a~~~G~~v~ 228 (270)
T PRK10818 213 --EDQSVLRASNQGEPVI 228 (270)
T ss_pred --CCHHHHHHHHcCCeeE
Confidence 8999999999999986
No 27
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.96 E-value=1.1e-29 Score=212.98 Aligned_cols=213 Identities=22% Similarity=0.238 Sum_probs=134.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC------------CcCCccccccccCc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL------------NKDNLMIPLVNYGV 69 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l 69 (261)
|+ +||||||||+|+|||.+||++| +|||+||+|+|++++..+++......+ ...+.+. ...+++
T Consensus 6 v~-~KGGvGKTT~~~nLA~~La~~G--~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~l 81 (270)
T cd02040 6 IY-GKGGIGKSTTTQNLSAALAEMG--KKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIF-EGFGGI 81 (270)
T ss_pred EE-eCCcCCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhhee-ecCCCe
Confidence 55 6999999999999999999999 999999999998766555443221111 1111222 234689
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+++|++....... ...........+.+.+..+. ++||||||||++..... .........||.+++|+.|+..++.++
T Consensus 82 ~~ip~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~ 159 (270)
T cd02040 82 KCVESGGPEPGVG-CAGRGVITAINLLEELGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAA 159 (270)
T ss_pred EEEeCCCCCCCCC-CcCcchhhHHHHHHhcCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHH
Confidence 9999876553211 11111111111223344455 78999999998654211 111111112999999999999999999
Q ss_pred HHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 149 QRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 149 ~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
.++++.+... +.++.++|.|+... ..... ...+ ..+.+|..++. .|| +
T Consensus 160 ~~l~~~i~~~~~~~~~~l~gVv~n~~~~-------------~~~~~-----~~~~-l~~~~g~~vl~-~Ip--------~ 211 (270)
T cd02040 160 NNICKGILKYAKSGGVRLGGLICNSRNT-------------DREDE-----LIDA-FAKRLGTQMIH-FVP--------R 211 (270)
T ss_pred HHHHHHHHHhCccCCCceEEEEEecCCC-------------hhHHH-----HHHH-HHHHcCCCeEe-ecC--------C
Confidence 8888776543 56778888886221 00011 1111 12235666554 699 8
Q ss_pred ccccCCCCCCCCcchhhhhhhhcc
Q psy14655 225 NVAYGNSHGHGNTVHHHHVLNLIG 248 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~~~~~~~~ 248 (261)
+..+.+|...|++++++.+...++
T Consensus 212 ~~~v~~A~~~g~pv~~~~p~~~aa 235 (270)
T cd02040 212 DNVVQRAELRGKTVIEYDPESKQA 235 (270)
T ss_pred cHHHHHHHHcCCceEEecCCCHHH
Confidence 889999999999999877654433
No 28
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.96 E-value=4.3e-28 Score=196.24 Aligned_cols=163 Identities=23% Similarity=0.254 Sum_probs=112.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC-------------CcCCccccccccC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL-------------NKDNLMIPLVNYG 68 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 68 (261)
|+| ||||||||+|+|||.+||+.| +|||+||+|+|++++..+++.+....+ ...+.+. ...+|
T Consensus 5 v~g-KGGvGKTt~~~nLA~~la~~G--~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 80 (212)
T cd02117 5 IYG-KGGIGKSTTSQNLSAALAEMG--KKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIF-EGFGG 80 (212)
T ss_pred EEC-CCcCcHHHHHHHHHHHHHHCC--CcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeE-eCCCC
Confidence 564 999999999999999999999 999999999999776666554432221 1112222 23579
Q ss_pred ceeecCCCCcccchhhhhhchH-HHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLM-VMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
++++|++........ ...... ....++ .++.+. ++||||||||++.... .....+....||.+++|++|+..++.
T Consensus 81 l~vlp~~~~~~~~~~-~~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~ 157 (212)
T cd02117 81 VKCVESGGPEPGVGC-AGRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALY 157 (212)
T ss_pred cEEEeCCCCCCCccc-CCcchhhHHHHHH-hccccc-cCCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHH
Confidence 999998876643221 111111 112233 566666 8999999999765521 11111220129999999999999999
Q ss_pred HHHHHHHHHHhC----CCCeEEEEEcCCC
Q psy14655 147 VAQRGYTMFKKL----NIPVAGLVMNMNS 171 (261)
Q Consensus 147 ~~~~~~~~l~~~----~~~~~giv~N~~~ 171 (261)
++.++++.++.. +.+..|+|+||+.
T Consensus 158 ~~~~l~~~i~~~~~~~~~~~~gvv~N~~~ 186 (212)
T cd02117 158 AANNICKGIRKYAKSGGVRLGGLICNSRN 186 (212)
T ss_pred HHHHHHHHHHHhCcccCCcEEEEEEeCCC
Confidence 999988888764 5568899999955
No 29
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.96 E-value=3.1e-29 Score=212.23 Aligned_cols=213 Identities=21% Similarity=0.195 Sum_probs=138.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc-------------CCccccccccCce
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK-------------DNLMIPLVNYGVK 70 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~ 70 (261)
++||||||||+|+|||..||++| +|||+||+|+|++++..+++.....++.+ .+++. ....|++
T Consensus 12 ~GKGGVGKTt~a~NLA~~La~~G--~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~-~~~~gv~ 88 (296)
T PRK13236 12 YGKGGIGKSTTSQNTLAAMAEMG--QRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML-TGFRGVK 88 (296)
T ss_pred ECCCcCCHHHHHHHHHHHHHHCC--CcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe-eCCCCeE
Confidence 78999999999999999999999 99999999999999888887654322211 11222 3356999
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
++|++...... ...+......+..+.....+++||||+|||++.... .....+...+||.+|+|+.|+..++.++.
T Consensus 89 llpa~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~g~~ 165 (296)
T PRK13236 89 CVESGGPEPGV---GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAAN 165 (296)
T ss_pred EEECCCCCCCC---CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHHHHHH
Confidence 99987433221 111111111233332222236899999999743321 11111111129999999999999999888
Q ss_pred HHHHHH----HhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhc
Q psy14655 150 RGYTMF----KKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRN 225 (261)
Q Consensus 150 ~~~~~l----~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~ 225 (261)
++++.+ .+.+++..|+|+||.+. . .+ . .+.+ ...+.+|..++. .|| ++
T Consensus 166 ~~~~~l~k~~~~~~l~i~gIv~Nr~~~-----~------~~-~-~ile------~l~~~~g~~vl~-~Ip--------~~ 217 (296)
T PRK13236 166 NIARGILKYAHTGGVRLGGLICNSRNV-----D------RE-I-ELIE------TLAKRLNTQMIH-FVP--------RD 217 (296)
T ss_pred HHHHHHHHHhhCCCceeEEEEecCCCC-----c------ch-H-HHHH------HHHHHhCcccee-eCC--------CC
Confidence 654433 34467889999998321 0 00 0 1111 122336766665 799 99
Q ss_pred cccCCCCCCCCcchhhhhhhhcccc
Q psy14655 226 VAYGNSHGHGNTVHHHHVLNLIGEE 250 (261)
Q Consensus 226 ~~~~~a~~~g~~v~~~~~~~~~~~~ 250 (261)
..+.+|...|+|++.+++.+.++..
T Consensus 218 ~~v~eA~~~~~Pv~~~~p~s~~a~~ 242 (296)
T PRK13236 218 NIVQHAELRRMTVNEYAPDSNQGNE 242 (296)
T ss_pred hHHHHHHHcCCChhhcCCCCHHHHH
Confidence 9999999999999988765544433
No 30
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.96 E-value=3.7e-29 Score=210.72 Aligned_cols=208 Identities=21% Similarity=0.167 Sum_probs=130.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCC------------CCcCCccccccccCc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPL------------LNKDNLMIPLVNYGV 69 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l 69 (261)
|+ +||||||||+|.|||..||++| +|||+||+|||++.+..+.+ ....+ ....+.+.+ ..+++
T Consensus 6 ~~-gKGGVGKTT~a~nLA~~La~~G--~rVLliD~Dpq~n~t~~l~~-~~~~~l~d~~~~~~~~~~~~~~~i~~-~~~~l 80 (279)
T PRK13230 6 FY-GKGGIGKSTTVCNIAAALAESG--KKVLVVGCDPKADCTRNLVG-EKIPTVLDVLREKGIDNLGLEDIIYE-GFNGI 80 (279)
T ss_pred EE-CCCCCcHHHHHHHHHHHHHhCC--CEEEEEeeCCcccccccccC-ccCCCHHHHHHhcCCCCCCHHHheee-CCCCc
Confidence 44 7999999999999999999999 99999999999876554433 21111 111222332 35789
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-h--HHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-T--HLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~--~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
+++|++....... ...........+.+.+..+...+||||||||+++... . ....+.+ ||.+|+|+.|+..++.
T Consensus 81 ~lipa~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~a--AD~vlIp~~p~~~si~ 157 (279)
T PRK13230 81 YCVESGGPEPGYG-CAGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFAMPLQKGL--ADDVYIVTTCDPMAIY 157 (279)
T ss_pred EEEECCCCCCCCC-cCCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCccccccccc--cceEEEeccchHHHHH
Confidence 9999876543210 0000000001112222233324799999999765421 1 1112233 8999999999999999
Q ss_pred HHHHHHHHHHh----CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhh
Q psy14655 147 VAQRGYTMFKK----LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIK 222 (261)
Q Consensus 147 ~~~~~~~~l~~----~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~ 222 (261)
++..+++.+.. .+.++.|++.|+... .. .... .+ ...+.+|..++ +.||
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~----------~~---~~~~-----~e-~l~~~~g~~vl-~~Ip------- 210 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNGRSV----------ID---APDI-----VE-EFAKKIGTNVI-GKIP------- 210 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEeccCC----------Cc---hhHH-----HH-HHHHHhCCcEE-EECC-------
Confidence 99988776653 355667777663110 00 0011 11 12334676666 4799
Q ss_pred hhccccCCCCCCCCcchhhhhhh
Q psy14655 223 IRNVAYGNSHGHGNTVHHHHVLN 245 (261)
Q Consensus 223 ~~~~~~~~a~~~g~~v~~~~~~~ 245 (261)
++..+.+|...|+|+.++++..
T Consensus 211 -~~~~v~eA~~~g~pv~~~~p~~ 232 (279)
T PRK13230 211 -MSNIITEAEIYGKTVIEYAPDS 232 (279)
T ss_pred -CChHHHHHHHcCCeEEEeCCCC
Confidence 9999999999999999776543
No 31
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.6e-27 Score=197.94 Aligned_cols=170 Identities=39% Similarity=0.638 Sum_probs=142.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC---CcCCcccc----ccccCceeec
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL---NKDNLMIP----LVNYGVKCLS 73 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~l~~~~ 73 (261)
+|+|+|||+||||+|+|||..+|+.| +||++||+|..+++.+.+|+.+....+ .....+.+ ....++++++
T Consensus 61 ~V~S~kgGvGKStva~nLA~alA~~G--~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~~ 138 (265)
T COG0489 61 AVTSGKGGVGKSTVAVNLAAALAQLG--KRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSILP 138 (265)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhcC--CcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEEEe
Confidence 47899999999999999999999999 999999999999999999999753322 11111333 2245677777
Q ss_pred CCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q psy14655 74 MGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT 153 (261)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~ 153 (261)
.+. ....+.+......+++++..+++.+|||||||+||+.+......+... +|.+++|+.|+..+...+.+.++
T Consensus 139 ~~~-----~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~-~~g~viVt~p~~~~~~~v~ka~~ 212 (265)
T COG0489 139 LGP-----VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRI-PDGVVIVTTPGKTALEDVKKAID 212 (265)
T ss_pred cCC-----CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhcc-CCeEEEEeCCccchHHHHHHHHH
Confidence 766 334455667788899999999966699999999999998887777755 88999999999999999999999
Q ss_pred HHHhCCCCeEEEEEcCCCCCCCCCC
Q psy14655 154 MFKKLNIPVAGLVMNMNSVLCPSCN 178 (261)
Q Consensus 154 ~l~~~~~~~~giv~N~~~~~~~~~~ 178 (261)
++++.+.+++|+|.||.+..|++|.
T Consensus 213 ~~~~~~~~vlGvv~Nm~~~~~~~~~ 237 (265)
T COG0489 213 MLEKAGIPVLGVVENMSYFICPRCG 237 (265)
T ss_pred HHHhcCCceEEEEecCccCcccccC
Confidence 9999999999999999998888775
No 32
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.95 E-value=1.2e-28 Score=208.56 Aligned_cols=208 Identities=17% Similarity=0.155 Sum_probs=138.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC-------------CcCCccccccccC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL-------------NKDNLMIPLVNYG 68 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 68 (261)
|+ +||||||||+++|||..|+++| +|||+||+|+|++++..+++.....++ ...+.+ ....+|
T Consensus 9 i~-~KGGvGKTt~~~nLa~~la~~g--~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~g 84 (295)
T PRK13234 9 FY-GKGGIGKSTTSQNTLAALVEMG--QKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVM-KIGYKG 84 (295)
T ss_pred EE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHh-eecCCC
Confidence 55 9999999999999999999999 999999999999887656554332221 011112 133579
Q ss_pred ceeecCCCCcccchhhhhhchHHHHHHH-HHHHHhc-cCCCCEEEEeCCCCCC-hhHHHHhhhcCCCeEEEEeCCCcchH
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLMVMQALN-KLTVQVQ-WGPCDILFIDTPPGTG-DTHLSLIQNLFIDTAIIITIPDTMSL 145 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~-~~~yd~IiiD~~~~~~-~~~~~~~~~~~ad~viiv~~~~~~s~ 145 (261)
++++|++...... . .......++ ..++.+. .++||||||||+++.. ......+....||.+|+|+.|+..++
T Consensus 85 l~lipa~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~Sl 159 (295)
T PRK13234 85 IKCVESGGPEPGV-G----CAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMAL 159 (295)
T ss_pred eEEEECCCCCCCC-C----CCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHHH
Confidence 9999987544321 0 111112233 2455532 2689999999965432 12211111012999999999999999
Q ss_pred HHHHHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhh
Q psy14655 146 QVAQRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLII 221 (261)
Q Consensus 146 ~~~~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~ 221 (261)
.++.++++.+.+. +++..|+|+|+.+. ....... +...+.+|.+++. .||
T Consensus 160 ~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt-------------~~~~~~~------e~l~e~~g~~ll~-~Ip------ 213 (295)
T PRK13234 160 YAANNIAKGILKYANSGGVRLGGLICNERQT-------------DRELELA------EALAARLGSKLIH-FVP------ 213 (295)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-------------chHHHHH------HHHHHHhCCceEE-ECC------
Confidence 9999998877653 46688999996331 1111111 1223346766664 799
Q ss_pred hhhccccCCCCCCCCcchhhhhhhh
Q psy14655 222 KIRNVAYGNSHGHGNTVHHHHVLNL 246 (261)
Q Consensus 222 ~~~~~~~~~a~~~g~~v~~~~~~~~ 246 (261)
++..+.+|...|+|++++++.+.
T Consensus 214 --~d~~V~eA~~~g~pv~~~~p~s~ 236 (295)
T PRK13234 214 --RDNIVQHAELRRMTVIEYAPDSK 236 (295)
T ss_pred --CchHHHHHHHcCCceEEECCCCH
Confidence 99999999999999998765443
No 33
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.95 E-value=2.9e-27 Score=190.61 Aligned_cols=156 Identities=23% Similarity=0.334 Sum_probs=123.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCcccccCCCCCCCCCc---------CCccccccccCce
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGPSIPILMNLPDTPLLNK---------DNLMIPLVNYGVK 70 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 70 (261)
+|+|.|||+||||+|+|||.+||+ .| +|||+||+|++.++++.+++.+...++.+ .+.+.....++++
T Consensus 39 ~v~s~kgG~GkSt~a~nLA~~la~~~g--~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~~l~ 116 (207)
T TIGR03018 39 MVTSSLPGEGKSFTAINLAISLAQEYD--KTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGRLS 116 (207)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHhcC--CeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCCCEE
Confidence 478999999999999999999997 58 99999999999988888888876544321 1222333457899
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCC--CEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPC--DILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~y--d~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
++|.+......... .....+.++++.++ ++| ||||||+||+.+.. ...+... ||.+|+|++++..+...
T Consensus 117 vl~~g~~~~~~~~~-----~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l~~~--aD~viiV~~~~~~~~~~ 188 (207)
T TIGR03018 117 LLPAGRRHPNPTEL-----LASQRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARALARL--VGQIVLVVEEGRTTQEA 188 (207)
T ss_pred EEeCCCCCCCHHHH-----hCcHHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHHHHh--CCEEEEEEECCCCCHHH
Confidence 99988776432221 12346788888888 788 99999999998644 3344445 99999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEEc
Q psy14655 148 AQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 148 ~~~~~~~l~~~~~~~~giv~N 168 (261)
+.++++.++ +.+++|+|+|
T Consensus 189 ~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 189 VKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHhc--CCCeEEEEeC
Confidence 999999999 6688999998
No 34
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.95 E-value=1.1e-27 Score=197.29 Aligned_cols=211 Identities=22% Similarity=0.339 Sum_probs=154.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCcccccCCCCCCC-CCc--------CCccccccccCce
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGPSIPILMNLPDTPL-LNK--------DNLMIPLVNYGVK 70 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~l~ 70 (261)
+|+|+|||+||||+|+||+..++ .+| ++|++||+|...++++.+||.++.+. +.+ .+.+......|++
T Consensus 6 av~SgKGGvGKTtitanlga~~~~~~~--k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~gl~ 83 (262)
T COG0455 6 AVVSGKGGVGKTTITANLGAALAALGG--KVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDGLY 83 (262)
T ss_pred EEEecCCCccHHHHHHhHHHHHHhhCC--CeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCCEE
Confidence 47899999999999999955555 555 88899999999999999999988655 321 2333334348999
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
++|.+........ ...+.+..+++.+. ..|||||+|||+|++......+.. +|.+|+|+.|+..++.++..
T Consensus 84 vipg~~~~~~~~~------~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~~~~~~~--sd~~viVt~pe~~si~~A~~ 154 (262)
T COG0455 84 VLPGGSGLEDLAK------LDPEDLEDVIKELE-ELYDYILIDTGAGLSRDTLSFILS--SDELVIVTTPEPTSITDAYK 154 (262)
T ss_pred EeeCCCChHHHhh------cCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHHHHHHHh--cCcEEEEeCCCcchHHHHHH
Confidence 9998876643322 23445777888888 888999999999999888888776 89999999999999999999
Q ss_pred HHHHHHhCCCCeEE--EEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhcccc
Q psy14655 151 GYTMFKKLNIPVAG--LVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAY 228 (261)
Q Consensus 151 ~~~~l~~~~~~~~g--iv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~ 228 (261)
+++.+.+.+.+..+ +|+||++.. .+...... ...+...+.. .+. .+| ....+
T Consensus 155 ~i~~~~~~~~~~~~~~vV~N~v~~~-----------~e~~~~~~---~~~~~~~~~~---~~~-~i~--------~~~~v 208 (262)
T COG0455 155 TIKILSKLGLDLLGRRVVLNRVRST-----------KEGVDVAA---LLIQVVKQVP---VLQ-VIP--------FDPEV 208 (262)
T ss_pred HHHHHHHcCCccccceEEEEecccc-----------cchhHHHH---HHHHHHHhCC---cee-Eec--------cChHH
Confidence 99999999988777 999996531 11111110 0111111111 112 377 66677
Q ss_pred CCCCCCCCcchhhhhhhhcc
Q psy14655 229 GNSHGHGNTVHHHHVLNLIG 248 (261)
Q Consensus 229 ~~a~~~g~~v~~~~~~~~~~ 248 (261)
.++...|.|+..+.+.+.++
T Consensus 209 ~~a~~~g~p~~~~~p~s~as 228 (262)
T COG0455 209 RRALAEGKPIVLYSPNSKAS 228 (262)
T ss_pred HHHhhcCCcEEEeCCCCHHH
Confidence 88889999988766555443
No 35
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.95 E-value=4.9e-27 Score=201.59 Aligned_cols=194 Identities=18% Similarity=0.219 Sum_probs=145.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCC------c--------cccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDN------L--------MIPLVN 66 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~------~--------~~~~~~ 66 (261)
+|+|+|||+||||+|+|||..|+++| ++|++||+|+|++++..++|.+..+.+...+ . ..+ ..
T Consensus 97 av~~~KGGvGkTT~a~nLA~~la~~g--~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 173 (322)
T TIGR03815 97 AVIGGRGGAGASTLAAALALAAARHG--LRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDALP-RR 173 (322)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhCC-Cc
Confidence 47899999999999999999999999 9999999999999888888887654432100 0 011 24
Q ss_pred cCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 67 YGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
.++.+++.+..... ......++.+++.++ ++|||||||||++.+.....++.. ||.+++|+.++..++.
T Consensus 174 ~~l~vl~~~~~~~~--------~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~L~~--AD~vliV~~~~~~sl~ 242 (322)
T TIGR03815 174 GGLSVLSWGRAVGA--------ALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETALES--ADLVLVVVPADVRAVA 242 (322)
T ss_pred CCeEEEecCCCCcC--------CCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHHHHH--CCEEEEEcCCcHHHHH
Confidence 57888887654311 122455788888888 899999999999998887788877 9999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhcc
Q psy14655 147 VAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNV 226 (261)
Q Consensus 147 ~~~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~ 226 (261)
.+.++++.+...+. .+.+|+|+... ....... ..+.+|.+++. .|| ++.
T Consensus 243 ~a~r~l~~l~~~~~-~~~lVv~~~~~-----------~~~~~~~----------i~~~lg~~v~~-~Ip--------~d~ 291 (322)
T TIGR03815 243 AAARVCPELGRRNP-DLRLVVRGPAP-----------AGLDPEE----------IAESLGLPLLG-EVR--------DQR 291 (322)
T ss_pred HHHHHHHHHhhhCC-CeEEEEeCCCC-----------CCCCHHH----------HHHHhCCCcee-eCC--------CCh
Confidence 99999998887654 36677776221 0001111 22335666655 589 888
Q ss_pred ccCCCCCCCCcch
Q psy14655 227 AYGNSHGHGNTVH 239 (261)
Q Consensus 227 ~~~~a~~~g~~v~ 239 (261)
.+.++.++|+++.
T Consensus 292 ~v~~a~~~G~~~~ 304 (322)
T TIGR03815 292 GLARALERGGLPA 304 (322)
T ss_pred hHHHHHhCCCCcC
Confidence 8999999999876
No 36
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.95 E-value=1.7e-27 Score=194.06 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=124.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|.||||||||+|.|||.+|+++| ++|++||+|+|++. ..|++....... .. .......
T Consensus 5 ~v~n~KGGvGKTT~a~nLA~~la~~G--~~VlliD~DpQ~s~-~~w~~~~~~~~~-----~~----~~~~~~~------- 65 (231)
T PRK13849 5 TFCSFKGGAGKTTALMGLCAALASDG--KRVALFEADENRPL-TRWKENALRSNT-----WD----PACEVYA------- 65 (231)
T ss_pred EEECCCCCccHHHHHHHHHHHHHhCC--CcEEEEeCCCCCCH-HHHHHhhccccC-----CC----ccceecC-------
Confidence 47899999999999999999999999 99999999999854 455543211100 00 0000000
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHh---
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKK--- 157 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~--- 157 (261)
......++..++.+..++||||||||||+.+.....++.. ||.+|+|+.|+..++..+.++++.+.+
T Consensus 66 --------~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~al~~--aD~vliP~~ps~~d~~~~~~~~~~v~~~~~ 135 (231)
T PRK13849 66 --------ADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIAS--SNLLLIPTMLTPLDIDEALSTYRYVIELLL 135 (231)
T ss_pred --------CCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHH--CCEEEEeccCcHHHHHHHHHHHHHHHHHHH
Confidence 0011235556666543679999999999999888888877 999999999999999988888765543
Q ss_pred ---CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCC
Q psy14655 158 ---LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGH 234 (261)
Q Consensus 158 ---~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~ 234 (261)
.+++ ..+++||+... +. . ...+ .+++... +..++.+.|| ++.+|.++...
T Consensus 136 ~~~~~l~-~~iv~~~~~~~------~~-----~---~~~~-~~~~~~~---~~~vl~t~I~--------~r~~~~~a~~~ 188 (231)
T PRK13849 136 SENLAIP-TAILRQRVPVG------RL-----T---TSQR-AMSDMLE---SLPVVDSPMH--------ERDAFAAMKER 188 (231)
T ss_pred HhCCCCC-eEEEEEecccc------cC-----C---HHHH-HHHHHHh---cCCCCCcccc--------chHHHHHHHhc
Confidence 2444 45999985420 00 0 0000 1222221 3347788888 88899999999
Q ss_pred CCcch
Q psy14655 235 GNTVH 239 (261)
Q Consensus 235 g~~v~ 239 (261)
|.+..
T Consensus 189 G~~~~ 193 (231)
T PRK13849 189 GMLHL 193 (231)
T ss_pred CCccc
Confidence 98654
No 37
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.95 E-value=9.1e-27 Score=187.51 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=125.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC-CCCCCc--------CCccccccccCcee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD-TPLLNK--------DNLMIPLVNYGVKC 71 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~~ 71 (261)
+|+|+|||+||||+|.|||..||+.| +|||+||+|++.+++..+++.+. ..++.+ .+.+.....+++++
T Consensus 21 ~v~s~kgG~GKTt~a~~LA~~la~~G--~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l~~ 98 (204)
T TIGR01007 21 LITSVKPGEGKSTTSANIAVAFAQAG--YKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENLFV 98 (204)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCEEE
Confidence 47899999999999999999999999 99999999999988777777654 222211 12222233478999
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH-HHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH-LSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~-~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
+|.+.......... ....++++++.++ .+|||||||+||...... ...... ||.+++|+.|+..+...+.+
T Consensus 99 l~~g~~~~~~~~~l-----~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~~~~~--~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 99 ITSGPVPPNPTELL-----QSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAIIARA--CDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EeCCCCCCCHHHHh-----CcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHHh--CCeEEEEEECCCCCHHHHHH
Confidence 99887654322221 2345788888888 899999999999433222 222333 99999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEcCCCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+++.+.+++|+|+|+++.
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~ 192 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDI 192 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCccc
Confidence 9999999999999999999764
No 38
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.95 E-value=3.8e-28 Score=203.05 Aligned_cols=206 Identities=21% Similarity=0.203 Sum_probs=133.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC----------CcCCccccccccCcee
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL----------NKDNLMIPLVNYGVKC 71 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~ 71 (261)
|+ +||||||||+|+|||.+||+.| |||+||+|+|++.+..+++... ..+ .....+ ....+++++
T Consensus 7 v~-~KGGvGKTT~a~nLA~~La~~G---rVLliD~Dpq~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 80 (264)
T PRK13231 7 IY-GKGGIGKSTTVSNMAAAYSNDH---RVLVIGCDPKADTTRTLCGKRI-PTVLDTLKDNRKPELEDII-HEGFNGILC 80 (264)
T ss_pred EE-CCCCCcHHHHHHHHhcccCCCC---EEEEEeEccCcccchhhhcCCc-cHHHHHHhhcCCCChhHhh-eeCCCCeEE
Confidence 56 5999999999999999999864 7999999999876655554322 111 001111 223568889
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHH--H-HhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHL--S-LIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~--~-~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+|++...... ............+.+.++.+. ++||||||||++....... . ...+ ||.+++|+.|+..++.++
T Consensus 81 i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~~~~~~~~~~~~~a--aD~vlip~~p~~~si~~~ 156 (264)
T PRK13231 81 VESGGPEPGV-GCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDVVCGGFSVPLREDY--ADEVYIVTSGEYMSLYAA 156 (264)
T ss_pred EEcCCCCCCC-CCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCceEccccccccccc--cceeEEEecCchhHHHHH
Confidence 9877543211 100111001112445556666 8899999999875421111 0 1123 999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhcccc
Q psy14655 149 QRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAY 228 (261)
Q Consensus 149 ~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~ 228 (261)
.++++.++..+.+..+++.|+... ..... .+.+ ..+.+|..++ ..|| ++.++
T Consensus 157 ~~~~~~i~~~~~~~~~vv~~~~~~-------------~~~~~-----~~~~-l~~~~~~~vl-~~I~--------~~~~v 208 (264)
T PRK13231 157 NNIARGIKKLKGKLGGIICNCRGI-------------DNEVE-----IVSE-FASRIGSRII-GVIP--------RSNLV 208 (264)
T ss_pred HHHHHHHHHcCCcceEEEEcCCCC-------------ccHHH-----HHHH-HHHHhCCCeE-EeCC--------CCHHH
Confidence 999999987766667888886321 00001 1111 2233566666 4699 99999
Q ss_pred CCCCCCCCcchhhhhhh
Q psy14655 229 GNSHGHGNTVHHHHVLN 245 (261)
Q Consensus 229 ~~a~~~g~~v~~~~~~~ 245 (261)
.+|...|+|++++.+..
T Consensus 209 ~~a~~~g~~v~~~~~~~ 225 (264)
T PRK13231 209 QESELDAKTVVETFPES 225 (264)
T ss_pred HHHHHcCCceeEeCCCC
Confidence 99999999998776543
No 39
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.94 E-value=1.6e-26 Score=194.28 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=126.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc-------CCccc-cccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK-------DNLMI-PLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~l~~~ 72 (261)
+|+|+|||+||||+|.|||..+|+.| +|||+||+|++.+.+..+++.+..+++.+ .+.+. ....++++++
T Consensus 107 ~vts~~~g~Gktt~a~nLA~~la~~g--~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l~~l 184 (274)
T TIGR03029 107 AVVSAKSGEGCSYIAANLAIVFSQLG--EKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENLSVL 184 (274)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcC--CeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCEEEE
Confidence 48999999999999999999999999 99999999999988888888766554422 11111 1234689999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
|+|.......... ....+..+++.++ +.||||||||||..... ...+... +|.+++|+.++..+..++.+.
T Consensus 185 p~g~~~~~~~~~~-----~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~~~~--~d~vilV~~~~~t~~~~~~~~ 256 (274)
T TIGR03029 185 PAGAIPPNPQELL-----ARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIVATR--ARGTLIVSRVNETRLHELTSL 256 (274)
T ss_pred eCcCCCCCHHHHh-----CcHHHHHHHHHHH-hcCCEEEEeCCCcccccHHHHHHHh--CCeEEEEEECCCCCHHHHHHH
Confidence 9998764333322 1235788888888 89999999999986433 3333333 999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcC
Q psy14655 152 YTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~ 169 (261)
++.+++.+.+++|+|+|+
T Consensus 257 ~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 257 KEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHhCCCCEEEEEeCC
Confidence 999999999999999995
No 40
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.94 E-value=7.2e-27 Score=186.57 Aligned_cols=155 Identities=27% Similarity=0.358 Sum_probs=111.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|+|||+||||+|++||.+|+++| ++||+||+|+|.+.+..+++............... +.. . .
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g--~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~-~ 67 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKG--KKVLLIDLDPQAPNLSILFGVYDILREGLENANAI---------LKN--F-E 67 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH---------HES--C-C
T ss_pred EEEcCCCCccHHHHHHHHHhcccccc--ccccccccCcccccHHHHhcchhhccccceehhhh---------hhc--c-c
Confidence 48899999999999999999999999 99999999999987766665410000000000000 000 0 0
Q ss_pred chhhhhh-chHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 81 KSAAIWR-GLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 81 ~~~~~~~-~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
....... .......++++++.+....||||||||||+.+.....++.. +|.+|+|+.|+..++.++..+++.+++.+
T Consensus 68 ~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~l~~--ad~viv~~~~~~~~i~~~~~~~~~l~~~~ 145 (195)
T PF01656_consen 68 SQDIYQGEEYLDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNALAA--ADYVIVPIEPDPSSIEGAERLIELLKRLG 145 (195)
T ss_dssp HHHHHHHCHCHHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHHHHT--SSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhhhccccceeecccccccHHHHHHHHh--CceeeeecCCcHHHHHHHHHHHHHHHHhc
Confidence 0000000 00345568888888652459999999999999888878877 99999999999999999999999999876
Q ss_pred --CCeEEEEEcCCC
Q psy14655 160 --IPVAGLVMNMNS 171 (261)
Q Consensus 160 --~~~~giv~N~~~ 171 (261)
.+.+++|+||+.
T Consensus 146 ~~~~~~~vv~N~v~ 159 (195)
T PF01656_consen 146 KKLKIIGVVINRVD 159 (195)
T ss_dssp HTEEEEEEEEEEET
T ss_pred cccceEEEEEeeeC
Confidence 457999999954
No 41
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.94 E-value=1.9e-25 Score=176.21 Aligned_cols=151 Identities=25% Similarity=0.370 Sum_probs=107.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|+|||+||||+|+|||..| ++|++||+|++.++++.+|+.+....................+.+.+..
T Consensus 3 ~v~s~kgG~GKSt~a~nLA~~l------~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (179)
T cd03110 3 AVISGKGGTGKTTVTAALAALL------KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLC--- 73 (179)
T ss_pred EEEcCCCCCCHHHHHHHHHHHH------hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhccccch---
Confidence 4789999999999999999999 5899999999999999999987654321110000001111111111111
Q ss_pred chhhhhhchHHHHHHHHHHHHh-ccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQV-QWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l-~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
......+.+.+..+ ...+|||||+||||+.+......+.. ||.+++|+.|+..++.++.++++.+++.+
T Consensus 74 --------~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l~~--aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 --------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTG--ADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred --------HHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHHHc--CCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 11112233332211 13789999999999998877777766 99999999999999999999999999888
Q ss_pred CCeEEEEEcCCC
Q psy14655 160 IPVAGLVMNMNS 171 (261)
Q Consensus 160 ~~~~giv~N~~~ 171 (261)
.+ +++|+|+++
T Consensus 144 ~~-~~vV~N~~~ 154 (179)
T cd03110 144 IP-VGVVINKYD 154 (179)
T ss_pred CC-EEEEEeCCC
Confidence 76 689999965
No 42
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.93 E-value=2.2e-25 Score=175.65 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=151.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC-CCCCc----------------------C
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT-PLLNK----------------------D 58 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~-~~~~~----------------------~ 58 (261)
-+++|||+||||+|+.|+..+.+++ +++||+||+|+. .+++..+|++.. ..+.. .
T Consensus 4 aI~GKGG~GKTtiaalll~~l~~~~-~~~VLvVDaDpd-~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~ 81 (255)
T COG3640 4 AITGKGGVGKTTIAALLLKRLLSKG-GYNVLVVDADPD-SNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE 81 (255)
T ss_pred EEecCCCccHHHHHHHHHHHHHhcC-CceEEEEeCCCC-CChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence 3689999999999999776666554 499999999995 578999998863 11111 0
Q ss_pred Ccc-------ccccccCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCC
Q psy14655 59 NLM-------IPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFI 131 (261)
Q Consensus 59 ~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~a 131 (261)
++. .....++++.+-.|........+.++ ....++.+++++..++||+||+||.+|+.+.-+..... +
T Consensus 82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp---~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~--v 156 (255)
T COG3640 82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP---MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEG--V 156 (255)
T ss_pred CcchhhhhHHHhhhcCCccEEEeccccCCCCcccch---HHHHHHHHHHHHhcccCcEEEEecccchhhhccccccC--C
Confidence 000 01223456666667766666666555 33568889999986779999999999999999998888 9
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccc
Q psy14655 132 DTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWN 211 (261)
Q Consensus 132 d~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 211 (261)
|.+++|++|+..|+..+++..+...+.+.+.+++|+|++.. ....+... . .-.|..++.
T Consensus 157 D~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e--------------~e~~~~~~--~-----~~~~~~vlg 215 (255)
T COG3640 157 DLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE--------------EEELLREL--A-----EELGLEVLG 215 (255)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc--------------hhHHHHhh--h-----hccCCeEEE
Confidence 99999999999999999999999999998999999999552 11111110 1 112333333
Q ss_pred cccCcchhhhhhhccccCCCCCCCCcchhhh
Q psy14655 212 FLIPLCNLIIKIRNVAYGNSHGHGNTVHHHH 242 (261)
Q Consensus 212 ~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~ 242 (261)
.|| ++..+.++...|.|+..+.
T Consensus 216 -~iP--------~d~~v~~~dl~G~pl~~~~ 237 (255)
T COG3640 216 -VIP--------YDPEVVEADLKGEPLNEEP 237 (255)
T ss_pred -Ecc--------CCHHHHhccccCCccccch
Confidence 599 8999999999999998773
No 43
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.91 E-value=4.5e-24 Score=202.24 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=130.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------CCccccccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------DNLMIPLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~ 72 (261)
+|+|.|||+||||+|+|||..||+.| +|||+||+|+++++++.+|+....+++.+ ...+.....++++++
T Consensus 550 ~vts~~~G~GKTt~a~nLA~~lA~~g--~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~~l 627 (754)
T TIGR01005 550 ETQRPRPVLGKSDIEANAAALIASGG--KRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAASLPML 627 (754)
T ss_pred EeecCCCCCChhHHHHHHHHHHHhCC--CeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCCeeEe
Confidence 48999999999999999999999999 99999999999888888898876655422 222334456799999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGY 152 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~ 152 (261)
|+|.......... ....+.++++.++ ++||||||||||..+......+... +|.+++|+.++..+...+.+.+
T Consensus 628 ~~g~~~~~~~~ll-----~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l~~~-~D~vl~v~~~~~~~~~~~~~~~ 700 (754)
T TIGR01005 628 DSGLFPHGITELL-----ASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAAARL-AIIMLLVTAYDRVVVECGRADA 700 (754)
T ss_pred cCCCCCCCHHHHh-----ccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHhhhh-CCeEEEEEEeCceeHHHHHHHH
Confidence 9986543322221 2245677888888 8999999999998875554444322 8999999999999999999999
Q ss_pred HHHHhCCCCeEEEEEcCCCC
Q psy14655 153 TMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 153 ~~l~~~~~~~~giv~N~~~~ 172 (261)
+.+...+.++.|+|+|+++.
T Consensus 701 ~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 701 QGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred HHHHhcCCceEEEEecCCCh
Confidence 99999898999999999653
No 44
>PRK11519 tyrosine kinase; Provisional
Probab=99.91 E-value=1.7e-23 Score=196.38 Aligned_cols=162 Identities=19% Similarity=0.281 Sum_probs=132.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------CCccccccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------DNLMIPLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~ 72 (261)
+|+|.+||+||||+|.|||..+|..| +|||+||+|++.++++.+++.....++.+ .+.+.+...++++++
T Consensus 530 ~vts~~~geGKTt~a~nLA~~la~~g--~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l~~l 607 (719)
T PRK11519 530 MMTGVSPSIGKTFVCANLAAVISQTN--KRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANFDLI 607 (719)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCEEEE
Confidence 47899999999999999999999999 99999999999998888888876655532 233444456899999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGY 152 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~ 152 (261)
|+|...+..... .....+.++++.++ .+||||||||||.........+.. .||.+++|+.++......+...+
T Consensus 608 p~g~~~~~~~el-----l~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l~~-~~d~~l~Vvr~~~t~~~~~~~~~ 680 (719)
T PRK11519 608 PRGQVPPNPSEL-----LMSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGR-HVGTTLMVARYAVNTLKEVETSL 680 (719)
T ss_pred eCCCCCCCHHHH-----hhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHHHHH-HCCeEEEEEeCCCCCHHHHHHHH
Confidence 999866543332 23456888999998 899999999999765433333322 29999999999999999999999
Q ss_pred HHHHhCCCCeEEEEEcCCC
Q psy14655 153 TMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 153 ~~l~~~~~~~~giv~N~~~ 171 (261)
+.+++.+.+++|+|+|++.
T Consensus 681 ~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 681 SRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred HHHHhCCCCeEEEEEeCCc
Confidence 9999999999999999964
No 45
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.91 E-value=1.8e-23 Score=196.43 Aligned_cols=162 Identities=14% Similarity=0.234 Sum_probs=130.2
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------CCccccccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------DNLMIPLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~ 72 (261)
+|+|.+||+||||+|.|||..+|..| +|||+||+|++.+.++.+|+.....++.+ .+.+.+...++++++
T Consensus 535 ~vtS~~~g~GKTtva~nLA~~la~~G--~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~vl 612 (726)
T PRK09841 535 MITGATPDSGKTFVSSTLAAVIAQSD--QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVI 612 (726)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCEEEE
Confidence 47899999999999999999999999 99999999999988888888776554422 233344445799999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGY 152 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~ 152 (261)
|+|.......... ....+..+++.++ ++||||||||||.........+.. .||.+++|+.++..+...+...+
T Consensus 613 ~~g~~~~~p~ell-----~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~la~-~ad~~llVvr~~~t~~~~~~~~~ 685 (726)
T PRK09841 613 TRGQVPPNPSELL-----MRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGR-SVGTSLLVARFGLNTAKEVSLSM 685 (726)
T ss_pred eCCCCCCCHHHHh-----CcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHHHHH-hCCeEEEEEeCCCCCHHHHHHHH
Confidence 9988664333322 2346888888888 899999999999876433223222 29999999999999999999999
Q ss_pred HHHHhCCCCeEEEEEcCCC
Q psy14655 153 TMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 153 ~~l~~~~~~~~giv~N~~~ 171 (261)
+.+.+.+.+++|+|+|+++
T Consensus 686 ~~l~~~~~~~~G~VlN~~~ 704 (726)
T PRK09841 686 QRLEQAGVNIKGAILNGVI 704 (726)
T ss_pred HHHHhCCCceEEEEEeCcc
Confidence 9999999999999999965
No 46
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.91 E-value=3e-23 Score=149.24 Aligned_cols=100 Identities=25% Similarity=0.351 Sum_probs=91.2
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLIT 79 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 79 (261)
+++|+|||+||||++.|||.++++. | ++|+++|+|+|.++
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~~--~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEAG--RRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcCC--CcEEEEECCCCCCC-------------------------------------
Confidence 4789999999999999999999998 9 99999999999753
Q ss_pred cchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 80 EKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
||||+||||+.+.....++.. ||.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~l~~--aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAALDQ--ADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHHHHH--cCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 999999999999888888877 99999999999999999999999998876
Q ss_pred C---CeEEEEEcC
Q psy14655 160 I---PVAGLVMNM 169 (261)
Q Consensus 160 ~---~~~giv~N~ 169 (261)
. ....+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 4 378889986
No 47
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.91 E-value=2.3e-23 Score=176.08 Aligned_cols=160 Identities=25% Similarity=0.201 Sum_probs=95.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------------CCcccccccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------------DNLMIPLVNY 67 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 67 (261)
|+ +||||||||+|+|||.+||++| +|||+||+|+|.+++..+++.....++.+ .+++......
T Consensus 5 v~-gKGGvGKTT~a~nLA~~La~~g--~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~~~ 81 (296)
T TIGR02016 5 IY-GKGGSGKSFTTTNLSHMMAEMG--KRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTTIM 81 (296)
T ss_pred EE-CCCCCCHHHHHHHHHHHHHHCC--CeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecccc
Confidence 56 8999999999999999999999 99999999999988877766332222211 0011111000
Q ss_pred CceeecCCCCcccchh-hhh---hchHHHHHHHHHHHH---hccCCCCEEEEeCCCCC---ChhHHHHhhhcCCCeEEEE
Q psy14655 68 GVKCLSMGNLITEKSA-AIW---RGLMVMQALNKLTVQ---VQWGPCDILFIDTPPGT---GDTHLSLIQNLFIDTAIII 137 (261)
Q Consensus 68 ~l~~~~~~~~~~~~~~-~~~---~~~~~~~~l~~~l~~---l~~~~yd~IiiD~~~~~---~~~~~~~~~~~~ad~viiv 137 (261)
+. +.+........ ... .+. ........++. +. .+||||||||++.. +......... ||.+++|
T Consensus 82 ~~---~~~~~~~e~~~~~~~~gc~~~-~~~~~~~~l~~l~~~~-~~yD~IliD~~~~~~~~g~~~~~a~~~--Ad~viVv 154 (296)
T TIGR02016 82 NG---SGGVYGMELGGPEVGRGCGGR-GIIHGFDLLEKLGFHD-WDFDFVLMDFLGDVVCGGFATPLARSL--AEEVIVI 154 (296)
T ss_pred Cc---CCCcceeecCCCCcccccCcc-hhhHHHHHHHHhhhhc-ccCCEEEEecCCCccccccccchhhhh--CCeEEEE
Confidence 10 10000000000 000 000 00111233333 33 58999999997543 1111122233 9999999
Q ss_pred eCCCcchHHHHHHHHH---HHHhCC--CCeEEEEEcCCC
Q psy14655 138 TIPDTMSLQVAQRGYT---MFKKLN--IPVAGLVMNMNS 171 (261)
Q Consensus 138 ~~~~~~s~~~~~~~~~---~l~~~~--~~~~giv~N~~~ 171 (261)
+.|+..++.++..+.+ ++++.+ .+++|+|+||+.
T Consensus 155 t~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~ 193 (296)
T TIGR02016 155 GSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDD 193 (296)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCC
Confidence 9999999987776655 444553 668999999953
No 48
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.90 E-value=1.1e-23 Score=169.49 Aligned_cols=203 Identities=23% Similarity=0.382 Sum_probs=133.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCC----------CCCcC------------
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP----------LLNKD------------ 58 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~----------~~~~~------------ 58 (261)
+|+|+|||+||||+|+|||..|+.. ++++++|||...|+++.+|+.+... .+...
T Consensus 5 AV~sGKGGtGKTTva~~la~~l~~~---~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~vC 81 (284)
T COG1149 5 AVASGKGGTGKTTVAANLAVLLGDK---YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAEVC 81 (284)
T ss_pred EEeecCCCCChhhHHHHHHHHhccc---cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHHhC
Confidence 5899999999999999999999887 7999999999999999999876432 11110
Q ss_pred --Cccc--ccccc--------------------Cceeec--CCCCcccchh--------hhhhchHHHHH-HHHHHHHhc
Q psy14655 59 --NLMI--PLVNY--------------------GVKCLS--MGNLITEKSA--------AIWRGLMVMQA-LNKLTVQVQ 103 (261)
Q Consensus 59 --~~~~--~~~~~--------------------~l~~~~--~~~~~~~~~~--------~~~~~~~~~~~-l~~~l~~l~ 103 (261)
+.+. +...+ -+...+ .|........ .+..+...... +..+....+
T Consensus 82 ~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~a~ 161 (284)
T COG1149 82 RFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHAK 161 (284)
T ss_pred CCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHhhh
Confidence 0010 00000 000000 0000000000 00011111111 222222333
Q ss_pred cCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCccccc
Q psy14655 104 WGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFEL 183 (261)
Q Consensus 104 ~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~ 183 (261)
+.-|++|||+|||.+..+...+.. +|.+|+|++|+..+++++++.++..+.++++ .++|+||+..
T Consensus 162 -E~~~~~IIDsaaG~gCpVi~sl~~--aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~----------- 226 (284)
T COG1149 162 -ELADLLIIDSAAGTGCPVIASLKG--ADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNL----------- 226 (284)
T ss_pred -hhcceeEEecCCCCCChHHHhhcc--CCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCC-----------
Confidence 336999999999999999999988 9999999999999999999999999999998 7799999531
Q ss_pred ccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCCcchh
Q psy14655 184 YENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHH 240 (261)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~ 240 (261)
... .+.+ ..++. |.+++. .|| ++..+.++...|.++.+
T Consensus 227 -g~s--~ie~--~~~e~-----gi~il~-~IP--------yd~~i~~~~~~g~~~~~ 264 (284)
T COG1149 227 -GDS--EIEE--YCEEE-----GIPILG-EIP--------YDKDIPEAYVNGEPFVE 264 (284)
T ss_pred -Cch--HHHH--HHHHc-----CCCeeE-ECC--------cchhHHHHHhCCCcccc
Confidence 111 1111 22222 333333 499 89999999999999987
No 49
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.88 E-value=3e-22 Score=159.66 Aligned_cols=141 Identities=21% Similarity=0.283 Sum_probs=103.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|.|||+||||.+..||.+|+++| .+|.+||+||+++...|.-.......+ ..++.+...
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~pl~~W~~~a~~~~~~----------~~~~~V~~~------ 66 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARG--ARVALIDADPNQPLAKWAENAQRPGAW----------PDRIEVYEA------ 66 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCcHHHHHHhccccCCC----------CCCeeEEec------
Confidence 47899999999999999999999999 999999999999765443222111111 112222111
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC--
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-- 158 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-- 158 (261)
.....+...++......|||||+|+.++-+.....++.. +|.|++|+.++..+..++.++++.+.+.
T Consensus 67 ---------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~aia~--sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~ 135 (231)
T PF07015_consen 67 ---------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYAIAR--SDLVLIPMQPSQLDADEAAKTFKWVRRLEK 135 (231)
T ss_pred ---------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHHHHH--CCEEEECCCCChHHHHHHHHHHHHHHHHHH
Confidence 111235666666543569999999999888887777776 9999999999999999999988877653
Q ss_pred ----CCCeEEEEEcCCC
Q psy14655 159 ----NIPVAGLVMNMNS 171 (261)
Q Consensus 159 ----~~~~~giv~N~~~ 171 (261)
+++ ..++++|++
T Consensus 136 ~~~~~ip-~~Vl~Tr~~ 151 (231)
T PF07015_consen 136 AERRDIP-AAVLFTRVP 151 (231)
T ss_pred hhCCCCC-eeEEEecCC
Confidence 334 568888854
No 50
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.88 E-value=7.6e-23 Score=169.59 Aligned_cols=168 Identities=18% Similarity=0.209 Sum_probs=108.6
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC------CCCCCcC--------Cccccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD------TPLLNKD--------NLMIPLVN 66 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~------~~~~~~~--------~~~~~~~~ 66 (261)
+++++|||+||||+|+++|..+|+.| +|||+||+|++ ++++.+|+.+- ......- ..+.....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g--~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~ 79 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQG--KKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ 79 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCC--CCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHH
Confidence 37899999999999999999999999 99999999998 58888888762 1111100 00000001
Q ss_pred cCceeecCCCCcccc-----hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH------------HHHhhhc
Q psy14655 67 YGVKCLSMGNLITEK-----SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------------LSLIQNL 129 (261)
Q Consensus 67 ~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------------~~~~~~~ 129 (261)
..++.+..+...... .....++....-.+.++.+.+...+||+||+||||. ++.. ...+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPt-g~tlrlL~lp~~l~~~~~~l~d~ 158 (254)
T cd00550 80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPT-GHTLRLLSLPTVLSWAREILSDP 158 (254)
T ss_pred HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc-HHHHHHHHhHHHHHHHHHHhcCC
Confidence 111122211000000 000112222233344454555446899999999994 3321 1122222
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 130 FIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 130 ~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+++|+.|+..++.++.++++.+...+.+..|+|+|++..
T Consensus 159 ~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~ 201 (254)
T cd00550 159 ERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP 201 (254)
T ss_pred cceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence 2458999999999999999999999999999999999999765
No 51
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.88 E-value=4.2e-22 Score=169.20 Aligned_cols=194 Identities=23% Similarity=0.280 Sum_probs=121.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcC---Cccc---------cccccCcee
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKD---NLMI---------PLVNYGVKC 71 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~l~~ 71 (261)
.+|||+||||+++|||.+||++| +||++||+|++++++..+||....+.+.+. ..+. .....|+.+
T Consensus 37 ~gkgG~GKSt~a~nLa~~la~~g--~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~~~~gv~~ 114 (329)
T cd02033 37 YGKGGIGKSFTLANLSYMMAQQG--KRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKRDGVFA 114 (329)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEEEeCCEEE
Confidence 46999999999999999999999 999999999999999999987654433211 0000 111235555
Q ss_pred ecCCCCcccchhhhhhchHH--HHHHHHHHHHh---ccCCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcch
Q psy14655 72 LSMGNLITEKSAAIWRGLMV--MQALNKLTVQV---QWGPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMS 144 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~l---~~~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s 144 (261)
+..+... .+.+... .....++++.+ . .+|||||+||++... .......... +|.+++|+.|+..+
T Consensus 115 ~~~g~p~------~~~G~~~~~~i~~~~~l~~l~~~~-w~~DyVliD~~gdv~~ggf~l~i~~~~-ad~VIVVt~pe~~s 186 (329)
T cd02033 115 MELGGPE------VGRGCGGRGIIHGFELLEKLGFHD-WDFDYVLLDFLGDVVCGGFGLPIARDM-AQKVIVVGSNDLQS 186 (329)
T ss_pred ecCCCCe------ecccccchHHHHHHHHHHHccCcc-ccCCEEEEecCCcceeccccchhhhcC-CceEEEeCCchHHH
Confidence 5432211 1121111 11122344443 4 379999999977543 2212222222 88999999999999
Q ss_pred HHHHHH---HHHHHHhC--CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchh
Q psy14655 145 LQVAQR---GYTMFKKL--NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNL 219 (261)
Q Consensus 145 ~~~~~~---~~~~l~~~--~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~ 219 (261)
+..+.+ .++++++. +.+++|+|+||+.. ....+.+.+ .+|.+++. .||
T Consensus 187 i~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~------------~~~ie~~ae----------~lgi~vLg-~IP---- 239 (329)
T cd02033 187 LYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG------------TGEAQAFAA----------HAGIPILA-AIP---- 239 (329)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC------------cchHHHHHH----------HhCCCEEE-ECC----
Confidence 976554 55667666 45689999999531 011112211 14555555 499
Q ss_pred hhhhhccccCCCCCCCCcc
Q psy14655 220 IIKIRNVAYGNSHGHGNTV 238 (261)
Q Consensus 220 ~~~~~~~~~~~a~~~g~~v 238 (261)
++..+.++...|+++
T Consensus 240 ----~D~~V~~a~~~g~~~ 254 (329)
T cd02033 240 ----ADEELRRKSAAYQIV 254 (329)
T ss_pred ----CCHHHHHHHHcCCee
Confidence 777777777777643
No 52
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.87 E-value=3.5e-22 Score=162.11 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=106.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC-------CcccccCCCCCCCCCcCCcccccc--------
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP-------SIPILMNLPDTPLLNKDNLMIPLV-------- 65 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-------- 65 (261)
+++++|||+||||+++++|..+|+.| +||++||+|++.+ ++..+++..+.. ...........
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g--~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEG--KKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPE-IAPNLYREEVDATRRVERA 78 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC--CcEEEEECCCCcccccccCCCchhhhccCChH-HHHHHHHHHHHHHHHhhhc
Confidence 37899999999999999999999999 9999999999984 333333321100 00000111100
Q ss_pred --ccCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCC-CCEEEEeCCCCCChhH---HHHhhhcCCCeEEEEeC
Q psy14655 66 --NYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGP-CDILFIDTPPGTGDTH---LSLIQNLFIDTAIIITI 139 (261)
Q Consensus 66 --~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~-yd~IiiD~~~~~~~~~---~~~~~~~~ad~viiv~~ 139 (261)
..+..+++.+...+.. ...-.+.++++.++ .. ||+||+||||+..... ...+....+|.+++|+.
T Consensus 79 ~~~~~~~~~~~~~~~p~~--------~ell~~~~l~~~l~-~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~ 149 (217)
T cd02035 79 WGGEGGLMLELAAALPGI--------EELASLLAVFREFS-EGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTL 149 (217)
T ss_pred ccchhhhHHhHhccCCCH--------HHHHHHHHHHHHHh-cCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeC
Confidence 0122233333322211 11122677777777 55 9999999999743221 12222212478999999
Q ss_pred CCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 140 PDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 140 ~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
|+..++.++.++++.++..+.+..++|+|++..
T Consensus 150 p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~ 182 (217)
T cd02035 150 PEKLPLYETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 999999999999999999999999999999653
No 53
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.87 E-value=5e-21 Score=144.59 Aligned_cols=105 Identities=30% Similarity=0.389 Sum_probs=93.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|.|+|||+||||++.++|..++++| ++|++||+|+|++++.
T Consensus 3 ~~~~~kgg~gkt~~~~~~a~~~~~~~--~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 3 AVTSGKGGVGKTNISANLALALAKLG--KRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCCC------------------------------------
Confidence 47899999999999999999999999 9999999999876431
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC-C
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-N 159 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~ 159 (261)
|||||+|+||+.+.....++.. ||.+++|+.|+..++..+.++++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~l~~--aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDFFLA--ADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHHHHh--CCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 9999999999999888888887 9999999999999999999999887653 4
Q ss_pred CCeEEEEEcCCC
Q psy14655 160 IPVAGLVMNMNS 171 (261)
Q Consensus 160 ~~~~giv~N~~~ 171 (261)
...+++|+|++.
T Consensus 97 ~~~~~lVvN~~~ 108 (139)
T cd02038 97 VLNFRVVVNRAE 108 (139)
T ss_pred CCCEEEEEeCCC
Confidence 457889999954
No 54
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.87 E-value=2.8e-21 Score=138.81 Aligned_cols=97 Identities=30% Similarity=0.449 Sum_probs=86.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|.|.|||+||||+|.+||..++++| .+|+++|+|++
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~--~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRG--KRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCC--CcEEEEeCCCC-----------------------------------------
Confidence 47899999999999999999999998 99999999998
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHh
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT---MFKK 157 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~---~l~~ 157 (261)
||+||||+||+.+.....++.. ||.+++|+.++..++..+.++++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~l~~--ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNALAA--ADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHHHHH--CCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999998888778877 99999999999999999999887 3332
Q ss_pred --CCCCeEEEEEc
Q psy14655 158 --LNIPVAGLVMN 168 (261)
Q Consensus 158 --~~~~~~giv~N 168 (261)
...+..++|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 24557888876
No 55
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.86 E-value=1.7e-22 Score=163.12 Aligned_cols=212 Identities=22% Similarity=0.260 Sum_probs=130.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc---------C---CccccccccCcee
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK---------D---NLMIPLVNYGVKC 71 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~l~~ 71 (261)
=+|||+||||+++||+.+||++| +|||.|.|||...|+..+++....+++-+ . +.+......++.+
T Consensus 6 YGKGGIGKST~~~Nlsaala~~G--~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~gi~C 83 (273)
T PF00142_consen 6 YGKGGIGKSTTASNLSAALAEMG--KKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFKGILC 83 (273)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT----EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGGGEEE
T ss_pred EcCCCcccChhhhHHHHHHHhcc--ceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccCCcee
Confidence 47999999999999999999999 99999999999988877777655433311 0 0112234568888
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhc--cCCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQ--WGPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~--~~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
+.+|...+ ...+..++-.. ..++++++. ..+||+|++|.-+-. +... +-+..-.|+.+++|++.+.+|+..
T Consensus 84 vEsGGPeP-GvGCaGRGI~~---a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFa-mPir~g~a~evyIVtSge~mslyA 158 (273)
T PF00142_consen 84 VESGGPEP-GVGCAGRGIIT---ALELLEELGAYEDDYDFVLYDVLGDVVCGGFA-MPIREGYAQEVYIVTSGEFMSLYA 158 (273)
T ss_dssp EE---SCT-TSSBHHHHHHH---HHHHHHHTTTSTSTSSEEEEEEESSSSCTTTT-HHHHTTS-SEEEEEEBSSHHHHHH
T ss_pred eccCCCcc-cccccccchhh---hhhhHHhhhhhhcCCceEEEEEEeeeEEeeee-hhhhhccCCEEEEEecCcHHHHHH
Confidence 88776542 22222222111 223334332 156999999985322 1111 222322399999999999999999
Q ss_pred HHHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhh
Q psy14655 148 AQRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKI 223 (261)
Q Consensus 148 ~~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~ 223 (261)
+.++.+.++++ +.++.|+|.|.... .....+.++ +.++ .|.+++. .||
T Consensus 159 ANNI~~~i~~~~~~g~~~l~GiI~N~r~~-------------~~e~~~v~~-fa~~-----~g~~i~~-~iP-------- 210 (273)
T PF00142_consen 159 ANNICKAIKNFADRGGARLGGIICNSRNV-------------DDEEEIVED-FAER-----IGTPIIA-FIP-------- 210 (273)
T ss_dssp HHHHHHHHHHHCTTSS-EEEEEEEE-SSS-------------TTHHHHHHH-HHHH-----HTSEEEE-EE---------
T ss_pred HHHHHHHHHHHhccCCCceEEEEecCCCC-------------CCchHHHHH-HHHH-----cCCcEEE-ecC--------
Confidence 99999988865 34689999995221 112222221 2222 4555555 499
Q ss_pred hccccCCCCCCCCcchhhhhhhhcccc
Q psy14655 224 RNVAYGNSHGHGNTVHHHHVLNLIGEE 250 (261)
Q Consensus 224 ~~~~~~~a~~~g~~v~~~~~~~~~~~~ 250 (261)
++..+.+|...|+||+++++.+..+..
T Consensus 211 r~~~v~~ae~~~~TVie~~P~s~~a~~ 237 (273)
T PF00142_consen 211 RSEIVQRAELYGKTVIEAAPDSEQAQE 237 (273)
T ss_dssp --HHHHHHHHCTS-CCCC-TTSHHHHH
T ss_pred chHHHHHHHHcCCEEEEeCCCcHHHHH
Confidence 999999999999999998877765544
No 56
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.6e-21 Score=153.05 Aligned_cols=211 Identities=24% Similarity=0.299 Sum_probs=141.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc------------CCccccccccCcee
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK------------DNLMIPLVNYGVKC 71 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~ 71 (261)
=+|||.||||++.|+|++||+.| +||++|-|||...++..++|....+++-+ .+.+......++.|
T Consensus 7 YGKGGIGKSTts~N~aAAla~~G--kkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~Gv~C 84 (278)
T COG1348 7 YGKGGIGKSTTSQNLAAALAELG--KKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFGGVKC 84 (278)
T ss_pred ecCCCcCcchhHHHHHHHHHHcC--CeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccCCceEE
Confidence 37999999999999999999999 99999999999988888888444332211 11122234567888
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhc-c-CCCCEEEEeCCCCCChhHHHH----hhhcCCCeEEEEeCCCcchH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQ-W-GPCDILFIDTPPGTGDTHLSL----IQNLFIDTAIIITIPDTMSL 145 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~-~~yd~IiiD~~~~~~~~~~~~----~~~~~ad~viiv~~~~~~s~ 145 (261)
+.+|..-+ ...+..++- ...+ ++++.+. . +..|+||+|..+ +.++.. +.--.||.+++|++.+.+++
T Consensus 85 VEsGGPep-GvGCAGRGV--itai-~~Le~lgaf~~~~DvviyDVLG---DVVCGGFAmPiReg~AdeiyIVtSge~Mal 157 (278)
T COG1348 85 VESGGPEP-GVGCAGRGV--ITAI-NLLEELGAFEEDLDVVIYDVLG---DVVCGGFAMPIREGYADEIYIVTSGEMMAL 157 (278)
T ss_pred eecCCCCC-CCCcccchH--HHHH-HHHHHhCCccccCCEEEEeccC---ceeecceeeehhcccCcEEEEEecCchHHH
Confidence 87765442 222222222 2222 3333332 1 346999999964 322222 22123999999999999999
Q ss_pred HHHHHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhh
Q psy14655 146 QVAQRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLII 221 (261)
Q Consensus 146 ~~~~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~ 221 (261)
..+.+..+-+.++ +.++-|+|.|.... +.... .+..+ .+.+|.+++. .+|
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~-------------~~e~e-----~v~~f-a~~igt~li~-~vP------ 211 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSV-------------DRERE-----LVEAF-AERLGTQLIH-FVP------ 211 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCc-------------ccHHH-----HHHHH-HHHhCCceEe-ecc------
Confidence 9999998887764 46689999996221 11112 22222 2224666655 499
Q ss_pred hhhccccCCCCCCCCcchhhhhhhhccccc
Q psy14655 222 KIRNVAYGNSHGHGNTVHHHHVLNLIGEED 251 (261)
Q Consensus 222 ~~~~~~~~~a~~~g~~v~~~~~~~~~~~~~ 251 (261)
++..+..|...|+||.++++.+-.++..
T Consensus 212 --r~~ivq~aE~~~kTvie~~P~s~~a~~y 239 (278)
T COG1348 212 --RDNIVQKAELNGKTVIEYAPDSNQAEEY 239 (278)
T ss_pred --chHHHHHHHHcCcchhhhCcchhHHHHH
Confidence 9999999999999999999877666553
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.84 E-value=4.5e-21 Score=153.47 Aligned_cols=132 Identities=27% Similarity=0.287 Sum_probs=78.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|.|+|||+||||+|.|+|.+|+++| +||.++|+|..++++..+++...... ....+ ....+....++. .
T Consensus 4 vV~sgKGGvGKSTva~~lA~aLa~~G--~kVg~lD~Di~q~S~~r~l~nr~~~~--~~~gi-~Lp~p~~~~L~~-----~ 73 (261)
T PF09140_consen 4 VVGSGKGGVGKSTVAVNLAVALARMG--KKVGLLDLDIRQPSLPRYLENRAAWA--QRDGI-ELPVPSHFFLPP-----D 73 (261)
T ss_dssp EEE-SSTTTTHHHHHHHHHHHHHCTT----EEEEE--TTT-HHHHHHHHHHHHH--HHHT-------EEE-SSS-----H
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCC--CeEEEEecCCCCCCHHHHHhccchhH--HhcCc-ccCCccceeecc-----c
Confidence 47899999999999999999999999 99999999999999888886332110 00000 000111111111 1
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSL 145 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~ 145 (261)
.......+......|.+++..+. .++||||||||++-+.....+... ||.++.|+..+..++
T Consensus 74 ~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGtd~~lsr~Ahs~--ADtLiTPlNdSfvDf 135 (261)
T PF09140_consen 74 QASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGTDDRLSRVAHSM--ADTLITPLNDSFVDF 135 (261)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SSS-HHHHHHHHT---SEEEEEEESSHHHH
T ss_pred ccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCCCcHHHHHHHHh--CCEEEccCchhHHhH
Confidence 11111222233457888888887 899999999996655555555554 999999988776554
No 58
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.78 E-value=3e-18 Score=144.82 Aligned_cols=211 Identities=20% Similarity=0.267 Sum_probs=151.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcC------------CccccccccC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKD------------NLMIPLVNYG 68 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 68 (261)
+|++.|||+|-||+|.|+|+.++..- +..|+++|+|.+.++...+|+.+...++.+. +..-....++
T Consensus 108 afl~akgg~g~stlA~n~a~~l~~~~-~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~~~~ 186 (366)
T COG4963 108 AFLGAKGGVGTSTLAHNLAKGLAILS-GAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRLASG 186 (366)
T ss_pred EEEeecCCcchHHHHHHHHHHHhhhc-CCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhccCCC
Confidence 47899999999999999999999754 4999999999999988888888766544321 0111122345
Q ss_pred ceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+.+++.-... ..........+..++..++ ..||+||+|.|..+.++....+.. +|.+++|++++..+++.+
T Consensus 187 l~ll~a~~~~------~~~~d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~vL~~--Sd~iviv~e~sl~slR~a 257 (366)
T COG4963 187 LKLLAAPTEL------AKNYDLKTGAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQVLSG--SDEIVIVAEPSLASLRNA 257 (366)
T ss_pred ceeecCCcch------hhhcccccchHHHHHHHhh-ccCCeEEEcCCCccchHHHHHHhc--CCeEEEEecccHHHHHHH
Confidence 5555532222 1122233445777888888 899999999998888999888888 999999999999999999
Q ss_pred HHHHHHHHhCC--CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhcc
Q psy14655 149 QRGYTMFKKLN--IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNV 226 (261)
Q Consensus 149 ~~~~~~l~~~~--~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~ 226 (261)
+++++.+++.+ .+....|+|++....+. + ... ..+.+|.+.+. .+|+ +..
T Consensus 258 k~lld~l~~~r~~~~~p~lv~n~~~~~~~~---------~-~~d----------l~~~~~i~~~~-~~p~-------d~~ 309 (366)
T COG4963 258 KELLDELKRLRPNDPKPILVLNRVGVPKRP---------E-PSD----------LEEILGIESLL-VLPF-------DPA 309 (366)
T ss_pred HHHHHHHHHhCCCCCCceEEeeecCCCCCC---------C-HHH----------HHHHhCCchhc-cccC-------Cch
Confidence 99999999864 44788999996532111 1 111 22335555444 3772 333
Q ss_pred ccCCCCCCCCcchhhhhhhhccc
Q psy14655 227 AYGNSHGHGNTVHHHHVLNLIGE 249 (261)
Q Consensus 227 ~~~~a~~~g~~v~~~~~~~~~~~ 249 (261)
.+.+|.++|+++.+.++.+..++
T Consensus 310 ~~~~A~n~g~~l~E~~~~~~~~k 332 (366)
T COG4963 310 LFGDAANNGRMLSEVDPGSPAAK 332 (366)
T ss_pred hhhhhhccCccccccCCCChHHH
Confidence 44789999999998887765543
No 59
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.77 E-value=4.1e-19 Score=136.94 Aligned_cols=135 Identities=23% Similarity=0.364 Sum_probs=96.6
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----C-------------Ccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----D-------------NLMIP 63 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----~-------------~~~~~ 63 (261)
+|+|.+||+||||+|.|||..||+.| ++|++||+|...+.+..+++.+...++.+ . +.+.+
T Consensus 4 ~v~s~~~g~G~t~~a~~lA~~la~~~--~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~ 81 (157)
T PF13614_consen 4 AVWSPKGGVGKTTLALNLAAALARKG--KKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIYS 81 (157)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT--T-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhcC--CCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhee
Confidence 47899999999999999999999999 99999999999998888888876533321 0 11111
Q ss_pred ccccCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHH-HhhhcCCCeEEEEeCCCc
Q psy14655 64 LVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLS-LIQNLFIDTAIIITIPDT 142 (261)
Q Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~-~~~~~~ad~viiv~~~~~ 142 (261)
....++.+++......... ....+.+..+++.++ +.||+||+|+|+........ ++.. ||.+++|+.++.
T Consensus 82 ~~~~~l~~~~~~~~~~~~~------~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~~~~l~~--~D~ii~v~~~~~ 152 (157)
T PF13614_consen 82 DAHDGLDLLPPPSSPEDLE------ELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDTQAVLEL--ADKIILVVRPDV 152 (157)
T ss_dssp ESSTTEEEE--SSSSHHHH------HHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHHHHHHTT--HSEEEEEEETTH
T ss_pred ccCCCeEEecCCCCCCchh------hcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHHHHHHHH--CCEEEEEECCCc
Confidence 1235677776544332211 123456888888888 79999999999998877654 5655 999999999998
Q ss_pred chHH
Q psy14655 143 MSLQ 146 (261)
Q Consensus 143 ~s~~ 146 (261)
.+++
T Consensus 153 ~s~~ 156 (157)
T PF13614_consen 153 TSIR 156 (157)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8875
No 60
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.74 E-value=1.6e-17 Score=140.76 Aligned_cols=164 Identities=22% Similarity=0.249 Sum_probs=105.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCc--
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLI-- 78 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 78 (261)
+|+++||||||||+|+.+|..+|+.| +|||++..||.. ++...|+.+-....... ...+|+..+..+...
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~-~L~d~l~~~~~~~~~~v-----~~~~~L~a~eid~~~~~ 75 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAH-SLSDVLGQKLGGEPTKV-----EGVPNLSAMEIDPEAEL 75 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTT-HHHHHHTS--BSS-EEE-----TTCSSEEEEE--HHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCc-cHHHHhCCcCCCCCeEe-----cCCCCceeeecCHHHHH
Confidence 37899999999999999999999999 999999999996 67788887422111000 001222222111000
Q ss_pred ---------------c--------cchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH-------------
Q psy14655 79 ---------------T--------EKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------------- 122 (261)
Q Consensus 79 ---------------~--------~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------------- 122 (261)
. .......++....-.+..+.+.+...+||+||+||||.-+-.-
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~ 155 (305)
T PF02374_consen 76 EEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWLD 155 (305)
T ss_dssp HHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHHH
Confidence 0 0000011334444455666666655899999999998543000
Q ss_pred -------------------------------------------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 123 -------------------------------------------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 123 -------------------------------------------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
...+.......+++|+.|+..++..+.++++.+...+
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~g 235 (305)
T PF02374_consen 156 RLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYG 235 (305)
T ss_dssp HHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcC
Confidence 0111111123589999999999999999999999999
Q ss_pred CCeEEEEEcCCCC
Q psy14655 160 IPVAGLVMNMNSV 172 (261)
Q Consensus 160 ~~~~giv~N~~~~ 172 (261)
++.-++|+|++-+
T Consensus 236 i~v~~vVvNrvlp 248 (305)
T PF02374_consen 236 IPVDAVVVNRVLP 248 (305)
T ss_dssp -EEEEEEEEEE-T
T ss_pred CccCeEEEEcccc
Confidence 9999999999643
No 61
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.69 E-value=1.1e-15 Score=116.33 Aligned_cols=144 Identities=18% Similarity=0.216 Sum_probs=89.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-ccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI-PILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
.+.+|||+||||++.+++..+.+.| .+|+++|+|++.+.. ...++- ...+. +... .....+..+|.+.....
T Consensus 3 ~~~G~~GsGKTt~~~~l~~~~~~~g--~~v~ii~~D~~~~~~~~~~~~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~~ 75 (148)
T cd03114 3 GITGVPGAGKSTLIDALITALRARG--KRVAVLAIDPSSPFSGGAILGD--RIRME--RHAS-DPGVFIRSLATRGFLGG 75 (148)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEeCCCCCCcccchhcC--ceEhh--heec-CCCceEEEcCCcCcccc
Confidence 3568999999999999999999999 999999999876422 111211 00110 1111 11112344444422211
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCC
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNI 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 160 (261)
... ...+.++.++..+||+||||| +|.+.....++.. ||.+++|+.|+..+-..+.+. .+++..+.
T Consensus 76 ~~~----------~~~~~~~~~~~~~~D~iiIDt-aG~~~~~~~~~~~--Ad~~ivv~tpe~~D~y~~~k~-~~~~~~~~ 141 (148)
T cd03114 76 LSR----------ATPEVIRVLDAAGFDVIIVET-VGVGQSEVDIASM--ADTTVVVMAPGAGDDIQAIKA-GIMEIADI 141 (148)
T ss_pred cch----------hHHHHHHHHHhcCCCEEEEEC-CccChhhhhHHHh--CCEEEEEECCCchhHHHHhhh-hHhhhcCE
Confidence 111 123333444335899999999 6777776667766 999999999996555555553 45555543
Q ss_pred CeEEEEEcCC
Q psy14655 161 PVAGLVMNMN 170 (261)
Q Consensus 161 ~~~giv~N~~ 170 (261)
+++|++
T Consensus 142 ----~~~~k~ 147 (148)
T cd03114 142 ----VVVNKA 147 (148)
T ss_pred ----EEEeCC
Confidence 788874
No 62
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.64 E-value=3.1e-15 Score=126.64 Aligned_cols=169 Identities=22% Similarity=0.258 Sum_probs=110.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCC--CCC-----CCCcCCc-----cccc----
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLP--DTP-----LLNKDNL-----MIPL---- 64 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~--~~~-----~~~~~~~-----~~~~---- 64 (261)
.++++||||||||+|+.+|..+|+.| ++||+|-.||.+ ++...|+.+ ..+ ++...+. +...
T Consensus 5 v~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAh-sL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v 81 (322)
T COG0003 5 VFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAH-SLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEV 81 (322)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCC-chHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHH
Confidence 37899999999999999999999999 999999999996 677888773 111 1100000 0000
Q ss_pred cccCceeecCCC--CcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh------------HHH------
Q psy14655 65 VNYGVKCLSMGN--LITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT------------HLS------ 124 (261)
Q Consensus 65 ~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~------------~~~------ 124 (261)
...--..++.+. ..........++....-.+.++.+.+...+||+||+||+|.-.-. ...
T Consensus 82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~~~ 161 (322)
T COG0003 82 KDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKPRR 161 (322)
T ss_pred HHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhhHH
Confidence 000001111111 111233344566667777888888887788999999999854300 000
Q ss_pred -Hh--------------------------------------hhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEE
Q psy14655 125 -LI--------------------------------------QNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGL 165 (261)
Q Consensus 125 -~~--------------------------------------~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gi 165 (261)
.+ ....-..+.+|..|+..++.++.+.++.+...+++.-++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~v 241 (322)
T COG0003 162 KRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAV 241 (322)
T ss_pred HHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCchhee
Confidence 00 000012357777899999999999999999999999999
Q ss_pred EEcCCCC
Q psy14655 166 VMNMNSV 172 (261)
Q Consensus 166 v~N~~~~ 172 (261)
++|++.+
T Consensus 242 i~n~~~p 248 (322)
T COG0003 242 IVNKILP 248 (322)
T ss_pred eeecccc
Confidence 9998664
No 63
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.62 E-value=1.1e-15 Score=111.30 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=76.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
++++|||+||||++.++|..++++| ++|++||+|+ +++...+....... ..++-.+......
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l~~~g--~~V~~id~D~--~~~~~~~~~~~~~~--------------~~~i~~g~~~~~~ 64 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAEKG--KPVLAIDADP--DDLPERLSVEVGEI--------------KLLLVMGMGRPGG 64 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCc--hhhHHHHhhccCCc--------------eEEEEecccccCC
Confidence 5678999999999999999999999 9999999999 23434443332110 0001111111111
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEE
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIII 137 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv 137 (261)
...... ....+++++.++...+|||+|+||++|+++....+... +|.+++|
T Consensus 65 ~g~~~~---~n~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~~~~--~d~vv~v 115 (116)
T cd02034 65 EGCYCP---ENALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGTAEG--VDLLVVV 115 (116)
T ss_pred CCCEeh---hhHHHHHHHHHeEccCCCEEEEecHHHHHHHHhhcccc--CCEEEEe
Confidence 111111 01267888888743899999999999999988887776 8988886
No 64
>KOG2825|consensus
Probab=99.58 E-value=9.3e-15 Score=116.38 Aligned_cols=166 Identities=20% Similarity=0.226 Sum_probs=106.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC--CCCC--CcCCccccccccCcee--ec--
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD--TPLL--NKDNLMIPLVNYGVKC--LS-- 73 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~l~~--~~-- 73 (261)
|+++||||||||.++.||..||+.+ .+||+|-.||.. +++..|+.+= .+.. ..++...-...+++.+ ++
T Consensus 23 fVGGKGGVGKTTcs~sLAvqla~~r--~~vLiISTDPAH-NlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~~~~m 99 (323)
T KOG2825|consen 23 FVGGKGGVGKTTCSCSLAVQLAKVR--ESVLIISTDPAH-NLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGDMPEM 99 (323)
T ss_pred EEcCcCCcCccchhhHHHHHHhccC--CceEEeecCccc-chHHHHHHHhcCCCccccChhhheeeecCCchhhhhhHHH
Confidence 7899999999999999999999999 999999999997 4555554321 1110 0000000000011000 00
Q ss_pred ----------CCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH---------------------
Q psy14655 74 ----------MGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH--------------------- 122 (261)
Q Consensus 74 ----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~--------------------- 122 (261)
.|...-.......++.+..-.+.+.+..++.-+||.||+||.|.-. ..
T Consensus 100 ~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGH-TLRlL~fP~~lek~lgKl~~l~~ 178 (323)
T KOG2825|consen 100 FGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGH-TLRLLQFPTTLEKGLGKLLSLKN 178 (323)
T ss_pred hhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcc-eehhhccchHHHHHHHHHHHHHH
Confidence 0000001111222444555567777777876789999999998432 11
Q ss_pred -------------------------------------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEE
Q psy14655 123 -------------------------------------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGL 165 (261)
Q Consensus 123 -------------------------------------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gi 165 (261)
...+....+...|+|..++..|+.+++++++.+.+.+++...+
T Consensus 179 k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~idthnI 258 (323)
T KOG2825|consen 179 KIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGIDTHNI 258 (323)
T ss_pred HHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCCcccce
Confidence 0001111155678899999999999999999999999999999
Q ss_pred EEcCCC
Q psy14655 166 VMNMNS 171 (261)
Q Consensus 166 v~N~~~ 171 (261)
|+|+.-
T Consensus 259 IVNQLL 264 (323)
T KOG2825|consen 259 IVNQLL 264 (323)
T ss_pred eeeecc
Confidence 999754
No 65
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.53 E-value=3.5e-13 Score=104.84 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=94.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCC--------cccccCCCCCCCCCcCCccccccccCceeec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPS--------IPILMNLPDTPLLNKDNLMIPLVNYGVKCLS 73 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (261)
|++..+|+||||++.+||.+|+++| +||.++..-..... +...++..... . .. +. +..
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g--~~V~~~kP~~~~~~~~d~d~~~i~~~~~~~~~~--~------~~---~~-~~~ 67 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG--YSVGYYKPVQTGIEKTNSDALLLQNISGTALDW--D------EV---NP-YAF 67 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC--CcEEEEEeeeeCCCCCchHHHHHHHHcCCCCch--h------cc---CC-eee
Confidence 6789999999999999999999999 99999753332211 00011110000 0 00 00 000
Q ss_pred CCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh------hHHHHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 74 MGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD------THLSLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~------~~~~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
.....+...............+.+.++.+. ++||+||||+|++... .....+... .+.+|+|+.+...++..
T Consensus 68 ~~~~~p~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~-~~~vilV~~~~~~~~~~ 145 (166)
T TIGR00347 68 ALPLSPHIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL-QLPVILVVRVKLGTINH 145 (166)
T ss_pred CCCCChHHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHH
Confidence 110000000110010122234677777777 8999999999977532 122222222 66799999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEEc
Q psy14655 148 AQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 148 ~~~~~~~l~~~~~~~~giv~N 168 (261)
+....+.+++.+.++.|+|+|
T Consensus 146 ~~~~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 146 TLLTVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHHHHCCCCeEEEEeC
Confidence 999999999999999999998
No 66
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.52 E-value=1.7e-13 Score=96.42 Aligned_cols=91 Identities=35% Similarity=0.515 Sum_probs=75.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
++++++|+||||++.++|..|++.| ++|+++|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g--~~v~~~~---------------------------------------------- 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRG--KRVLLID---------------------------------------------- 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEC----------------------------------------------
Confidence 4567789999999999999999999 9999999
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH---HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH--
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH---LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFK-- 156 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~---~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~-- 156 (261)
|+||+|++++.+... ...... +|.+++|+.++..++.......+...
T Consensus 35 --------------------------d~iivD~~~~~~~~~~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~ 86 (99)
T cd01983 35 --------------------------DYVLIDTPPGLGLLVLLCLLALLA--ADLVIIVTTPEALAVLGARRLTEVVLEL 86 (99)
T ss_pred --------------------------CEEEEeCCCCccchhhhhhhhhhh--CCEEEEecCCchhhHHHHHHHHHHHHHh
Confidence 999999999988776 455555 99999999999999999998864333
Q ss_pred -hCCCCeEEEEEc
Q psy14655 157 -KLNIPVAGLVMN 168 (261)
Q Consensus 157 -~~~~~~~giv~N 168 (261)
..+....++++|
T Consensus 87 ~~~~~~~~~vv~N 99 (99)
T cd01983 87 AIEGLRPVGVVVN 99 (99)
T ss_pred hccCCceEEEEeC
Confidence 234446777766
No 67
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.46 E-value=3.3e-13 Score=90.03 Aligned_cols=79 Identities=46% Similarity=0.864 Sum_probs=63.8
Q ss_pred CEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccc
Q psy14655 108 DILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYEN 186 (261)
Q Consensus 108 d~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~ 186 (261)
||+|+|+|||.++.....+...+.+..++|+.|...|...+.+.++++++.+.+++|+|-||....|+.|.+...+|.+
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~ 80 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGK 80 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCC
Confidence 8999999999999988888887789999999999999999999999999999999999999999999999999999874
No 68
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.44 E-value=1.8e-12 Score=108.30 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=81.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcc-cccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIP-ILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
+++|+||||++++||..+++.| ++|++||+|++..... .+.... ...++.+++.+....+
T Consensus 79 G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~r~~a~~ql~~~~--------------~~~~i~~~~~~~~~dp--- 139 (272)
T TIGR00064 79 GVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTFRAAAIEQLEEWA--------------KRLGVDVIKQKEGADP--- 139 (272)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCCCHHHHHHHHHHH--------------HhCCeEEEeCCCCCCH---
Confidence 7999999999999999999999 9999999998653211 000000 0112333322211100
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHH------HHhhhc------CCCeEEEEeCCCcchHHHHHHH
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHL------SLIQNL------FIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~------~~~~~~------~ad~viiv~~~~~~s~~~~~~~ 151 (261)
.....+.++....++||+|||||||....... ...... .+|.+++|++.+ .....+...
T Consensus 140 --------~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~~~~~~~~ 210 (272)
T TIGR00064 140 --------AAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TGQNALEQA 210 (272)
T ss_pred --------HHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CCHHHHHHH
Confidence 01122223332227899999999986642111 001111 178999999986 455555554
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
....+.. +..|+|+|+.+.
T Consensus 211 ~~f~~~~--~~~g~IlTKlDe 229 (272)
T TIGR00064 211 KVFNEAV--GLTGIILTKLDG 229 (272)
T ss_pred HHHHhhC--CCCEEEEEccCC
Confidence 4444444 458999999664
No 69
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.44 E-value=1.9e-12 Score=105.20 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=39.6
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPIL 46 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~ 46 (261)
+|.++||||||||+|++||.++++.| ++|++||+||+++++..+
T Consensus 6 ~i~~~KGGvGKSt~a~~la~~l~~~g--~~vl~iD~D~~n~~~~~~ 49 (241)
T PRK13886 6 MVLQGKGGVGKSFIAATIAQYKASKG--QKPLCIDTDPVNATFEGY 49 (241)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhCC--CCEEEEECCCCCchhhhH
Confidence 36789999999999999999999999 999999999998765444
No 70
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.40 E-value=8.1e-12 Score=97.82 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=84.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
++.++.|+||||++.++|..+++.| .+|++||+|++.+.....+..... ..++.+++.....
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~-------------~~~~~~~~~~~~~--- 65 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGE-------------QVGVPVFEEGEGK--- 65 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcc-------------cCCeEEEecCCCC---
Confidence 4568999999999999999999999 999999999987654332221000 1133333322111
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--hHHHH----hhhcCCCeEEEEeCCCcchHHHHHHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--THLSL----IQNLFIDTAIIITIPDTMSLQVAQRGYTMF 155 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--~~~~~----~~~~~ad~viiv~~~~~~s~~~~~~~~~~l 155 (261)
...+.+.+.+......+||+||+|+++.... ..... ......|.+++|+++. ..........+..
T Consensus 66 --------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~~ 136 (173)
T cd03115 66 --------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAFN 136 (173)
T ss_pred --------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHHH
Confidence 1112233444433337899999999986531 11111 1111278899999874 3333333333333
Q ss_pred HhCCCCeEEEEEcCCCC
Q psy14655 156 KKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 156 ~~~~~~~~giv~N~~~~ 172 (261)
+..+ ..++|+|+.+.
T Consensus 137 ~~~~--~~~viltk~D~ 151 (173)
T cd03115 137 EALG--ITGVILTKLDG 151 (173)
T ss_pred hhCC--CCEEEEECCcC
Confidence 4444 58999999663
No 71
>PRK10867 signal recognition particle protein; Provisional
Probab=99.37 E-value=6.2e-12 Score=110.87 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=86.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
++.+..|+||||++++||.+|+++ | ++|++||+|.+.+.....+..-. ...++.+++.+....
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~eQL~~~a-------------~~~gv~v~~~~~~~d- 167 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAIEQLKTLG-------------EQIGVPVFPSGDGQD- 167 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHHHHHHHHH-------------hhcCCeEEecCCCCC-
Confidence 456799999999999999999998 8 99999999999875422221000 112344443321110
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhHHHH----hhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTHLSL----IQNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~~~~----~~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
......+.++..+..+||+|||||++... ...... ......+.+++|+++.. -.++....+.
T Consensus 168 ----------p~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~--gq~av~~a~~ 235 (433)
T PRK10867 168 ----------PVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT--GQDAVNTAKA 235 (433)
T ss_pred ----------HHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc--HHHHHHHHHH
Confidence 11122344444443689999999998653 221111 11112678899988643 3444455555
Q ss_pred HHhCCCCeEEEEEcCCCC
Q psy14655 155 FKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~~ 172 (261)
+.+ .+++.|+|+|+.+.
T Consensus 236 F~~-~~~i~giIlTKlD~ 252 (433)
T PRK10867 236 FNE-ALGLTGVILTKLDG 252 (433)
T ss_pred HHh-hCCCCEEEEeCccC
Confidence 543 35668999999664
No 72
>PRK13768 GTPase; Provisional
Probab=99.36 E-value=6.6e-12 Score=104.08 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=36.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
++.++||+||||++.+++.+++.+| ++|++||+||+...+
T Consensus 6 ~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 6 FFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNLDPAVEYL 45 (253)
T ss_pred EEECCCCccHHHHHHHHHHHHHhcC--CceEEEECCCccccC
Confidence 5678899999999999999999999 999999999986443
No 73
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.32 E-value=1.5e-11 Score=108.46 Aligned_cols=142 Identities=17% Similarity=0.206 Sum_probs=84.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
++++..|+||||++++||.+++ +.| ++|++||+|.+.+.....+.... ...++.+++.+....+
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R~~a~~QL~~~a-------------~~~gvp~~~~~~~~~P 167 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYRPAAIEQLKVLG-------------QQVGVPVFALGKGQSP 167 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccchHHHHHHHHHH-------------HhcCCceEecCCCCCH
Confidence 5678999999999999999987 578 99999999998865322111100 0112222322110000
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhHHHHh----hhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTHLSLI----QNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~~~~~----~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
.....+.++.+...+||+|||||++... .....-+ .....|.+++|+.+. .-.++....+.
T Consensus 168 -----------~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~--tgq~~~~~a~~ 234 (428)
T TIGR00959 168 -----------VEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM--TGQDAVNTAKT 234 (428)
T ss_pred -----------HHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc--chHHHHHHHHH
Confidence 1112344444433789999999998652 2221111 112268889999864 23455555555
Q ss_pred HHhCCCCeEEEEEcCCCC
Q psy14655 155 FKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~~ 172 (261)
+.+ .+++.|+|+|+.+.
T Consensus 235 f~~-~v~i~giIlTKlD~ 251 (428)
T TIGR00959 235 FNE-RLGLTGVVLTKLDG 251 (428)
T ss_pred HHh-hCCCCEEEEeCccC
Confidence 542 34568999998663
No 74
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.30 E-value=1.9e-11 Score=99.63 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=91.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccc---cc--cCceeec-CC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPL---VN--YGVKCLS-MG 75 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~l~~~~-~~ 75 (261)
|++.-.|+|||+++++|+..|+++| .+|.++- |......... .+. +...+... .. ..+..+- ..
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l~~~g--~~v~~~K--Pv~~g~~~~~-~~~-----d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQALREAG--YSVAGYK--PVQSGCEETD-RNG-----DALALQRLSGLPLDYEDVNPYRFEE 73 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHcC--CceEEEe--eEecCCCCCC-CcH-----HHHHHHHHcCCCCChhhcCceeeCC
Confidence 6778899999999999999999999 9998853 2211100000 000 00000000 00 0000000 00
Q ss_pred CCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhh-----cCCCeEEEEeCCCcchHHHHHH
Q psy14655 76 NLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQN-----LFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~-----~~ad~viiv~~~~~~s~~~~~~ 150 (261)
...+.............+.+.+.++.++ ++||+||||++++........+.. ..-.-+++|+.++..++..+..
T Consensus 74 ~~sp~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~ 152 (222)
T PRK00090 74 PLSPHLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLL 152 (222)
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHH
Confidence 0000000000111122345677777777 899999999998863221111111 0023488999999999998888
Q ss_pred HHHHHHhCCCCeEEEEEcCCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~ 171 (261)
.++.++..+.++.|+|+|+++
T Consensus 153 ~i~~l~~~~~~i~gvIlN~~~ 173 (222)
T PRK00090 153 TLEAIRARGLPLAGWVANGIP 173 (222)
T ss_pred HHHHHHHCCCCeEEEEEccCC
Confidence 888888888899999999954
No 75
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.29 E-value=4e-11 Score=105.23 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=83.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
+.+..|+||||+++.||.++++.| ++|++|++|++++.....+..... ..++.+.......
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R~aA~eQLk~~a~-------------~~~vp~~~~~~~~---- 165 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFRAGAFDQLKQNAT-------------KARIPFYGSYTES---- 165 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccchhHHHHHHHHhh-------------ccCCeEEeecCCC----
Confidence 456899999999999999999999 999999999998755443321110 0122222111000
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--hHH----HHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--THL----SLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--~~~----~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
+......+.++.++..+||+|||||++.... ... ........|.+++|+++... ..+....+.+.
T Consensus 166 -------dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G--q~a~~~a~~F~ 236 (429)
T TIGR01425 166 -------DPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG--QAAEAQAKAFK 236 (429)
T ss_pred -------CHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC--hhHHHHHHHHH
Confidence 0011123344444436899999999976532 111 11112226789999986432 22233344444
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
+ ..++.|+|+|+.+.
T Consensus 237 ~-~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 237 D-SVDVGSVIITKLDG 251 (429)
T ss_pred h-ccCCcEEEEECccC
Confidence 3 23568899998775
No 76
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.24 E-value=1.5e-10 Score=98.67 Aligned_cols=138 Identities=16% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+..|+||||++++||..++..| .+|+++|+|+++......+.. .....++.+++......+
T Consensus 121 GpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D~~r~~a~eql~~-------------~a~~~~i~~~~~~~~~dp---- 181 (318)
T PRK10416 121 GVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGDTFRAAAIEQLQV-------------WGERVGVPVIAQKEGADP---- 181 (318)
T ss_pred CCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCccchhhHHHHHH-------------HHHHcCceEEEeCCCCCH----
Confidence 5789999999999999999998 999999999976431110000 001113334433211111
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh------HHHHhh------hcCCCeEEEEeCCCcchHHHHHHHH
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT------HLSLIQ------NLFIDTAIIITIPDTMSLQVAQRGY 152 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~------~~~~~~------~~~ad~viiv~~~~~~s~~~~~~~~ 152 (261)
.......+..... ++||+|||||||..... ...... ....+.+++|+.++. ....+....
T Consensus 182 ------a~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~-g~~~~~~a~ 253 (318)
T PRK10416 182 ------ASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT-GQNALSQAK 253 (318)
T ss_pred ------HHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-ChHHHHHHH
Confidence 0111222223334 89999999999865411 111111 112678889988773 344444433
Q ss_pred HHHHhCCCCeEEEEEcCCC
Q psy14655 153 TMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 153 ~~l~~~~~~~~giv~N~~~ 171 (261)
...+. .+..|+|+|+.+
T Consensus 254 ~f~~~--~~~~giIlTKlD 270 (318)
T PRK10416 254 AFHEA--VGLTGIILTKLD 270 (318)
T ss_pred HHHhh--CCCCEEEEECCC
Confidence 33333 356899999965
No 77
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.21 E-value=1e-10 Score=103.45 Aligned_cols=139 Identities=16% Similarity=0.197 Sum_probs=83.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
+.+..|+||||++++||..|.+.| ++|++|++|...+.....+..-. ...++.+.....
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R~aa~eQL~~la-------------~~~gvp~~~~~~------ 158 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYRPAAYDQLKQLA-------------EKIGVPFYGDPD------ 158 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCCHHHHHHHHHHH-------------HHcCCcEEecCC------
Confidence 457899999999999999999999 99999999998764322111100 000111111100
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
.......+.+.++.+. .+|+|||||++...... ........+|.+++|++++.. .++....+.+.
T Consensus 159 -----~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~ 229 (437)
T PRK00771 159 -----NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFH 229 (437)
T ss_pred -----ccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHH
Confidence 0112223455666654 46999999997654211 111112228999999997664 23333344433
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
+ .+++.|+|+|+.+.
T Consensus 230 ~-~l~i~gvIlTKlD~ 244 (437)
T PRK00771 230 E-AVGIGGIIITKLDG 244 (437)
T ss_pred h-cCCCCEEEEecccC
Confidence 2 24568999999764
No 78
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.19 E-value=2.5e-10 Score=96.27 Aligned_cols=151 Identities=16% Similarity=0.203 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeec--------------------
Q psy14655 14 TTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLS-------------------- 73 (261)
Q Consensus 14 ~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------- 73 (261)
+|+++|..+|+.| +|||+||+||+. ++..+||.+-........ ..+++....
T Consensus 1 ~a~a~a~~~a~~g--~~vllv~~Dp~~-~l~~~~~~~~~~~~~~v~-----~~~~L~~~~id~~~~~~~~~~~~~~~~~~ 72 (284)
T TIGR00345 1 ISCATAIRLAEQG--KKVLLVSTDPAH-SLSDVFEQEIGHTPTKVT-----GVENLSAVEIDPQAALEEYRAKLVEQIKG 72 (284)
T ss_pred CHHHHHHHHHHCC--CeEEEEECCCCC-CHHHHhCCccCCCCeecc-----CCCCceEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4789999999999 999999999997 678888764221110000 011222111
Q ss_pred ---CCCCcccc--hhhhhhchHHHHHHHHHHHHhcc--CCCCEEEEeCCCCCChhH------------------------
Q psy14655 74 ---MGNLITEK--SAAIWRGLMVMQALNKLTVQVQW--GPCDILFIDTPPGTGDTH------------------------ 122 (261)
Q Consensus 74 ---~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~--~~yd~IiiD~~~~~~~~~------------------------ 122 (261)
.+...... .....++....-.+.++.+.+.. .+||+||+||||.-+-.-
T Consensus 73 ~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~~yD~iVvDtaPtghtLrlL~lP~~l~~~l~~~~~~~~~~~~ 152 (284)
T TIGR00345 73 NLPDGDMLGDQLEGAALSPGIDEIAAFDEFLKHMTDAENEFDVVIFDTAPTGHTLRLLQLPEVLSSFLEKFIKIRSKLGP 152 (284)
T ss_pred hccccccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhccCCEEEECCCChHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11000000 00012344444445555555542 689999999998543000
Q ss_pred ----------------------------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 123 ----------------------------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 123 ----------------------------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
...+.......+++|+.|+..++.++.++++.+...+.+..++|+|++..
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~ 230 (284)
T TIGR00345 153 MLKLFMGAGESDEALEKLEELKEQIEAAREILSDPERTSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLP 230 (284)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcC
Confidence 00011110234899999999999999999999999999999999999664
No 79
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.14 E-value=2.8e-10 Score=98.15 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=83.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-ccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI-PILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
-+.+|+||||+++.||..+..+| ++|+++++|+++... ..+.... ...++.++...
T Consensus 247 VGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~ya--------------e~lgipv~v~~------- 303 (436)
T PRK11889 247 IGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYV--------------KTIGFEVIAVR------- 303 (436)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHh--------------hhcCCcEEecC-------
Confidence 45699999999999999999999 999999999986322 1111100 01122222211
Q ss_pred hhhhhchHHHHHHHHHHHHhcc-CCCCEEEEeCCCCCChh------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQW-GPCDILFIDTPPGTGDT------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMF 155 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~-~~yd~IiiD~~~~~~~~------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l 155 (261)
....+.+.+..++. .+||+|||||++..... ....+.....+.+++|++++. .-.++...++.+
T Consensus 304 --------d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt-k~~d~~~i~~~F 374 (436)
T PRK11889 304 --------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEIITNF 374 (436)
T ss_pred --------CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc-ChHHHHHHHHHh
Confidence 11235566666541 36999999999764311 112222222577888877643 334445666666
Q ss_pred HhCCCCeEEEEEcCCCC
Q psy14655 156 KKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 156 ~~~~~~~~giv~N~~~~ 172 (261)
.. .++-++|+++.+.
T Consensus 375 ~~--~~idglI~TKLDE 389 (436)
T PRK11889 375 KD--IHIDGIVFTKFDE 389 (436)
T ss_pred cC--CCCCEEEEEcccC
Confidence 65 4568899999654
No 80
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.13 E-value=2.3e-09 Score=91.17 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=84.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcc-cccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIP-ILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
+.+++|+||||++..++..+.+.| .+|.+|++|++.+... .+++-.. .+. .....++..+.+...... .
T Consensus 39 i~G~~G~GKttl~~~l~~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-~ 108 (300)
T TIGR00750 39 ITGTPGAGKSTLLEALGMELRRRG--LKVAVIAVDPSSPFTGGSILGDRT--RMQ-----RLATDPGAFIRSMPTRGH-L 108 (300)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCCcchhhhcccch--hhh-----hcccCCCceeeecCcccc-c
Confidence 458899999999999999999999 9999999999875321 1111110 000 011122332322211100 0
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCC
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIP 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~ 161 (261)
.. ......+.++.+...+||+||+||++ .++........ +|.++++..|.. -.++..+...+.+ .+
T Consensus 109 ~~-------~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i~~~--aD~i~vv~~~~~--~~el~~~~~~l~~--~~ 174 (300)
T TIGR00750 109 GG-------LSQATRELILLLDAAGYDVIIVETVG-VGQSEVDIANM--ADTFVVVTIPGT--GDDLQGIKAGLME--IA 174 (300)
T ss_pred cc-------hhHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHHHHh--hceEEEEecCCc--cHHHHHHHHHHhh--hc
Confidence 00 01233444555544789999999995 65555566665 888888876553 2333333333322 22
Q ss_pred eEEEEEcCCCC
Q psy14655 162 VAGLVMNMNSV 172 (261)
Q Consensus 162 ~~giv~N~~~~ 172 (261)
.-+|+|+.+.
T Consensus 175 -~ivv~NK~Dl 184 (300)
T TIGR00750 175 -DIYVVNKADG 184 (300)
T ss_pred -cEEEEEcccc
Confidence 2489999764
No 81
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.10 E-value=6.6e-10 Score=95.53 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=79.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
|++. .|+||||+++.||..+.++| ++|.+|++|+++......+..... ..++.+...
T Consensus 211 lvGp-tGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae-------------~lgvpv~~~------- 267 (407)
T PRK12726 211 LIGQ-TGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYAD-------------KLDVELIVA------- 267 (407)
T ss_pred EECC-CCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhh-------------cCCCCEEec-------
Confidence 4454 59999999999999999999 999999999997533221111000 011111111
Q ss_pred hhhhhhchHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCC--hhHHH----HhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTG--DTHLS----LIQNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~-~~~yd~IiiD~~~~~~--~~~~~----~~~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
.....+.+.+..++ ..+||+|||||++... ..... .......+.+++|++++. ...++...++.
T Consensus 268 --------~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~-~~~d~~~i~~~ 338 (407)
T PRK12726 268 --------TSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM-KSADVMTILPK 338 (407)
T ss_pred --------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc-cHHHHHHHHHh
Confidence 01223455555553 2579999999997642 11111 111111466677776643 33334444444
Q ss_pred HHhCCCCeEEEEEcCCCC
Q psy14655 155 FKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~~ 172 (261)
+. .+++-++|+++.+.
T Consensus 339 f~--~l~i~glI~TKLDE 354 (407)
T PRK12726 339 LA--EIPIDGFIITKMDE 354 (407)
T ss_pred cC--cCCCCEEEEEcccC
Confidence 44 34568999999654
No 82
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.01 E-value=2e-08 Score=75.15 Aligned_cols=99 Identities=20% Similarity=0.174 Sum_probs=77.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
|+.++| +|||+++..++..|.++| .+|..+....+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~~~--~~v~~~kp~~~------------------------------------------ 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKEKG--YRVAPLKPVQT------------------------------------------ 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHHCC--CeEEEEecCCC------------------------------------------
Confidence 556777 999999999999999999 99999988776
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMF 155 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l 155 (261)
+|++|++.++|+. ......+... -.-+++|..++..++.++...++.+
T Consensus 39 -------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~-~~~vllV~~~~~g~i~~a~~~~~~l 92 (134)
T cd03109 39 -------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKEL-NLPAILVTSAGLGSINHAFLTIEAA 92 (134)
T ss_pred -------------------------CCEEEEECCCccccCCCCCCCHHHHHHHh-CCCEEEEEcCCCCcHhHHHHHHHHH
Confidence 4777777765553 1112222221 2247899999999999999999999
Q ss_pred HhCCCCeEEEEEcCCC
Q psy14655 156 KKLNIPVAGLVMNMNS 171 (261)
Q Consensus 156 ~~~~~~~~giv~N~~~ 171 (261)
+..+..+.+++.|+..
T Consensus 93 ~~~g~~i~gvi~N~~~ 108 (134)
T cd03109 93 RIKGIILNGVLGNVIV 108 (134)
T ss_pred HhcCCceeEEEEccCC
Confidence 9999999999999854
No 83
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.01 E-value=2.3e-09 Score=92.64 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=86.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhhh
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAI 85 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (261)
=-|+||||+|.-||.+|.++| +||++|-||..++..-.-+..-. ..-++.+++.+...
T Consensus 108 LQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpAA~eQL~~La-------------~q~~v~~f~~~~~~------- 165 (451)
T COG0541 108 LQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPAAIEQLKQLA-------------EQVGVPFFGSGTEK------- 165 (451)
T ss_pred ccCCChHhHHHHHHHHHHHcC--CceEEEecccCChHHHHHHHHHH-------------HHcCCceecCCCCC-------
Confidence 359999999999999999998 99999999999986422221100 11133444432111
Q ss_pred hhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhH----HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 86 WRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTH----LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~----~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
...+-.++.++..+...||+||+||.+-.. ... ..+-.....|.+++|++. ..=.++....+.+.+ .
T Consensus 166 ----~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa--m~GQdA~~~A~aF~e-~ 238 (451)
T COG0541 166 ----DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA--MIGQDAVNTAKAFNE-A 238 (451)
T ss_pred ----CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec--ccchHHHHHHHHHhh-h
Confidence 111234566777765789999999997653 211 122222227899999873 223444455555554 3
Q ss_pred CCeEEEEEcCCCC
Q psy14655 160 IPVAGLVMNMNSV 172 (261)
Q Consensus 160 ~~~~giv~N~~~~ 172 (261)
+++.|+|+++.+.
T Consensus 239 l~itGvIlTKlDG 251 (451)
T COG0541 239 LGITGVILTKLDG 251 (451)
T ss_pred cCCceEEEEcccC
Confidence 4678899998664
No 84
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.98 E-value=3.5e-09 Score=94.67 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=74.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
-+.+|+||||++.+||..+++.+.+++|.+|++|.+.....+.+..... ..++.+...
T Consensus 356 VGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~-------------iLgv~v~~a--------- 413 (559)
T PRK12727 356 VGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGR-------------QLGIAVHEA--------- 413 (559)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhc-------------ccCceeEec---------
Confidence 3678999999999999998876323899999999986432221111000 001111110
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-H-HH---Hhhh--cCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-H-LS---LIQN--LFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~-~~---~~~~--~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
.....+...++.+ .+||+|||||++..... . .. .+.. ...+.++++..+ +..+....++.+.
T Consensus 414 ------~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts---s~~Dl~eii~~f~ 482 (559)
T PRK12727 414 ------DSAESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA---HFSDLDEVVRRFA 482 (559)
T ss_pred ------CcHHHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC---ChhHHHHHHHHHH
Confidence 0112345555554 47999999999754211 1 10 1111 003344444433 3444455566665
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
.. +..|+|+|+.+.
T Consensus 483 ~~--~~~gvILTKlDE 496 (559)
T PRK12727 483 HA--KPQGVVLTKLDE 496 (559)
T ss_pred hh--CCeEEEEecCcC
Confidence 54 458999999653
No 85
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.95 E-value=2.2e-08 Score=85.71 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=84.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcc-cccCCCCCCCCCcCCcccc-ccccCceeecCCCCccc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIP-ILMNLPDTPLLNKDNLMIP-LVNYGVKCLSMGNLITE 80 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 80 (261)
+.+-.|+||||++..|+..+...| .+|.+|..||+.+... .++|-.. -... ...++..+.+.+....
T Consensus 61 i~G~~GaGKSTl~~~l~~~l~~~g--~~v~vi~~Dp~s~~~~gallgd~~--------r~~~~~~~~~~~~r~~~~~~~- 129 (332)
T PRK09435 61 ITGVPGVGKSTFIEALGMHLIEQG--HKVAVLAVDPSSTRTGGSILGDKT--------RMERLSRHPNAFIRPSPSSGT- 129 (332)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeCCCccccchhhhchHh--------HHHhhcCCCCeEEEecCCccc-
Confidence 356689999999999999999999 9999999999875321 1222110 0000 1122323333221110
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCC
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~ 159 (261)
.......+.+.+..+...+||+|||||++-- .....+... ||.+++|+. +...++..... ..++..+
T Consensus 130 -------l~~~a~~~~~~~~~~~~~g~d~viieT~Gv~-qs~~~i~~~--aD~vlvv~~p~~gd~iq~~k~--gi~E~aD 197 (332)
T PRK09435 130 -------LGGVARKTRETMLLCEAAGYDVILVETVGVG-QSETAVAGM--VDFFLLLQLPGAGDELQGIKK--GIMELAD 197 (332)
T ss_pred -------ccchHHHHHHHHHHHhccCCCEEEEECCCCc-cchhHHHHh--CCEEEEEecCCchHHHHHHHh--hhhhhhh
Confidence 0012234555555565578999999999643 333345555 999999987 44455544443 1233332
Q ss_pred CCeEEEEEcCCCC
Q psy14655 160 IPVAGLVMNMNSV 172 (261)
Q Consensus 160 ~~~~giv~N~~~~ 172 (261)
-+|+|+.+.
T Consensus 198 ----IiVVNKaDl 206 (332)
T PRK09435 198 ----LIVINKADG 206 (332)
T ss_pred ----eEEeehhcc
Confidence 389999764
No 86
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.95 E-value=7.5e-08 Score=79.59 Aligned_cols=142 Identities=19% Similarity=0.226 Sum_probs=90.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-ccccCCCCCCCCCcCCcccccc-ccCceeecCCCCcccc
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI-PILMNLPDTPLLNKDNLMIPLV-NYGVKCLSMGNLITEK 81 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ 81 (261)
.+-+|+||||+.-.|...|.++| +||.+|-.||.++-+ ..++| ++--.+... .+|+.+-|...... .
T Consensus 57 TG~PGaGKSTli~~L~~~l~~~G--~rVaVlAVDPSSp~TGGsiLG--------DRiRM~~~~~~~~vFiRs~~srG~-l 125 (323)
T COG1703 57 TGVPGAGKSTLIEALGRELRERG--HRVAVLAVDPSSPFTGGSILG--------DRIRMQRLAVDPGVFIRSSPSRGT-L 125 (323)
T ss_pred cCCCCCchHHHHHHHHHHHHHCC--cEEEEEEECCCCCCCCccccc--------cHhhHHhhccCCCeEEeecCCCcc-c
Confidence 35689999999999999999999 999999999987643 12222 222222222 45655555322111 0
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCC
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIP 161 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~ 161 (261)
. ......++.+..+....||+|||.|- |.+......... ||.+++++.|+..+--+..+ ..+++-.++
T Consensus 126 G-------GlS~at~~~i~~ldAaG~DvIIVETV-GvGQsev~I~~~--aDt~~~v~~pg~GD~~Q~iK-~GimEiaDi- 193 (323)
T COG1703 126 G-------GLSRATREAIKLLDAAGYDVIIVETV-GVGQSEVDIANM--ADTFLVVMIPGAGDDLQGIK-AGIMEIADI- 193 (323)
T ss_pred h-------hhhHHHHHHHHHHHhcCCCEEEEEec-CCCcchhHHhhh--cceEEEEecCCCCcHHHHHH-hhhhhhhhe-
Confidence 1 12233455555555579999999998 466665666666 99999999998865543333 123332222
Q ss_pred eEEEEEcCCC
Q psy14655 162 VAGLVMNMNS 171 (261)
Q Consensus 162 ~~giv~N~~~ 171 (261)
+|+|+++
T Consensus 194 ---~vINKaD 200 (323)
T COG1703 194 ---IVINKAD 200 (323)
T ss_pred ---eeEeccC
Confidence 7899955
No 87
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.94 E-value=3.7e-09 Score=93.71 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=75.2
Q ss_pred cCCCCCcHHHHHHHHHHHHH--hcCCCCeEEEEecCCCCCCc----ccccCCCCCCCCCcCCccccccccCceeecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMK--ICYPDKEIGILDADVFGPSI----PILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNL 77 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la--~~g~~~~VllvD~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (261)
-+.+|+||||++++||..++ +.| ++|++||+|++.... ..+... .++.+....
T Consensus 227 vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~~r~~a~eqL~~~a~~-----------------~~vp~~~~~-- 285 (424)
T PRK05703 227 VGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDTYRIGAVEQLKTYAKI-----------------MGIPVEVVY-- 285 (424)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCccHHHHHHHHHHHHHH-----------------hCCceEccC--
Confidence 36699999999999999998 456 999999999986421 111110 011111100
Q ss_pred cccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh------hHHHHhhhc-CCCeEEEEeCCCcchHHHHHH
Q psy14655 78 ITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD------THLSLIQNL-FIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~------~~~~~~~~~-~ad~viiv~~~~~~s~~~~~~ 150 (261)
....+...+..+ .+||+|||||++.... .....+... ....+++|+.++ ....++..
T Consensus 286 -------------~~~~l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~~ 349 (424)
T PRK05703 286 -------------DPKELAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLKD 349 (424)
T ss_pred -------------CHHhHHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHHH
Confidence 011244444444 4799999999965432 122222210 022455555543 34455556
Q ss_pred HHHHHHhCCCCeEEEEEcCCCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+...+ ..++|+++.+.
T Consensus 350 ~~~~f~~~~--~~~vI~TKlDe 369 (424)
T PRK05703 350 IYKHFSRLP--LDGLIFTKLDE 369 (424)
T ss_pred HHHHhCCCC--CCEEEEecccc
Confidence 666666554 36899998653
No 88
>PRK14974 cell division protein FtsY; Provisional
Probab=98.90 E-value=1.3e-08 Score=87.25 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=80.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
+.+..|+||||+++.||..|...| .+|+++++|.........+... ....++.+++.....
T Consensus 145 ~~G~~GvGKTTtiakLA~~l~~~g--~~V~li~~Dt~R~~a~eqL~~~-------------a~~lgv~v~~~~~g~---- 205 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLAYYLKKNG--FSVVIAAGDTFRAGAIEQLEEH-------------AERLGVKVIKHKYGA---- 205 (336)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcCcHHHHHHHHHH-------------HHHcCCceecccCCC----
Confidence 456889999999999999999999 9999999997754321111100 001122222211111
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhHHHH----hhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTHLSL----IQNLFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~~~~----~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
.....+.+.++..+..+||+|||||++... .....- ......|.+++|++.... .++....+.+.
T Consensus 206 -------dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~ 276 (336)
T PRK14974 206 -------DPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQAREFN 276 (336)
T ss_pred -------CHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHHHHHHH
Confidence 011123344444333689999999997653 111111 111226888999886442 23333334333
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
+ ..+.-++|+|+.+.
T Consensus 277 ~-~~~~~giIlTKlD~ 291 (336)
T PRK14974 277 E-AVGIDGVILTKVDA 291 (336)
T ss_pred h-cCCCCEEEEeeecC
Confidence 2 23458899999654
No 89
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.89 E-value=6.4e-09 Score=86.86 Aligned_cols=124 Identities=11% Similarity=-0.014 Sum_probs=70.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
|++.| |+||||++.+|+..|+++| +|.+|+.|+... .. .+...+.... ....+....++........
T Consensus 6 i~G~~-gSGKTTLi~~Li~~L~~~G---~V~~IKhd~h~~-~~----~~g~Ds~~~~----~aGa~~v~~~s~~~~~~~~ 72 (274)
T PRK14493 6 IVGYK-ATGKTTLVERLVDRLSGRG---RVGTVKHMDTER-LN----PDGTDTGRHF----DAGADVVYGLTDGEWVASG 72 (274)
T ss_pred EECCC-CCCHHHHHHHHHHHHHhCC---CEEEEEEcCCCc-CC----CCCCCcHHHH----HCCCcEEEEecCCeEEEEe
Confidence 55664 9999999999999999997 499999998541 10 1110000000 0000000011100000000
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--HHHHhhhcCCC-eEEEEeCCCcchHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT--HLSLIQNLFID-TAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~--~~~~~~~~~ad-~viiv~~~~~~s~~~~~~ 150 (261)
....+.++++.+. .++|+||+|+.+..... .+..+.. +| .+++|+.|+...+.++..
T Consensus 73 ---------~~~~l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~--~~~~~l~p~~~s~~d~~~lve 132 (274)
T PRK14493 73 ---------RDRSLDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDA--DSDVVARAPTAADLDTEDLVA 132 (274)
T ss_pred ---------cCCCHHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEeccc--CCcEEEecCCCCccCHHHHHH
Confidence 0012666677676 68999999999876522 2233332 66 788888898888555544
No 90
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.88 E-value=1e-08 Score=89.60 Aligned_cols=135 Identities=11% Similarity=0.115 Sum_probs=76.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH-HhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAM-KICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l-a~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
++.+.+|+||||++++||..+ ...| ++|+++|+|.++....+.+.... ...++.+.+.
T Consensus 227 ~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~eQLk~yA-------------e~lgvp~~~~------ 285 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIEQLKRYA-------------DTMGMPFYPV------ 285 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHHHHHHHH-------------HhcCCCeeeh------
Confidence 356899999999999999876 5678 99999999998864332211100 0111111110
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhHH----HHhhhc---CCCeEEEEeCCCcchHHHHHHH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTHL----SLIQNL---FIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~~----~~~~~~---~ad~viiv~~~~~~s~~~~~~~ 151 (261)
.. +..+.+.+...+||+|||||++... .... ..+... ....+++|++++... .++...
T Consensus 286 ---------~~---~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~ 352 (432)
T PRK12724 286 ---------KD---IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTV 352 (432)
T ss_pred ---------HH---HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHH
Confidence 00 1222222322789999999975432 1111 111110 023577777755443 333444
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+.+.. ++.-++|+++.+.
T Consensus 353 ~~~f~~--~~~~glIlTKLDE 371 (432)
T PRK12724 353 LKAYES--LNYRRILLTKLDE 371 (432)
T ss_pred HHHhcC--CCCCEEEEEcccC
Confidence 555544 3557899998654
No 91
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.86 E-value=2.6e-08 Score=79.35 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=81.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+-.||||||+++-||+.+..++ ++|.+|-+|..+......+.. -...-++.+.......
T Consensus 8 GptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R~ga~eQL~~-------------~a~~l~vp~~~~~~~~------ 66 (196)
T PF00448_consen 8 GPTGVGKTTTIAKLAARLKLKG--KKVALISADTYRIGAVEQLKT-------------YAEILGVPFYVARTES------ 66 (196)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTHHHHHHHH-------------HHHHHTEEEEESSTTS------
T ss_pred CCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCCccHHHHHHH-------------HHHHhccccchhhcch------
Confidence 4469999999999999999888 999999999887432111100 0011123332211111
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL 158 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 158 (261)
+..+.+.+.++....++||+|+|||++.... ...........+.+++|++++... .++....+..+..
T Consensus 67 -----~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~-~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 67 -----DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ-EDLEQALAFYEAF 140 (196)
T ss_dssp -----CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG-HHHHHHHHHHHHS
T ss_pred -----hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh-HHHHHHHHHhhcc
Confidence 1223355556655547899999999964321 111223333367899998876654 3444555555555
Q ss_pred CCCeEEEEEcCCCC
Q psy14655 159 NIPVAGLVMNMNSV 172 (261)
Q Consensus 159 ~~~~~giv~N~~~~ 172 (261)
++ -++|+++.+.
T Consensus 141 ~~--~~lIlTKlDe 152 (196)
T PF00448_consen 141 GI--DGLILTKLDE 152 (196)
T ss_dssp ST--CEEEEESTTS
T ss_pred cC--ceEEEEeecC
Confidence 54 5889999654
No 92
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.85 E-value=6.5e-08 Score=86.87 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=81.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|++.++|+||||++++|+++|+++| ++|..+.+.+...+..++......+ ..+++...
T Consensus 7 ~I~gt~s~~GKT~it~~L~~~L~~~G--~~V~~fK~Gpd~~d~~~~~~~~g~~------------~~~ld~~~------- 65 (451)
T PRK01077 7 VIAAPASGSGKTTVTLGLMRALRRRG--LRVQPFKVGPDYIDPAYHTAATGRP------------SRNLDSWM------- 65 (451)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCC--CCcceeecCCCcccHHHHHHHhCCC------------cccCCcee-------
Confidence 37889999999999999999999999 9999999865432211110000000 01111111
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh---------hHHHHhhhcCCCeEEEEeCCCcchHH--HHH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD---------THLSLIQNLFIDTAIIITIPDTMSLQ--VAQ 149 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~---------~~~~~~~~~~ad~viiv~~~~~~s~~--~~~ 149 (261)
...+.+.+.++.+. ++||++||....|+-. ......... -.-+|+|+.+...+.. .+.
T Consensus 66 ---------~~~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l-~~pviLV~~~~~~~~~~a~l~ 134 (451)
T PRK01077 66 ---------MGEELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLL-GAPVVLVVDASGMAQSAAALV 134 (451)
T ss_pred ---------CCHHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHh-CCCEEEEECCchHHHHHHHHH
Confidence 11245677777777 8899999977744311 122233322 3356777776653332 222
Q ss_pred HHHHHHHhCCCCeEEEEEcCCC
Q psy14655 150 RGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 150 ~~~~~l~~~~~~~~giv~N~~~ 171 (261)
..+..+ ..+.++.|+|+|++.
T Consensus 135 ~~~~~~-~~~i~i~GvI~N~v~ 155 (451)
T PRK01077 135 LGFATF-DPDVRIAGVILNRVG 155 (451)
T ss_pred HHHHHh-CCCCCEEEEEEECCC
Confidence 222222 236789999999954
No 93
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.82 E-value=3.3e-08 Score=86.32 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=79.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh----cCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI----CYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLI 78 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~----~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (261)
+-++.|+||||+++.||..+.. .| ++|++|++|.+.....+.+..-.+ ..++.+...
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g--~~V~lit~Dt~R~aa~eQL~~~a~-------------~lgvpv~~~---- 239 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKS--LNIKIITIDNYRIGAKKQIQTYGD-------------IMGIPVKAI---- 239 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCC--CeEEEEeccCccHHHHHHHHHHhh-------------cCCcceEee----
Confidence 4567799999999999999884 46 999999999987543332221110 001111100
Q ss_pred ccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH------HHHhhhcCCC-eEEEEeCCCcchHHHHHHH
Q psy14655 79 TEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------LSLIQNLFID-TAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------~~~~~~~~ad-~viiv~~~~~~s~~~~~~~ 151 (261)
.....+...+..+ .+||+|||||++...... ...+.....+ .+++|++++.. ..++...
T Consensus 240 -----------~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~ 305 (388)
T PRK12723 240 -----------ESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEI 305 (388)
T ss_pred -----------CcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHH
Confidence 0112344555444 579999999997553111 1122221123 68888887664 3334444
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.+.. ++.-++|+++.+.
T Consensus 306 ~~~~~~--~~~~~~I~TKlDe 324 (388)
T PRK12723 306 FHQFSP--FSYKTVIFTKLDE 324 (388)
T ss_pred HHHhcC--CCCCEEEEEeccC
Confidence 444443 3457899998654
No 94
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.73 E-value=7.8e-07 Score=80.28 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=86.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC-CCCCcccccCCCCC---------CCCCcCCcccccc-----c
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV-FGPSIPILMNLPDT---------PLLNKDNLMIPLV-----N 66 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----~ 66 (261)
|+++-.++|||++++.|++.|.++| .+|..+-.-- +.++....-+.+.. ........+.|.. .
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l~~~G--~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRILARRG--YRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCC--CeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 6788899999999999999999999 9999876532 11111000000000 0000000111110 0
Q ss_pred cCceeecCCCCcccchh--hhh-hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--------HHHHhhhcCCCeEE
Q psy14655 67 YGVKCLSMGNLITEKSA--AIW-RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT--------HLSLIQNLFIDTAI 135 (261)
Q Consensus 67 ~~l~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~--------~~~~~~~~~ad~vi 135 (261)
....++-.|....+... ... ......+.+.+.+..+. .+||+||||+++|+... ........ .-.+|
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l-~apVI 158 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELA-NADAI 158 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHh-CCCEE
Confidence 00111211211111010 000 11233455667777777 88999999999875431 11222122 23466
Q ss_pred EEeCCCcchH-HHHHHHHHHHHhC-CCCeEEEEEcCCC
Q psy14655 136 IITIPDTMSL-QVAQRGYTMFKKL-NIPVAGLVMNMNS 171 (261)
Q Consensus 136 iv~~~~~~s~-~~~~~~~~~l~~~-~~~~~giv~N~~~ 171 (261)
+|+.....+. ..+..+++.++.. +..+.|+|+|++.
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~ 196 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFR 196 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccC
Confidence 6677665533 4445555555543 2568999999954
No 95
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.68 E-value=1.3e-07 Score=77.18 Aligned_cols=142 Identities=21% Similarity=0.237 Sum_probs=81.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccc-cccCceeecCCCCcccch
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPL-VNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 82 (261)
.+-+|+||||+.-.|+..+.+.| ++|.++-.||.++-+. -.-+.++--.... ..+++.+-|...... ..
T Consensus 35 TG~PGaGKSTli~~l~~~~~~~g--~~VaVlAVDPSSp~tG-------GAlLGDRiRM~~~~~d~~vfIRS~atRG~-lG 104 (266)
T PF03308_consen 35 TGPPGAGKSTLIDALIRELRERG--KRVAVLAVDPSSPFTG-------GALLGDRIRMQELSRDPGVFIRSMATRGS-LG 104 (266)
T ss_dssp EE-TTSSHHHHHHHHHHHHHHTT----EEEEEE-GGGGCC----------SS--GGGCHHHHTSTTEEEEEE---SS-HH
T ss_pred eCCCCCcHHHHHHHHHHHHhhcC--CceEEEEECCCCCCCC-------CcccccHHHhcCcCCCCCEEEeecCcCCC-CC
Confidence 46789999999999999999999 9999999999876431 1122333333322 345666665332221 11
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHH-HHHHHHHHHhCCCC
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQV-AQRGYTMFKKLNIP 161 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~-~~~~~~~l~~~~~~ 161 (261)
-......+.+..+....||+|||-|- |.+..-...... ||.+++|+.|...+--+ .+.-+ ++-.+
T Consensus 105 -------Gls~~t~~~v~ll~aaG~D~IiiETV-GvGQsE~~I~~~--aD~~v~v~~Pg~GD~iQ~~KaGi--mEiaD-- 170 (266)
T PF03308_consen 105 -------GLSRATRDAVRLLDAAGFDVIIIETV-GVGQSEVDIADM--ADTVVLVLVPGLGDEIQAIKAGI--MEIAD-- 170 (266)
T ss_dssp -------HHHHHHHHHHHHHHHTT-SEEEEEEE-SSSTHHHHHHTT--SSEEEEEEESSTCCCCCTB-TTH--HHH-S--
T ss_pred -------CccHhHHHHHHHHHHcCCCEEEEeCC-CCCccHHHHHHh--cCeEEEEecCCCccHHHHHhhhh--hhhcc--
Confidence 11223444444444478999999998 466665666666 99999999998854432 22212 22122
Q ss_pred eEEEEEcCCC
Q psy14655 162 VAGLVMNMNS 171 (261)
Q Consensus 162 ~~giv~N~~~ 171 (261)
-+|+|+++
T Consensus 171 --i~vVNKaD 178 (266)
T PF03308_consen 171 --IFVVNKAD 178 (266)
T ss_dssp --EEEEE--S
T ss_pred --EEEEeCCC
Confidence 27899854
No 96
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=2.1e-07 Score=77.55 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=80.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-cccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPS-IPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
+-++.|+||||+...++..+..++ .+|.+|++|.+... ...+..... ..++.+....
T Consensus 80 ~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~--------------~~~~~~~~~~------ 137 (270)
T PRK06731 80 LIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVK--------------TIGFEVIAVR------ 137 (270)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhh--------------hcCceEEecC------
Confidence 446799999999999999999888 99999999988522 111111000 0112222110
Q ss_pred hhhhhhchHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCC--hh-HH---HHhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTG--DT-HL---SLIQNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~-~~~yd~IiiD~~~~~~--~~-~~---~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
....+.+.++.+. ..+||+||||+++... .. .. ..+.....+.+++|++++... .++...++.
T Consensus 138 ---------~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~ 207 (270)
T PRK06731 138 ---------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITN 207 (270)
T ss_pred ---------CHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHH
Confidence 1122445555553 1479999999998662 22 11 122222256788888765432 233344555
Q ss_pred HHhCCCCeEEEEEcCCCC
Q psy14655 155 FKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~~ 172 (261)
+.. .++-++|+++.+.
T Consensus 208 f~~--~~~~~~I~TKlDe 223 (270)
T PRK06731 208 FKD--IHIDGIVFTKFDE 223 (270)
T ss_pred hCC--CCCCEEEEEeecC
Confidence 554 5668899999654
No 97
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.65 E-value=1.1e-06 Score=72.08 Aligned_cols=156 Identities=11% Similarity=0.049 Sum_probs=90.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--CCcccc-----ccccCceeecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--DNLMIP-----LVNYGVKCLSM 74 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~l~~~~~ 74 (261)
|++.-.|+|||+++..|+..|.++| .+|.++- |..+..... + ....+ ...+.. .....+..++.
T Consensus 7 It~t~t~vGKT~vt~~L~~~l~~~g--~~v~~~K--Pi~~g~~~~-~----~~~~~~D~~~l~~~~~~~~~~~~~~p~~~ 77 (231)
T PRK12374 7 ITGTDTSVGKTVVSRALLQALASQG--KTVAGYK--PVAKGSKET-P----EGLRNKDALVLQSVSSIELPYEAVNPIAL 77 (231)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEC--ccccCCccC-C----CCCchHHHHHHHHhcCCCCCHHhccCeec
Confidence 5677889999999999999999999 9999874 333221100 0 00000 000000 00001111111
Q ss_pred CCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh------HHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 75 GNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT------HLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~------~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
...... . ........+.+.+.++.++ ++||+|||+..+|+... ........ ---+++|+.....++..+
T Consensus 78 ~~~~a~--~-~~~~~i~~~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~-~~pvilV~~~~lg~in~~ 152 (231)
T PRK12374 78 SEEESS--V-AHSCPINYTLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQE-QLPVLMVVGIQEGCINHA 152 (231)
T ss_pred CCCcCh--H-HcCCcCCHHHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHh-CCCEEEEECCCcChHHHH
Confidence 111110 0 0111112234566666677 89999999999855321 11122221 345788887788888888
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 149 QRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 149 ~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.-.++.+...++++.|+|+|++.
T Consensus 153 lLt~~~l~~~~~~~~gvV~N~~~ 175 (231)
T PRK12374 153 LLTAQAIANDGLPLIGWVANRIN 175 (231)
T ss_pred HHHHHHHHhCCCcEEEEEEeCcc
Confidence 88888888889999999999954
No 98
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.64 E-value=3.6e-07 Score=73.09 Aligned_cols=151 Identities=18% Similarity=0.231 Sum_probs=89.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCC-------cccccCCCCCCCCCcCCccccccccCceeecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPS-------IPILMNLPDTPLLNKDNLMIPLVNYGVKCLSM 74 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 74 (261)
|++.--|+|||+++..|+..|.++| .+|.++=.=.++.. +..+++... +.. ....+..
T Consensus 5 I~~t~t~vGKT~vslgL~~~l~~~g--~~v~~~KPi~~~~~~d~d~~~~~~~~~~~~-----------~~~--~~~~~~~ 69 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARALRRRG--IKVGYFKPIQTGPEDDEDAELIRELFGLSE-----------PPD--DPSPYTF 69 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT--SEEEEEEEEEESCCCSSHHHHHHHHCCTCC-----------CHH--HHECEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCC--CceEEEeeeEecCCCCchHHHHHHHhCCCc-----------ccc--ccccccc
Confidence 5778889999999999999999999 99987643222211 011111111 000 0001111
Q ss_pred CCCcccchhhhhhchHHHHHHHHH-HHHhccCCCCEEEEeCCCCCC------hhHHHHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 75 GNLITEKSAAIWRGLMVMQALNKL-TVQVQWGPCDILFIDTPPGTG------DTHLSLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~-l~~l~~~~yd~IiiD~~~~~~------~~~~~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
.... ..............+.++ ++.++ .++|++||+...+.. .....+.... -..+|+|......++.+
T Consensus 70 ~~~~--~~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L-~a~vIlV~~~~~g~i~~ 145 (199)
T PF13500_consen 70 DEPA--SPHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKAL-GAPVILVASGRLGTINH 145 (199)
T ss_dssp SSSS---HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHH-T-EEEEEEESSTTHHHH
T ss_pred Cccc--CHHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHc-CCCEEEEeCCCCCCHHH
Confidence 1100 011111101111114444 47777 899999999987764 1122333332 23588888888899999
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 148 AQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 148 ~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
+...++.+...+.++.|+|+|++.
T Consensus 146 ~l~~~~~~~~~g~~v~GvI~N~~~ 169 (199)
T PF13500_consen 146 TLLTIEALKQRGIRVLGVILNRVP 169 (199)
T ss_dssp HHHHHHHHHCTTS-EEEEEEEECT
T ss_pred HHHHHHHHHhcCCCEEEEEEECCC
Confidence 999999999889999999999844
No 99
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.62 E-value=2.8e-08 Score=83.80 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=32.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGP 41 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~ 41 (261)
.+.+|+||||+++.||.+++.. | +++|.+|++|++..
T Consensus 200 vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~ 237 (282)
T TIGR03499 200 VGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDTYRI 237 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCccch
Confidence 3568999999999999999976 3 38999999999864
No 100
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.62 E-value=3.9e-07 Score=85.87 Aligned_cols=133 Identities=14% Similarity=0.217 Sum_probs=84.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
|++...|+|||+++..|+..|.++| .+|.++--..+.+. .. .... ..+..+
T Consensus 7 I~~T~t~~GKT~vslgL~~~L~~~G--~~Vg~fKPi~~~p~-------~~------~~~~--------~~~~~~------ 57 (684)
T PRK05632 7 LAPTGTGVGLTSVSLGLMRALERKG--VKVGFFKPIAQPPL-------TM------SEVE--------ALLASG------ 57 (684)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC--CeEEEeCCcccCCC-------CH------HHHH--------HHHhcc------
Confidence 5778899999999999999999999 99999875444310 00 0000 000000
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH------HHHhhhcCCCeEEEEeCCCcchHHHHHHHH---
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------LSLIQNLFIDTAIIITIPDTMSLQVAQRGY--- 152 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~--- 152 (261)
......+.+.+.++.+. .+||+||||++.+.+... ....... .+-+++|+.++..++.++...+
T Consensus 58 -----~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L-~~pVILV~~~~~~si~d~~~~i~~~ 130 (684)
T PRK05632 58 -----QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL-GAEVVLVSSGGNDTPEELAERIELA 130 (684)
T ss_pred -----CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHh-CCCEEEEECCCCCChHHHHHHHHHH
Confidence 00122344566666677 899999999987654321 1112211 4688999998887765544433
Q ss_pred -HHHH-hCCCCeEEEEEcCC
Q psy14655 153 -TMFK-KLNIPVAGLVMNMN 170 (261)
Q Consensus 153 -~~l~-~~~~~~~giv~N~~ 170 (261)
+.+. ..+.+..|+|+|+.
T Consensus 131 ~~~l~~~~~~~v~GVIvNr~ 150 (684)
T PRK05632 131 ASSFGGAKNANILGVIINKL 150 (684)
T ss_pred HHHhccCCCCcEEEEEEECC
Confidence 3333 34678999999993
No 101
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.53 E-value=8.2e-06 Score=65.75 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=95.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCcccc-------ccccCceee--
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIP-------LVNYGVKCL-- 72 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~-- 72 (261)
|++.--|||||.+++.|+.+|..+| ++|...=.=..+ .+....-++...+.. ....+.+.+
T Consensus 7 VtGTDT~VGKTv~S~aL~~~l~~~g--~~~~~~KPVqsG--------~~~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~ 76 (223)
T COG0132 7 VTGTDTGVGKTVVSAALAQALKQQG--YSVAGYKPVQTG--------SEETAENSDALVLQRLSGLDLSYELINPYRFKE 76 (223)
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCC--CeeEEECceeeC--------CCCCCCCchHHHHHHhcCCCcccccccceecCC
Confidence 5667779999999999999999999 888775322111 111000000000000 000111111
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh------hHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD------THLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~------~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
|..+..+.... ......+.+...+..+. ..||+|+|-..+|+-. .....+... .--+|+|+.....++.
T Consensus 77 P~sPhlAa~~e---g~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~-~lpvILV~~~~LGtIN 151 (223)
T COG0132 77 PLSPHLAAELE---GRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQL-QLPVILVVGIKLGTIN 151 (223)
T ss_pred CCCcHHHHhhc---CCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHc-CCCEEEEecCCccHHH
Confidence 22222211111 11134455666677777 7999999999988731 112222211 4468999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 147 VAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 147 ~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+.-.++.++.-+++..|+|+|...
T Consensus 152 HtlLt~eal~~~gl~l~G~I~n~~~ 176 (223)
T COG0132 152 HTLLTVEALRARGLPLAGWVANGIN 176 (223)
T ss_pred HHHHHHHHHHHCCCCEEEEEEccCC
Confidence 9999999999999999999999854
No 102
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=6.8e-07 Score=83.73 Aligned_cols=136 Identities=16% Similarity=0.105 Sum_probs=78.9
Q ss_pred CCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 5 SKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
+-.|+||||+...||..+. ..| +++|.+|++|.+.......+.... ...++.+...
T Consensus 192 GpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~RigA~eQL~~~a-------------~~~gvpv~~~--------- 248 (767)
T PRK14723 192 GPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIGALEQLRIYG-------------RILGVPVHAV--------- 248 (767)
T ss_pred CCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchHHHHHHHHHH-------------HhCCCCcccc---------
Confidence 4569999999999999886 444 369999999987633211111000 0011111100
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhHHHHhh----hcCCCeEEEEeCCCcchHHHHHHHHHHHHh
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTHLSLIQ----NLFIDTAIIITIPDTMSLQVAQRGYTMFKK 157 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~~~~~~----~~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 157 (261)
.....+.+.++.+ .+||+|||||++-.. ......+. ....+.+++|++.+. ..+.+..+++.+..
T Consensus 249 ------~~~~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~i~~~f~~ 319 (767)
T PRK14723 249 ------KDAADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNEVVHAYRH 319 (767)
T ss_pred ------CCHHHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHHHHHHHhh
Confidence 0112355666655 478999999997332 11111111 111467888888663 34555666666665
Q ss_pred C-CCCeEEEEEcCCCC
Q psy14655 158 L-NIPVAGLVMNMNSV 172 (261)
Q Consensus 158 ~-~~~~~giv~N~~~~ 172 (261)
. ..++-++|+++.+.
T Consensus 320 ~~~~~i~glIlTKLDE 335 (767)
T PRK14723 320 GAGEDVDGCIITKLDE 335 (767)
T ss_pred cccCCCCEEEEeccCC
Confidence 3 34568999999664
No 103
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.44 E-value=6.7e-06 Score=73.89 Aligned_cols=138 Identities=13% Similarity=0.129 Sum_probs=76.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
.|++...|+||||+++.|+++|+++| .+|..+-.-+.. ++ +.+- ..+......+++.
T Consensus 3 ~I~gT~t~vGKT~vt~~L~~~L~~~G--~~V~~fK~g~d~--------~D--~~~~--~~~~g~~~~~ld~--------- 59 (449)
T TIGR00379 3 VIAGTSSGVGKTTISTGIMKALSRRK--LRVQPFKVGPDY--------ID--PMFH--TQATGRPSRNLDS--------- 59 (449)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC--CceeEEccCCCC--------CC--HHHH--HHHhCCchhhCCc---------
Confidence 36789999999999999999999999 999998652110 00 0000 0000000001100
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC---------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG---------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~---------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
. ....+.+.+.+..+. +++|++||....|+- .....+.... ---||+|+.... ....+..+
T Consensus 60 ---~----~~~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l-~~pVILV~~~~~-~~~t~~al 129 (449)
T TIGR00379 60 ---F----FMSEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKAL-DAPIVLVMNCQR-LSRSAAAI 129 (449)
T ss_pred ---c----cCCHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHh-CCCEEEEECCch-HHHHHHHH
Confidence 0 012445777777777 889999999875442 1122333332 224666666442 11222222
Q ss_pred HHHH--HhCCCCeEEEEEcCCC
Q psy14655 152 YTMF--KKLNIPVAGLVMNMNS 171 (261)
Q Consensus 152 ~~~l--~~~~~~~~giv~N~~~ 171 (261)
+..+ ...+.++.|+|+|++.
T Consensus 130 ~~~~~~~~~~i~i~GvIlN~v~ 151 (449)
T TIGR00379 130 VLGYRSFDPGVKLKGVILNRVG 151 (449)
T ss_pred HHHHHhhCCCCCEEEEEEECCC
Confidence 2222 2347789999999954
No 104
>PRK00784 cobyric acid synthase; Provisional
Probab=98.43 E-value=5.5e-06 Score=75.24 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=84.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccc-------c--ccccCceee
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMI-------P--LVNYGVKCL 72 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~l~~~ 72 (261)
|++...|||||++++.|++.|.++| ++|..+- |++.+.....+.+.. ...+...+. + ..++ ..+-
T Consensus 7 ItGT~T~vGKT~vt~~L~~~l~~~G--~~v~~~K--pv~~~~~~~~~~dg~-~~~Da~~l~~~~~~~~~~~~i~P-~~~~ 80 (488)
T PRK00784 7 VQGTASDAGKSTLVAGLCRILARRG--YRVAPFK--AQNMSLNSAVTADGG-EIGRAQALQAEAAGVEPSVDMNP-VLLK 80 (488)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC--CeEeccc--chhccccceECCCCC-eeHHHHHHHHHhCCCCchhccCC-EEec
Confidence 6788999999999999999999999 9998774 332111100000000 000000000 0 0000 0111
Q ss_pred cCCCCccc----c--------hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--------hhHHHHhhhcCCC
Q psy14655 73 SMGNLITE----K--------SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--------DTHLSLIQNLFID 132 (261)
Q Consensus 73 ~~~~~~~~----~--------~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--------~~~~~~~~~~~ad 132 (261)
|..+.... . ...........+.+.+.+..+. ++||++||+..+++- .....+.... --
T Consensus 81 ~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l-~~ 158 (488)
T PRK00784 81 PQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAA-DA 158 (488)
T ss_pred CCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHHc-CC
Confidence 21111100 0 0000112234455677777777 899999999774432 1122222221 12
Q ss_pred eEEEEeCCCcc-hHHHHHHHHHHHHh-CCCCeEEEEEcCCC
Q psy14655 133 TAIIITIPDTM-SLQVAQRGYTMFKK-LNIPVAGLVMNMNS 171 (261)
Q Consensus 133 ~viiv~~~~~~-s~~~~~~~~~~l~~-~~~~~~giv~N~~~ 171 (261)
-||+|+..... ++..+..+++.+.. .+.++.|+|+|++.
T Consensus 159 PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~ 199 (488)
T PRK00784 159 PVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFR 199 (488)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCC
Confidence 46667666554 46666655566653 35689999999965
No 105
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.43 E-value=3.9e-06 Score=72.38 Aligned_cols=123 Identities=22% Similarity=0.283 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCccc--c--cCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPI--L--MNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 8 GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
++||||+++-||..+-.+| ++|.+||+|+-++...- + +.....+. ..+.........++ |...+....
T Consensus 83 DSGKSTLt~~LaN~~l~rG--~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~----~~L~~l~~~~~~Fv--G~isP~~~~ 154 (398)
T COG1341 83 DSGKSTLTTYLANKLLARG--RKVAIIDADVGQSEIGPPGFISLAFPESPV----ISLSELEPFTLYFV--GSISPQGFP 154 (398)
T ss_pred CcCHHHHHHHHHHHHhhcC--ceEEEEeCCCCCcccCCCceEEeecccCCC----CCHHHcCccceEEE--eccCCCCCh
Confidence 7999999999999999999 99999999998875310 0 00000000 00112222233332 211111110
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-----hHHHHhhhcCCCeEEEEeCCCcch
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-----THLSLIQNLFIDTAIIITIPDTMS 144 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-----~~~~~~~~~~ad~viiv~~~~~~s 144 (261)
........++++.++ +.-|+|||||++.... ...+.+.....|+|+..=..+..+
T Consensus 155 -----~~~i~~v~rL~~~a~-~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~~~ 214 (398)
T COG1341 155 -----GRYIAGVARLVDLAK-KEADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANELS 214 (398)
T ss_pred -----HHHHHHHHHHHHHhh-ccCCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEeccccccc
Confidence 122334566777776 5679999999976533 223333333356666554444433
No 106
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.40 E-value=1.7e-07 Score=76.88 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
--|+||||.+..+..++..+| ++|.+|.+||....+
T Consensus 4 paGSGKTT~~~~~~~~~~~~~--~~~~~vNLDPa~~~~ 39 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESNG--RDVYIVNLDPAVENL 39 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT---S-EEEEE--TT-S--
T ss_pred CCCCCHHHHHHHHHHHHHhcc--CCceEEEcchHhccc
Confidence 349999999999999999999 999999999997654
No 107
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.28 E-value=3.9e-06 Score=70.75 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhhhh
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIW 86 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (261)
-|+||||+..-||.+|.++| ++|++.-+|..+...-.-+..-. ...++.++....
T Consensus 148 NG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRAaAiEQL~~w~-------------er~gv~vI~~~~---------- 202 (340)
T COG0552 148 NGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRAAAIEQLEVWG-------------ERLGVPVISGKE---------- 202 (340)
T ss_pred CCCchHhHHHHHHHHHHHCC--CeEEEEecchHHHHHHHHHHHHH-------------HHhCCeEEccCC----------
Confidence 49999999999999999999 99999999987643222111100 123455554321
Q ss_pred hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHh-------hhcC------CCeEEEEeC--CCcchHHHHHHH
Q psy14655 87 RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLI-------QNLF------IDTAIIITI--PDTMSLQVAQRG 151 (261)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~-------~~~~------ad~viiv~~--~~~~s~~~~~~~ 151 (261)
+.+......+.+++.+.++||+|||||.+.+.+-. +++ .... .+.++++++ .+..++.++..+
T Consensus 203 -G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 203 -GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred -CCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 11122234556666655899999999998764211 111 0000 234777766 344555555443
Q ss_pred HHHHHhCCCCeEEEEEcCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~ 171 (261)
-+. .++-|+|+++.+
T Consensus 281 ~ea-----v~l~GiIlTKlD 295 (340)
T COG0552 281 NEA-----VGLDGIILTKLD 295 (340)
T ss_pred HHh-----cCCceEEEEecc
Confidence 332 236788888855
No 108
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=9.2e-06 Score=70.66 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=30.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGP 41 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~ 41 (261)
+-+.-|+||||+++.||..+.. .| ..+|.+|.+|....
T Consensus 142 lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ 180 (374)
T PRK14722 142 LMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRI 180 (374)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccc
Confidence 3466799999999999998764 34 26999999999854
No 109
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.22 E-value=6.5e-06 Score=69.00 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=50.0
Q ss_pred cCCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 104 WGPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 104 ~~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+.++++.|+|||+..+ .....++.. +|.+++|+.++.........+++.+...+.+.+ +++|+.+.
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~~~~l~~--aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~ 128 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGETRAALRA--ADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDR 128 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHHHHHHHH--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCcc
Confidence 3678999999997653 334555665 999999999888777677777777777787755 79999664
No 110
>KOG0781|consensus
Probab=98.16 E-value=6.8e-06 Score=71.98 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=91.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+=-||||||--+-+|.+|-+++ .|||+.-||+.++..-.-++..-+. +......-+.++..|+.-
T Consensus 385 GVNGVGKSTNLAKIayWLlqNk--frVLIAACDTFRsGAvEQLrtHv~r-------l~~l~~~~v~lfekGYgk------ 449 (587)
T KOG0781|consen 385 GVNGVGKSTNLAKIAYWLLQNK--FRVLIAACDTFRSGAVEQLRTHVER-------LSALHGTMVELFEKGYGK------ 449 (587)
T ss_pred eecCccccchHHHHHHHHHhCC--ceEEEEeccchhhhHHHHHHHHHHH-------HHHhccchhHHHhhhcCC------
Confidence 3459999999999999999999 9999999999876532222221100 000011112222222211
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--hHHHHh----hhcCCCeEEEEeCC--CcchHHHHHHHHHHHH
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--THLSLI----QNLFIDTAIIITIP--DTMSLQVAQRGYTMFK 156 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--~~~~~~----~~~~ad~viiv~~~--~~~s~~~~~~~~~~l~ 156 (261)
+.....+..++..+.++||+|+|||.+...+ ..+..+ ..-.-|.|+.|-+. +..++..+..+-+.+.
T Consensus 450 -----d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~ 524 (587)
T KOG0781|consen 450 -----DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALA 524 (587)
T ss_pred -----ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHh
Confidence 1122345666666668999999999976532 111111 11126899999884 5578888888888887
Q ss_pred hCCCC--eEEEEEcCCC
Q psy14655 157 KLNIP--VAGLVMNMNS 171 (261)
Q Consensus 157 ~~~~~--~~giv~N~~~ 171 (261)
+..-+ +-|+++.+++
T Consensus 525 ~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 525 DHSTPRLIDGILLTKFD 541 (587)
T ss_pred cCCCccccceEEEEecc
Confidence 65422 6788999844
No 111
>KOG0780|consensus
Probab=98.15 E-value=6.5e-06 Score=70.36 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=66.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhhhh
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIW 86 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 86 (261)
-|+||||++.-||.++.++| +||++|=.|........-+.... ...++.+...+...
T Consensus 110 qG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTFRagAfDQLkqnA-------------~k~~iP~ygsyte~-------- 166 (483)
T KOG0780|consen 110 QGSGKTTTCTKLAYYYKKKG--YKVALVCADTFRAGAFDQLKQNA-------------TKARVPFYGSYTEA-------- 166 (483)
T ss_pred cCCCcceeHHHHHHHHHhcC--CceeEEeecccccchHHHHHHHh-------------HhhCCeeEeccccc--------
Confidence 48999999999999999999 99999999987754322221100 11122222211111
Q ss_pred hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC------hhHHHHhhhcCCCeEEEEeCCCc
Q psy14655 87 RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG------DTHLSLIQNLFIDTAIIITIPDT 142 (261)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~------~~~~~~~~~~~ad~viiv~~~~~ 142 (261)
+......+-++..+.++||+||+||++... ........+..-|.||+|++.+.
T Consensus 167 ---dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 167 ---DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred ---chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 111122334444445899999999996432 12222333333799999998654
No 112
>KOG1532|consensus
Probab=98.15 E-value=2.6e-05 Score=63.95 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=86.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+=-|+||||....|-..+...+ .+.-+|.+||.......-.+++-...+.-.+.... -..-|-|......+..
T Consensus 26 GMAGSGKTTF~QrL~~hl~~~~--~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkq-----Y~LGPNGgI~TsLNLF 98 (366)
T KOG1532|consen 26 GMAGSGKTTFMQRLNSHLHAKK--TPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQ-----YQLGPNGGIVTSLNLF 98 (366)
T ss_pred ecCCCCchhHHHHHHHHHhhcc--CCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHH-----hCCCCCcchhhhHHHH
Confidence 3459999999999999999998 89999999998876655555443332221111111 1112222222222211
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--------hHHHHhhhcCCCeEEEEeC-CCcch----HHHHHHH
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--------THLSLIQNLFIDTAIIITI-PDTMS----LQVAQRG 151 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--------~~~~~~~~~~ad~viiv~~-~~~~s----~~~~~~~ 151 (261)
. .....+-.+++... +.+||||||||+.+.- .....+...--..|+.++. |...+ +....-.
T Consensus 99 ~----tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYA 173 (366)
T KOG1532|consen 99 A----TKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYA 173 (366)
T ss_pred H----HHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHH
Confidence 1 11223446666666 8899999999976642 2222222211223444554 33322 1222223
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
...+.+..++.+ ++.|+.+.
T Consensus 174 cSilyktklp~i-vvfNK~Dv 193 (366)
T KOG1532|consen 174 CSILYKTKLPFI-VVFNKTDV 193 (366)
T ss_pred HHHHHhccCCeE-EEEecccc
Confidence 345566777855 88999765
No 113
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.15 E-value=8.4e-06 Score=73.13 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~ 40 (261)
--|+||||++..||..+.. .| +++|.+|++|.+.
T Consensus 264 pnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~R 298 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYR 298 (484)
T ss_pred CCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccc
Confidence 4599999999999999864 44 2599999999975
No 114
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.12 E-value=6e-05 Score=65.77 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=75.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec--CCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA--DVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLI 78 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 78 (261)
+|.+...|+||||+|..|.++|.++| .+|=-.-+ |+--|+.+... ...+. .|++..-
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg--~~VqpfKvGPDYIDP~~H~~a--tG~~s------------rNLD~~m----- 62 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRG--LKVQPFKVGPDYIDPGYHTAA--TGRPS------------RNLDSWM----- 62 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcC--CcccccccCCCccCchhhhHh--hCCcc------------CCCchhh-----
Confidence 36788899999999999999999998 66633222 11111111110 00111 1111111
Q ss_pred ccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC---------hhHHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 79 TEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG---------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~---------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
...+.++..+..-. ++.|+.||..-=|+- ..+..+.... =-=||+|++....+-..+
T Consensus 63 -----------m~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l-~~PVvLVid~~~~s~S~A- 128 (451)
T COG1797 63 -----------MGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL-GAPVVLVVDASGLSRSVA- 128 (451)
T ss_pred -----------cCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHh-CCCEEEEEeCcchhHHHH-
Confidence 12245777777776 788988874432210 1111111111 123788888766554333
Q ss_pred HHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 150 RGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 150 ~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
.++.-+..+ ++++.|+|+||+.+
T Consensus 129 Aiv~G~~~fdp~v~iaGVIlNrVgs 153 (451)
T COG1797 129 AIVKGFKHFDPDVNIAGVILNRVGS 153 (451)
T ss_pred HHHHHHHhcCCCCceEEEEEecCCC
Confidence 345555554 56789999999653
No 115
>KOG1533|consensus
Probab=98.05 E-value=6e-06 Score=66.03 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=35.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCccc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPI 45 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~ 45 (261)
+-+--|+||||-+..+...|+..| ++|.+|.+||.+-.+..
T Consensus 7 VIGPPgSGKsTYc~g~~~fls~~g--r~~~vVNLDPaNd~~~Y 47 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGMSQFLSAIG--RPVAVVNLDPANDNLPY 47 (290)
T ss_pred EEcCCCCCccchhhhHHHHHHHhC--CceEEEecCCcccCCCC
Confidence 345679999999999999999999 99999999999765543
No 116
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.86 E-value=0.00017 Score=59.24 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=47.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.++|||+... ......+.. +|.+++|+.....-......+.+.+.+.+.+.+ +++|+.+.
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~~~l~~--aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~ 128 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSV--LDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDR 128 (237)
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHH--hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 578899999996543 233445555 899999998766545566777777877888865 89999663
No 117
>PRK12740 elongation factor G; Reviewed
Probab=97.85 E-value=0.00011 Score=69.66 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+|+++++|||+... ......+.. +|.+++|++++..........+..+...+.+.+ +|+|+.+.
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~--aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRV--LDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHH--hCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 679999999997643 334455555 999999999877666666667777777787755 69999764
No 118
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.84 E-value=0.00027 Score=59.25 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=48.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.++|||+... ......+.. +|.+++|+.....-......+++.+...+.+.+ +++|+.+.
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~ 128 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRV--LDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDR 128 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHH--cCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 578999999997542 223445555 899999998766555666778888888888866 79999663
No 119
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.78 E-value=0.00091 Score=59.59 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=75.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
|++...|+||||++..|+.+|.++| .+|-.+-+-|..-+...+-.....+ ..+++.. +..
T Consensus 6 i~~~~s~~GKT~vt~gl~~~l~~~g--~~v~~~K~Gpd~iD~~~~~~~~g~~------------~~nld~~-----~~~- 65 (433)
T PRK13896 6 LGGTSSGVGKTVATLATIRALEDAG--YAVQPAKAGPDFIDPSHHEAVAGRP------------SRTLDPW-----LSG- 65 (433)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC--CeeEEEeeCCCCCCHHHHHHHhCCC------------cccCChh-----hCC-
Confidence 6788899999999999999999999 8887665533211111110000000 0111100 000
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh----hHHHHhhhcCCCeEEEEeCCCcchHHHH--HHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD----THLSLIQNLFIDTAIIITIPDTMSLQVA--QRGYTMF 155 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~----~~~~~~~~~~ad~viiv~~~~~~s~~~~--~~~~~~l 155 (261)
.+.++..+. + ..+|++||....|+-+ ......... ---+|+|+.+...+..-+ ...+..+
T Consensus 66 ----------~~~i~~~~~--~-~~~d~~vIEG~gGl~dg~~~s~adla~~l-~~PviLVv~~~~g~~s~aa~l~g~~~~ 131 (433)
T PRK13896 66 ----------EDGMRRNYY--R-GEGDICVVEGVMGLYDGDVSSTAMVAEAL-DLPVVLVVDAKAGMESVAATALGFRAY 131 (433)
T ss_pred ----------HHHHHHHHH--h-hcCCEEEEECCCccccCCCCCHHHHHHHH-CCCEEEEEcCcccHHHHHHHHHHHHHH
Confidence 122444332 2 4589999998776521 122222221 124788888777754433 3333233
Q ss_pred Hh---CCCCeEEEEEcCCC
Q psy14655 156 KK---LNIPVAGLVMNMNS 171 (261)
Q Consensus 156 ~~---~~~~~~giv~N~~~ 171 (261)
.. .++++.|+|+|++.
T Consensus 132 ~~~~~~~~~i~GvIlN~~~ 150 (433)
T PRK13896 132 ADRIGRDIDVAGVIAQRAH 150 (433)
T ss_pred HHhccCCCcEEEEEEECCC
Confidence 33 37889999999954
No 120
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.75 E-value=0.0003 Score=58.91 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.++.+.++|||+... ......+.. +|.+++|+.....-......+.+.+...+.+ +-+++|+.+
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D 134 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLTA--VDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLD 134 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHH--CCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCc
Confidence 678999999997542 224445555 9999999987654444555666777767777 447899965
No 121
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.71 E-value=0.00041 Score=55.25 Aligned_cols=66 Identities=11% Similarity=0.222 Sum_probs=47.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.++++|||+... ......+.. +|.+++|++....-.......+..+...+.+.+-+++|+.+.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQ--MDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 567899999996432 223344444 999999999876555667778888888888766688999663
No 122
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.68 E-value=0.00048 Score=52.16 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=41.5
Q ss_pred CCCCEEEEeCCCCCChhH----------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTH----------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~----------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+..+... ...... +|.+++++.+..........+.+.+...+.+ +-+|+|+.+.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEE--ADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh--CCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 457899999997544211 223344 8999999986543222233456666666665 5589999664
No 123
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.60 E-value=0.00027 Score=53.89 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=34.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPS 42 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~ 42 (261)
++.++.|+||||++..++..++..| .+|++++++.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~e~~~~~ 41 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKG--GKVVYVDIEEEIEE 41 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcC--CEEEEEECCcchHH
Confidence 4678899999999999999999988 99999999977543
No 124
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.59 E-value=0.00032 Score=61.02 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=74.4
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhhh
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAI 85 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (261)
--||||||+.+-||+.+...+..++|.+|=+|...-....-+....+ .-++.+.-
T Consensus 211 PTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~-------------im~vp~~v------------ 265 (407)
T COG1419 211 PTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD-------------IMGVPLEV------------ 265 (407)
T ss_pred CCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHH-------------HhCCceEE------------
Confidence 34999999999999999932225999999999765332111111000 00111100
Q ss_pred hhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hh----HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 86 WRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DT----HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~----~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
......|...+..+ .++|+|++||.+... .. ....+.......+.+|++.+. ...++...++.+..+
T Consensus 266 ---v~~~~el~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlkei~~~f~~~- 338 (407)
T COG1419 266 ---VYSPKELAEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKEIIKQFSLF- 338 (407)
T ss_pred ---ecCHHHHHHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHHHHHHhccC-
Confidence 01122355555555 588999999985332 11 112222211345666666443 344555666666655
Q ss_pred CCeEEEEEcCCC
Q psy14655 160 IPVAGLVMNMNS 171 (261)
Q Consensus 160 ~~~~giv~N~~~ 171 (261)
++-|+|+++.+
T Consensus 339 -~i~~~I~TKlD 349 (407)
T COG1419 339 -PIDGLIFTKLD 349 (407)
T ss_pred -CcceeEEEccc
Confidence 55788999854
No 125
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.56 E-value=0.0013 Score=59.40 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCCChh---------HHHHhhhcCCCeEEEEeCCCcchHHHHHHH----HHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTGDT---------HLSLIQNLFIDTAIIITIPDTMSLQVAQRG----YTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~---------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~----~~~l~~~~~~~~giv~N~~~ 171 (261)
.++|++||....|+-.. ...+.... ---||+|+.....++..+... .+.++..+.++.|+|+|++.
T Consensus 316 ~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l-~~PVILV~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~ 394 (476)
T PRK06278 316 SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL-GFPVYIVSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVY 394 (476)
T ss_pred cCCCEEEEECCCCcccccCCCCccccHHHHHHHh-CCCEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCC
Confidence 46899999998665322 11222221 235888888888876555443 44555668889999999954
No 126
>KOG2749|consensus
Probab=97.56 E-value=0.00035 Score=59.41 Aligned_cols=34 Identities=29% Similarity=0.086 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 8 GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
-+||||++.-|..+..++| ++.++||+|+++++.
T Consensus 113 d~GKsTl~r~L~nyavk~g--r~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 113 DVGKSTLCRILLNYAVKQG--RRPLFVELDVGQGSI 146 (415)
T ss_pred ccchHHHHHHHHHHHHHcC--CcceEEEcCCCCCce
Confidence 6899999999999999999 999999999999865
No 127
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.55 E-value=0.00013 Score=59.50 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=31.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
.+.+..|+|||+++.++|..+++.| .+|++||++
T Consensus 27 ~i~G~~GsGKT~l~~~la~~~~~~~--~~v~yi~~e 60 (225)
T PRK09361 27 QIYGPPGSGKTNICLQLAVEAAKNG--KKVIYIDTE 60 (225)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 3567899999999999999999999 999999999
No 128
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.53 E-value=0.00017 Score=56.70 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=34.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++.+..|+|||+++.+++...+++| .+|+++.++....
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~~~~ 40 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEESPE 40 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCHH
Confidence 5678899999999999999999999 9999999987643
No 129
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.51 E-value=0.00083 Score=61.58 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=46.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.++.+.++|||+..+ ......+.. +|.+++|+.+...-...+..+++.....+.++ -+++|+.+
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~--aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D 142 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTA--VDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLD 142 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHH--CCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCc
Confidence 578899999997532 334455665 99999999876654455667777777778884 48999865
No 130
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.50 E-value=0.00087 Score=54.12 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=42.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+... ......+.. +|.+++|+.............++.+...+.+ +-+|+|+.+.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~--aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRL--SDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHh--CCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 457899999997643 233444555 9999999986554333444555555555655 5589999774
No 131
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=97.48 E-value=0.00017 Score=64.90 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=40.3
Q ss_pred cccCCC---CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCC
Q psy14655 2 IASSKG---GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP 53 (261)
Q Consensus 2 v~s~KG---GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~ 53 (261)
|+|..- |.||||++.|||..|++.| +||+++ ...+++...|+++...
T Consensus 60 VTS~~PTp~GEGKTt~sinLA~~la~~G--kkvlli---LR~Psl~~~fg~kgga 109 (557)
T PRK13505 60 VTAINPTPAGEGKSTVTVGLGDALNKIG--KKTVIA---LREPSLGPVFGIKGGA 109 (557)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHHcC--CeEEEE---EecCCcccccCCCCCc
Confidence 455556 9999999999999999999 999999 7778888888877543
No 132
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.46 E-value=0.00066 Score=53.12 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..++++|+|+|+... ......+.. +|.+++++.............+..+...+.+ +-+++|+.+.
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~ 126 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSV--SDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDR 126 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHh--cCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCC
Confidence 367899999986432 223334444 9999999987665444555566666655555 6699999764
No 133
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.46 E-value=0.0011 Score=50.82 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
.-|.||||.|..+|...+.+| ++|++|=+
T Consensus 10 g~G~Gkt~~a~g~~~ra~~~g--~~v~~vQF 38 (159)
T cd00561 10 GNGKGKTTAALGLALRALGHG--YRVGVVQF 38 (159)
T ss_pred CCCCCHHHHHHHHHHHHHHCC--CeEEEEEE
Confidence 349999999999999999999 99999643
No 134
>PRK08233 hypothetical protein; Provisional
Probab=97.42 E-value=0.00069 Score=53.03 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=26.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+++-.|+||||+|..|+..|. + .+++..|.+.+.
T Consensus 8 I~G~~GsGKtTla~~L~~~l~--~--~~~~~~d~~~~~ 41 (182)
T PRK08233 8 IAAVSGGGKTTLTERLTHKLK--N--SKALYFDRYDFD 41 (182)
T ss_pred EECCCCCCHHHHHHHHHhhCC--C--CceEEECCEEcc
Confidence 345559999999999998873 4 678888888653
No 135
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.37 E-value=0.0014 Score=60.14 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=46.1
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
+++.+.|+|||+... ......+.. +|.+++|++....-...+..+.+.++..+.+ +-+++|+.+
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~~--aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD 143 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLTA--VDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLD 143 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHHh--CCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcc
Confidence 578999999997532 334455555 9999999987765445566677777767777 558899965
No 136
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.34 E-value=0.0021 Score=48.86 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=40.4
Q ss_pred CCCCEEEEeCCCCCChh----------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT----------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~----------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..++++++|+|+..... ....... +|.++++++...........+.+.+...+.+ +.+|+|+.+.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~--~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD--VDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh--CCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 35789999998643211 1122333 8999999987665333444555666655555 5589999653
No 137
>PRK00089 era GTPase Era; Reviewed
Probab=97.33 E-value=0.0023 Score=54.26 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=39.7
Q ss_pred CCCCEEEEeCCCCCCh----------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD----------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~----------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++++++++|||+.... .....+.. +|.++++++.+..--.....+++.+...+.+ +-+|+|+++.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~--~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl 125 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD--VDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDL 125 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc--CCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcC
Confidence 4578999999864321 11123333 8999999986652223344555666655556 4488999764
No 138
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.30 E-value=0.0023 Score=48.61 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=32.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||+|..|+..+...| .++.++|.|...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g--~~~~~i~~d~~r 39 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRG--RPVYVLDGDNVR 39 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEEcCHHHH
Confidence 4678899999999999999999888 899999988765
No 139
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.28 E-value=0.00036 Score=62.19 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=39.8
Q ss_pred cccCCC---CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCC
Q psy14655 2 IASSKG---GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP 53 (261)
Q Consensus 2 v~s~KG---GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~ 53 (261)
|+|.-- |.||||+++|||..|++.| +||+++ ...+++...|+.....
T Consensus 43 VTs~~PTp~GEGKTT~si~La~~la~~G--kk~l~~---LR~PSlg~~fg~kgga 92 (524)
T cd00477 43 VTAITPTPAGEGKTTTTIGLAQALNAHG--KKAIAC---LREPSLGPTFGIKGGA 92 (524)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhC--CcEEEE---EecCCcCcccCCCCCC
Confidence 445455 9999999999999999999 999988 7778888889887654
No 140
>KOG1534|consensus
Probab=97.26 E-value=0.00035 Score=55.23 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=34.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
+-+--|+||||.+.++-......| +++-+|.+||.+-.+
T Consensus 8 V~GpAgSGKSTyC~~~~~h~e~~g--Rs~~vVNLDPAae~f 46 (273)
T KOG1534|consen 8 VMGPAGSGKSTYCSSMYEHCETVG--RSVHVVNLDPAAEHF 46 (273)
T ss_pred EEccCCCCcchHHHHHHHHHHhhC--ceeEEeecCHHHHhh
Confidence 445679999999999999999999 999999999986443
No 141
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.23 E-value=0.002 Score=49.97 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+.-|.||||.|..+|..++.+| ++|+++=+-
T Consensus 12 ~g~GkGKtt~a~g~a~ra~~~g--~~v~ivQFl 42 (173)
T TIGR00708 12 TGNGKGKTTAAFGMALRALGHG--KKVGVIQFI 42 (173)
T ss_pred CCCCCChHHHHHHHHHHHHHCC--CeEEEEEEe
Confidence 3469999999999999999999 999998544
No 142
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.23 E-value=0.0005 Score=51.70 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=29.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEE-EEecCCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIG-ILDADVFGPS 42 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vl-lvD~D~~~~~ 42 (261)
|++.| |+||||++..|...|.++| ++|. +.|.|+.+..
T Consensus 5 VvG~~-~sGKTTl~~~Li~~l~~~g--~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 5 VVGPK-NSGKTTLIRKLINELKRRG--YRVAVIKHTDHGQFE 43 (140)
T ss_dssp EEEST-TSSHHHHHHHHHHHHHHTT----EEEEEE-STTSTT
T ss_pred EECCC-CCCHHHHHHHHHHHHhHcC--CceEEEEEccCCCcc
Confidence 45555 9999999999999999999 9999 8999984433
No 143
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.21 E-value=0.0033 Score=49.04 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=32.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+-.|+||||++.+|+..+...| .++.++|.|...
T Consensus 8 ~~~G~~GsGKST~a~~la~~l~~~g--~~v~~id~D~~~ 44 (175)
T PRK00889 8 WFTGLSGAGKTTIARALAEKLREAG--YPVEVLDGDAVR 44 (175)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEcCccHH
Confidence 3456789999999999999999888 899999999654
No 144
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0023 Score=53.29 Aligned_cols=68 Identities=10% Similarity=0.165 Sum_probs=54.4
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+-.|-.+|||+..+...-++..++.+|..|+|+.....-+-++..-+-..+..+.+.+-+++|+++.
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dm 140 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDM 140 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccc
Confidence 45578889999877655444444444899999999888888888888888888999999999999775
No 145
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.20 E-value=0.00039 Score=57.25 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=30.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+..+++|+|||+++.++|..|.+.| ++|+++++
T Consensus 103 ~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~ 135 (244)
T PRK07952 103 IFSGKPGTGKNHLAAAICNELLLRG--KSVLIITV 135 (244)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEH
Confidence 5789999999999999999999999 99999964
No 146
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.19 E-value=0.00048 Score=55.80 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=33.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+.+..|+||||++.++|..++.+| .+|+++|.+...
T Consensus 23 ~i~G~~GsGKT~l~~~~a~~~~~~g--~~v~yi~~e~~~ 59 (218)
T cd01394 23 QVYGPPGTGKTNIAIQLAVETAGQG--KKVAYIDTEGLS 59 (218)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 3567899999999999999999999 999999988654
No 147
>PLN03127 Elongation factor Tu; Provisional
Probab=97.17 E-value=0.004 Score=56.02 Aligned_cols=68 Identities=10% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.++++|||+..............+|.+++|++.+..-..+....+..+...+.+.+-+++|+.+.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 45689999999754322212212222899999999876556667788888888888866688999764
No 148
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.14 E-value=0.00058 Score=61.54 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=40.0
Q ss_pred cccCCC---CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCC
Q psy14655 2 IASSKG---GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP 53 (261)
Q Consensus 2 v~s~KG---GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~ 53 (261)
|+|.-- |.||||++++||..|++.| ++| ||+ ...+++...|+.....
T Consensus 59 VTs~~PTp~GEGKTT~si~La~~la~~G--k~~--i~~-LR~Pslg~~fg~kgga 108 (578)
T PRK13506 59 VTAITPTPLGEGKTVTTIGLTQGLNALG--QKV--CAC-IRQPSMGPVFGVKGGA 108 (578)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHhC--Cce--EEE-eccCCcCCccCCCCCC
Confidence 344444 9999999999999999999 999 888 8889998889887654
No 149
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.14 E-value=0.0087 Score=48.77 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.++|||+..... ....+....+|.+++|+..+..-.......++.+...+.+. .+++|+++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 57889999999643221 22222211279999999877666677778888888889884 589999663
No 150
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.0046 Score=54.87 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=68.3
Q ss_pred CCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 5 SKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
+.-|+||||+..-||..+.. .+ ..++.++=.|...-.....+ ..+ ....++.+....
T Consensus 198 GpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rigalEQL-----~~~--------a~ilGvp~~~v~-------- 255 (420)
T PRK14721 198 GPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIGGHEQL-----RIY--------GKLLGVSVRSIK-------- 255 (420)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchhHHHHH-----HHH--------HHHcCCceecCC--------
Confidence 55699999999999986543 32 26788887777542211100 000 000011111100
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH------HHHhhh-cCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------LSLIQN-LFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------~~~~~~-~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
....+...+..+ .++|+|+|||+ |..+.. ...+.. .....+++|++++. ...++...+..+.
T Consensus 256 -------~~~dl~~al~~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~-~~~~~~~~~~~f~ 324 (420)
T PRK14721 256 -------DIADLQLMLHEL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS-SGDTLDEVISAYQ 324 (420)
T ss_pred -------CHHHHHHHHHHh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCCC-CHHHHHHHHHHhc
Confidence 011123333333 68999999997 454311 111111 11346777776552 3334445555555
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
. .++-++|+++.+.
T Consensus 325 ~--~~~~~~I~TKlDE 338 (420)
T PRK14721 325 G--HGIHGCIITKVDE 338 (420)
T ss_pred C--CCCCEEEEEeeeC
Confidence 4 4567889998664
No 151
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.09 E-value=0.0023 Score=61.07 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
.+|++.|+|||+... .....++.. +|.+++|++....-......+++.+.+.+.+.+ +++|+.+..
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~al~~--aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 151 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTRAMRA--VDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRL 151 (720)
T ss_pred CceEEEEEeCCCccccHHHHHHHHHh--cCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcc
Confidence 679999999997643 345556666 999999998765444555666776667777766 999997753
No 152
>PRK07667 uridine kinase; Provisional
Probab=97.04 E-value=0.00082 Score=53.45 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=32.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+++-.|+||||+|..|+..|.+.| .+|.++++|-.
T Consensus 22 I~G~~gsGKStla~~L~~~l~~~~--~~~~~i~~Dd~ 56 (193)
T PRK07667 22 IDGLSRSGKTTFVANLKENMKQEG--IPFHIFHIDDY 56 (193)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CcEEEEEcCcc
Confidence 567889999999999999999999 99999999963
No 153
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.03 E-value=0.02 Score=43.89 Aligned_cols=142 Identities=12% Similarity=0.115 Sum_probs=70.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
++.+-=|+||||+...+.... .+ .++.++-.|......+... +. . ....+.-+..|-.....
T Consensus 4 ~l~G~~GsGKTtl~~~l~~~~--~~--~~~~~i~~~~G~~~~d~~~-------~~------~-~~~~v~~l~~GCiCC~~ 65 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ--HG--RKIAVIENEFGEVGIDNQL-------VV------D-TDEEIIEMNNGCICCTV 65 (158)
T ss_pred EEEECCCCCHHHHHHHHHhcc--cC--CcEEEEecCCCccchhHHH-------Hh------C-CCceEEEeCCCEeEeeC
Confidence 355667999999999888653 46 8888877775432221100 00 0 00011111111111111
Q ss_pred hhhhhhchHHHHHHHHHHHHh--ccCCCCEEEEeCCCCCChhHH-HHh-------hhcCCCeEEEEeCCCcchH--HHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQV--QWGPCDILFIDTPPGTGDTHL-SLI-------QNLFIDTAIIITIPDTMSL--QVAQ 149 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l--~~~~yd~IiiD~~~~~~~~~~-~~~-------~~~~ad~viiv~~~~~~s~--~~~~ 149 (261)
. ......+.++++.+ ....+|+|++|+|+...+... ..+ .....|.++.++++..... ....
T Consensus 66 ~------~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~ 139 (158)
T cd03112 66 R------GDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQT 139 (158)
T ss_pred c------hhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccH
Confidence 1 12233344444433 125799999999865432211 111 1111677888888654322 1223
Q ss_pred HHHHHHHhCCCCeEEEEEcCCC
Q psy14655 150 RGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 150 ~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+.+.+...+. +|+|+.+
T Consensus 140 ~~~~Qi~~ad~----ivlnk~d 157 (158)
T cd03112 140 EAQSQIAFADR----ILLNKTD 157 (158)
T ss_pred HHHHHHHHCCE----EEEeccc
Confidence 34456666543 6888743
No 154
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.02 E-value=0.00065 Score=51.86 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=33.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
+.+..|+||||+|..|...|...| .+|.++|.|.-...+
T Consensus 7 ltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 7 LTGLSGSGKTTLARALERRLFARG--IKVYLLDGDNLRHGL 45 (156)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTT--S-EEEEEHHHHCTTT
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CcEEEecCcchhhcc
Confidence 467789999999999999999999 999999999766443
No 155
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.01 E-value=0.0049 Score=48.58 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
-+.-|-||||.|..+|..++.+| .+|++|=+=
T Consensus 28 ~~g~GkGKtt~a~g~a~ra~g~G--~~V~ivQFl 59 (191)
T PRK05986 28 HTGNGKGKSTAAFGMALRAVGHG--KKVGVVQFI 59 (191)
T ss_pred ECCCCCChHHHHHHHHHHHHHCC--CeEEEEEEe
Confidence 34568999999999999999999 999998654
No 156
>PRK05973 replicative DNA helicase; Provisional
Probab=97.01 E-value=0.00081 Score=55.06 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=34.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++++..|+|||+++.++|...+++| .+|+++.++...
T Consensus 68 LIaG~PG~GKT~lalqfa~~~a~~G--e~vlyfSlEes~ 104 (237)
T PRK05973 68 LLGARPGHGKTLLGLELAVEAMKSG--RTGVFFTLEYTE 104 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEEeCCH
Confidence 5678899999999999999999999 999999999874
No 157
>PRK00049 elongation factor Tu; Reviewed
Probab=96.99 E-value=0.0035 Score=55.59 Aligned_cols=66 Identities=11% Similarity=0.188 Sum_probs=47.4
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.++++|||+.... .....+.. +|.+++++++...-.......+..+...+.+.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~--aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhcc--CCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 4567999999964321 12223333 899999999877656677778888888888877678999764
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.97 E-value=0.008 Score=50.42 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCCCh--h--------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--T--------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~--------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++++|||+.... . ....+.. +|.++++++.+...... ..+++.+...+.+. -+|+|+.+.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~--aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG--VDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh--CCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 4567899999864321 0 1123344 89999999876543333 45566676666664 489999764
No 159
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.95 E-value=0.0067 Score=45.39 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=41.9
Q ss_pred CCCEEEEeCCCCCCh---------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD---------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~---------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++++++|+|+.... ........ +|.+++++.+..................+.+ +-+|+|+.+.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~--~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER--ADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEcccc
Confidence 689999999974321 22234444 8999999987765554444445555555666 4589998664
No 160
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.94 E-value=0.0046 Score=59.51 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=49.9
Q ss_pred CCCCEEEEeCCCCCCh------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcC
Q psy14655 105 GPCDILFIDTPPGTGD------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~ 169 (261)
..+|++||.+.+|+-. ....++... ---+|+|......++..+.-.++.++.-++++.|+|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l-~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPL-RLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHh-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 3589999999988731 122222221 124899999999999999999999999999999999996
No 161
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.94 E-value=0.0017 Score=53.15 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=31.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+|||+++.+++...+++| .+|++++++..
T Consensus 30 i~G~~GsGKt~l~~~~~~~~~~~g--~~~~y~~~e~~ 64 (234)
T PRK06067 30 IEGDHGTGKSVLSQQFVYGALKQG--KKVYVITTENT 64 (234)
T ss_pred EECCCCCChHHHHHHHHHHHHhCC--CEEEEEEcCCC
Confidence 457789999999999999988889 99999999854
No 162
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0011 Score=51.16 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD 51 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~ 51 (261)
.+-.|+||||+|..|...|.++| ++|-++|-|--...+..-+|...
T Consensus 29 TGLSGsGKSTiA~ale~~L~~~G--~~~y~LDGDnvR~gL~~dLgFs~ 74 (197)
T COG0529 29 TGLSGSGKSTIANALEEKLFAKG--YHVYLLDGDNVRHGLNRDLGFSR 74 (197)
T ss_pred ecCCCCCHHHHHHHHHHHHHHcC--CeEEEecChhHhhcccCCCCCCh
Confidence 34569999999999999999999 99999999987776655555543
No 163
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.92 E-value=0.0017 Score=55.69 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=31.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||+|.+++...++.| .+|++||+...
T Consensus 60 I~Gp~GsGKTtLal~~~~~~~~~g--~~~vyId~E~~ 94 (325)
T cd00983 60 IYGPESSGKTTLALHAIAEAQKLG--GTVAFIDAEHA 94 (325)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CCEEEECcccc
Confidence 345789999999999999999999 99999998654
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.92 E-value=0.0022 Score=47.09 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=32.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++.+..|+||||++..+|..+...+ ..+++++++....
T Consensus 6 ~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~ 43 (148)
T smart00382 6 LIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE 43 (148)
T ss_pred EEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc
Confidence 3456789999999999999998887 7899999997754
No 165
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.91 E-value=0.0024 Score=52.26 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=31.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+--|+||||++.+++..++++| .++++++++...
T Consensus 29 i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~~~ 64 (230)
T PRK08533 29 IEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQLTT 64 (230)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCH
Confidence 456679999999999999999999 999999987654
No 166
>PRK00007 elongation factor G; Reviewed
Probab=96.90 E-value=0.0062 Score=57.96 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=49.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.++|||+... ..+..++.. +|.+++|++....-..+...++..+.+.+.+.+ +++|+.+.
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~--~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~ 139 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRV--LDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDR 139 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHH--cCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCC
Confidence 578999999997542 223445555 899999999776666677788888888898876 89999764
No 167
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.87 E-value=0.0019 Score=49.49 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=29.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.-|+||||++..|+..|..+| ++|.+|..|..
T Consensus 6 G~~gsGKTtl~~~l~~~l~~~G--~~V~viK~~~~ 38 (155)
T TIGR00176 6 GPKNSGKTTLIERLVKALKARG--YRVATIKHDHH 38 (155)
T ss_pred CCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccc
Confidence 4459999999999999999999 99999998744
No 168
>COG1159 Era GTPase [General function prediction only]
Probab=96.85 E-value=0.011 Score=49.42 Aligned_cols=104 Identities=22% Similarity=0.210 Sum_probs=68.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
++-.|||||+.=+| .| .|+.++---+|. +.....|+-.
T Consensus 13 GrPNvGKSTLlN~l------~G--~KisIvS~k~QT-TR~~I~GI~t--------------------------------- 50 (298)
T COG1159 13 GRPNVGKSTLLNAL------VG--QKISIVSPKPQT-TRNRIRGIVT--------------------------------- 50 (298)
T ss_pred cCCCCcHHHHHHHH------hc--CceEeecCCcch-hhhheeEEEE---------------------------------
Confidence 57789999998665 57 999999887774 3333332211
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC----------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG----------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~----------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
.+++.+|++|||+--. ......+.. +|.++.+++.+..--.+....++.
T Consensus 51 -------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d--vDlilfvvd~~~~~~~~d~~il~~ 109 (298)
T COG1159 51 -------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKD--VDLILFVVDADEGWGPGDEFILEQ 109 (298)
T ss_pred -------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc--CcEEEEEEeccccCCccHHHHHHH
Confidence 1678999999995322 112233333 899999998776444456667777
Q ss_pred HHhCCCCeEEEEEcCCCC
Q psy14655 155 FKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~~ 172 (261)
+++...+.+ +++|+.+.
T Consensus 110 lk~~~~pvi-l~iNKID~ 126 (298)
T COG1159 110 LKKTKTPVI-LVVNKIDK 126 (298)
T ss_pred HhhcCCCeE-EEEEcccc
Confidence 777555644 78898664
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.83 E-value=0.011 Score=53.09 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCCh-h---------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD-T---------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~-~---------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++++.|+|||+.... . ....+.. +|.+++|++....-...-..+.+.+++.+.+ +-+|+|+++.
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~--ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~ 121 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEE--ADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDG 121 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh--CCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 4578999999864430 0 1223344 8999999986653222223456667776766 4489999774
No 170
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.83 E-value=0.0022 Score=54.91 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=30.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||+|.+++...++.| .+|++||+...
T Consensus 60 I~G~~GsGKTtLaL~~~~~~~~~g--~~v~yId~E~~ 94 (321)
T TIGR02012 60 IYGPESSGKTTLALHAIAEAQKAG--GTAAFIDAEHA 94 (321)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CcEEEEcccch
Confidence 345679999999999999999999 99999998754
No 171
>PRK12739 elongation factor G; Reviewed
Probab=96.75 E-value=0.011 Score=56.30 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=48.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++++|||+... .....++.. +|.+++|++....--.....++..+.+.+.+.+ +++|+.+.
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~--~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~ 137 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRV--LDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDR 137 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHH--hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 678999999996432 223444555 899999999766555666677888888888876 89999764
No 172
>PRK15494 era GTPase Era; Provisional
Probab=96.73 E-value=0.0078 Score=52.22 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=37.9
Q ss_pred CCCCEEEEeCCCCCCh------h-H---HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD------T-H---LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~------~-~---~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++|+|||+.... . . ...+.. ||.++++++....--.....+++.+...+.+.+ +|+|+.+.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~--aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHS--ADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhh--CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 4567899999864221 0 1 112334 888888887543211222345666666666655 68899774
No 173
>PRK04296 thymidine kinase; Provisional
Probab=96.72 E-value=0.0081 Score=47.61 Aligned_cols=30 Identities=17% Similarity=0.030 Sum_probs=26.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+.+-=|+||||.+..++..++..| ++|+++
T Consensus 7 itG~~GsGKTT~~l~~~~~~~~~g--~~v~i~ 36 (190)
T PRK04296 7 IYGAMNSGKSTELLQRAYNYEERG--MKVLVF 36 (190)
T ss_pred EECCCCCHHHHHHHHHHHHHHHcC--CeEEEE
Confidence 344559999999999999999999 999999
No 174
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.69 E-value=0.008 Score=51.66 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
-||+|||+++..||..|.++| .+|.+|--.+.+
T Consensus 59 vGGtGKTP~v~~L~~~l~~~g--~~~~ilsRGYg~ 91 (325)
T PRK00652 59 VGGTGKTPVVIALAEQLQARG--LKPGVVSRGYGG 91 (325)
T ss_pred CCCCChHHHHHHHHHHHHHCC--CeEEEECCCCCC
Confidence 699999999999999999999 999999888765
No 175
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.68 E-value=0.0018 Score=51.23 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=28.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh----------cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI----------CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~----------~g~~~~VllvD~D~~~ 40 (261)
++.+.+|+||||++.++|..++. .+ .+||+|+++...
T Consensus 36 ~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~--~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 36 LIAGPPGSGKTTLALQLAAALATGRPFLGELPPRP--GRVLYISLEDSE 82 (193)
T ss_dssp EEEECSTSSHHHHHHHHHHHHHT---TT-----------EEEEESSS-H
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccC--ceEEEEeccCCH
Confidence 45678899999999999999997 45 899999999875
No 176
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.68 E-value=0.0025 Score=51.19 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=31.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+..|+|||+++.+++...+++| .+|++||++.
T Consensus 17 i~G~~GsGKT~l~~~~~~~~~~~g--~~v~yi~~e~ 50 (209)
T TIGR02237 17 IYGPPGSGKTNICMILAVNAARQG--KKVVYIDTEG 50 (209)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCC
Confidence 457889999999999999999999 9999999985
No 177
>PHA02542 41 41 helicase; Provisional
Probab=96.65 E-value=0.002 Score=58.27 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=34.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++++.-|+||||++.|+|...++.| ++|+++++++...
T Consensus 194 iIaarPgmGKTtfalniA~~~a~~g--~~Vl~fSLEM~~~ 231 (473)
T PHA02542 194 VLLAGVNVGKSLGLCSLAADYLQQG--YNVLYISMEMAEE 231 (473)
T ss_pred EEEcCCCccHHHHHHHHHHHHHhcC--CcEEEEeccCCHH
Confidence 5678899999999999999999888 9999999999764
No 178
>PF13479 AAA_24: AAA domain
Probab=96.65 E-value=0.0057 Score=49.44 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=24.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPS 42 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~ 42 (261)
++-+..|+||||++..+ + ++|+||+|....+
T Consensus 7 lIyG~~G~GKTt~a~~~-------~---k~l~id~E~g~~~ 37 (213)
T PF13479_consen 7 LIYGPPGSGKTTLAASL-------P---KPLFIDTENGSDS 37 (213)
T ss_pred EEECCCCCCHHHHHHhC-------C---CeEEEEeCCCccc
Confidence 34578899999988766 3 8999999977433
No 179
>PRK06696 uridine kinase; Validated
Probab=96.64 E-value=0.0022 Score=52.20 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=31.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+++..|+||||+|..|+..|...| .+|+.+-+|--.
T Consensus 26 ~I~G~sgsGKSTlA~~L~~~l~~~g--~~v~~~~~Ddf~ 62 (223)
T PRK06696 26 AIDGITASGKTTFADELAEEIKKRG--RPVIRASIDDFH 62 (223)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecccccc
Confidence 3678899999999999999999888 999997777543
No 180
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.61 E-value=0.0038 Score=50.56 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=24.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++-++.|+||||+|.+|+ .++++++.|...
T Consensus 16 liyG~~G~GKtt~a~~~~---------~~~~~~~~d~~~ 45 (220)
T TIGR01618 16 LIYGKPGTGKTSTIKYLP---------GKTLVLSFDMSS 45 (220)
T ss_pred EEECCCCCCHHHHHHhcC---------CCCEEEeccccc
Confidence 456899999999988774 478999999753
No 181
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.61 E-value=0.0022 Score=50.33 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=32.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+++..|+||||+|..|+..+...| .++.+|.+|--.
T Consensus 3 ~i~G~sgsGKttla~~l~~~l~~~~--~~~~~i~~Ddf~ 39 (179)
T cd02028 3 GIAGPSGSGKTTFAKKLSNQLRVNG--IGPVVISLDDYY 39 (179)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEehhhcc
Confidence 4578889999999999999999988 999999888543
No 182
>PLN03126 Elongation factor Tu; Provisional
Probab=96.59 E-value=0.011 Score=53.57 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=48.5
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.|+|+|+.... .....+.. +|.+++|+.....-.......+..+...+.+.+-+++|+.+.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~--aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 4668899999964322 22333343 899999998777666777788888888888877789999764
No 183
>KOG0744|consensus
Probab=96.57 E-value=0.0029 Score=53.44 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=84.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCCcccccCCCCCCC---CCc-CCccccccccCceeecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICY--PDKEIGILDADVFGPSIPILMNLPDTPL---LNK-DNLMIPLVNYGVKCLSMGN 76 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g--~~~~VllvD~D~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~~~~ 76 (261)
..+-.|.||||++-.||..|+-+- +-.+..+|+..... .++.||+-.+.-- +.. .+.+. ...++-|+--+.
T Consensus 182 lhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESgKlV~kmF~kI~ELv~--d~~~lVfvLIDE 258 (423)
T KOG0744|consen 182 LHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESGKLVAKMFQKIQELVE--DRGNLVFVLIDE 258 (423)
T ss_pred EeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhhhHHHHHHHHHHHHHh--CCCcEEEEEeHH
Confidence 456679999999999999998321 22788999998764 6788887654310 000 00011 012222221111
Q ss_pred C--cc-cchhh-----hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 77 L--IT-EKSAA-----IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 77 ~--~~-~~~~~-----~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
. .. ..... ........+.+...+..++ ....++|+-|+.-.+....+.+.. ||.+..|-.|+...+...
T Consensus 259 VESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-~~~NvliL~TSNl~~siD~AfVDR--ADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 259 VESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-RYPNVLILATSNLTDSIDVAFVDR--ADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-cCCCEEEEeccchHHHHHHHhhhH--hhheeecCCccHHHHHHH
Confidence 0 00 00000 0011233344556666666 566677777765445556666666 999999999988888776
Q ss_pred HH-HHHHHHhC
Q psy14655 149 QR-GYTMFKKL 158 (261)
Q Consensus 149 ~~-~~~~l~~~ 158 (261)
.+ .+..+-..
T Consensus 336 lkscieEL~~~ 346 (423)
T KOG0744|consen 336 LKSCIEELISS 346 (423)
T ss_pred HHHHHHHHHhc
Confidence 65 34444443
No 184
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.57 E-value=0.013 Score=51.93 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+.-... ....+.. +|.+++|+.....-.......+..+...+.+.+-+++|+.+.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~--~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999999643221 2222233 799999999776555666777888888888877678999764
No 185
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.57 E-value=0.017 Score=45.81 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=43.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+... ......+.. +|.+++|+..+.........++..+...+.+ +-+++|+++.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~--~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSM--VDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHh--cCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCC
Confidence 567899999996432 223344454 8999999997664444445555555556777 4588999764
No 186
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.57 E-value=0.0027 Score=51.74 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=28.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
|++.+ |+||||++..|+..|.++| ++|.+|..+
T Consensus 6 ivG~~-gsGKTtl~~~l~~~L~~~G--~~V~viK~~ 38 (229)
T PRK14494 6 VIGFK-DSGKTTLIEKILKNLKERG--YRVATAKHT 38 (229)
T ss_pred EECCC-CChHHHHHHHHHHHHHhCC--CeEEEEEec
Confidence 34554 9999999999999999999 999999754
No 187
>PRK12736 elongation factor Tu; Reviewed
Probab=96.55 E-value=0.011 Score=52.41 Aligned_cols=66 Identities=11% Similarity=0.189 Sum_probs=47.1
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.++|||+..... ....+.. +|.+++|+..+..-.......+..+...+.+.+-+++|+.+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~--~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhh--CCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 46788999999643211 2222333 899999999876555667777888888888877788999764
No 188
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.55 E-value=0.0024 Score=50.96 Aligned_cols=37 Identities=27% Similarity=0.202 Sum_probs=32.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++..|+..|...| ..++++|.|...
T Consensus 28 ~i~G~~GsGKSTla~~l~~~l~~~~--~~~~~ld~d~~~ 64 (198)
T PRK03846 28 WFTGLSGSGKSTVAGALEEALHELG--VSTYLLDGDNVR 64 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC--CCEEEEcCEeHH
Confidence 3456779999999999999998888 899999988765
No 189
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.54 E-value=0.0051 Score=55.37 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=31.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++.++|..++++| .+|++|+....
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~g--~~vlYvs~Ees 119 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAAG--GKVLYVSGEES 119 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcccc
Confidence 3567889999999999999999888 99999998643
No 190
>CHL00071 tufA elongation factor Tu
Probab=96.54 E-value=0.017 Score=51.48 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=48.1
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.++++|||+... ......+.. +|.+++++++...-.......+..+...+.+.+-+++|+.+.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~--~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 466789999996322 112333344 899999999877666777778888888888867688999764
No 191
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.51 E-value=0.0026 Score=52.70 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=32.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.|-.|+||||+|..||..+...| .+|.++|.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~--~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKN--IDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CceEEEccHHH
Confidence 6788999999999999999999888 99999987753
No 192
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.50 E-value=0.014 Score=44.42 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.+.++|||+.... ........ +|.+++|++.+..-.......+..+...+.+.+-+++|+.+.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~--ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGG--IDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhc--CCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 467889999864221 11222333 899999999765333333344444444455346689999663
No 193
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.48 E-value=0.0026 Score=51.78 Aligned_cols=38 Identities=13% Similarity=0.037 Sum_probs=30.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~ 41 (261)
++.+--|+|||+++.+++...+++ | .+|++|-++....
T Consensus 23 li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~ 61 (226)
T PF06745_consen 23 LISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPE 61 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HH
T ss_pred EEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHH
Confidence 345678999999999999999998 9 9999999987653
No 194
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.46 E-value=0.0033 Score=52.64 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=33.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++.++|..++.+ | .+|+++.++...
T Consensus 34 ~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E~~~ 71 (271)
T cd01122 34 ILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLEEPV 71 (271)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEcccCH
Confidence 567889999999999999999987 8 999999998743
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.43 E-value=0.0028 Score=54.14 Aligned_cols=34 Identities=21% Similarity=0.083 Sum_probs=30.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+|||.++..+|..++++| ++|.++.+.
T Consensus 160 ~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~~~~ 193 (306)
T PRK08939 160 YLYGDFGVGKSYLLAAIANELAKKG--VSSTLLHFP 193 (306)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEEHH
Confidence 3557789999999999999999999 999999764
No 196
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.41 E-value=0.0057 Score=50.28 Aligned_cols=37 Identities=14% Similarity=-0.060 Sum_probs=32.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+-.|+|||+++.+++...+++| .+|++|.++...
T Consensus 25 lI~G~pGsGKT~la~~~l~~~~~~g--e~~lyvs~ee~~ 61 (237)
T TIGR03877 25 LLSGGPGTGKSIFSQQFLWNGLQMG--EPGIYVALEEHP 61 (237)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEEeeCCH
Confidence 4567889999999999999988889 999999999754
No 197
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.39 E-value=0.018 Score=51.53 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=101.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC----------------CCCCCcCC-ccccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD----------------TPLLNKDN-LMIPL 64 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~ 64 (261)
|.++-..+|||++++.|++.++++| .+|.=+ -+|+-++..+.-.+. .+...... .+.|.
T Consensus 6 v~GT~S~~GKS~~~aglcRi~~~~G--~~V~PF--K~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP~ 81 (486)
T COG1492 6 VQGTTSDAGKSFLVAGLCRILARRG--YRVAPF--KSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKPC 81 (486)
T ss_pred EEeccCCcchhhhhhhhhHHHHhcC--CccCCC--chhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEeec
Confidence 5667788999999999999999999 877522 223222222211110 00111111 11223
Q ss_pred cccCceeecCCCCcccchhhh---hhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-------HHHHhhhcCCC-e
Q psy14655 65 VNYGVKCLSMGNLITEKSAAI---WRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-------HLSLIQNLFID-T 133 (261)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-------~~~~~~~~~ad-~ 133 (261)
+..+..++-.|.......... ..-......+...++.+. +.||+|++-..++.... .-..+... +| -
T Consensus 82 sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~-~dap 159 (486)
T COG1492 82 SDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEI-ADAP 159 (486)
T ss_pred CCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehh-cCCC
Confidence 333455555444433222221 112233455677777787 99999999987654311 11111111 32 3
Q ss_pred EEEEeCCCc-chHHHHHHHHHHHHhC-CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccc
Q psy14655 134 AIIITIPDT-MSLQVAQRGYTMFKKL-NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWN 211 (261)
Q Consensus 134 viiv~~~~~-~s~~~~~~~~~~l~~~-~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 211 (261)
+|+|..-+. .....+..++..+... ...+-|+++|+.+ ....++.+..+++.+. -|.+++.
T Consensus 160 vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFR-------Gd~~ll~~gik~Le~~----------tg~~vlG 222 (486)
T COG1492 160 VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFR-------GDESLLDPGLKWLEEL----------TGVPVLG 222 (486)
T ss_pred EEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeC-------CCHHHHhhHHHHHHHh----------hCCeeEe
Confidence 677777555 3334444455544432 3357899999843 3333333344333322 4555555
Q ss_pred cccCcchhhh
Q psy14655 212 FLIPLCNLII 221 (261)
Q Consensus 212 ~~ip~~~~~~ 221 (261)
++|+.....
T Consensus 223 -v~P~~~~~~ 231 (486)
T COG1492 223 -VLPYLKDAL 231 (486)
T ss_pred -ecccccccc
Confidence 477665444
No 198
>PRK12735 elongation factor Tu; Reviewed
Probab=96.38 E-value=0.021 Score=50.75 Aligned_cols=66 Identities=11% Similarity=0.193 Sum_probs=45.8
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++..++|+|||+.... .....+.. +|.+++|+.....-.....+.+..+...+.+.+.+++|+.+.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~--aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhcc--CCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 4567899999964221 12223333 799999998776545666677788888888877678999764
No 199
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.36 E-value=0.049 Score=41.52 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCCCCCh---------h----HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTGD---------T----HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~---------~----~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+.++.++|+|+.... . ....+.. +|.+++++..+.........++..+...+.+ +-+++|+.+
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~--~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~D 124 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIER--ADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWD 124 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhh--cCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccc
Confidence 3457899999863211 0 1112333 8999999986554434444555666555666 448999965
Q ss_pred C
Q psy14655 172 V 172 (261)
Q Consensus 172 ~ 172 (261)
.
T Consensus 125 l 125 (174)
T cd01895 125 L 125 (174)
T ss_pred c
Confidence 3
No 200
>PHA00729 NTP-binding motif containing protein
Probab=96.36 E-value=0.0035 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la 23 (261)
++.+..|+||||+|..+|..+.
T Consensus 21 lItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 21 VIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999875
No 201
>PRK13351 elongation factor G; Reviewed
Probab=96.34 E-value=0.02 Score=54.58 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=47.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+..+ ......+.. +|.+++|++............+..+...+.+.+ +++|+.+.
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~--aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~ 137 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRV--LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDR 137 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCC
Confidence 578899999997543 233445555 999999999766555556666777777788865 79999664
No 202
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.34 E-value=0.019 Score=53.53 Aligned_cols=65 Identities=12% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+..+ ......+.. +|.+++|+........++...+..+...+++.+ +++|+.+.
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~~~l~~--aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVERVLGM--VDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHh--CCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCC
Confidence 678899999996533 233445555 999999999877667777788888888888864 89999774
No 203
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=96.31 E-value=0.026 Score=48.59 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
-||+|||-++..||..|.++| ++|.+|---+.+.
T Consensus 45 vGGTGKTP~v~~L~~~L~~~G--~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 45 VGGTGKTPLVIWLARLLQARG--YRPAILSRGYGRK 78 (326)
T ss_pred cCCCCchHHHHHHHHHHHhcC--CceEEEcCCCCCC
Confidence 499999999999999999999 9999998777653
No 204
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.30 E-value=0.005 Score=51.33 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=31.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+..|+||||+|.++|...+++| .+|++++++.
T Consensus 40 lI~G~pGtGKT~l~~qf~~~~a~~G--e~vlyis~Ee 74 (259)
T TIGR03878 40 NITGVSDTGKSLMVEQFAVTQASRG--NPVLFVTVES 74 (259)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecC
Confidence 4577889999999999999999999 9999999984
No 205
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.30 E-value=0.028 Score=53.56 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=47.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.++|||+... ......+.. +|.+++|++....-.......++.+.+.+.+.+ +++|+.+.
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~--~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~ 139 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRV--LDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDK 139 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHH--hCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 578999999996543 223445555 899999998766544555667777777888865 79999764
No 206
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.29 E-value=0.023 Score=40.89 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCCCCCh-----------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcC
Q psy14655 105 GPCDILFIDTPPGTGD-----------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~-----------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~ 169 (261)
.+..++|+|+|+-.+. .....+.. +|.+++++..+...-.....+++.++ ..+.+-+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~--~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK--SDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT--ESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence 4556789999974431 01222223 89999999976633455666777775 33446688874
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.0049 Score=51.21 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=30.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..++.|+|||.+|+.+|..+.+.| .+|+++-.-
T Consensus 109 ~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~ 142 (254)
T COG1484 109 VLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAP 142 (254)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHH
Confidence 5678999999999999999999888 999998653
No 208
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.28 E-value=0.012 Score=53.04 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=47.7
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSL-------QVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+..... +...+.. +|..++|+......+ ..+.+.+..+...+++.+-+++|+++.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~--aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQ--ADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhh--ccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 57889999999754322 2333444 999999999876543 366677777778898877789999763
No 209
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.28 E-value=0.005 Score=53.17 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=33.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~ 41 (261)
+..+-.|+||||++..|+..|. ..| .+|.++|.|-.-+
T Consensus 3 ~l~Gl~GaGKST~~~~l~~~l~~~~g--~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 3 VLCGLPAAGKSTLARSLSATLRRERG--WAVAVITYDDIIP 41 (340)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhccC--CeEEEEccccccc
Confidence 5677889999999999999998 588 9999999997653
No 210
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.28 E-value=0.0079 Score=54.80 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=33.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++++--|+||||++.+++...+++| .+|+++-++....
T Consensus 267 li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~ 304 (484)
T TIGR02655 267 LATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRA 304 (484)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHH
Confidence 4567789999999999999999999 9999999987653
No 211
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.27 E-value=0.0041 Score=45.12 Aligned_cols=30 Identities=33% Similarity=0.300 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+.-|+||||+|..||..+ | ..++-+|-
T Consensus 3 ~I~G~~gsGKST~a~~La~~~---~--~~~i~~d~ 32 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERL---G--FPVISMDD 32 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHH---T--CEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHH---C--CeEEEecc
Confidence 567889999999999999877 6 77665444
No 212
>PF13245 AAA_19: Part of AAA domain
Probab=96.26 E-value=0.007 Score=40.34 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc----CCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC----YPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~----g~~~~VllvD~D 37 (261)
++.+--|+|||+++++++..+... + .+|+++-..
T Consensus 14 vv~g~pGtGKT~~~~~~i~~l~~~~~~~~--~~vlv~a~t 51 (76)
T PF13245_consen 14 VVQGPPGTGKTTTLAARIAELLAARADPG--KRVLVLAPT 51 (76)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCCC--CeEEEECCC
Confidence 346778999999999999999865 6 899998443
No 213
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.23 E-value=0.0055 Score=50.34 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~ 40 (261)
++++..|+|||+++.+++..++.+ | .+|+++.++...
T Consensus 17 lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~~~ 54 (242)
T cd00984 17 IIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEMSK 54 (242)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCCCH
Confidence 567888999999999999999998 8 999999999864
No 214
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.22 E-value=0.061 Score=41.18 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=40.3
Q ss_pred CCEEEEeCCCCCC---------hhHHHHhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHhC-----CCCeEEEEEcCC
Q psy14655 107 CDILFIDTPPGTG---------DTHLSLIQNLFIDTAIIITIPDTM--SLQVAQRGYTMFKKL-----NIPVAGLVMNMN 170 (261)
Q Consensus 107 yd~IiiD~~~~~~---------~~~~~~~~~~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~-----~~~~~giv~N~~ 170 (261)
..+.++|+|+... ......+.. ||.+++|++.+.. +.......++.+... +.+ +.+|+|+.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~ 124 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIER--TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKI 124 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHh--CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEch
Confidence 3789999997421 111122333 8999999996654 667777777666543 333 45899997
Q ss_pred CC
Q psy14655 171 SV 172 (261)
Q Consensus 171 ~~ 172 (261)
+.
T Consensus 125 Dl 126 (170)
T cd01898 125 DL 126 (170)
T ss_pred hc
Confidence 64
No 215
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.20 E-value=0.0078 Score=46.26 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+..|+||||++..|+..|...| ++|..|-.|...
T Consensus 8 G~~gsGKTTli~~L~~~l~~~g--~~V~~iK~~~~~ 41 (159)
T cd03116 8 GYSGSGKTTLLEKLIPALSARG--LRVAVIKHDHHD 41 (159)
T ss_pred CCCCCCHHHHHHHHHHHHHHcC--CcEEEEEecCCc
Confidence 3459999999999999999999 999999877654
No 216
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.19 E-value=0.025 Score=48.39 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
||.|||-++..||..|.++| +++.+|---+.+.
T Consensus 39 GGTGKTP~v~~La~~l~~~G--~~~~IlSRGYg~~ 71 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRG--LRVGVLSRGYGSK 71 (311)
T ss_pred CCcChHHHHHHHHHHHHHCC--CEEEEECCCCCCC
Confidence 99999999999999999999 9999998877653
No 217
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.005 Score=50.33 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=29.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcC----CCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICY----PDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g----~~~~VllvD~D~~~ 40 (261)
+.+..|+|||+++.+++......+ .+.+|++||.+...
T Consensus 24 i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~ 65 (235)
T cd01123 24 IFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTF 65 (235)
T ss_pred EECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCc
Confidence 457789999999999997755421 12799999998753
No 218
>PRK06526 transposase; Provisional
Probab=96.17 E-value=0.0027 Score=52.76 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=28.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+..|+|||++|.+++..+.+.| ++|+++.+
T Consensus 102 ll~Gp~GtGKThLa~al~~~a~~~g--~~v~f~t~ 134 (254)
T PRK06526 102 VFLGPPGTGKTHLAIGLGIRACQAG--HRVLFATA 134 (254)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHCC--CchhhhhH
Confidence 5667899999999999999999999 99988544
No 219
>PRK10218 GTP-binding protein; Provisional
Probab=96.16 E-value=0.032 Score=52.14 Aligned_cols=65 Identities=11% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.|+|||+... ......+.. +|.+++|+.....-.......+..+...+.+.+ +++|+.+.
T Consensus 66 ~~~~inliDTPG~~df~~~v~~~l~~--aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSM--VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHHHHHh--CCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCC
Confidence 578899999996532 333445555 999999999776655666677777777888865 89999764
No 220
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.14 E-value=0.027 Score=44.11 Aligned_cols=138 Identities=15% Similarity=0.096 Sum_probs=70.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccc-cCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPIL-MNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
++++==|+||||+-.++.. ....| .|+.+|-.|...-..+.- +.... . .+.-+..|-....
T Consensus 4 ii~GfLGsGKTTli~~ll~-~~~~~--~~~~vI~ne~g~~~iD~~~l~~~~---~------------~v~~l~~gcicc~ 65 (178)
T PF02492_consen 4 IITGFLGSGKTTLINHLLK-RNRQG--ERVAVIVNEFGEVNIDAELLQEDG---V------------PVVELNNGCICCT 65 (178)
T ss_dssp EEEESTTSSHHHHHHHHHH-HHTTT--S-EEEEECSTTSTHHHHHHHHTTT----------------EEEEECTTTESS-
T ss_pred EEEcCCCCCHHHHHHHHHH-HhcCC--ceeEEEEccccccccchhhhcccc---e------------EEEEecCCCcccc
Confidence 3445559999999999998 66677 999999988775333211 11100 0 0111222221111
Q ss_pred chhhhhhchHHHHHHHHHHHHhc-cC--CCCEEEEeCCCCCChhHHH-----HhhhcCCCeEEEEeCCCcc-hHHHHHH-
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQ-WG--PCDILFIDTPPGTGDTHLS-----LIQNLFIDTAIIITIPDTM-SLQVAQR- 150 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~-~~--~yd~IiiD~~~~~~~~~~~-----~~~~~~ad~viiv~~~~~~-s~~~~~~- 150 (261)
... .+...+..+. .. ++|+|||-+.+...+.... ......-+.+|.++++... .......
T Consensus 66 ~~~----------~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~ 135 (178)
T PF02492_consen 66 LRD----------DLVEALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPEL 135 (178)
T ss_dssp TTS-----------HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHH
T ss_pred cHH----------HHHHHHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhh
Confidence 111 1334444443 12 5799999998744433320 0011125778888887553 2333332
Q ss_pred HHHHHHhCCCCeEEEEEcCCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~ 171 (261)
+.+.+...+. +|+|+.+
T Consensus 136 ~~~Qi~~ADv----IvlnK~D 152 (178)
T PF02492_consen 136 LREQIAFADV----IVLNKID 152 (178)
T ss_dssp HHHHHCT-SE----EEEE-GG
T ss_pred hhhcchhcCE----EEEeccc
Confidence 3345555543 8899854
No 221
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.14 E-value=0.0051 Score=48.25 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=28.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+|||.+|..+|..+.+.| ++|+++...
T Consensus 51 ~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~~ 84 (178)
T PF01695_consen 51 ILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITAS 84 (178)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHH
T ss_pred EEEhhHhHHHHHHHHHHHHHhccCC--cceeEeecC
Confidence 3456789999999999999999999 999999865
No 222
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.11 E-value=0.033 Score=49.87 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCC----------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 105 GPCDILFIDTPPGTG----------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~----------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
.+..+.|+|||+... .....++.. ||.+++|+++...-......+.+.+++.+.+ +-+|+|+++..
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~--ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~ 120 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEE--ADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGK 120 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhh--CCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCC
Confidence 345688999986321 112223344 8999999987654333344566777777766 44899997753
No 223
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.11 E-value=0.0064 Score=51.37 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=31.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh----cC----CCCeEEEEecCCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI----CY----PDKEIGILDADVFGPS 42 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~----~g----~~~~VllvD~D~~~~~ 42 (261)
|+-+-||+||||++..|..+|+. .| -..+|++|.|....++
T Consensus 93 ~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~ 141 (402)
T COG3598 93 ILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYRED 141 (402)
T ss_pred EEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHH
Confidence 45578999999999999999984 11 1258999999887765
No 224
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0084 Score=52.34 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=31.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+++--|+||||+-.++|..+|+++ +||+|--....
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~ 132 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESL 132 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCH
Confidence 3577889999999999999999985 99999877553
No 225
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.10 E-value=0.016 Score=45.69 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=50.6
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.++|||+.... .....+.. +|.+++|+++...-.......+..+...+.+ +-+++|+++.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~--~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQ--ADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTT--SSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred cccceeecccccccceeecccceecc--cccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 7889999999975432 23334444 9999999999887778888999999999999 6699999764
No 226
>PRK04328 hypothetical protein; Provisional
Probab=96.10 E-value=0.012 Score=48.81 Aligned_cols=36 Identities=14% Similarity=-0.077 Sum_probs=31.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+-.|+|||+++.+++...+++| .++++|.++...
T Consensus 28 i~G~pGsGKT~l~~~fl~~~~~~g--e~~lyis~ee~~ 63 (249)
T PRK04328 28 LSGGPGTGKSIFSQQFLWNGLQMG--EPGVYVALEEHP 63 (249)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEeeCCH
Confidence 456778999999999999988889 999999998754
No 227
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.10 E-value=0.0078 Score=51.54 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=28.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc----CCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC----YPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~----g~~~~VllvD~D~~~ 40 (261)
+.+.-|+|||+++.++|...+.. |.+.+|++||..-..
T Consensus 101 I~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f 142 (313)
T TIGR02238 101 VFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTF 142 (313)
T ss_pred EECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCC
Confidence 45678999999999999766531 112799999998653
No 228
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.09 E-value=0.029 Score=43.73 Aligned_cols=30 Identities=10% Similarity=-0.154 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
-.|=||||-|..+|...+-+| +||++|=+=
T Consensus 29 GdGKGKTTAAlGlalRAaG~G--~rV~iiQFl 58 (178)
T PRK07414 29 SSQRNFFTSVMAQALRIAGQG--TPVLIVQFL 58 (178)
T ss_pred CCCCCchHHHHHHHHHHhcCC--CEEEEEEEe
Confidence 457899999999999999999 999999664
No 229
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.06 E-value=0.008 Score=49.43 Aligned_cols=37 Identities=30% Similarity=0.268 Sum_probs=30.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh------------cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI------------CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~------------~g~~~~VllvD~D~~~ 40 (261)
++.+-||+||||++.++|.++|. .+ .+|++++++-..
T Consensus 5 ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~--~~Vlyi~~Ed~~ 53 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEP--GRVVYLSAEDPR 53 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCC--ceEEEEECCCCH
Confidence 45678999999999999999873 33 799999998754
No 230
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.06 E-value=0.027 Score=42.54 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCChh--------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++++.++|||+..... ....+....+|.+++++...... ........+.+.+.+ +-+|+|+.+.
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~~~~-~iiv~NK~Dl 113 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLELGLP-VVVALNMIDE 113 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHcCCC-EEEEEehhhh
Confidence 4679999999643211 12222201289999999876532 223344455556666 4489999764
No 231
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.00 E-value=0.0093 Score=49.54 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=32.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
+++-.|+||||++..++..|.+.| .+|.+|+.|.-..
T Consensus 4 ItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr 40 (277)
T cd02029 4 VTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHR 40 (277)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC--CceEEEecccccc
Confidence 456789999999999999999988 9999999997653
No 232
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.99 E-value=0.16 Score=43.69 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=72.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
++==|+||||+-.++..... | +|+.+|=-++.--+.+- . ..+... ...+.=++.|=......
T Consensus 7 tGFLGsGKTTlL~~lL~~~~--g--~kiAVIVNEfGEvgID~-----~-~~l~~~-------~e~~~El~nGCICCT~r- 68 (323)
T COG0523 7 TGFLGSGKTTLLNHLLANRD--G--KKIAVIVNEFGEVGIDG-----G-ALLSDT-------GEEVVELTNGCICCTVR- 68 (323)
T ss_pred eecCCCCHHHHHHHHHhccC--C--CcEEEEEecCccccccC-----C-CccccC-------CccEEEeCCceEEEecc-
Confidence 33348999999999887776 7 89888876655432221 0 001000 00011111111111111
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-hHHHHhhh-------cCCCeEEEEeCCCcchHHH---HHHHH
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLIQN-------LFIDTAIIITIPDTMSLQV---AQRGY 152 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-~~~~~~~~-------~~ad~viiv~~~~~~s~~~---~~~~~ 152 (261)
.+....+.++.+ .+ +.+|+|||-+.+-..+ .....+.. ..-|.++.++.+....-.. ...+.
T Consensus 69 -----~dl~~~~~~L~~-~~-~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~ 141 (323)
T COG0523 69 -----DDLLPALERLLR-RR-DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAE 141 (323)
T ss_pred -----chhHHHHHHHHh-cc-CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHH
Confidence 122333555555 55 7799999999864444 12222211 1135578888866543322 23345
Q ss_pred HHHHhCCCCeEEEEEcCCCC
Q psy14655 153 TMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 153 ~~l~~~~~~~~giv~N~~~~ 172 (261)
+++...+. +|+|+.+.
T Consensus 142 ~Qia~AD~----ivlNK~Dl 157 (323)
T COG0523 142 DQLAFADV----IVLNKTDL 157 (323)
T ss_pred HHHHhCcE----EEEecccC
Confidence 56666643 89999775
No 233
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.98 E-value=0.055 Score=41.34 Aligned_cols=64 Identities=17% Similarity=0.053 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.++++.+.+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~--~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 120 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRS--ANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDL 120 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhcc--CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 368899999974321 12233444 89999999854 45677777777766543 334 5588999764
No 234
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.97 E-value=0.018 Score=46.78 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=29.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcC----CCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICY----PDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g----~~~~VllvD~D~~ 39 (261)
+.+..|+|||+++.++|...+..+ .+.+|++||.+..
T Consensus 24 I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 24 IFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 346779999999999999887542 1279999999854
No 235
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.97 E-value=0.0093 Score=49.65 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~ 41 (261)
++++..|+|||+++.++|..++.+ | .+|+++.+++...
T Consensus 23 vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm~~~ 61 (259)
T PF03796_consen 23 VIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEMSEE 61 (259)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS-HH
T ss_pred EEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCCCHH
Confidence 567888999999999999999987 6 9999999998753
No 236
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.94 E-value=0.034 Score=43.16 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc-hhhh
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK-SAAI 85 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~ 85 (261)
-|=||||-|..+|...+-+| .||+++=+==...... +...+.. .+++.+..++...... ....
T Consensus 12 ~GKGKTTAAlGlalRA~G~G--~rV~ivQFlKg~~~~G------------E~~~l~~--l~~~~~~~~g~~f~~~~~~~~ 75 (172)
T PF02572_consen 12 DGKGKTTAALGLALRAAGHG--MRVLIVQFLKGGRYSG------------ELKALKK--LPNVEIERFGKGFVWRMNEEE 75 (172)
T ss_dssp SSS-HHHHHHHHHHHHHCTT----EEEEESS--SS--H------------HHHHHGG--GT--EEEE--TT----GGGHH
T ss_pred CCCCchHHHHHHHHHHHhCC--CEEEEEEEecCCCCcC------------HHHHHHh--CCeEEEEEcCCcccccCCCcH
Confidence 36799999999999999999 9999986532211111 1111111 1235555544422111 1111
Q ss_pred hhchHHHHHHHHHHHHhccCCCCEEEEeC
Q psy14655 86 WRGLMVMQALNKLTVQVQWGPCDILFIDT 114 (261)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~yd~IiiD~ 114 (261)
.......+.+....+.+....||+||+|=
T Consensus 76 ~~~~~~~~~~~~a~~~i~~~~~dlvILDE 104 (172)
T PF02572_consen 76 EDRAAAREGLEEAKEAISSGEYDLVILDE 104 (172)
T ss_dssp HHHHHHHHHHHHHHHHTT-TT-SEEEEET
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEcc
Confidence 11122333455555556557899999996
No 237
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.86 E-value=0.029 Score=50.97 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCCh----------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD----------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~----------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+..+.|+|||+.... .....+.. ||.+++|++.+.........+.+.+...+.+ +-+|+|+++.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~--aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT--ADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh--CCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 4567889999863311 01123344 9999999996653322335566777776766 4589999775
No 238
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.78 E-value=0.036 Score=48.05 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=28.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh---c-CCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI---C-YPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~---~-g~~~~VllvD~D~~~ 40 (261)
+.+.-|+|||+++.++|...+. . |.+.+|++||..-..
T Consensus 131 I~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF 172 (344)
T PLN03187 131 AFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTF 172 (344)
T ss_pred EecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCC
Confidence 4567899999999999987663 2 223799999997643
No 239
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=95.76 E-value=0.014 Score=51.74 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=28.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
|++.| |+||||+...|...|..+| ++|.+|=-+
T Consensus 6 IvG~s-gSGKTTLiekLI~~L~~rG--~rVavIKH~ 38 (452)
T PRK14495 6 IIGWK-DAGKTGLVERLVAAIAARG--FSVSTVKHS 38 (452)
T ss_pred EEecC-CCCHHHHHHHHHHHHHhCC--CeEEEEecc
Confidence 44544 9999999999999999999 999996543
No 240
>PTZ00416 elongation factor 2; Provisional
Probab=95.75 E-value=0.04 Score=53.58 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=48.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+|-+.++|||+..+ .....++.. +|.+++|+.+...-..++..+++.+.+.+.+.+ +++|+.+.
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~--~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~ 156 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRV--TDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDR 156 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhc--CCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhh
Confidence 357799999997653 233445554 999999999877666777888888888887755 88899664
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.73 E-value=0.01 Score=48.12 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=31.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++-++.|+||||++..++..+.+.+ .++++++++...
T Consensus 42 ll~G~~G~GKT~la~~~~~~~~~~~--~~~~~i~~~~~~ 78 (226)
T TIGR03420 42 YLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLAELA 78 (226)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEeHHHHH
Confidence 4567889999999999999998888 999999987553
No 242
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.73 E-value=0.012 Score=52.75 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=33.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~ 40 (261)
++++..|+|||+++.++|..+| ++| .+|+++.+++..
T Consensus 198 viag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~ 235 (421)
T TIGR03600 198 VIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSA 235 (421)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCH
Confidence 5678899999999999999998 678 999999999754
No 243
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=95.72 E-value=0.059 Score=43.71 Aligned_cols=65 Identities=20% Similarity=0.118 Sum_probs=42.5
Q ss_pred CCCCEEEEeCCCCCChhHHHHhh-hcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQ-NLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~-~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+........... . +|.+++|... +..++..+...++.+... +.+ +-+|.|+.+.
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~--ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 48 EESTLVVIDHWEQEMWTEDSCMQYQ--GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEEEEEeCCCcchHHHhHHhhcC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 45788999998654121122222 3 8999999985 456777777777766553 334 6689999774
No 244
>KOG0635|consensus
Probab=95.70 E-value=0.019 Score=43.19 Aligned_cols=44 Identities=27% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLP 50 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~ 50 (261)
+-.|+||||+|+.|..+|-++| +-.-.+|-|--...+..-++..
T Consensus 38 GLSgSGKStlACaL~q~L~qrg--kl~Y~LDGDNvRhGLN~DL~F~ 81 (207)
T KOG0635|consen 38 GLSGSGKSTLACALSQALLQRG--KLTYILDGDNVRHGLNKDLGFK 81 (207)
T ss_pred ccCCCCchhHHHHHHHHHHhcC--ceEEEecCcccccccccccCcc
Confidence 4469999999999999999999 9999999997766554444443
No 245
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.70 E-value=0.089 Score=40.84 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=24.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+.-|+|||++|.+++.. .+ .+++++...
T Consensus 3 li~G~~~sGKS~~a~~~~~~---~~--~~~~y~at~ 33 (169)
T cd00544 3 LVTGGARSGKSRFAERLAAE---LG--GPVTYIATA 33 (169)
T ss_pred EEECCCCCCHHHHHHHHHHh---cC--CCeEEEEcc
Confidence 45677899999999999865 66 899999544
No 246
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.69 E-value=0.051 Score=42.18 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..|.+.++|+|+..... ....... ++.++++.. .+..++..+..+.+.+.+ .+.+ +-++.|+++.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 118 (180)
T cd04137 47 QDYHLEIVDTAGQDEYSILPQKYSIG--IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDL 118 (180)
T ss_pred EEEEEEEEECCChHhhHHHHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhh
Confidence 35778999998643221 1123333 777777776 444566666666554433 2344 5599999764
No 247
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=95.69 E-value=0.11 Score=41.63 Aligned_cols=66 Identities=12% Similarity=-0.001 Sum_probs=45.2
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCCC--CeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLNI--PVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~~--~~~giv~N~~~~ 172 (261)
..+.+.|.|+++.-.. .....+.. ||.+|+|.+ .+..++..+...++.+..... ..+.+|.|+.+.
T Consensus 47 ~~v~l~iwDtaGqe~~~~l~~~y~~~--ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL 117 (202)
T cd04120 47 KKIRLQIWDTAGQERFNSITSAYYRS--AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 117 (202)
T ss_pred EEEEEEEEeCCCchhhHHHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 3578899999864322 22333444 899999998 667888888887777765421 246689999775
No 248
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.68 E-value=0.012 Score=47.22 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=28.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
.+++..|+||||++..|+..+ .+ .++.+++.|..
T Consensus 10 ~I~G~sGsGKTTl~~~l~~~l--~~--~~~~~i~~D~~ 43 (209)
T PRK05480 10 GIAGGSGSGKTTVASTIYEEL--GD--ESIAVIPQDSY 43 (209)
T ss_pred EEECCCCCCHHHHHHHHHHHh--CC--CceEEEeCCcc
Confidence 357889999999999999988 45 78999999864
No 249
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=95.67 E-value=0.12 Score=41.09 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCC------Chh----HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC------CCCeEEEEEc
Q psy14655 106 PCDILFIDTPPGT------GDT----HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL------NIPVAGLVMN 168 (261)
Q Consensus 106 ~yd~IiiD~~~~~------~~~----~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~------~~~~~giv~N 168 (261)
.+.+.|+|+|+.. +.. ....+.. ||.+++|.+. +..++..+..+.+.+.+. +. .+-+|.|
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~--ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~-piiivgN 124 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN--SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEP-PIVVVGN 124 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCC-CEEEEEE
Confidence 4788899997521 111 1122344 9999999985 556777777766655432 23 4669999
Q ss_pred CCCC
Q psy14655 169 MNSV 172 (261)
Q Consensus 169 ~~~~ 172 (261)
+.+.
T Consensus 125 K~Dl 128 (198)
T cd04142 125 KRDQ 128 (198)
T ss_pred Cccc
Confidence 9775
No 250
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.63 E-value=0.038 Score=42.44 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.-|+||||+.-.+...|..+| ++|.+|--....
T Consensus 10 ~k~SGKTTLie~lv~~L~~~G--~rVa~iKH~hh~ 42 (161)
T COG1763 10 YKNSGKTTLIEKLVRKLKARG--YRVATVKHAHHD 42 (161)
T ss_pred cCCCChhhHHHHHHHHHHhCC--cEEEEEEecCCC
Confidence 448999999999999999999 999999766654
No 251
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.62 E-value=0.016 Score=48.53 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=26.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+++|--|+||||+|..|+..+...+ .+|.+|+-|.
T Consensus 5 il~G~P~SGKTt~a~~L~~~~~~~~--~~v~~i~~~~ 39 (270)
T PF08433_consen 5 ILCGLPCSGKTTRAKELKKYLEEKG--KEVVIISDDS 39 (270)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THH
T ss_pred EEEcCCCCcHHHHHHHHHHHHHhcC--CEEEEEcccc
Confidence 6778899999999999999999988 9999999543
No 252
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.62 E-value=0.025 Score=48.58 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=29.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcC----CCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICY----PDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g----~~~~VllvD~D~~~ 40 (261)
+.+..|+|||+++.++|...+..+ .+.+|++||++...
T Consensus 107 i~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f 148 (317)
T PRK04301 107 FYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTF 148 (317)
T ss_pred EECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCc
Confidence 456789999999999998877532 12599999998743
No 253
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.61 E-value=0.047 Score=41.58 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC-CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN-IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~giv~N~~~~ 172 (261)
....+.++|+|+... ......+.. +|.++++.+.+ ..+...+..+++.+.... -..+.+|.|+.+.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWES--PSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 456889999985321 122233333 89999999854 455666666666665542 1235688999664
No 254
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.61 E-value=0.015 Score=49.74 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=29.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc----CCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC----YPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~----g~~~~VllvD~D~~~ 40 (261)
+.+.-|+|||+++.++|...+.. |.+.+|++||..-..
T Consensus 100 i~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f 141 (310)
T TIGR02236 100 VFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTF 141 (310)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCC
Confidence 46778999999999999887641 111599999998653
No 255
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.58 E-value=0.064 Score=50.20 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=42.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++|.+.|+|||+..+ ......+.. ||.+++|++.+...-......+..+...+.+ +-+|+|+.+.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~--aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAA--CEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCC
Confidence 468899999996543 223344555 9999999997654323333334444455777 5589999774
No 256
>PRK05642 DNA replication initiation factor; Validated
Probab=95.57 E-value=0.013 Score=48.14 Aligned_cols=35 Identities=17% Similarity=0.033 Sum_probs=31.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..++.|+|||.++..++..+.+.| ++|++++++-
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeHHH
Confidence 4668899999999999999998888 9999999864
No 257
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.56 E-value=0.02 Score=52.55 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=32.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~ 41 (261)
++.+-.|+||||++.+++...+++ | .+|++|.++....
T Consensus 35 li~G~pGsGKT~l~~qf~~~~~~~~g--e~~lyis~ee~~~ 73 (509)
T PRK09302 35 LVSGTAGTGKTLFALQFLVNGIKRFD--EPGVFVTFEESPE 73 (509)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhcC--CCEEEEEccCCHH
Confidence 345678999999999999988887 8 9999999998654
No 258
>PRK12377 putative replication protein; Provisional
Probab=95.55 E-value=0.016 Score=47.97 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=30.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+|||+++..+|..+.+.| ++|+++...
T Consensus 105 ~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~ 138 (248)
T PRK12377 105 VFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVP 138 (248)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHH
Confidence 4567789999999999999999999 999998774
No 259
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.55 E-value=0.15 Score=40.58 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC-CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL-NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+. +..++..+...++.+... ....+.+|.|+.+.
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~--a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRG--THGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCC--CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 35688999986432 222333444 8888888885 556777777777766553 22235588999764
No 260
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.54 E-value=0.012 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.168 Sum_probs=27.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCe----EEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKE----IGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~----VllvD~D~ 38 (261)
+++-.|+||||+|..|+..|.+.| .+ +.++..|-
T Consensus 4 I~G~sgSGKTTla~~L~~~L~~~~--~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 4 IAGPSGSGKTTLAKRLAQILNKRG--IPAMEMDIILSLDD 41 (194)
T ss_dssp EEESTTSSHHHHHHHHHHHHTTCT--TTCCCSEEEEEGGG
T ss_pred EECCCCCCHHHHHHHHHHHhCccC--cCccceeEEEeecc
Confidence 567789999999999999999888 65 55665553
No 261
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.50 E-value=0.026 Score=53.85 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=31.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+-.|+||||++.+++...++.| .+|++||.....
T Consensus 65 I~G~~GsGKTtLal~~~~~a~~~G--~~v~yId~E~t~ 100 (790)
T PRK09519 65 IYGPESSGKTTVALHAVANAQAAG--GVAAFIDAEHAL 100 (790)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CcEEEECCccch
Confidence 456779999999999999998999 999999998764
No 262
>PRK08727 hypothetical protein; Validated
Probab=95.49 E-value=0.014 Score=47.79 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=31.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+..|+|||.++..++..+.+.| ++|.++.++-
T Consensus 45 ~l~G~~G~GKThL~~a~~~~~~~~~--~~~~y~~~~~ 79 (233)
T PRK08727 45 YLSGPAGTGKTHLALALCAAAEQAG--RSSAYLPLQA 79 (233)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEeHHH
Confidence 5678899999999999999999999 9999998754
No 263
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.48 E-value=0.33 Score=38.87 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=27.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+--|+||||+..+++..+. .+ .+|.++..|+.
T Consensus 27 ~~G~~gsGKTTli~~l~~~~~-~~--~~v~v~~~~~~ 60 (207)
T TIGR00073 27 FMSSPGSGKTTLIEKLIDNLK-DE--VKIAVIEGDVI 60 (207)
T ss_pred EECCCCCCHHHHHHHHHHHHh-cC--CeEEEEECCCC
Confidence 445669999999999998774 45 89999998875
No 264
>PRK15453 phosphoribulokinase; Provisional
Probab=95.45 E-value=0.019 Score=48.15 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=31.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+-.|+||||++..++..|...+ .++.+++.|.-.
T Consensus 10 ItG~SGsGKTTva~~l~~if~~~~--~~~~vi~~D~yh 45 (290)
T PRK15453 10 VTGSSGAGTTTVKRAFEKIFRREN--INAAVVEGDSFH 45 (290)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcC--CCeEEEeccccc
Confidence 456779999999999999998888 899999999765
No 265
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=95.45 E-value=0.075 Score=40.52 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+++.++|||+..... ....... +|.+++|+.++..........+..+...+.+ +.+|+|+.+.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~--~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASL--TDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhh--cCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence 57899999999643211 2223333 8999999998765444555556666667777 5588999664
No 266
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.45 E-value=0.022 Score=46.44 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=31.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+.-|+||||++.+++...++.| .+|+++.++...
T Consensus 24 ~i~G~~G~GKT~l~~~~~~~~~~~g--~~~~~is~e~~~ 60 (229)
T TIGR03881 24 AVTGEPGTGKTIFCLHFAYKGLRDG--DPVIYVTTEESR 60 (229)
T ss_pred EEECCCCCChHHHHHHHHHHHHhcC--CeEEEEEccCCH
Confidence 3567789999999999998888888 999999997654
No 267
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.44 E-value=0.017 Score=45.37 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=31.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++..|+..+...| ..++++|.|.-.
T Consensus 22 ~i~G~~GsGKstla~~l~~~l~~~~--~~~~~l~~d~~r 58 (184)
T TIGR00455 22 WLTGLSGSGKSTIANALEKKLESKG--YRVYVLDGDNVR 58 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CcEEEECChHHH
Confidence 3556679999999999999998888 889999887644
No 268
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.44 E-value=0.015 Score=52.38 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=31.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+..|+|||+++..+|..+.+.+++.+|++++++-
T Consensus 134 ~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 134 FIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred EEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 5667889999999999999998875558999998753
No 269
>KOG0460|consensus
Probab=95.43 E-value=0.049 Score=46.51 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=52.1
Q ss_pred CEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 108 DILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 108 d~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.|-=+|||+..+...-++.-++..|..|+|+..+..-+-++..-+-..+..+.+.+.+.+|+++.
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~ 182 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDL 182 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccc
Confidence 44457999876655544444444799999999999999999998888899999999999999775
No 270
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.42 E-value=0.017 Score=49.87 Aligned_cols=35 Identities=20% Similarity=0.106 Sum_probs=30.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+.-|+|||+++..+|..+...| ++|+++.++-
T Consensus 187 ll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~ 221 (329)
T PRK06835 187 LFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADE 221 (329)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHH
Confidence 4557789999999999999999999 9999998753
No 271
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.40 E-value=0.022 Score=46.23 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=29.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh--cCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI--CYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~--~g~~~~VllvD~D~~ 39 (261)
+++..|+||||+|..|+..|.. .+ .+|.+|-.|-.
T Consensus 4 I~G~sGSGKTTla~~L~~~l~~~~~~--~~v~vi~~D~f 40 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLSRWPDH--PNVELITTDGF 40 (220)
T ss_pred eeCCCCCCHHHHHHHHHHHHhhcCCC--CcEEEEecCcc
Confidence 4577899999999999999986 45 78888888855
No 272
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.39 E-value=0.035 Score=44.39 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=57.1
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhhh
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAI 85 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 85 (261)
--|.|||-++..+++-+-.+| ++|.+|-..... ...+-.++. -.. +.....-...+.++|.... ...
T Consensus 36 d~~tGKSvLsqr~~YG~L~~g--~~v~yvsTe~T~--refi~qm~s-l~y---dv~~~~l~G~l~~~~~~~~-----~~~ 102 (235)
T COG2874 36 DNGTGKSVLSQRFAYGFLMNG--YRVTYVSTELTV--REFIKQMES-LSY---DVSDFLLSGRLLFFPVNLE-----PVN 102 (235)
T ss_pred CCCccHHHHHHHHHHHHHhCC--ceEEEEEechhH--HHHHHHHHh-cCC---CchHHHhcceeEEEEeccc-----ccc
Confidence 458999999999999999999 999999865432 111111110 000 0111112234556664222 112
Q ss_pred hhchHHHHHHHHHHHHhccCCCCEEEEeCC
Q psy14655 86 WRGLMVMQALNKLTVQVQWGPCDILFIDTP 115 (261)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~ 115 (261)
|........|..+++..+.-++|+||||+=
T Consensus 103 ~~~~~~~~~L~~l~~~~k~~~~dViIIDSl 132 (235)
T COG2874 103 WGRRSARKLLDLLLEFIKRWEKDVIIIDSL 132 (235)
T ss_pred cChHHHHHHHHHHHhhHHhhcCCEEEEecc
Confidence 222334445666777776678999999984
No 273
>PRK09183 transposase/IS protein; Provisional
Probab=95.38 E-value=0.019 Score=47.89 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=28.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+.-+.-|+|||+++..+|..+...| ++|+++++
T Consensus 106 ~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~~ 138 (259)
T PRK09183 106 VLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTTA 138 (259)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeH
Confidence 3456789999999999999988888 99999863
No 274
>PRK06762 hypothetical protein; Provisional
Probab=95.36 E-value=0.014 Score=44.94 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=27.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+.-|+||||+|..|+..+ + ..+.+++.|.-.
T Consensus 6 ~i~G~~GsGKST~A~~L~~~l---~--~~~~~i~~D~~r 39 (166)
T PRK06762 6 IIRGNSGSGKTTIAKQLQERL---G--RGTLLVSQDVVR 39 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CCeEEecHHHHH
Confidence 467888999999999999887 5 567888876543
No 275
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.35 E-value=0.019 Score=46.79 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=31.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+|||+++..++..+...| .++.++++...
T Consensus 46 ~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~ 81 (227)
T PRK08903 46 YLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASP 81 (227)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHh
Confidence 4678889999999999999998888 99999998654
No 276
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.30 E-value=0.02 Score=44.56 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=29.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..++..|...+ ..+.++|.|.
T Consensus 11 ~i~G~~GsGKst~a~~l~~~l~~~~--~~~~~~~~d~ 45 (176)
T PRK05541 11 WITGLAGSGKTTIAKALYERLKLKY--SNVIYLDGDE 45 (176)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEecHH
Confidence 4566779999999999999999888 8888988654
No 277
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.27 E-value=0.03 Score=36.43 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=25.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+.+--|+||||++..|+..| .+ .++.++|-
T Consensus 4 i~G~~gsGKst~~~~l~~~l--~~--~~~~~i~~ 33 (69)
T cd02019 4 ITGGSGSGKSTVAKKLAEQL--GG--RSVVVLDE 33 (69)
T ss_pred EECCCCCCHHHHHHHHHHHh--cC--CCEEEEeE
Confidence 45677999999999999999 55 78888776
No 278
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.26 E-value=0.2 Score=39.25 Aligned_cols=66 Identities=11% Similarity=-0.000 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|.|+++.... .....+.. +|.++++.+. +..++..+..+++.+.... ...+.++.|+.+.
T Consensus 47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~--~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRG--AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEEECCCcHHHHhhHHHHccC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 3467889999864322 22233344 8999999985 4466666666666665432 1246789999664
No 279
>PRK05595 replicative DNA helicase; Provisional
Probab=95.25 E-value=0.021 Score=51.48 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=32.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~ 40 (261)
++++.-|+|||+++.|+|..+| ++| .+|+++.+.+..
T Consensus 205 viaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlEms~ 242 (444)
T PRK05595 205 LIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLEMSK 242 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecCCCH
Confidence 5678889999999999999877 568 999999998754
No 280
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.24 E-value=0.021 Score=42.13 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=31.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++..++..+...+ .++..+++....
T Consensus 23 ~i~G~~G~GKT~l~~~i~~~~~~~~--~~v~~~~~~~~~ 59 (151)
T cd00009 23 LLYGPPGTGKTTLARAIANELFRPG--APFLYLNASDLL 59 (151)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcCC--CCeEEEehhhhh
Confidence 4567889999999999999998777 899999887554
No 281
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=95.22 E-value=0.05 Score=50.73 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=45.3
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+.-.. .....+.. +|.+++|+..+......+...+..+...+.+.+-+++|+++.
T Consensus 48 ~~~~v~~iDtPGhe~f~~~~~~g~~~--aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 48 PDYRLGFIDVPGHEKFISNAIAGGGG--IDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhcc--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3477899999864221 12222333 899999999876555566666677777788867799999764
No 282
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.22 E-value=0.052 Score=41.98 Aligned_cols=65 Identities=18% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCCC---CeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLNI---PVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~---~~~giv~N~~~~ 172 (261)
.+.+.|.|+|+.... .....+.. +|.+++|.+. +..+.......++.+.+... ..+-+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~--ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRG--AQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 467889999964322 22233344 8999999986 44577777777776543221 246689999764
No 283
>PRK08506 replicative DNA helicase; Provisional
Probab=95.18 E-value=0.023 Score=51.57 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=34.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
|+++.-|+|||+++.|+|..+++.| .+|+++-+.+...
T Consensus 196 vIaarpg~GKT~fal~ia~~~~~~g--~~V~~fSlEMs~~ 233 (472)
T PRK08506 196 IIAARPSMGKTTLCLNMALKALNQD--KGVAFFSLEMPAE 233 (472)
T ss_pred EEEcCCCCChHHHHHHHHHHHHhcC--CcEEEEeCcCCHH
Confidence 5788899999999999999999888 9999999998653
No 284
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=95.16 E-value=0.085 Score=49.35 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..|.+.|+|||+... ......+.. ||.+++|++.+..........+....+.+.+ +-+|+|+.+.
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~--aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl 134 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAA--CEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDL 134 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHh--CCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCC
Confidence 357899999997543 223345555 9999999997653322233333333345666 5589999774
No 285
>PRK08760 replicative DNA helicase; Provisional
Probab=95.15 E-value=0.022 Score=51.80 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=33.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~ 41 (261)
|+++..|+||||++.|+|..+|. .| .+|+++-+++...
T Consensus 233 vIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~ 271 (476)
T PRK08760 233 ILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSAS 271 (476)
T ss_pred EEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHH
Confidence 57888999999999999999985 47 9999999998653
No 286
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.12 E-value=0.029 Score=45.59 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=31.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+.-|+|||+++.+++...+++| .+|++++++...
T Consensus 21 i~G~~G~GKt~~~~~~~~~~~~~g--~~~~y~s~e~~~ 56 (224)
T TIGR03880 21 VIGEYGTGKTTFSLQFLYQGLKNG--EKAMYISLEERE 56 (224)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCH
Confidence 455679999999999999988889 999999998754
No 287
>PRK06893 DNA replication initiation factor; Validated
Probab=95.12 E-value=0.021 Score=46.61 Aligned_cols=34 Identities=9% Similarity=-0.022 Sum_probs=30.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..++-|+|||+++..+|..+.+++ .+|.++.++
T Consensus 43 ~l~G~~G~GKThL~~ai~~~~~~~~--~~~~y~~~~ 76 (229)
T PRK06893 43 YIWGGKSSGKSHLLKAVSNHYLLNQ--RTAIYIPLS 76 (229)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CCeEEeeHH
Confidence 4568889999999999999999999 999999985
No 288
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.12 E-value=0.025 Score=49.63 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=31.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++..+|..+++.| .+|++|+....
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~EEs 121 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGEES 121 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCcC
Confidence 4567789999999999999999998 99999998743
No 289
>PTZ00035 Rad51 protein; Provisional
Probab=95.11 E-value=0.035 Score=48.14 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=27.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh------cCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI------CYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~------~g~~~~VllvD~D~~ 39 (261)
+.+.-|+||||++..++..... .+ .+|++||....
T Consensus 123 I~G~~GsGKT~l~~~l~~~~qlp~~~gg~~--g~vvyIdtE~~ 163 (337)
T PTZ00035 123 LFGEFRTGKTQLCHTLCVTCQLPIEQGGGE--GKVLYIDTEGT 163 (337)
T ss_pred EECCCCCchhHHHHHHHHHhccccccCCCC--ceEEEEEccCC
Confidence 4567899999999999877652 34 79999998754
No 290
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.11 E-value=0.23 Score=37.83 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+-|+|+|+... ......+.. +|.++++.+. +..++..+...+..+... +.+ +-+|.|+.+.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~--~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRG--AHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCc--CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 45778899986432 222233344 8999999984 445666666666666543 234 5578898653
No 291
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=95.10 E-value=0.084 Score=42.55 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCC-----CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLN-----IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~-----~~~~giv~N~~~~ 172 (261)
.+.+.|.|+++... ......+.. +|.+++|.+ .+..++..+...++.+.+.. ...+.+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~--ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYG--AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 46788999986321 222233444 999999998 44567777777777666532 1246689999775
No 292
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.09 E-value=0.025 Score=44.97 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=27.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+++-.|+||||++..|+..+ .+ .++.++.+|.-
T Consensus 4 i~G~~GsGKSTl~~~l~~~l--~~--~~~~v~~~D~~ 36 (198)
T cd02023 4 IAGGSGSGKTTVAEEIIEQL--GN--PKVVIISQDSY 36 (198)
T ss_pred EECCCCCCHHHHHHHHHHHh--CC--CCeEEEEeccc
Confidence 56778999999999999988 45 68888888853
No 293
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.09 E-value=0.042 Score=50.48 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=31.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+--|+|||+++.+++...+++| .+|++|.++...
T Consensus 278 i~G~~G~GKT~l~~~~~~~~~~~g--~~~~yis~e~~~ 313 (509)
T PRK09302 278 VSGATGTGKTLLASKFAEAACRRG--ERCLLFAFEESR 313 (509)
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCCH
Confidence 456789999999999999999999 999999998653
No 294
>PF05729 NACHT: NACHT domain
Probab=95.08 E-value=0.017 Score=44.08 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=23.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g 26 (261)
+++.+.+|+||||++..++..++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 36789999999999999999999876
No 295
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.06 E-value=0.19 Score=45.18 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=42.4
Q ss_pred CCCCEEEEeCCCCCC---------h----hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG---------D----THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~---------~----~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+.++.++|||+... . .....+.. +|.+++|++.+.........++..+...+.+. -+++|+.+
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~-ivv~NK~D 295 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIER--ADVVLLVIDATEGITEQDLRIAGLALEAGRAL-VIVVNKWD 295 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHH--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcE-EEEEECcc
Confidence 456789999986321 0 01223444 89999999977654455556667776667664 48999966
Q ss_pred C
Q psy14655 172 V 172 (261)
Q Consensus 172 ~ 172 (261)
.
T Consensus 296 l 296 (435)
T PRK00093 296 L 296 (435)
T ss_pred C
Confidence 4
No 296
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.06 E-value=0.038 Score=47.95 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=28.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh---c-CCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI---C-YPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~---~-g~~~~VllvD~D~~~ 40 (261)
+.+..|+|||+++.++|...+. . |.+.+|++||..-..
T Consensus 128 i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f 169 (342)
T PLN03186 128 IYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTF 169 (342)
T ss_pred EECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCc
Confidence 4567899999999999976552 2 212589999999754
No 297
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.04 E-value=0.23 Score=37.53 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHh-CC-CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKK-LN-IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-~~-~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.+++|...+. .+...+...+..+.. .+ -..+.++.|+.+.
T Consensus 48 ~~~l~~~D~~G~~~~~~~~~~~~~~--~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 48 TVRLQLWDTAGQERFRSLIPSYIRD--SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 356889999864322 12233444 899999998544 456666666665543 23 1246689998664
No 298
>PRK08116 hypothetical protein; Validated
Probab=95.00 E-value=0.03 Score=46.89 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=30.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+|||.++..+|..|.++| .+|++++..
T Consensus 118 ~l~G~~GtGKThLa~aia~~l~~~~--~~v~~~~~~ 151 (268)
T PRK08116 118 LLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFP 151 (268)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHH
Confidence 4567789999999999999999989 999999853
No 299
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.98 E-value=0.2 Score=44.93 Aligned_cols=64 Identities=16% Similarity=0.075 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCCCh---------h----HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD---------T----HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~---------~----~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+..+.++|||+.... . ....+.. ||.+++|++........-..++..+.+.+.+ +-+|+|+.+.
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl 295 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIER--ADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDL 295 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHh--CCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECccc
Confidence 447899999963210 0 1223444 8999999987654444444566666666666 5589999764
No 300
>PRK05439 pantothenate kinase; Provisional
Probab=94.97 E-value=0.035 Score=47.36 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=30.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+++-.|+||||+|..|+..|.+...+.+|.+|-.|---
T Consensus 91 IaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 91 IAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 56788999999999999999874223889999998653
No 301
>PRK06749 replicative DNA helicase; Provisional
Probab=94.95 E-value=0.025 Score=50.66 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=34.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
|+++.-|+|||+++.|+|..+|++| ++|+++-+.+..
T Consensus 190 iIaarPgmGKTafal~ia~~~a~~g--~~v~~fSlEMs~ 226 (428)
T PRK06749 190 VLGARPSMGKTAFALNVGLHAAKSG--AAVGLFSLEMSS 226 (428)
T ss_pred EEEeCCCCCchHHHHHHHHHHHhcC--CCEEEEEeeCCH
Confidence 6778889999999999999999988 999999999875
No 302
>PF13173 AAA_14: AAA domain
Probab=94.93 E-value=0.024 Score=41.70 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=29.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+--||||||++.+++..+. .. .+++.+|+|-..
T Consensus 6 ~l~G~R~vGKTtll~~~~~~~~-~~--~~~~yi~~~~~~ 41 (128)
T PF13173_consen 6 ILTGPRGVGKTTLLKQLAKDLL-PP--ENILYINFDDPR 41 (128)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cc--ccceeeccCCHH
Confidence 3456669999999999998887 44 899999999664
No 303
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.93 E-value=0.26 Score=37.50 Aligned_cols=65 Identities=12% Similarity=0.031 Sum_probs=40.9
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCCC--CeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLNI--PVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. ++.++++.+. +..+...+...++.+..... ..+-+|.|+.+.
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRG--AVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35788999986432 122233343 7888888874 56777777777776655321 246688999664
No 304
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.93 E-value=0.0076 Score=50.13 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=29.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHh----cCCCCeEEEEecCCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKI----CYPDKEIGILDADVFGP 41 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~----~g~~~~VllvD~D~~~~ 41 (261)
.+-.|+|||.++.+||..... .|.+.+|++||.+-..+
T Consensus 44 ~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~ 85 (256)
T PF08423_consen 44 VGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFS 85 (256)
T ss_dssp EESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-
T ss_pred EEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCC
Confidence 356799999999999987653 22348999999998764
No 305
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.017 Score=45.93 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=32.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++++=.|+||||.|-+||..|.+.+ .+|.-+..|+..
T Consensus 5 IlTGyPgsGKTtfakeLak~L~~~i--~~vi~l~kdy~~ 41 (261)
T COG4088 5 ILTGYPGSGKTTFAKELAKELRQEI--WRVIHLEKDYLR 41 (261)
T ss_pred EEecCCCCCchHHHHHHHHHHHHhh--hhccccchhhhh
Confidence 5677889999999999999999999 888888777654
No 306
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.91 E-value=0.27 Score=37.19 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.++|+|+.... .....+.. +|.++++.++.. .+...+..++..+... +.+ +-++.|+.+.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~ 117 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRG--AVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDL 117 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 457889999864321 12233333 899999988544 5676666666665542 344 6688998663
No 307
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.91 E-value=0.16 Score=40.62 Aligned_cols=35 Identities=17% Similarity=0.373 Sum_probs=27.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+..|+||||+...+...+... .++.++..|...
T Consensus 6 i~G~~GsGKTTll~~l~~~l~~~---~~~~~~~~d~~~ 40 (199)
T TIGR00101 6 VAGPVGSGKTALIEALTRALRQK---YQLAVITNDIYT 40 (199)
T ss_pred EECCCCCCHHHHHHHHHHhhCcC---CcEEEEeCCcCC
Confidence 45788999999999999887654 467788877654
No 308
>KOG1423|consensus
Probab=94.91 E-value=0.066 Score=45.14 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=39.8
Q ss_pred CCCCEEEEeCCCCCC--------------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCC
Q psy14655 105 GPCDILFIDTPPGTG--------------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMN 170 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--------------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~ 170 (261)
.++.+|++|||+-++ .....++.. ||.|+++.+...+.-.---+++..++.+..-...+|+|+.
T Consensus 118 ~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~--AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnki 195 (379)
T KOG1423|consen 118 GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQN--ADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKI 195 (379)
T ss_pred CceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhh--CCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccch
Confidence 678899999997554 122345555 8999999986643332233456666654222233678875
Q ss_pred C
Q psy14655 171 S 171 (261)
Q Consensus 171 ~ 171 (261)
+
T Consensus 196 d 196 (379)
T KOG1423|consen 196 D 196 (379)
T ss_pred h
Confidence 5
No 309
>PRK08181 transposase; Validated
Probab=94.90 E-value=0.024 Score=47.44 Aligned_cols=33 Identities=15% Similarity=0.036 Sum_probs=29.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+..+..|+|||.++..+|..+.++| ++|+++..
T Consensus 110 ll~Gp~GtGKTHLa~Aia~~a~~~g--~~v~f~~~ 142 (269)
T PRK08181 110 LLFGPPGGGKSHLAAAIGLALIENG--WRVLFTRT 142 (269)
T ss_pred EEEecCCCcHHHHHHHHHHHHHHcC--CceeeeeH
Confidence 4567889999999999999999999 99999976
No 310
>PRK09354 recA recombinase A; Provisional
Probab=94.89 E-value=0.032 Score=48.29 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=31.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+..|+||||+|.+++...++.| .+|++||+....
T Consensus 65 I~G~~GsGKTtLal~~~~~~~~~G--~~~~yId~E~s~ 100 (349)
T PRK09354 65 IYGPESSGKTTLALHAIAEAQKAG--GTAAFIDAEHAL 100 (349)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CcEEEECCccch
Confidence 345689999999999999999999 999999998653
No 311
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.86 E-value=0.03 Score=50.56 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=31.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++++--|+||||++.++|..++++| .+|++|+....
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EEs 133 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEES 133 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcCC
Confidence 4567789999999999999999998 89999998754
No 312
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.84 E-value=0.031 Score=45.86 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+..+.-|+|||+++..+|..+.+.| ++|.++.++..
T Consensus 49 ~l~Gp~G~GKThLl~a~~~~~~~~~--~~v~y~~~~~~ 84 (235)
T PRK08084 49 YLWSREGAGRSHLLHAACAELSQRG--RAVGYVPLDKR 84 (235)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEEHHHH
Confidence 4567789999999999999999888 99999999863
No 313
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.81 E-value=0.028 Score=41.20 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=31.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-----CCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-----YPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-----g~~~~VllvD~D~~~ 40 (261)
++.+..|+|||+++.+++..+... . .+|+.+++....
T Consensus 8 ~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 49 (131)
T PF13401_consen 8 VISGPPGSGKTTLIKRLARQLNAEAEIKNH--PDVIYVNCPSSR 49 (131)
T ss_dssp EEEE-TTSSHHHHHHHHHHHHHHHHHHCCC--EEEEEEEHHHHS
T ss_pred EEEcCCCCCHHHHHHHHHHHhHHhhhccCC--CcEEEEEeCCCC
Confidence 567889999999999999999875 5 899999998776
No 314
>KOG0395|consensus
Probab=94.72 E-value=0.082 Score=42.10 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
+.+.+-|+||++... ..-...+.. +|..++|-+ .+..|.+.+..+.+.+.+. ..| +-+|.|+++.
T Consensus 49 ~~~~l~ilDt~g~~~~~~~~~~~~~~--~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl 120 (196)
T KOG0395|consen 49 EVCMLEILDTAGQEEFSAMRDLYIRN--GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDL 120 (196)
T ss_pred EEEEEEEEcCCCcccChHHHHHhhcc--CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccc
Confidence 567888999997332 222333444 777777777 8889999999998888432 234 5689999775
No 315
>PRK07933 thymidylate kinase; Validated
Probab=94.70 E-value=0.04 Score=44.50 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=28.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+-+--|+||||++..|+.+|...| .+|.++..-
T Consensus 5 iEG~dGsGKST~~~~L~~~L~~~g--~~v~~~~~P 37 (213)
T PRK07933 5 IEGVDGAGKRTLTEALRAALEARG--RSVATLAFP 37 (213)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 345569999999999999999999 999998764
No 316
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.69 E-value=0.038 Score=49.64 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~ 41 (261)
++++.-|+||||++.++|..++. .| .+|+++-++....
T Consensus 199 vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~~ 237 (434)
T TIGR00665 199 ILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSAE 237 (434)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCHH
Confidence 56788899999999999999886 57 9999999998653
No 317
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.65 E-value=0.37 Score=36.85 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|.|+|+... ......+.. +|.++++.+ .+..++..+...+..+... +.+ +-+|.|+.+.
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~--ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl 120 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRG--AMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDM 120 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCC--CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 46788999986432 222233344 899999987 4566777777766666543 233 5588898764
No 318
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.64 E-value=0.038 Score=47.78 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
=||+|||-++..||..|.++| ++|.+|---+.+.
T Consensus 66 vGGTGKTP~v~~La~~l~~~G--~~~~IlSRGYg~~ 99 (338)
T PRK01906 66 VGGTGKTPTVIALVDALRAAG--FTPGVVSRGYGAK 99 (338)
T ss_pred CCCCChHHHHHHHHHHHHHcC--CceEEEecCCCCC
Confidence 499999999999999999999 9999998887763
No 319
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=94.60 E-value=0.98 Score=39.28 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
++++-=|+||||+--++... ..| .|+.+|-.|.-.-+.
T Consensus 8 iltGFLGaGKTTll~~ll~~--~~~--~~iavi~Ne~G~~~I 45 (341)
T TIGR02475 8 IVTGFLGAGKTTLIRHLLQN--AAG--RRIAVIVNEFGDLGI 45 (341)
T ss_pred EEEECCCCCHHHHHHHHHhc--cCC--CcEEEEECCCccccc
Confidence 34455599999999998764 356 899999988775443
No 320
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.59 E-value=0.086 Score=50.64 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=47.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+|.+.|+|||+..+ ......+.. +|.+++|++....-...+..++..+.+.+.+. -+++|+.+.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~--~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRA--VDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHh--cCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 467789999997543 334455555 99999999877665566677777766667775 488999764
No 321
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=94.57 E-value=0.16 Score=41.24 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=47.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+... ......+.. +|.+++|+.....-.......++.+...+.+ +-+++|+++.
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~--aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRL--CDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHh--cCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 478899999997543 334455555 9999999997766555667777777666777 5589999764
No 322
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.054 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++++--||||||++.-+|-.|.+.| ++|.-+=+
T Consensus 9 ~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t 41 (179)
T COG1618 9 FITGRPGVGKTTLVLKIAEKLREKG--YKVGGFIT 41 (179)
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEe
Confidence 5678889999999999999999998 88865533
No 323
>PF12846 AAA_10: AAA-like domain
Probab=94.54 E-value=0.039 Score=46.48 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=30.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.++-|+||||++.++...+...| ..++++|..
T Consensus 5 ~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~ 38 (304)
T PF12846_consen 5 LILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPK 38 (304)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCC
Confidence 5668889999999999999999999 999999554
No 324
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=94.48 E-value=0.34 Score=36.70 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=41.3
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC-------CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN-------IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~-------~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+..... ....+.. +|.++++.+++ ..+...+...+..+.+.. -..+-+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKD--TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcc--CCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 45788899998643211 1222333 89999999854 456666666666555421 1246789999664
No 325
>PRK06217 hypothetical protein; Validated
Probab=94.47 E-value=0.035 Score=43.64 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=23.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+-.|+||||+|..||..+ | .+ .+|+|.
T Consensus 5 ~i~G~~GsGKSTla~~L~~~l---~--~~--~~~~D~ 34 (183)
T PRK06217 5 HITGASGSGTTTLGAALAERL---D--IP--HLDTDD 34 (183)
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--Cc--EEEcCc
Confidence 567789999999999999766 4 44 577774
No 326
>PRK08006 replicative DNA helicase; Provisional
Probab=94.47 E-value=0.047 Score=49.55 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=32.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~ 40 (261)
|+++.-|+|||++|.|+|..+|. +| ++|+++-+.+..
T Consensus 228 iIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~ 265 (471)
T PRK08006 228 IVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPG 265 (471)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCH
Confidence 56788899999999999999985 57 999999999765
No 327
>PRK06904 replicative DNA helicase; Validated
Probab=94.46 E-value=0.046 Score=49.64 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=32.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~ 40 (261)
|+++.-|+|||+++.|+|..+|. .| .+|+++-+.+..
T Consensus 225 iIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlEMs~ 262 (472)
T PRK06904 225 IVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLEMPA 262 (472)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCH
Confidence 66888999999999999999885 57 999999999765
No 328
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.45 E-value=0.05 Score=42.36 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+.-|+||||+...+...|...| .+|..|-.+..
T Consensus 11 ivG~sgsGKTTLi~~li~~l~~~g--~~vg~Ik~~~~ 45 (173)
T PRK10751 11 IAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH 45 (173)
T ss_pred EECCCCChHHHHHHHHHHHHhhcC--CeEEEEEEcCC
Confidence 346679999999999999999989 99999976554
No 329
>PRK06921 hypothetical protein; Provisional
Probab=94.43 E-value=0.048 Score=45.65 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=29.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~ 36 (261)
++.+.-|+|||+++..+|..+.++ | .+|+++..
T Consensus 121 ~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~ 154 (266)
T PRK06921 121 ALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPF 154 (266)
T ss_pred EEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEH
Confidence 345678999999999999999988 8 99999885
No 330
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=94.42 E-value=0.63 Score=39.52 Aligned_cols=132 Identities=17% Similarity=0.238 Sum_probs=75.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
+++.---+||=|++..|..+|.++| .++-++-...++ ++. .. .++. ++.++
T Consensus 117 ~vGTDcavGK~tTal~L~~~l~~~G--~~a~fvaTGQTG----imi-a~--~Gv~------------iDav~-------- 167 (301)
T PF07755_consen 117 TVGTDCAVGKMTTALELRRALRERG--INAGFVATGQTG----IMI-AG--YGVP------------IDAVP-------- 167 (301)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT----EEEEE-SHHH----HHC-HS--EC--------------GGGSB--------
T ss_pred EEccCccccHHHHHHHHHHHHHHcC--CCceEEecCCce----EEE-ec--CCee------------ccchh--------
Confidence 3455566999999999999999999 999999877553 121 10 1110 11111
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-----HHHHhhhcCCCeEEEEeCCCcchH--------HHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-----HLSLIQNLFIDTAIIITIPDTMSL--------QVA 148 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-----~~~~~~~~~ad~viiv~~~~~~s~--------~~~ 148 (261)
..+....++.++-... ++.|+||+-..+++.+. ...++.....|.+|+.-.|....+ ..+
T Consensus 168 ------~DFvaGavE~~v~~~~-~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l 240 (301)
T PF07755_consen 168 ------SDFVAGAVEALVPEAA-EEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPL 240 (301)
T ss_dssp ------GGGHHHHHHHHHHHHC-CC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---H
T ss_pred ------hhhHHHHHHHHHHhhC-cCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCH
Confidence 1223334555555555 35599999999877543 344555555899999999955444 345
Q ss_pred HHHHHHHHhC-CC----CeEEEEEcC
Q psy14655 149 QRGYTMFKKL-NI----PVAGLVMNM 169 (261)
Q Consensus 149 ~~~~~~l~~~-~~----~~~giv~N~ 169 (261)
.+.++.++.+ +. +++|+-+|.
T Consensus 241 ~~~I~l~e~la~~~~~~~VvgIslNt 266 (301)
T PF07755_consen 241 EEEIELIEALAGTKPPAKVVGISLNT 266 (301)
T ss_dssp HHHHHHHHHCCCGC---EEEEEECC-
T ss_pred HHHHHHHHHhhccCCCccEEEEEEEC
Confidence 5666666654 22 389999996
No 331
>PRK05748 replicative DNA helicase; Provisional
Probab=94.41 E-value=0.044 Score=49.46 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=33.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~ 41 (261)
++++.-|+||||++.++|...|. .| .+|+++-+.+...
T Consensus 207 vIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms~~ 245 (448)
T PRK05748 207 IVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMGAE 245 (448)
T ss_pred EEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCCHH
Confidence 56788899999999999999885 58 9999999998753
No 332
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.38 E-value=0.24 Score=38.84 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
.--|=||||-|..+|....-.| +||++|-+
T Consensus 35 TG~GKGKTTAAlG~alRa~GhG--~rv~vvQF 64 (198)
T COG2109 35 TGNGKGKTTAALGLALRALGHG--LRVGVVQF 64 (198)
T ss_pred ecCCCChhHHHHHHHHHHhcCC--CEEEEEEE
Confidence 3447899999999999999898 99999855
No 333
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.38 E-value=0.05 Score=45.30 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=35.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
++.+--|+|||+++.+++...++.| .+|++|-++.....+
T Consensus 27 lI~G~pGsGKT~f~~qfl~~~~~~g--e~vlyvs~~e~~~~l 66 (260)
T COG0467 27 LITGPPGTGKTIFALQFLYEGAREG--EPVLYVSTEESPEEL 66 (260)
T ss_pred EEEcCCCCcHHHHHHHHHHHHHhcC--CcEEEEEecCCHHHH
Confidence 4567789999999999999999999 999999999876543
No 334
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=94.36 E-value=0.27 Score=37.73 Aligned_cols=65 Identities=12% Similarity=0.069 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCCh---hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD---THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~---~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+-|+|+++.... ........ +|.++++.++ +..+...+..+++.+... +.+ +-+|.|+.+.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRN--VHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcC--CCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4578889999864321 11222333 8989999885 446777777777666543 344 5689999663
No 335
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.34 E-value=0.074 Score=45.60 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=27.3
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
..|+||||++.++.+.+.+.| ..+++||....-
T Consensus 61 ~~ssGKttLaL~~ia~~q~~g--~~~a~ID~e~~l 93 (322)
T PF00154_consen 61 PESSGKTTLALHAIAEAQKQG--GICAFIDAEHAL 93 (322)
T ss_dssp STTSSHHHHHHHHHHHHHHTT---EEEEEESSS--
T ss_pred CCCCchhhhHHHHHHhhhccc--ceeEEecCcccc
Confidence 458899999999999998888 999999997664
No 336
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.32 E-value=0.27 Score=47.11 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCCCCh----------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD----------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~----------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+..+.++|||+.... .....+.. ||.+++|++....-...-..+.+.++..+.+ +-+|+|+++.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~--aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL--ADAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh--CCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccc
Confidence 4567889999864320 11122334 8999999986543222223556677777766 4488999774
No 337
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.30 E-value=0.11 Score=44.57 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=27.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh---cC-CCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI---CY-PDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~---~g-~~~~VllvD~D~~ 39 (261)
+.+.-|+||||++.+++...+. .| .+.+|++||....
T Consensus 101 i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 101 IFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred EECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 4567899999999999975442 22 1258999999865
No 338
>PRK08840 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.053 Score=49.10 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=32.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~ 40 (261)
|+++.-|+|||+++.|+|..+|. +| ++|+++-+.+..
T Consensus 221 viaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~ 258 (464)
T PRK08840 221 IVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPA 258 (464)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCH
Confidence 56788899999999999999985 57 999999999765
No 339
>KOG0078|consensus
Probab=94.21 E-value=0.32 Score=38.64 Aligned_cols=80 Identities=9% Similarity=0.011 Sum_probs=51.2
Q ss_pred CEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCCC--CeEEEEEcCCCCCCCCCCcccc
Q psy14655 108 DILFIDTPPGT--GDTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLNI--PVAGLVMNMNSVLCPSCNHMFE 182 (261)
Q Consensus 108 d~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~~--~~~giv~N~~~~~~~~~~~~~~ 182 (261)
-+-+.|+.+.- .....+.... |+.+++|.. .+..|...+...++.+++..- -.+-+|-|+++. .....
T Consensus 62 ~lQiWDtaGQerf~ti~~sYyrg--A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~-----~~~R~ 134 (207)
T KOG0078|consen 62 KLQIWDTAGQERFRTITTAYYRG--AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL-----EEKRQ 134 (207)
T ss_pred EEEEEEcccchhHHHHHHHHHhh--cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc-----ccccc
Confidence 45566776432 2334455555 889999987 788899999998888887522 145689999773 33334
Q ss_pred cccchhHHHHHh
Q psy14655 183 LYENNLHQFEAK 194 (261)
Q Consensus 183 ~~~~~~~~~~~~ 194 (261)
+..+..+.++.+
T Consensus 135 V~~e~ge~lA~e 146 (207)
T KOG0078|consen 135 VSKERGEALARE 146 (207)
T ss_pred ccHHHHHHHHHH
Confidence 444455555554
No 340
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=94.18 E-value=0.32 Score=36.97 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|.|+|+... ......+.. +|.++++.. .+..+...+......+.+ .+.+ +-+|.|+.+.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 118 (164)
T cd04175 47 QQCMLEILDTAGTEQFTAMRDLYMKN--GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDL 118 (164)
T ss_pred EEEEEEEEECCCcccchhHHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcc
Confidence 356778999986432 222333444 888888887 445666666666665543 2455 5599999764
No 341
>PLN03118 Rab family protein; Provisional
Probab=94.17 E-value=0.17 Score=40.60 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHH-HHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGY-TMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~-~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|... +..+...+.... ..+... +.+ +.+|.|+.+.
T Consensus 60 ~~~~l~l~Dt~G~~~~~~~~~~~~~~--~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 60 KRLKLTIWDTAGQERFRTLTSSYYRN--AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEEECCCchhhHHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 346789999997533 222334444 8999999884 445555555432 233321 233 5578899764
No 342
>COG4240 Predicted kinase [General function prediction only]
Probab=94.15 E-value=0.058 Score=43.59 Aligned_cols=36 Identities=22% Similarity=0.108 Sum_probs=31.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
.+|+--|+||||+++.+-..|+..| ..+|+.+.+|-
T Consensus 54 gisGpQGSGKStls~~i~~~L~~kg-~ert~~lSLDD 89 (300)
T COG4240 54 GISGPQGSGKSTLSALIVRLLAAKG-LERTATLSLDD 89 (300)
T ss_pred EeecCCCCchhhHHHHHHHHHHHhc-ccceEEeehhh
Confidence 4677889999999999999999987 35999998885
No 343
>PRK06321 replicative DNA helicase; Provisional
Probab=94.14 E-value=0.059 Score=48.88 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=33.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~ 41 (261)
|+++.-|+|||+++.|+|..+|. .| ++|+++-+.+...
T Consensus 230 iiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLEMs~~ 268 (472)
T PRK06321 230 ILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLEMTVD 268 (472)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHH
Confidence 56788899999999999999984 57 9999999998653
No 344
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.14 E-value=0.058 Score=44.01 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=28.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEE-EecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGI-LDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vll-vD~D~~ 39 (261)
+++..|+||||++..|+..+...+ ..+.+ |.+|..
T Consensus 38 i~G~~GsGKTTl~~~L~~~l~~~~--g~~~v~i~~D~~ 73 (229)
T PRK09270 38 IAGPPGAGKSTLAEFLEALLQQDG--ELPAIQVPMDGF 73 (229)
T ss_pred EECCCCCCHHHHHHHHHHHhhhcc--CCceEEEecccc
Confidence 568899999999999999999887 66655 777653
No 345
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.05 E-value=1 Score=35.78 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++++.-|+||||+...++..+.... +.+++.++-
T Consensus 5 lI~GptGSGKTTll~~ll~~~~~~~-~~~i~t~e~ 38 (198)
T cd01131 5 LVTGPTGSGKSTTLAAMIDYINKNK-THHILTIED 38 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHhhhcC-CcEEEEEcC
Confidence 4678889999999999988887653 156666654
No 346
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=94.03 E-value=0.15 Score=46.10 Aligned_cols=65 Identities=12% Similarity=0.082 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSL-------QVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.++.+.|+|||+..... ....+.. +|.+++|+++....+ .++.+.+..+...+++.+-+++|+++
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~--aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQ--ADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhh--cCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 67899999999754322 2333333 999999999776542 46777888888889987889999966
No 347
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.01 E-value=0.32 Score=37.08 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.+.|+|+... ......+.. +|.++++.+.+. .+...+...+..+... +.+ .-+|.|+.+.
T Consensus 55 ~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~ 124 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRS--ANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDL 124 (169)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 35677889986432 222333444 899999988543 4555555555555432 344 4588999664
No 348
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.00 E-value=0.59 Score=39.07 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++.-|+||||+...+...+...+ .+++.|+
T Consensus 84 lisG~tGSGKTT~l~all~~i~~~~--~~iitiE 115 (264)
T cd01129 84 LVTGPTGSGKTTTLYSALSELNTPE--KNIITVE 115 (264)
T ss_pred EEECCCCCcHHHHHHHHHhhhCCCC--CeEEEEC
Confidence 5677889999999998888887666 8888886
No 349
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.92 E-value=0.26 Score=38.48 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
....+.++|+|+.- .......+.. ||.++++++.+. .++..+...+..+.. .+.+ +.+|+|+.+.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~--~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRC--TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 45678899998532 1222233444 899999998554 355555544443332 3444 5688999663
No 350
>PRK09165 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.071 Score=48.79 Aligned_cols=38 Identities=16% Similarity=0.255 Sum_probs=32.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc---------------CCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC---------------YPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~---------------g~~~~VllvD~D~~~~ 41 (261)
++++.-|+||||++.|+|...|+. | .+|+++-+.+...
T Consensus 221 vIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g--~~vl~fSlEMs~~ 273 (497)
T PRK09165 221 ILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNG--GVVGFFSLEMSAE 273 (497)
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCC--CeEEEEeCcCCHH
Confidence 567888999999999999999864 6 8999999988753
No 351
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=93.88 E-value=0.058 Score=44.03 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=26.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
|++.-|+.||||+...||..+..+| ++|++-
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g--~~v~~T 31 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEG--YRVLVT 31 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCC--CeEEEE
Confidence 3455678999999999999999999 999873
No 352
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=93.84 E-value=0.62 Score=37.66 Aligned_cols=65 Identities=17% Similarity=0.041 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|.|+++.-. ......... +|.+|+|.+ .+..++..+...++.+.+. +. .+.+|.|+.+.
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~-piilvgNK~Dl 129 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDV 129 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHccc--ccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC-cEEEEEEchhh
Confidence 346888999986432 112223344 888888888 4556777777777666543 33 36688999764
No 353
>PRK08118 topology modulation protein; Reviewed
Probab=93.81 E-value=0.042 Score=42.57 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=17.8
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+-+|+||||+|..|+..+
T Consensus 5 ~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 5 ILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999998766
No 354
>PTZ00301 uridine kinase; Provisional
Probab=93.81 E-value=0.1 Score=42.09 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=25.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~ 38 (261)
+++-.|+||||+|..|+..|... | ...|.++=.|.
T Consensus 8 IaG~SgSGKTTla~~l~~~l~~~~~-~~~~~vi~~D~ 43 (210)
T PTZ00301 8 ISGASGSGKSSLSTNIVSELMAHCG-PVSIGVICEDF 43 (210)
T ss_pred EECCCcCCHHHHHHHHHHHHHhhcC-CCeEEEeCCCC
Confidence 46778999999999999888643 4 23455665554
No 355
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.79 E-value=0.064 Score=38.18 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=20.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC 25 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~ 25 (261)
.+.+..|+|||+++..||..+.+.
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999864
No 356
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.77 E-value=1.2 Score=36.98 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=34.3
Q ss_pred CCCCEEEEeCCCCCChh-----HH-------HHhhhcCCCeEEEEeCCCcchHHHH-HHHHHHHHh-CCC---CeEEEEE
Q psy14655 105 GPCDILFIDTPPGTGDT-----HL-------SLIQNLFIDTAIIITIPDTMSLQVA-QRGYTMFKK-LNI---PVAGLVM 167 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~-----~~-------~~~~~~~ad~viiv~~~~~~s~~~~-~~~~~~l~~-~~~---~~~giv~ 167 (261)
+++.+.|+|||+..+.. .. ..+.....|.++++...+....... ..+++.+.+ ++. ...-+|+
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~ 156 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVL 156 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEE
Confidence 45677888887533221 00 0111111566777765544322222 244555543 232 2466899
Q ss_pred cCCCCC
Q psy14655 168 NMNSVL 173 (261)
Q Consensus 168 N~~~~~ 173 (261)
|+++..
T Consensus 157 T~~d~~ 162 (249)
T cd01853 157 THAASS 162 (249)
T ss_pred eCCccC
Confidence 987764
No 357
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.76 E-value=0.082 Score=41.64 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=27.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+-+--|+||||++..|+..|...| .+|..+.-
T Consensus 5 ieG~~GsGKtT~~~~L~~~l~~~g--~~v~~~~~ 36 (200)
T cd01672 5 FEGIDGAGKTTLIELLAERLEARG--YEVVLTRE 36 (200)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence 446679999999999999999888 99877654
No 358
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=93.75 E-value=0.16 Score=42.86 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCC
Q psy14655 9 VGKSTTTVNLATAMKICYPDKEIGILDADVFGPS 42 (261)
Q Consensus 9 vGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~ 42 (261)
.||||++.-|..++-+.+ +++|.+.+||+++.
T Consensus 110 ~Gkts~~~tL~syalk~~--~~pl~~nlDP~Qp~ 141 (424)
T COG5623 110 NGKTSFCFTLISYALKLG--KKPLFTNLDPSQPG 141 (424)
T ss_pred CCceeHHHHHHHHHHHhc--CCceEEecCCCCcc
Confidence 899999999999999999 99999999999864
No 359
>PRK05636 replicative DNA helicase; Provisional
Probab=93.74 E-value=0.076 Score=48.61 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=32.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~ 40 (261)
++++.-|+||||++.++|..+| ++| ++|+++-+.+..
T Consensus 269 iiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlEMs~ 306 (505)
T PRK05636 269 IVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLEMSK 306 (505)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEeeCCH
Confidence 5678889999999999999888 457 999999998875
No 360
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.67 E-value=0.04 Score=40.08 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.8
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++++.-|+||||+|..|+..+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 567888999999999999887
No 361
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=93.65 E-value=0.1 Score=40.96 Aligned_cols=30 Identities=30% Similarity=0.132 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
-|+||||++..|+..|...| .+ .++..-+.
T Consensus 5 DGsGKtT~~~~L~~~l~~~~--~~-~~~~~~~~ 34 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKG--YK-VIITFPPG 34 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EE-EEEEESST
T ss_pred CCCCHHHHHHHHHHHHHHcC--Cc-ccccCCCC
Confidence 49999999999999999999 88 45554444
No 362
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.63 E-value=0.091 Score=41.51 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++-+--|+||||++..|+..|...| ++|..+-.
T Consensus 7 vieG~~GsGKsT~~~~L~~~l~~~g--~~v~~~~~ 39 (195)
T TIGR00041 7 VIEGIDGAGKTTQANLLKKLLQENG--YDVLFTRE 39 (195)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeC
Confidence 3456679999999999999999999 99987654
No 363
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=93.61 E-value=0.72 Score=36.06 Aligned_cols=65 Identities=9% Similarity=-0.035 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|.|+++.... .....+.. ||.++++.+ .+..+...+...++.+.... ...+ +|.|+.+.
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~--a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pi-lVgnK~Dl 116 (182)
T cd04128 47 TEITFSIWDLGGQREFINMLPLVCND--AVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI-LVGTKYDL 116 (182)
T ss_pred EEEEEEEEeCCCchhHHHhhHHHCcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhc
Confidence 3468889999854322 12223334 889999888 55568888777777665531 1233 78999764
No 364
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=93.60 E-value=0.31 Score=39.02 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+..+.|+|||+... ......+.. +|.+++|+..+..-..........+...+.+.+-+|+|+.+.
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~--ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGAST--ADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhh--CCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 567899999996432 122233344 899999999776544455555556666666656678999764
No 365
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.56 E-value=0.095 Score=42.64 Aligned_cols=33 Identities=24% Similarity=0.146 Sum_probs=28.9
Q ss_pred CCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVF 39 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~ 39 (261)
++-|+|||+++..|...+. +.+ .+++++|..-.
T Consensus 30 G~TGsGKS~~~~~ll~~l~~~~~--~~~ii~D~~GE 63 (229)
T PF01935_consen 30 GTTGSGKSNTVKVLLEELLKKKG--AKVIIFDPHGE 63 (229)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCC--CCEEEEcCCCc
Confidence 5669999999999999999 787 99999998543
No 366
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=1.2 Score=37.94 Aligned_cols=132 Identities=17% Similarity=0.213 Sum_probs=80.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
++.---+||=|+|..|.+.+-..| .++-+|-....+ -+ . .+ .++. ++-++
T Consensus 154 vGTd~~vGKrTTa~~L~~~~~e~G--~~a~fvaTgqtg-il---~-~~--~gvv------------vdav~--------- 203 (339)
T COG3367 154 VGTDCAVGKRTTALELREAAREEG--IKAGFVATGQTG-IL---I-AD--DGVV------------VDAVV--------- 203 (339)
T ss_pred eccccccchhHHHHHHHHHHHHhC--CccceEecCcee-eE---E-ec--CceE------------ecchh---------
Confidence 344445899999999999999999 999999887553 21 1 11 0000 00001
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH----HHHhhhcCCCeEEEEeCCCcchHHH-------HHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH----LSLIQNLFIDTAIIITIPDTMSLQV-------AQRG 151 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~----~~~~~~~~ad~viiv~~~~~~s~~~-------~~~~ 151 (261)
..+....+..+.-.+...++|+|+|-..+++.+.. ...+.....|.++++-.|+.....+ +...
T Consensus 204 -----~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~leev 278 (339)
T COG3367 204 -----MDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPPLEEV 278 (339)
T ss_pred -----HHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcCCCHHHH
Confidence 01122223333333331489999999987765433 4445444479999999998766552 2333
Q ss_pred HHHHHhC-CCCeEEEEEcC
Q psy14655 152 YTMFKKL-NIPVAGLVMNM 169 (261)
Q Consensus 152 ~~~l~~~-~~~~~giv~N~ 169 (261)
+....-. +.+.+++.+|-
T Consensus 279 i~l~e~l~~a~Vvgi~lNt 297 (339)
T COG3367 279 IALYELLSNAKVVGIALNT 297 (339)
T ss_pred HHHHHHccCCcEEEEEecc
Confidence 3333332 47889999996
No 367
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=93.50 E-value=0.62 Score=35.59 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC-------CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL-------NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-------~~~~~giv~N~~~~ 172 (261)
..+.+.|.|+|+... ......+.. +|.++++... +..+...+...+..+... +.+ +-+|.|+.+.
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRG--SDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDI 126 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcC--CCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccc
Confidence 346788899986432 122233344 8888888774 455677776666544321 234 5589999664
No 368
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.058 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~ 24 (261)
.+|++-|+||||+|..||..+..
T Consensus 4 tIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 4 TISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EeccCCCCChhHHHHHHHHHhCC
Confidence 47899999999999999987743
No 369
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=93.46 E-value=0.8 Score=34.79 Aligned_cols=65 Identities=11% Similarity=-0.055 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|.|+++.... ........ +|.++++.+ .+..++..+..+++.+.... ...+-+|.|+.+.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRR--AQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcC--CcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 456778899753321 12223333 889999987 56678888877777665432 1246688999664
No 370
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.44 E-value=0.062 Score=42.45 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=22.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
.+++..|+||||+|..|+..+ ..+.+|..|
T Consensus 3 ~i~G~sgsGKTtla~~l~~~~------~~~~~i~~D 32 (187)
T cd02024 3 GISGVTNSGKTTLAKLLQRIL------PNCCVIHQD 32 (187)
T ss_pred EEECCCCCCHHHHHHHHHHHc------CCCeEEccc
Confidence 356788999999999998876 235556655
No 371
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.44 E-value=0.094 Score=38.22 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=27.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+..+.-|+||||++..+|..+ + .+++-+|+..-.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l---~--~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL---G--FPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT---T--SEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc---c--cccccccccccc
Confidence 455777999999999999987 5 788888776543
No 372
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.43 E-value=0.073 Score=43.17 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=31.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+|||.+...++.++.+..++.+|++++++.-
T Consensus 38 ~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 38 FLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 45678899999999999999988655599999998753
No 373
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.40 E-value=0.12 Score=43.80 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=29.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+++--|+||||++..|...+.+...+.+|.++..|...
T Consensus 67 IaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 67 IAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 45777999999999999888754212578888888654
No 374
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.36 E-value=0.46 Score=36.90 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=22.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+.-|+||||+|..++..+ + .++++|..
T Consensus 5 li~G~~~sGKS~~a~~l~~~~---~--~~~~~iat 34 (170)
T PRK05800 5 LVTGGARSGKSRFAERLAAQS---G--LQVLYIAT 34 (170)
T ss_pred EEECCCCccHHHHHHHHHHHc---C--CCcEeCcC
Confidence 456778999999999987653 4 56665544
No 375
>PRK07261 topology modulation protein; Provisional
Probab=93.36 E-value=0.069 Score=41.53 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=17.2
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++-+..|+||||+|..|+..+
T Consensus 4 ~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 4 AIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 355789999999999987654
No 376
>PRK13973 thymidylate kinase; Provisional
Probab=93.36 E-value=0.1 Score=42.03 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+=-|+||||.+..|+..|...| .+|....
T Consensus 10 G~dGsGKtTq~~~l~~~l~~~g--~~~~~~~ 38 (213)
T PRK13973 10 GGEGAGKSTQIRLLAERLRAAG--YDVLVTR 38 (213)
T ss_pred cCCCCCHHHHHHHHHHHHHHCC--CeEEEEE
Confidence 4459999999999999999999 9997763
No 377
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=93.35 E-value=0.81 Score=34.06 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=35.3
Q ss_pred CCCCEEEEeCCCCCChh----------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT----------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~----------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++++|+|+..... ....+.. +|.++++++.+...-..-..+... ..+.+ +-+|+|+.+.
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~ 119 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE--ADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDL 119 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh--CCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhc
Confidence 45678999998643211 1123333 899999998764222222222222 22334 6699999664
No 378
>PRK07413 hypothetical protein; Validated
Probab=93.30 E-value=0.44 Score=41.77 Aligned_cols=30 Identities=17% Similarity=0.035 Sum_probs=25.8
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCC------eEEEEecC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDK------EIGILDAD 37 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~------~VllvD~D 37 (261)
--|=||||-|..+|...+-+| . ||++|=+=
T Consensus 27 G~GKGKTTAAlGlalRA~G~G--~~~~~~~rV~ivQFl 62 (382)
T PRK07413 27 GEGKGKSQAALGVVLRTIGLG--ICEKRQTRVLLLRFL 62 (382)
T ss_pred CCCCCHHHHHHHHHHHHhcCC--CCcCCCCeEEEEEEE
Confidence 347799999999999999998 8 99998653
No 379
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=93.28 E-value=1 Score=38.74 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=71.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccc-cCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPIL-MNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
++++-=|+||||+--++... ..| .|+.+|-.|.-.-+.+.. ++... .+ +... ..| |+.+.
T Consensus 8 iltGFLGaGKTTll~~ll~~--~~~--~riaVi~NEfG~v~iD~~ll~~~~------~~-v~eL-~~G--CiCCs----- 68 (318)
T PRK11537 8 LLTGFLGAGKTTLLRHILNE--QHG--YKIAVIENEFGEVSVDDQLIGDRA------TQ-IKTL-TNG--CICCS----- 68 (318)
T ss_pred EEEECCCCCHHHHHHHHHhc--ccC--CcccccccCcCCccccHHHHhCcC------ce-EEEE-CCC--EEEEc-----
Confidence 45666799999999998754 356 899999888754333211 11000 00 0000 011 11111
Q ss_pred chhhhhhchHHHHHHHHHHHHhcc--CCCCEEEEeCCCCCChhHH-HHh-h------hcCCCeEEEEeCCCcchH--HHH
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQW--GPCDILFIDTPPGTGDTHL-SLI-Q------NLFIDTAIIITIPDTMSL--QVA 148 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~--~~yd~IiiD~~~~~~~~~~-~~~-~------~~~ad~viiv~~~~~~s~--~~~ 148 (261)
. .......+.+++..... ..+|+|||.+.+..++... ..+ . ...-+.++.++++..... ...
T Consensus 69 ~------~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~ 142 (318)
T PRK11537 69 R------SNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF 142 (318)
T ss_pred c------CchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc
Confidence 0 11233445555544331 1599999999865443221 111 0 001366888887653221 111
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 149 QRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 149 ~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
....+.+...+. +|+|+.+.
T Consensus 143 ~~~~~Qi~~AD~----IvlnK~Dl 162 (318)
T PRK11537 143 TIAQSQVGYADR----ILLTKTDV 162 (318)
T ss_pred HHHHHHHHhCCE----EEEecccc
Confidence 223345555543 88998664
No 380
>PRK07004 replicative DNA helicase; Provisional
Probab=93.26 E-value=0.091 Score=47.60 Aligned_cols=38 Identities=13% Similarity=0.345 Sum_probs=33.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~ 41 (261)
|+++.-|+|||+++.++|..+|. .| ++|+++-+.+...
T Consensus 217 viaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~ 255 (460)
T PRK07004 217 IVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGT 255 (460)
T ss_pred EEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHH
Confidence 56788899999999999998885 67 9999999998753
No 381
>COG1160 Predicted GTPases [General function prediction only]
Probab=93.24 E-value=1.7 Score=38.83 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCC-h--h--------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG-D--T--------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~-~--~--------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
....+++|||++-.. . . +..++.- ||.++.|++....-...=..+.+.|+..+.+ +-+|+|+++.
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e--ADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~ 124 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEE--ADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDN 124 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccC
Confidence 566799999985431 1 1 1223333 8999999986664344444566777755555 5589999664
No 382
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.15 E-value=0.1 Score=40.52 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=29.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+|||++...+...+.+.+ .-++.++++...
T Consensus 28 ll~G~~G~GKT~ll~~~~~~~~~~~--~~~~~~~~~~~~ 64 (185)
T PF13191_consen 28 LLTGESGSGKTSLLRALLDRLAERG--GYVISINCDDSE 64 (185)
T ss_dssp EE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEEEeccc
Confidence 5667889999999999999999886 459999999883
No 383
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.14 E-value=0.089 Score=45.43 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=30.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
|++..-|+|||+++.-+|+.|..+| ++|++|=.
T Consensus 131 V~atrtg~GKsaVS~~v~r~l~erg--yrv~vVrh 163 (449)
T COG2403 131 VTATRTGVGKSAVSRYVARLLRERG--YRVCVVRH 163 (449)
T ss_pred EEEeccccchhHHHHHHHHHHHHcC--CceEEEec
Confidence 5667779999999999999999999 99999976
No 384
>PLN02796 D-glycerate 3-kinase
Probab=92.98 E-value=0.11 Score=44.86 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+++.-|+||||++..|+..+...| .++..|-+|-.
T Consensus 105 I~G~sGSGKSTLa~~L~~lL~~~g--~~~g~IsiDdf 139 (347)
T PLN02796 105 ISAPQGCGKTTLVFALVYLFNATG--RRAASLSIDDF 139 (347)
T ss_pred EECCCCCcHHHHHHHHHHHhcccC--CceeEEEECCc
Confidence 456789999999999999998877 78888777643
No 385
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.92 E-value=0.13 Score=43.21 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=30.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+-.|+||||+|.+++....+.| .+|++||....-
T Consensus 67 G~~gsGKT~lal~~~~~aq~~g--~~a~fIDtE~~l 100 (279)
T COG0468 67 GPESSGKTTLALQLVANAQKPG--GKAAFIDTEHAL 100 (279)
T ss_pred cCCCcchhhHHHHHHHHhhcCC--CeEEEEeCCCCC
Confidence 4569999999999999999999 899999988643
No 386
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.87 E-value=0.12 Score=41.15 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=27.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+..|+||||+...++..+...| .+|+++-..
T Consensus 22 ~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT 55 (196)
T PF13604_consen 22 VLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPT 55 (196)
T ss_dssp EEEESTTSTHHHHHHHHHHHHHHTT----EEEEESS
T ss_pred EEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCc
Confidence 4557789999999999999999999 999998544
No 387
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=92.84 E-value=0.49 Score=38.49 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=45.3
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
....++++|||... ......... +|.++++++...........++..+...+.+.+-+|+|+.+.
T Consensus 81 ~~~~i~~vDtPg~~-~~~l~~ak~--aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 81 KKRRLTFIECPNDI-NAMIDIAKV--ADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CCceEEEEeCCchH-HHHHHHHHh--cCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 45568999999655 333344454 899999998765544455667788877787755569998663
No 388
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.75 E-value=0.073 Score=44.74 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=27.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+.+-||+||||+|.+++........-..++.|++....
T Consensus 23 ~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 23 AIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp EEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred EEEcCCcCCcceeeeeccccccccccccccccccccccc
Confidence 356779999999999999885432211467778887654
No 389
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.69 E-value=0.14 Score=45.44 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=29.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+++--|+||||++..|...+...| .++..|-.|-.
T Consensus 217 IsG~qGSGKSTLa~~L~~lL~~~g--~~vgvISiDDf 251 (460)
T PLN03046 217 FSAPQGCGKTTLVFALDYLFRVTG--RKSATLSIDDF 251 (460)
T ss_pred EECCCCCCHHHHHHHHHHHhcccC--CceEEEEECCc
Confidence 467779999999999998888778 88998877744
No 390
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.61 E-value=0.1 Score=45.72 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=28.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+|+++.||+|||++...+...+...+ ++|+++-
T Consensus 25 ~fv~G~~GtGKs~l~~~i~~~~~~~~--~~~~~~a 57 (364)
T PF05970_consen 25 FFVTGPAGTGKSFLIKAIIDYLRSRG--KKVLVTA 57 (364)
T ss_pred EEEEcCCCCChhHHHHHHHHHhcccc--ceEEEec
Confidence 37889999999999999999998887 7877654
No 391
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=92.59 E-value=0.64 Score=35.51 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.+.+.++|+|+... ......+.. ++.++++.. .+..++.......+.+.+ .+.+++ ++.|+.+.
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~ 118 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKS--GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADL 118 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence 45778899986432 222333344 788877776 555577777766665543 245544 78898653
No 392
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=92.54 E-value=0.55 Score=38.17 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeC-CCcchHHHHHH-HHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITI-PDTMSLQVAQR-GYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~-~~~~s~~~~~~-~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|.|+++..... ....+.. +|.++++.+ .+..++..+.. +...+... +.+ +-+|.|+.+.
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~--~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL 117 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPD--SDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDM 117 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECccc
Confidence 45788899998643221 1222333 899999998 55567777743 33444432 344 5589999775
No 393
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.45 E-value=0.14 Score=45.68 Aligned_cols=37 Identities=11% Similarity=0.193 Sum_probs=31.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+.-|+|||+++..++..+.+++++.+|+++.++.
T Consensus 140 ~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~ 176 (405)
T TIGR00362 140 FIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEK 176 (405)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHH
Confidence 5678899999999999999999873339999998753
No 394
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.40 E-value=0.11 Score=39.94 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=18.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+..|+||||+|..||..|
T Consensus 8 ~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 8 VLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 567889999999999999887
No 395
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.39 E-value=0.17 Score=39.30 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEI 31 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~V 31 (261)
+..++-|+||||+...+...|.+.| .+|
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~~~--~~v 30 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKKKG--LPV 30 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHHTC--GGE
T ss_pred EEECcCCCCHHHHHHHHHHHhhccC--Ccc
Confidence 5678899999999999999998766 554
No 396
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=92.36 E-value=0.18 Score=40.57 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
=-|+||||.+..|+..|..+| .+|++.=
T Consensus 11 iDGaGKTT~~~~L~~~l~~~g--~~v~~tr 38 (208)
T COG0125 11 IDGAGKTTQAELLKERLEERG--IKVVLTR 38 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEEe
Confidence 359999999999999999999 8887753
No 397
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.34 E-value=0.13 Score=47.72 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=31.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~ 39 (261)
++.+--|+||||++..||..|.. .| .++.++|.|.-
T Consensus 396 vl~Gl~GSGKSTia~~La~~L~~~~g--~~~~~lD~D~v 432 (568)
T PRK05537 396 FFTGLSGAGKSTIAKALMVKLMEMRG--RPVTLLDGDVV 432 (568)
T ss_pred EEECCCCChHHHHHHHHHHHhhhccC--ceEEEeCCcHH
Confidence 45677899999999999999987 66 88999999855
No 398
>PRK03003 GTP-binding protein Der; Reviewed
Probab=92.33 E-value=0.74 Score=41.91 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCC-------ChhH------HHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEcCC
Q psy14655 105 GPCDILFIDTPPGT-------GDTH------LSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMNMN 170 (261)
Q Consensus 105 ~~yd~IiiD~~~~~-------~~~~------~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N~~ 170 (261)
.+..+.|+|||+.. +... ...+.. ||.+++|++.+.. +.... ..+..+...+.+ +-+|+|+.
T Consensus 257 ~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~--ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~p-iIiV~NK~ 332 (472)
T PRK03003 257 GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEA--AEVAVVLIDASEPISEQDQ-RVLSMVIEAGRA-LVLAFNKW 332 (472)
T ss_pred CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhc--CCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-EEEEEECc
Confidence 34567788998521 0111 112334 8999999986553 33333 456666666666 55899997
Q ss_pred CC
Q psy14655 171 SV 172 (261)
Q Consensus 171 ~~ 172 (261)
+.
T Consensus 333 Dl 334 (472)
T PRK03003 333 DL 334 (472)
T ss_pred cc
Confidence 64
No 399
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=92.29 E-value=0.53 Score=34.28 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=37.3
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcc-hHHHHHHH----HHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTM-SLQVAQRG----YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~----~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+++.++|+|+..... ....... +|.+++++..+.. +....... .......+.+ +-+++|+.+.
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~ 114 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRG--ADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDL 114 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEecccc
Confidence 46789999998643222 2233344 8999999886654 33333332 1122223444 5688898654
No 400
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.26 E-value=0.89 Score=38.46 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.-|+||||+...+...|... .++.+|+-|...
T Consensus 111 G~pGsGKTTLl~~l~~~l~~~---~~~~VI~gD~~t 143 (290)
T PRK10463 111 SSPGSGKTTLLTETLMRLKDS---VPCAVIEGDQQT 143 (290)
T ss_pred CCCCCCHHHHHHHHHHHhccC---CCEEEECCCcCc
Confidence 557999999999999988654 588888888653
No 401
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=92.23 E-value=0.14 Score=48.43 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=33.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++.+..|+||||+|..|+..|...| ..+.++|-|.-..
T Consensus 464 ~~~G~~gsGKst~a~~l~~~l~~~~--~~~~~l~~D~~r~ 501 (632)
T PRK05506 464 WFTGLSGSGKSTIANLVERRLHALG--RHTYLLDGDNVRH 501 (632)
T ss_pred EecCCCCchHHHHHHHHHHHHHHcC--CCEEEEcChhhhh
Confidence 4677889999999999999998888 8999999997653
No 402
>PLN00023 GTP-binding protein; Provisional
Probab=92.23 E-value=2.4 Score=36.55 Aligned_cols=66 Identities=8% Similarity=-0.063 Sum_probs=44.1
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhCC--------------CCeEEEEE
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKLN--------------IPVAGLVM 167 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~~--------------~~~~giv~ 167 (261)
..+.+-|.|+++.-.. .....+.. +|.+|+|.+ .+..+...+...++.+.... --.+.+|.
T Consensus 81 k~v~LqIWDTAGqErfrsL~~~yyr~--AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVG 158 (334)
T PLN00023 81 RDFFVELWDVSGHERYKDCRSLFYSQ--INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIG 158 (334)
T ss_pred ceEEEEEEECCCChhhhhhhHHhccC--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEE
Confidence 4577889999864322 22233444 899999987 55677778888777776431 12466899
Q ss_pred cCCCC
Q psy14655 168 NMNSV 172 (261)
Q Consensus 168 N~~~~ 172 (261)
|+++.
T Consensus 159 NK~DL 163 (334)
T PLN00023 159 NKADI 163 (334)
T ss_pred ECccc
Confidence 99875
No 403
>KOG3062|consensus
Probab=92.22 E-value=0.78 Score=37.14 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+|+++---+||||.|.+|..+|+..|.++.|.++|
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 35677778999999999999999998223566665
No 404
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.20 E-value=0.14 Score=41.20 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=24.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH--------HhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAM--------KICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l--------a~~g~~~~VllvD~ 36 (261)
++.+--|+||||+.+.++..+ ...+ .++|++--
T Consensus 21 ~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~--~~il~~~~ 61 (236)
T PF13086_consen 21 LIQGPPGTGKTTTLASIIAQLLQRFKSRSADRG--KKILVVSP 61 (236)
T ss_dssp EEE-STTSSHHHHHHHHHHHH-------HCCCS--S-EEEEES
T ss_pred EEECCCCCChHHHHHHHHHHhccchhhhhhhcc--ccceeecC
Confidence 456777999999999999998 4555 88888753
No 405
>PLN02924 thymidylate kinase
Probab=92.18 E-value=0.15 Score=41.40 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=25.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
=+--|+||||.+..|+..|...| .+|.++.
T Consensus 22 EGiDGsGKsTq~~~L~~~l~~~g--~~v~~~~ 51 (220)
T PLN02924 22 EGLDRSGKSTQCAKLVSFLKGLG--VAAELWR 51 (220)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcC--CCceeee
Confidence 35569999999999999999999 8886654
No 406
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=92.07 E-value=0.21 Score=36.20 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=26.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
++.+.-|+|||+++..++..+...++..+++++
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 456778999999999999999975334677777
No 407
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.06 E-value=0.16 Score=37.68 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=30.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMN 48 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~ 48 (261)
.-+.-|+|||+++..+|..+ + .++..+-+.... +...++|
T Consensus 4 L~G~~G~GKt~l~~~la~~~---~--~~~~~i~~~~~~-~~~dl~g 43 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALL---G--RPVIRINCSSDT-TEEDLIG 43 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHH---T--CEEEEEE-TTTS-THHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHh---h--cceEEEEecccc-cccccee
Confidence 44567999999999999999 6 899999888775 3445544
No 408
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.05 E-value=0.16 Score=43.24 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=28.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++..|+||||+...|...+....++.+++.|+
T Consensus 136 lI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 136 LVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred EEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 5788999999999999999888752238898887
No 409
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=92.02 E-value=0.45 Score=38.49 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcc-------hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTM-------SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~-------s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.++|+|+.... .....+.. +|.+++|+..... ....+...+......+.+.+-+++|+.+.
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~--~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQ--ADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhh--CCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 6789999999964321 12233333 8999999986653 12234444555555665556689999764
No 410
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=91.97 E-value=0.24 Score=45.20 Aligned_cols=45 Identities=31% Similarity=0.225 Sum_probs=35.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD 51 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~ 51 (261)
+.-..-|.||||++..|+..|.+.| +++.+.= ..||+.-.||+..
T Consensus 71 itPTP~GEGKtTttIGL~~aL~~lg--k~~~~~l---RePSlGP~FGiKG 115 (587)
T PRK13507 71 ITPTPLGEGKSTTTMGLVQGLGKRG--KKVSGAI---RQPSGGPTMNIKG 115 (587)
T ss_pred cCCCCCCCCccchhhhHHHHHHhhc--CceEEEE---ecCCcCCcCCccc
Confidence 3445679999999999999999999 8887653 4456666677764
No 411
>PRK13946 shikimate kinase; Provisional
Probab=91.90 E-value=0.14 Score=40.26 Aligned_cols=30 Identities=40% Similarity=0.393 Sum_probs=23.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+-.|+||||++..||..| | .+ ++|.|.
T Consensus 14 ~l~G~~GsGKsti~~~LA~~L---g--~~--~id~D~ 43 (184)
T PRK13946 14 VLVGLMGAGKSTVGRRLATML---G--LP--FLDADT 43 (184)
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--CC--eECcCH
Confidence 456778999999999999888 5 55 577773
No 412
>PLN02759 Formate--tetrahydrofolate ligase
Probab=91.86 E-value=0.32 Score=44.74 Aligned_cols=46 Identities=28% Similarity=0.277 Sum_probs=35.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCcccccCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGPSIPILMNLPDT 52 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~~~~~~~~~~~~ 52 (261)
+.-..-|.||||++..|+..|.+ .| +++++. ...||+.-.||+.+-
T Consensus 77 itPTP~GEGKTTttIGL~~aL~~~lg--k~~~~~---lRePSlGP~FGiKGG 123 (637)
T PLN02759 77 ITPTPLGEGKSTTTIGLCQALGAYLD--KKVVTC---LRQPSQGPTFGIKGG 123 (637)
T ss_pred cCCCCCCCCchhHHHHHHHHHHHHhC--CeeEEE---eecCCcCCcCCcccc
Confidence 34456799999999999999997 89 888775 344566666887643
No 413
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.86 E-value=0.17 Score=40.34 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=28.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCC--CCeEEEEecCCCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYP--DKEIGILDADVFGPSIPIL 46 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~--~~~VllvD~D~~~~~~~~~ 46 (261)
++.+..|+|||++..+++..++.... +.++.++|.. +..+..+
T Consensus 42 li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k--~~~l~~~ 86 (205)
T PF01580_consen 42 LIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK--GSDLAPL 86 (205)
T ss_dssp EEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT--SSCCGGG
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC--ccccchh
Confidence 46778899999999999999998311 2667777765 3344444
No 414
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.75 E-value=0.19 Score=45.41 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=31.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+.-|+|||+++..+|..+.+++++.+|+++.++-
T Consensus 152 ~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 152 FIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 5678899999999999999999884349999998864
No 415
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.72 E-value=0.19 Score=41.90 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=30.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMN 48 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~ 48 (261)
..+--|+|||++|..+|..+ | .++..+.++... ....++|
T Consensus 26 L~G~~GtGKT~lA~~la~~l---g--~~~~~i~~~~~~-~~~dllg 65 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVARKR---D--RPVMLINGDAEL-TTSDLVG 65 (262)
T ss_pred EEcCCCCCHHHHHHHHHHHh---C--CCEEEEeCCccC-CHHHHhh
Confidence 34667999999999999744 7 899999998754 3334444
No 416
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.72 E-value=0.21 Score=45.56 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=30.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~ 39 (261)
+.+--|+||||+|.+++..-+++ | .++++|.++..
T Consensus 26 i~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~ 61 (484)
T TIGR02655 26 VSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEES 61 (484)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecC
Confidence 45677999999999999887776 8 99999999854
No 417
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=91.68 E-value=0.45 Score=43.35 Aligned_cols=66 Identities=17% Similarity=0.101 Sum_probs=43.4
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.++|+|||+.... .....+.. +|.+++|++....-..........+...+.+.+-+++|+.+.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~--aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGAST--CDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhh--CCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 5678999999974321 12233343 899999998765544444455555666666656689999764
No 418
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=91.68 E-value=0.36 Score=43.06 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=46.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.|+|||+... ......+.. +|.+++|+.....-.....+.+..+...+.+.+-+++|+.+.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~--aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGAST--ADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhh--CCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 567899999996432 223334444 999999999776655556666666777677666689999764
No 419
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=91.58 E-value=0.18 Score=45.47 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=30.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+.-|+|||+++..+|..+.+.| .+|+++..+.
T Consensus 145 ~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~~~ 179 (445)
T PRK12422 145 YLFGPEGSGKTHLMQAAVHALRESG--GKILYVRSEL 179 (445)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeHHH
Confidence 3456779999999999999999888 9999998763
No 420
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=91.49 E-value=0.56 Score=37.40 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+.+.|+|||+... ......+.. +|.+++|++.+.. ........+..+...+.+.+-+|+|+.+.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~--~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAV--MDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhc--CCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 6789999996432 112222333 7999999987652 22233445555555565556689999664
No 421
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=91.40 E-value=1.1 Score=34.21 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=39.8
Q ss_pred CCCCEEEEeCCCCCC--------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+..+.++|+|+..+ ......+.....|.++.|++++.. +.-..+...+.+.+.|.+ +++||++
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~v-vvlN~~D 116 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVV-VVLNKMD 116 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEE-EEEETHH
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEE-EEEeCHH
Confidence 568999999997432 112233322338999999997663 344456677778888844 8999954
No 422
>PRK06547 hypothetical protein; Provisional
Probab=91.40 E-value=0.16 Score=39.49 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
.+.+..|+||||+|..||..+
T Consensus 19 ~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 19 LIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999988763
No 423
>PRK07773 replicative DNA helicase; Validated
Probab=91.40 E-value=0.22 Score=48.98 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=33.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~ 41 (261)
++++.-|+|||+++.|+|...|.+ | .+|+++-+++...
T Consensus 221 vIagrPg~GKT~fal~ia~~~a~~~~--~~V~~fSlEms~~ 259 (886)
T PRK07773 221 IVAARPSMGKTTFGLDFARNCAIRHR--LAVAIFSLEMSKE 259 (886)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCCCHH
Confidence 567889999999999999999865 6 9999999998753
No 424
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=91.35 E-value=0.11 Score=41.48 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
|+.+-.|+||||++..+...+. + ...+.||.|.-.
T Consensus 19 i~aG~~GsGKSt~~~~~~~~~~--~--~~~v~i~~D~~r 53 (199)
T PF06414_consen 19 IIAGQPGSGKSTLARQLLEEFG--G--GGIVVIDADEFR 53 (199)
T ss_dssp EEES-TTSTTHHHHHHHHHHT---T--T-SEEE-GGGGG
T ss_pred EEeCCCCCCHHHHHHHhhhhcc--C--CCeEEEehHHHH
Confidence 5678899999999998877776 5 688999999754
No 425
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.32 E-value=0.24 Score=39.88 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=26.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+++-+|+||||+|..|...|.. .++.+|-.|---
T Consensus 13 IaG~SgSGKTTva~~l~~~~~~----~~~~~I~~D~YY 46 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLGV----EKVVVISLDDYY 46 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHhCc----CcceEeeccccc
Confidence 4567899999999999998843 477777777543
No 426
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.31 E-value=0.33 Score=42.87 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=32.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++..++..+...+++..++.|+|....
T Consensus 59 lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 59 LIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 567899999999999999999876434788888887553
No 427
>PRK06851 hypothetical protein; Provisional
Probab=91.29 E-value=0.42 Score=41.84 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=33.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
++.+.-|+||||+...++..+.++| .+|.+.=|-....++
T Consensus 218 ~i~G~pG~GKstl~~~i~~~a~~~G--~~v~~~hC~~dPdsl 257 (367)
T PRK06851 218 FLKGRPGTGKSTMLKKIAKAAEERG--FDVEVYHCGFDPDSL 257 (367)
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCCc
Confidence 4567779999999999999999999 999998776554444
No 428
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.27 E-value=0.4 Score=42.13 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=30.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+.-|+||||+...|...|.++| ++|.+|--|...
T Consensus 211 ~g~~~~GKtt~~~~l~~~l~~~g--~~v~~iKh~~h~ 245 (366)
T PRK14489 211 VGYSGTGKTTLLEKLIPELIARG--YRIGLIKHSHHR 245 (366)
T ss_pred ecCCCCCHHHHHHHHHHHHHHcC--CEEEEEEECCcc
Confidence 35679999999999999999999 999999877653
No 429
>PRK06761 hypothetical protein; Provisional
Probab=91.24 E-value=0.25 Score=41.67 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=28.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEE-EecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGI-LDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vll-vD~D~ 38 (261)
++.+-.|+||||++..++..|...| .++-. .+.|+
T Consensus 7 vI~G~~GsGKTTla~~L~~~L~~~g--~~v~~~~~~~~ 42 (282)
T PRK06761 7 IIEGLPGFGKSTTAKMLNDILSQNG--IEVELYLEGNL 42 (282)
T ss_pred EEECCCCCCHHHHHHHHHHhcCcCc--eEEEEEecCCC
Confidence 4667789999999999999998888 88764 56554
No 430
>KOG0461|consensus
Probab=91.24 E-value=1.7 Score=37.55 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=32.3
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcC-CCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLF-IDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~-ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+...+-++|||+..+ ..+..+..+. -|..++|++....---++...+ .+-..-.+...+|+|+...
T Consensus 68 e~lq~tlvDCPGHas-LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL-iig~~~c~klvvvinkid~ 134 (522)
T KOG0461|consen 68 EQLQFTLVDCPGHAS-LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL-IIGELLCKKLVVVINKIDV 134 (522)
T ss_pred ccceeEEEeCCCcHH-HHHHHHhhhheeeeeeEEEehhcccccccchhh-hhhhhhccceEEEEecccc
Confidence 556889999986443 3333333211 5777777764332211111111 1111223446678887543
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=91.19 E-value=0.93 Score=36.34 Aligned_cols=65 Identities=22% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.+.|+++.... ........ ++.++++.+ .+..++..+...+..+... +.+ +.++.|+.+.
T Consensus 56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl 125 (215)
T PTZ00132 56 GPICFNVWDTAGQEKFGGLRDGYYIK--GQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDV 125 (215)
T ss_pred eEEEEEEEECCCchhhhhhhHHHhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccC
Confidence 4467778888753221 11222333 778888877 4556666666666655432 333 4577898654
No 432
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.11 E-value=0.19 Score=40.30 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
.+.+..|+||||++..|+..+.. ..+.++..|.
T Consensus 10 ~I~G~sGsGKSTl~~~l~~~l~~----~~~~~i~~D~ 42 (207)
T TIGR00235 10 GIGGGSGSGKTTVARKIYEQLGK----LEIVIISQDN 42 (207)
T ss_pred EEECCCCCCHHHHHHHHHHHhcc----cCCeEecccc
Confidence 35678999999999999987753 2445555544
No 433
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.06 E-value=0.14 Score=40.80 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=24.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++++..|+||||+|..||..+ | ..+ ++.-|.-
T Consensus 7 ~i~G~~G~GKst~a~~l~~~~---~--~~~-~~~~D~~ 38 (197)
T PRK12339 7 FIGGIPGVGKTSISGYIARHR---A--IDI-VLSGDYL 38 (197)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CeE-EehhHHH
Confidence 578899999999999998875 5 543 5666643
No 434
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.02 E-value=0.24 Score=41.86 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=27.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCC--CCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYP--DKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~--~~~VllvD~D 37 (261)
+..+.-|+||||+|..+|..+.+.|. ..+++.++++
T Consensus 62 ll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 62 SFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 34567899999999999999998761 1246666653
No 435
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=91.01 E-value=0.23 Score=44.25 Aligned_cols=30 Identities=27% Similarity=0.184 Sum_probs=25.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGI 33 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vll 33 (261)
++++--|.||||.|+.||.+++.+| +=|=-
T Consensus 267 LIAG~PGaGKsTFaqAlAefy~~~G--kiVKT 296 (604)
T COG1855 267 LIAGAPGAGKSTFAQALAEFYASQG--KIVKT 296 (604)
T ss_pred EEecCCCCChhHHHHHHHHHHHhcC--cEEee
Confidence 4677889999999999999999999 64433
No 436
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=90.95 E-value=0.21 Score=42.77 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
-||.|||-++..||..|.++| .++.++--.+-+
T Consensus 57 vGGtGKTP~vi~la~~l~~rG--~~~gvvSRGYgg 89 (336)
T COG1663 57 VGGTGKTPVVIWLAEALQARG--VRVGVVSRGYGG 89 (336)
T ss_pred ECCCCcCHHHHHHHHHHHhcC--CeeEEEecCcCC
Confidence 499999999999999999999 999999988876
No 437
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.94 E-value=0.17 Score=38.71 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+-.|+||||++..|+..+ | ..+||.|.-
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l---~----~~~v~~D~~ 32 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL---G----AKFIEGDDL 32 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc---C----CeEEeCccc
Confidence 567888999999999999776 3 245677654
No 438
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.92 E-value=0.2 Score=41.93 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=28.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++..|+||||+...+...+-... .+++.|+
T Consensus 131 li~G~tGSGKTT~l~all~~i~~~~--~~iv~iE 162 (270)
T PF00437_consen 131 LISGPTGSGKTTLLNALLEEIPPED--ERIVTIE 162 (270)
T ss_dssp EEEESTTSSHHHHHHHHHHHCHTTT--SEEEEEE
T ss_pred EEECCCccccchHHHHHhhhccccc--cceEEec
Confidence 5788899999999999998888876 8999998
No 439
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=90.86 E-value=0.11 Score=47.21 Aligned_cols=46 Identities=28% Similarity=0.336 Sum_probs=29.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT 52 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~ 52 (261)
+.-..-|.||||++..|+..|++.| +++.+. ...||+.-.||+.+-
T Consensus 62 itPTp~GEGKtTttiGL~~al~~lg--~~~~~~---lRePSlGP~fG~KGG 107 (557)
T PF01268_consen 62 ITPTPAGEGKTTTTIGLAQALNRLG--KKAIAA---LREPSLGPVFGIKGG 107 (557)
T ss_dssp SS--TTS-SHHHHHHHHHHHHHHTT----EEEE---E----CHHHHCST-S
T ss_pred cCCCCCCCCceeHHHHHHHHHHhcC--CceEEE---EecCCCCCccCcccc
Confidence 3445679999999999999999999 887765 455677777888753
No 440
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=90.81 E-value=0.15 Score=41.90 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=19.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~ 24 (261)
+.++-.||||||+|..+|..|.-
T Consensus 93 LIGGasGVGkStIA~ElA~rLgI 115 (299)
T COG2074 93 LIGGASGVGKSTIAGELARRLGI 115 (299)
T ss_pred EecCCCCCChhHHHHHHHHHcCC
Confidence 46788899999999999988843
No 441
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=90.79 E-value=5.4 Score=32.86 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
.|.||-.+|+.++..|..+| .+|-++-+||--+
T Consensus 11 s~lgkgi~~as~g~ll~~~g--~~v~~~K~DpYlN 43 (255)
T cd03113 11 SSLGKGITAASLGRLLKARG--LKVTAQKLDPYLN 43 (255)
T ss_pred cCcchHHHHHHHHHHHHHCC--CeEEEEeeccccc
Confidence 47899999999999999999 9999999999653
No 442
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=90.75 E-value=0.31 Score=44.04 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=30.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+.-|+|||+++..++..+.+..++.+|+++.++.
T Consensus 145 ~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 145 FIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4668889999999999999888643349999988753
No 443
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=90.71 E-value=0.84 Score=42.79 Aligned_cols=65 Identities=18% Similarity=0.079 Sum_probs=35.7
Q ss_pred CCCCEEEEeCCCCCChh--------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.++|+|+..+.. ....+....+|.++.|++.+... ........+.+.+.+ +-++.||.+.
T Consensus 39 ~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~P-iIIVlNK~Dl 111 (591)
T TIGR00437 39 QGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIP-MILALNLVDE 111 (591)
T ss_pred CCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCC-EEEEEehhHH
Confidence 34567888998643311 11111211278888888865532 222333344455666 4488999764
No 444
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=90.71 E-value=2.4 Score=33.47 Aligned_cols=67 Identities=7% Similarity=0.062 Sum_probs=33.8
Q ss_pred CCCCEEEEeCCCCCChh------HHHHh---h--hcCCCeEEEEeCCCcchHHHHHHHHHHHHhC-C---CCeEEEEEcC
Q psy14655 105 GPCDILFIDTPPGTGDT------HLSLI---Q--NLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-N---IPVAGLVMNM 169 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~------~~~~~---~--~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~---~~~~giv~N~ 169 (261)
.+..++|||||+..+.. ..... . ....|.+++|+..+..+- .-..+++.+.+. + .+...+|+++
T Consensus 47 ~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~ 125 (196)
T cd01852 47 DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTE-EEEQAVETLQELFGEKVLDHTIVLFTR 125 (196)
T ss_pred CCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCH-HHHHHHHHHHHHhChHhHhcEEEEEEC
Confidence 45578889998643211 00110 0 011577788877555433 233445555442 2 2345577777
Q ss_pred CCC
Q psy14655 170 NSV 172 (261)
Q Consensus 170 ~~~ 172 (261)
.+.
T Consensus 126 ~d~ 128 (196)
T cd01852 126 GDD 128 (196)
T ss_pred ccc
Confidence 553
No 445
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=90.69 E-value=1.4 Score=33.84 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=39.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+... ......+.. +|.+++|++.+.. +...... ...+...+.+ +.+|.|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--ad~~i~v~D~~~~~~~~~~~~-~~~~~~~~~~-iiiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAA--CEGALLLVDATQGVEAQTLAN-FYLALENNLE-IIPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHh--cCeEEEEEECCCCccHhhHHH-HHHHHHcCCC-EEEEEECCCC
Confidence 567889999996433 223334444 9999999986553 3333322 2333345666 5589999664
No 446
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.60 E-value=0.12 Score=38.51 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+||||++..++..+. ..+|+.|.-
T Consensus 3 i~~G~pgsGKSt~a~~l~~~~~-------~~~i~~D~~ 33 (143)
T PF13671_consen 3 ILCGPPGSGKSTLAKRLAKRLG-------AVVISQDEI 33 (143)
T ss_dssp EEEESTTSSHHHHHHHHHHHST-------EEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHCC-------CEEEeHHHH
Confidence 5678889999999988875542 567888863
No 447
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.59 E-value=0.31 Score=38.66 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=26.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++-+--|+||||++..|+..|...| ..|....
T Consensus 7 ~ieG~~gsGKsT~~~~L~~~l~~~~--~~~~~~~ 38 (205)
T PRK00698 7 TIEGIDGAGKSTQIELLKELLEQQG--RDVVFTR 38 (205)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CceeEee
Confidence 3456779999999999999998888 7766543
No 448
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=90.59 E-value=0.16 Score=38.20 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=24.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++++.-|+||||+|..|+..+ + . .++|.|.-.
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~---~--~--~~i~~D~~~ 34 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL---G--A--PFIDGDDLH 34 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc---C--C--EEEeCcccc
Confidence 567889999999999998764 3 3 456777654
No 449
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=90.57 E-value=0.66 Score=42.05 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=44.9
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
...+.|+|+|+... ..+...+.. +|.+++|+.++.. ...++.+.+..+...+.+.+-+++|+++.
T Consensus 116 ~~~i~~IDtPGH~~fi~~m~~g~~~--~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 116 KRHVSFVDCPGHDILMATMLNGAAV--MDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred cceEeeeeCCCHHHHHHHHHHHHhh--CCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccc
Confidence 45789999997432 122333333 8999999998764 34455566677777788777789999764
No 450
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=90.34 E-value=0.42 Score=42.65 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++++.-|.|||++|.|+|..+|... +++|+++-+.+..
T Consensus 200 i~AaRP~mGKTafalnia~n~a~~~-~~~v~iFSLEM~~ 237 (435)
T COG0305 200 IVAARPGMGKTALALNIALNAAADG-RKPVAIFSLEMSE 237 (435)
T ss_pred EEccCCCCChHHHHHHHHHHHHHhc-CCCeEEEEccCCH
Confidence 5678899999999999999999865 4779999888764
No 451
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=90.30 E-value=0.89 Score=40.76 Aligned_cols=66 Identities=12% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDT--MSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.|+|||+.... .....+.. +|.+++|++.+. .-.......+..+...+.+.+-+++|+.+.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~--aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQ--ADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhc--CCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 6789999999974322 12223333 899999998765 323344455556666676657789999764
No 452
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=90.25 E-value=0.18 Score=44.62 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD 51 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~ 51 (261)
.--|.||||++..|+.+|.+.| +++.+-= ..||+.-.||+..
T Consensus 63 TPaGEGKsTttiGL~~al~~lg--K~~i~al---RePSlGP~fGiKG 104 (554)
T COG2759 63 TPAGEGKTTTTIGLVDALNKLG--KKAIIAL---REPSLGPVFGIKG 104 (554)
T ss_pred CCCCCCcceeeehHHHHHHhcC--chheEEe---ccCCcCCcccccc
Confidence 4469999999999999999999 8876643 3456666677764
No 453
>PRK13695 putative NTPase; Provisional
Probab=90.20 E-value=0.42 Score=37.05 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIG 32 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vl 32 (261)
++.+..|+||||+...++..+...| .++.
T Consensus 4 ~ltG~~G~GKTTll~~i~~~l~~~G--~~~~ 32 (174)
T PRK13695 4 GITGPPGVGKTTLVLKIAELLKEEG--YKVG 32 (174)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEE
Confidence 3457789999999999999888777 7764
No 454
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.17 E-value=0.24 Score=36.87 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.1
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++++.-|+||||+|..||..+
T Consensus 3 ~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 467889999999999998765
No 455
>PRK13764 ATPase; Provisional
Probab=90.14 E-value=0.33 Score=45.30 Aligned_cols=32 Identities=25% Similarity=0.225 Sum_probs=28.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++.-|+||||++..|+..+...+ +.|+.++
T Consensus 261 LIsG~TGSGKTTll~AL~~~i~~~~--riV~TiE 292 (602)
T PRK13764 261 LIAGAPGAGKSTFAQALAEFYADMG--KIVKTME 292 (602)
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCC--CEEEEEC
Confidence 5678889999999999999999887 8887776
No 456
>PRK12338 hypothetical protein; Provisional
Probab=90.01 E-value=0.18 Score=43.14 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=24.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++++..|+||||+|..||..+ | .+. +++-|.-.
T Consensus 8 ~i~G~sGsGKST~a~~la~~l---~--~~~-~~~tD~~r 40 (319)
T PRK12338 8 LIGSASGIGKSTIASELARTL---N--IKH-LIETDFIR 40 (319)
T ss_pred EEECCCCCCHHHHHHHHHHHC---C--CeE-EccChHHH
Confidence 467889999999999999876 4 443 44555543
No 457
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=90.01 E-value=0.2 Score=38.48 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHHH
Q psy14655 7 GGVGKSTTTVNLATAMK 23 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la 23 (261)
=|+||||++..|+..+-
T Consensus 8 iGCGKTTva~aL~~LFg 24 (168)
T PF08303_consen 8 IGCGKTTVALALSNLFG 24 (168)
T ss_pred CCcCHHHHHHHHHHHcC
Confidence 39999999998887774
No 458
>KOG0462|consensus
Probab=89.99 E-value=1.1 Score=41.04 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=49.0
Q ss_pred CCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
|-+=+||||+.. +..+...+.+ ||.+++++.....-..++....-..-+.++.++ .|+|+.+.
T Consensus 125 ylLNLIDTPGHvDFs~EVsRslaa--c~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iI-pVlNKIDl 189 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGEVSRSLAA--CDGALLVVDASQGVQAQTVANFYLAFEAGLAII-PVLNKIDL 189 (650)
T ss_pred eEEEeecCCCcccccceehehhhh--cCceEEEEEcCcCchHHHHHHHHHHHHcCCeEE-EeeeccCC
Confidence 778899999875 3444555555 999999999999888888777776666777744 88999765
No 459
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=89.89 E-value=0.49 Score=44.36 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.-|+||||+...|...|.++| +||.+|-.|..
T Consensus 17 G~s~sGKTTlie~li~~L~~~G--~rVavIKh~~h 49 (597)
T PRK14491 17 AYSGTGKTTLLEQLIPELNQRG--LRLAVIKHAHH 49 (597)
T ss_pred cCCCCCHHHHHHHHHHHHHhCC--ceEEEEEcCCc
Confidence 3469999999999999999999 99999998654
No 460
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=89.79 E-value=0.9 Score=36.32 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCc-chH-HHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDT-MSL-QVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~-~s~-~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+++.++|+++..... ....... ++.++++..... .+. .......+.+.... .-.+-++.|+.+.
T Consensus 53 ~~~~~~~Dt~gq~~~~~~~~~y~~~--~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 53 NIKLQLWDTAGQEEYRSLRPEYYRG--ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred EEEEEeecCCCHHHHHHHHHHHhcC--CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 4678888997543321 2222233 788888887553 444 44444555665543 2346688898664
No 461
>PRK13976 thymidylate kinase; Provisional
Probab=89.78 E-value=0.4 Score=38.58 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=22.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEE
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC-YPDKEIGIL 34 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~-g~~~~Vllv 34 (261)
-+=-|+||||.+..|+..|... | ..+|.+.
T Consensus 6 EGiDGsGKsTq~~~L~~~L~~~~g-~~~v~~~ 36 (209)
T PRK13976 6 EGIDGSGKTTQSRLLAEYLSDIYG-ENNVVLT 36 (209)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcC-CcceEEe
Confidence 3456999999999999999986 4 1356543
No 462
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=89.75 E-value=0.4 Score=46.68 Aligned_cols=36 Identities=22% Similarity=0.098 Sum_probs=31.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++-++.|+||||+...++..+.+.| .+|+++|.+..
T Consensus 442 ~I~G~sGsGKS~l~~~l~~~~~~~g--~~vviiD~g~s 477 (829)
T TIGR03783 442 FILGPSGSGKSFFTNHLVRQYYEQG--THILLVDTGNS 477 (829)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--CEEEEECCCcc
Confidence 5668899999999999999999999 99999998743
No 463
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.73 E-value=0.32 Score=41.27 Aligned_cols=33 Identities=24% Similarity=0.386 Sum_probs=25.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++++-.|+||||+|..||..| | .++ +|-.|.-.
T Consensus 96 lI~G~sgsGKStlA~~La~~l---~--~~~-vi~~D~~r 128 (301)
T PRK04220 96 LIGGASGVGTSTIAFELASRL---G--IRS-VIGTDSIR 128 (301)
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CCE-EEechHHH
Confidence 467888999999999999888 4 443 45566654
No 464
>PLN02348 phosphoribulokinase
Probab=89.70 E-value=0.45 Score=41.93 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=27.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCC-------------CCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYP-------------DKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~-------------~~~VllvD~D~~ 39 (261)
+++-.|+||||+|..|+..|...+. +..+.+|-+|-.
T Consensus 54 IaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 54 LAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred EECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 4577899999999999999975420 135777777744
No 465
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=89.69 E-value=0.29 Score=41.17 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=23.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+.+-.|+||||++..|+..+...+ ..|+..|
T Consensus 4 I~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~D 34 (273)
T cd02026 4 VAGDSGCGKSTFLRRLTSLFGSDL--VTVICLD 34 (273)
T ss_pred EECCCCCCHHHHHHHHHHhhCCCc--eEEEECc
Confidence 457789999999999998886555 4555544
No 466
>CHL00181 cbbX CbbX; Provisional
Probab=89.56 E-value=0.36 Score=40.91 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=26.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCC--CCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYP--DKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~--~~~VllvD~D 37 (261)
+..+.-|+||||+|..+|..+...|. ..+++.++.+
T Consensus 63 ll~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 63 SFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45677899999999999999987661 1236666643
No 467
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=89.52 E-value=0.48 Score=43.56 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=34.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCCCcccccCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGPSIPILMNLPDT 52 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~~~~~~~~~~~~ 52 (261)
+.-..-|.||||++..|+..|. +.| +++.+.= ..||+.-.||+.+-
T Consensus 76 itPTP~GEGKtTttIGL~~aL~~~lg--k~~~~~l---RePSlGP~FGiKGG 122 (625)
T PTZ00386 76 MNPTPLGEGKSTTTIGLAQSLGAHLH--RKTFACI---RQPSQGPTFGIKGG 122 (625)
T ss_pred cCCCCCCCCccchhhhhHHHHHHHhC--cceEEEE---ecCCcCCcCCcccc
Confidence 3445679999999999999999 789 8877653 44555556887653
No 468
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=89.49 E-value=1.8 Score=33.96 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhh-cCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQN-LFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~-~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+. .......... ..+|.+++|+......-......+......+.+ +-+++|+.+.
T Consensus 66 ~~~~~~i~DtpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 5789999999964 2222222221 117899999986653222222333334444665 4489999663
No 469
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=89.36 E-value=0.74 Score=35.15 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCCC------hhHHHHhhhcCCCeEEEEeCCCcchH-HHHHHHHHHHHhCCCCeEEEEEcC
Q psy14655 106 PCDILFIDTPPGTG------DTHLSLIQNLFIDTAIIITIPDTMSL-QVAQRGYTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 106 ~yd~IiiD~~~~~~------~~~~~~~~~~~ad~viiv~~~~~~s~-~~~~~~~~~l~~~~~~~~giv~N~ 169 (261)
..+++|+|+|+..+ ......+.. +|.+++|+.++.... .....+.+...... ....+|+|+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~--~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~-~~~i~V~nk 167 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPK--ADVVIFVVDANQDLTESDMEFLKQMLDPDK-SRTIFVLNK 167 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHST--TEEEEEEEETTSTGGGHHHHHHHHHHTTTC-SSEEEEEE-
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhcc--CCEEEEEeccCcccchHHHHHHHHHhcCCC-CeEEEEEcC
Confidence 46799999985422 223344444 999999998777444 44444444444433 346677775
No 470
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.36 E-value=0.44 Score=44.49 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
|+.+.-|+|||.++..+|..+.+..++++|+++.++-
T Consensus 318 ~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 318 FIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5678889999999999999998642239999999864
No 471
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=89.34 E-value=0.14 Score=37.76 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=14.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhcC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g 26 (261)
+--|+||||++..||..+...-
T Consensus 6 g~PG~GKT~la~~lA~~~~~~f 27 (131)
T PF07726_consen 6 GVPGVGKTTLAKALARSLGLSF 27 (131)
T ss_dssp S---HHHHHHHHHHHHHTT--E
T ss_pred CCCccHHHHHHHHHHHHcCCce
Confidence 3459999999999998876544
No 472
>PRK13948 shikimate kinase; Provisional
Probab=89.32 E-value=0.36 Score=37.93 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=22.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+--|+||||++..||..| | .+ +||+|.
T Consensus 14 ~LiG~~GsGKSTvg~~La~~l---g--~~--~iD~D~ 43 (182)
T PRK13948 14 ALAGFMGTGKSRIGWELSRAL---M--LH--FIDTDR 43 (182)
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--CC--EEECCH
Confidence 345667999999999998776 4 44 459994
No 473
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=89.32 E-value=0.5 Score=36.73 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=30.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFGP 41 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~~ 41 (261)
..+--|+|||.+|..||..|- ... .+.+.+|+-....
T Consensus 8 l~GpsGvGKT~la~~la~~l~~~~~--~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALAELLFVGSE--RPLIRIDMSEYSE 45 (171)
T ss_dssp EESSTTSSHHHHHHHHHHHHT-SSC--CEEEEEEGGGHCS
T ss_pred EECCCCCCHHHHHHHHHHHhccCCc--cchHHHhhhcccc
Confidence 345679999999999999998 565 8999999887653
No 474
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=89.29 E-value=8.6 Score=31.66 Aligned_cols=65 Identities=12% Similarity=-0.038 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCCCCh---------------hHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHhCCCCeEEEEEcC
Q psy14655 106 PCDILFIDTPPGTGD---------------THLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~---------------~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~giv~N~ 169 (261)
..|+.|+|+|+-... .....+.. ..+.++.|+.... ..-.+...+.+.+...+.+ .-+|+|+
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r-ti~ViTK 201 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANVDLANSDALKLAKEVDPQGER-TIGVITK 201 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc-EEEEEEC
Confidence 379999999975421 11122221 1345555554332 2334455777788777766 4477898
Q ss_pred CCC
Q psy14655 170 NSV 172 (261)
Q Consensus 170 ~~~ 172 (261)
.+.
T Consensus 202 ~D~ 204 (240)
T smart00053 202 LDL 204 (240)
T ss_pred CCC
Confidence 664
No 475
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=89.24 E-value=0.3 Score=37.35 Aligned_cols=25 Identities=36% Similarity=0.310 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 8 GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
|+||||++..||..|.. -++|+|..
T Consensus 2 GsGKStvg~~lA~~L~~-------~fiD~D~~ 26 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLGR-------PFIDLDDE 26 (158)
T ss_dssp TSSHHHHHHHHHHHHTS-------EEEEHHHH
T ss_pred CCcHHHHHHHHHHHhCC-------CccccCHH
Confidence 89999999999988854 46888864
No 476
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=89.24 E-value=0.53 Score=38.39 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhc---CCCCeEEEEecC
Q psy14655 5 SKGGVGKSTTTVNLATAMKIC---YPDKEIGILDAD 37 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~---g~~~~VllvD~D 37 (261)
+.-|+||||+-..+|+.++.- -.++||.+||--
T Consensus 144 gpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 144 GPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred cCCCCChHHHHHHHHHHhhccccccCCceEEEEecc
Confidence 456999999999999999953 124999999964
No 477
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=89.23 E-value=6 Score=29.75 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=34.8
Q ss_pred CCCCEEEE--eCCCCCChhHHHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14655 105 GPCDILFI--DTPPGTGDTHLSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 105 ~~yd~Iii--D~~~~~~~~~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N 168 (261)
.+.|+|++ |+....+...-........-.+=+++..+.. +-.+..+..+.|+..|.+.+ +.++
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS 127 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVS 127 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEE
Confidence 56776665 5443222111112222214444444446665 67788888889999998877 4444
No 478
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.12 E-value=0.32 Score=37.80 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++++-.|+||||+|..|+..+
T Consensus 6 ~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 6 ILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 678889999999999998776
No 479
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=89.09 E-value=0.83 Score=43.25 Aligned_cols=66 Identities=20% Similarity=0.142 Sum_probs=44.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++|+|||+... ......+.. +|.+++|+..+..........+..+...+.+.+-+++|+.+.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~--aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGAST--ADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHh--CCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccc
Confidence 567899999996432 112233343 899999998766554555555666666676667789999764
No 480
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=89.05 E-value=2.2 Score=32.37 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC----CCCeEEEEEcCCC
Q psy14655 106 PCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNS 171 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~ 171 (261)
.+.+-|.|+++.... ..... +|.+++|.+ .+..++..+...+..+... +.+ +.+|.|+.+
T Consensus 46 ~~~l~i~D~~g~~~~---~~~~~--~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~D 110 (158)
T cd04103 46 SHLLLIRDEGGAPDA---QFASW--VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDA 110 (158)
T ss_pred EEEEEEEECCCCCch---hHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHH
Confidence 355777888765332 23344 888888887 7778888888777766543 234 558999844
No 481
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.04 E-value=4 Score=35.52 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=24.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++.-|+||||+...+...+.... +.+++.++
T Consensus 126 li~G~tGSGKTT~l~al~~~i~~~~-~~~i~tiE 158 (343)
T TIGR01420 126 LVTGPTGSGKSTTLASMIDYINKNA-AGHIITIE 158 (343)
T ss_pred EEECCCCCCHHHHHHHHHHhhCcCC-CCEEEEEc
Confidence 5678889999999999988876542 15666653
No 482
>PRK07413 hypothetical protein; Validated
Probab=88.98 E-value=1.3 Score=38.93 Aligned_cols=30 Identities=27% Similarity=0.062 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCC------eEEEEecC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDK------EIGILDAD 37 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~------~VllvD~D 37 (261)
--|=||||-|..+|...+-+| + ||+++=+=
T Consensus 208 G~GKGKTTAAlGlAlRA~G~G--~~~~~~~rV~ivQFl 243 (382)
T PRK07413 208 GEGKGKSTSALGKALQAIGRG--ISQDKSHRVLILQWL 243 (382)
T ss_pred CCCCCchHHHHHHHHHHhcCC--CCcccCceEEEEEEC
Confidence 347799999999999999998 7 99997543
No 483
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=88.90 E-value=1.7 Score=41.49 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=53.3
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
+|.+-+||||+..+ ..+..++.. +|..++|+.+...-.-+++.+.+.+.+.+.+.+ +++|+++
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrv--lDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmD 139 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRV--LDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMD 139 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHh--hcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcc
Confidence 48999999999875 335566666 999999999999999999999999999999966 7789865
No 484
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=88.64 E-value=0.29 Score=35.79 Aligned_cols=21 Identities=38% Similarity=0.387 Sum_probs=16.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhc
Q psy14655 5 SKGGVGKSTTTVNLATAMKIC 25 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~ 25 (261)
+.=|+||||++..++..|...
T Consensus 22 GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 22 GDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp ESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCCCHHHHHHHHHHHcCCC
Confidence 444999999999999988443
No 485
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=88.64 E-value=0.36 Score=36.98 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=17.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIG 32 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vl 32 (261)
++.+--|+||||++..|+.. | ..++
T Consensus 3 ~i~G~~stGKTTL~~~L~~~----g--~~~v 27 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR----G--YPVV 27 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH----T---EEE
T ss_pred EEECCCCCCHHHHHHHHHHc----C--CeEE
Confidence 45667799999999999966 7 6644
No 486
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=88.59 E-value=1.7 Score=42.15 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=45.7
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+..... ....... +|.+|+|+..+......+...+..+...+.+ +-+++|+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~--aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQV--TDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhh--CCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccc
Confidence 35678999999754322 2222333 8999999987766566666777777778888 5589999774
No 487
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=88.57 E-value=1.5 Score=41.27 Aligned_cols=65 Identities=15% Similarity=0.214 Sum_probs=46.6
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+.-+-|+|||+.-. ......+.. +|.+++|+..+..-.......+..+...+.+.+.+|+|+++.
T Consensus 50 g~~i~~IDtPGhe~fi~~m~~g~~~--~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 50 GRVLGFIDVPGHEKFLSNMLAGVGG--IDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred CcEEEEEECCCHHHHHHHHHHHhhc--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 34578999996421 222233344 899999999887666777777888888888876799999764
No 488
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=88.50 E-value=0.58 Score=40.30 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=26.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++.-|+||||+...|...+.+.-++.+++.|+
T Consensus 148 lI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 148 VISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 5788899999999999988876432237887776
No 489
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=88.45 E-value=0.47 Score=44.86 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=28.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++.+.-|+||||+.+.+...+.+.| .+||++-
T Consensus 177 lI~GpPGTGKT~t~~~ii~~~~~~g--~~VLv~a 208 (637)
T TIGR00376 177 LIHGPPGTGKTRTLVELIRQLVKRG--LRVLVTA 208 (637)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEEc
Confidence 4567789999999999999999999 8999975
No 490
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.44 E-value=0.35 Score=40.23 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~ 24 (261)
++.+..|+||||++..++..+..
T Consensus 47 ~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 47 LITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred EEEcCCCCCHHHHHHHHHHhcCC
Confidence 56788999999999999887763
No 491
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=88.40 E-value=0.38 Score=40.09 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g 26 (261)
+..+.-|+||||+|..+|..+.+.+
T Consensus 46 ll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 46 IFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 4567789999999999999987655
No 492
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=88.38 E-value=1.3 Score=40.21 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=49.9
Q ss_pred CCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
--+.|+|||+.-.-..+.+--+..+|.+++|+..+..-+-++...++.++..+.|++ +.+|+.+.
T Consensus 55 ~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~i-VAiNKiDk 119 (509)
T COG0532 55 PGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIV-VAINKIDK 119 (509)
T ss_pred ceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEE-EEEecccC
Confidence 478999999754332222222222899999999999999999999999999999955 88898664
No 493
>PRK09866 hypothetical protein; Provisional
Probab=88.32 E-value=2.5 Score=39.82 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCCCh-------hHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHhCCC-CeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD-------THLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKKLNI-PVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~-------~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~giv~N~~~~ 172 (261)
.+.+||+|||+--.. .....+.. ||.|+.|++... .+..+ ..+++.+.+.+. ..+.+|+|+++.
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~e--ADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLAR--ASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhh--CCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccC
Confidence 578999999964221 12334444 999999999765 33333 445677776663 236689999764
No 494
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=88.25 E-value=0.45 Score=41.54 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=28.1
Q ss_pred cccCCCCCcHHHHHHHHHHHH--HhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAM--KICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l--a~~g~~~~VllvD~D~ 38 (261)
|+.+.-|+|||.++.+++..+ ...+ .+++++-...
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~~~--~~~~~l~~n~ 41 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSEEG--KKVLYLCGNH 41 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccccC--CceEEEEecc
Confidence 677888999999999999999 6666 6776665443
No 495
>PRK11058 GTPase HflX; Provisional
Probab=88.24 E-value=6.3 Score=35.45 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=35.1
Q ss_pred CEEEEeCCCCCCh---hHH-------HHhhhcCCCeEEEEeCCCcc-hHHHHH---HHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 108 DILFIDTPPGTGD---THL-------SLIQNLFIDTAIIITIPDTM-SLQVAQ---RGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 108 d~IiiD~~~~~~~---~~~-------~~~~~~~ad~viiv~~~~~~-s~~~~~---~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
.++|+||++.... ... ..... ||.+++|++.+.. +..... .+++.+...+.+ +-+|.|+++..
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~--ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQ--ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhc--CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCC
Confidence 6778888865332 111 11223 8999999986543 333333 333333333455 45899998863
No 496
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.22 E-value=0.62 Score=40.08 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++++.-|+||||+...|+..+....+..+++.|+-.
T Consensus 152 lI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 152 LVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred EEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 567888999999999999877533333778777643
No 497
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=88.10 E-value=0.46 Score=38.09 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=24.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
++.++-|+|||++|...|..+-..|.-.|++++
T Consensus 23 ~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~ 55 (205)
T PF02562_consen 23 IVNGPAGTGKTFLALAAALELVKEGEYDKIIIT 55 (205)
T ss_dssp EEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 567888999999999999988877633566665
No 498
>PRK10646 ADP-binding protein; Provisional
Probab=88.08 E-value=0.34 Score=36.88 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=17.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHh
Q psy14655 4 SSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~ 24 (261)
.+-=|+||||++..++..|.-
T Consensus 34 ~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 34 YGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred ECCCCCCHHHHHHHHHHHcCC
Confidence 344499999999999999843
No 499
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=88.00 E-value=4.3 Score=34.70 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=24.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++++..|+||||+...|...+... .+++.|+
T Consensus 148 li~G~tGsGKTTll~al~~~~~~~---~~iv~ie 178 (308)
T TIGR02788 148 IISGGTGSGKTTFLKSLVDEIPKD---ERIITIE 178 (308)
T ss_pred EEECCCCCCHHHHHHHHHccCCcc---ccEEEEc
Confidence 567888999999998888777543 5677775
No 500
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=87.96 E-value=0.39 Score=40.76 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=24.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+||||+|..|+..+. ....||.|.-
T Consensus 6 il~G~pGSGKSTla~~L~~~~~------~~~~l~~D~~ 37 (300)
T PHA02530 6 LTVGVPGSGKSTWAREFAAKNP------KAVNVNRDDL 37 (300)
T ss_pred EEEcCCCCCHHHHHHHHHHHCC------CCEEEeccHH
Confidence 5678899999999999887651 3467777653
Done!