Query psy14655
Match_columns 261
No_of_seqs 155 out of 1868
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 17:16:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ph1_A Nucleotide-binding prot 100.0 2.8E-33 9.5E-38 232.7 14.9 218 1-239 22-243 (262)
2 1wcv_1 SOJ, segregation protei 100.0 7.1E-32 2.4E-36 223.6 9.0 209 1-247 10-231 (257)
3 3ea0_A ATPase, para family; al 100.0 7.2E-32 2.5E-36 221.6 7.3 210 1-250 8-234 (245)
4 3kjh_A CO dehydrogenase/acetyl 100.0 5.4E-31 1.9E-35 217.0 12.5 201 4-243 6-236 (254)
5 1g3q_A MIND ATPase, cell divis 100.0 2.5E-30 8.4E-35 211.5 12.7 209 1-248 6-223 (237)
6 4dzz_A Plasmid partitioning pr 100.0 4.3E-30 1.5E-34 205.6 12.8 183 1-249 5-192 (206)
7 3q9l_A Septum site-determining 100.0 1.8E-30 6.1E-35 215.1 9.3 208 1-245 6-233 (260)
8 1hyq_A MIND, cell division inh 100.0 6.6E-30 2.3E-34 212.3 10.9 201 1-242 6-216 (263)
9 3pg5_A Uncharacterized protein 100.0 1.2E-29 4E-34 219.9 12.7 231 1-243 5-319 (361)
10 2oze_A ORF delta'; para, walke 100.0 1.3E-29 4.3E-34 214.4 11.4 210 2-242 39-272 (298)
11 3end_A Light-independent proto 100.0 2.6E-29 9E-34 213.3 10.9 200 2-244 46-266 (307)
12 3ez9_A Para; DNA binding, wing 100.0 2.8E-29 9.5E-34 220.8 11.2 214 1-244 115-368 (403)
13 3fwy_A Light-independent proto 100.0 2.9E-29 9.8E-34 212.8 10.8 206 1-245 52-274 (314)
14 1cp2_A CP2, nitrogenase iron p 100.0 3.4E-29 1.2E-33 208.6 8.2 209 4-245 7-231 (269)
15 3ez2_A Plasmid partition prote 100.0 6.7E-30 2.3E-34 224.4 4.1 214 1-244 112-365 (398)
16 3la6_A Tyrosine-protein kinase 100.0 3.6E-28 1.2E-32 203.8 14.2 162 1-172 96-266 (286)
17 2afh_E Nitrogenase iron protei 100.0 4.7E-29 1.6E-33 210.0 8.8 210 4-246 8-235 (289)
18 3k9g_A PF-32 protein; ssgcid, 100.0 7.9E-29 2.7E-33 206.3 9.6 203 1-241 31-249 (267)
19 3bfv_A CAPA1, CAPB2, membrane 99.9 8.2E-28 2.8E-32 200.4 12.0 162 1-172 86-256 (271)
20 3cwq_A Para family chromosome 99.9 6.6E-28 2.2E-32 193.7 8.0 174 1-245 4-181 (209)
21 3cio_A ETK, tyrosine-protein k 99.9 4E-27 1.4E-31 198.9 11.7 162 1-172 108-278 (299)
22 2xj4_A MIPZ; replication, cell 99.9 4E-28 1.4E-32 204.1 4.6 205 1-243 8-239 (286)
23 3ug7_A Arsenical pump-driving 99.9 5E-24 1.7E-28 183.6 11.1 165 1-173 29-279 (349)
24 3zq6_A Putative arsenical pump 99.9 2.4E-24 8.3E-29 184.0 7.8 170 1-173 17-264 (324)
25 3fkq_A NTRC-like two-domain pr 99.9 2.3E-23 7.9E-28 181.2 11.6 155 1-169 147-321 (373)
26 2woj_A ATPase GET3; tail-ancho 99.9 2.1E-23 7.1E-28 179.9 10.7 165 1-171 21-275 (354)
27 3iqw_A Tail-anchored protein t 99.9 1.2E-22 4.2E-27 173.4 9.3 163 1-171 19-262 (334)
28 2woo_A ATPase GET3; tail-ancho 99.9 3.1E-22 1.1E-26 171.2 10.0 165 1-171 22-261 (329)
29 3io3_A DEHA2D07832P; chaperone 99.9 2E-22 6.7E-27 173.0 4.8 163 1-172 21-272 (348)
30 1byi_A Dethiobiotin synthase; 99.8 3.3E-21 1.1E-25 155.9 9.6 164 1-171 5-178 (224)
31 1ihu_A Arsenical pump-driving 99.8 1.9E-19 6.6E-24 165.3 11.1 163 1-172 11-239 (589)
32 3igf_A ALL4481 protein; two-do 99.8 1.7E-18 5.7E-23 149.6 12.8 158 1-169 5-252 (374)
33 1ihu_A Arsenical pump-driving 99.8 4.3E-19 1.5E-23 163.0 8.8 168 1-172 330-531 (589)
34 2xxa_A Signal recognition part 99.6 4.8E-16 1.6E-20 136.9 10.2 140 4-172 106-252 (433)
35 1yrb_A ATP(GTP)binding protein 99.6 5.9E-16 2E-20 127.8 5.7 40 1-43 17-56 (262)
36 1j8m_F SRP54, signal recogniti 99.6 2.5E-15 8.7E-20 126.2 8.9 140 3-171 103-250 (297)
37 1ls1_A Signal recognition part 99.5 3E-14 1E-18 119.7 8.6 138 5-171 105-248 (295)
38 1zu4_A FTSY; GTPase, signal re 99.5 1.9E-13 6.4E-18 116.0 12.2 140 2-171 110-265 (320)
39 2ffh_A Protein (FFH); SRP54, s 99.5 5.5E-14 1.9E-18 123.1 7.4 140 4-172 104-249 (425)
40 3of5_A Dethiobiotin synthetase 99.4 1.7E-13 6E-18 110.8 5.6 158 2-171 9-180 (228)
41 3dm5_A SRP54, signal recogniti 99.4 1.1E-12 3.9E-17 115.0 10.8 141 3-172 105-251 (443)
42 2v3c_C SRP54, signal recogniti 99.4 1.9E-12 6.4E-17 114.0 10.4 138 4-172 105-250 (432)
43 2j37_W Signal recognition part 99.3 2.6E-12 8.9E-17 114.9 7.8 139 5-172 108-252 (504)
44 3fgn_A Dethiobiotin synthetase 99.3 5.6E-11 1.9E-15 97.2 12.5 154 2-171 31-197 (251)
45 3kl4_A SRP54, signal recogniti 99.2 1.3E-11 4.4E-16 108.3 8.4 142 2-172 101-250 (433)
46 3qxc_A Dethiobiotin synthetase 99.2 1.2E-10 3.9E-15 94.8 13.3 158 2-171 26-200 (242)
47 3p32_A Probable GTPase RV1496/ 99.2 1.7E-10 5.7E-15 99.4 10.5 146 2-172 83-229 (355)
48 1vma_A Cell division protein F 99.1 3.1E-10 1.1E-14 95.5 9.8 140 2-171 109-260 (306)
49 2px0_A Flagellar biosynthesis 99.0 2E-10 6.8E-15 96.4 6.3 133 5-172 112-251 (296)
50 2r8r_A Sensor protein; KDPD, P 98.9 8.3E-10 2.8E-14 88.1 4.5 41 1-43 9-49 (228)
51 2p67_A LAO/AO transport system 98.6 1.3E-07 4.4E-12 80.9 10.0 143 3-172 61-206 (341)
52 3e70_C DPA, signal recognition 98.1 1.8E-05 6.1E-10 67.0 9.5 138 5-171 136-279 (328)
53 2obn_A Hypothetical protein; s 98.0 8.6E-05 2.9E-09 63.0 12.4 134 2-171 157-310 (349)
54 1g5t_A COB(I)alamin adenosyltr 97.9 4.9E-05 1.7E-09 59.2 9.3 34 2-38 33-66 (196)
55 2yhs_A FTSY, cell division pro 97.9 0.00015 5.2E-09 64.4 12.7 34 5-40 300-333 (503)
56 2rdo_7 EF-G, elongation factor 97.9 4.2E-05 1.4E-09 71.4 9.5 65 105-172 80-146 (704)
57 3pzx_A Formate--tetrahydrofola 97.8 4.4E-06 1.5E-10 73.0 1.3 47 1-52 61-110 (557)
58 2h5e_A Peptide chain release f 97.8 4.8E-05 1.6E-09 68.6 8.1 65 105-172 80-146 (529)
59 4a0g_A Adenosylmethionine-8-am 97.8 0.0003 1E-08 66.9 13.3 65 106-171 201-271 (831)
60 1u94_A RECA protein, recombina 97.6 6E-05 2.1E-09 64.5 5.8 37 2-40 67-103 (356)
61 2www_A Methylmalonic aciduria 97.6 0.00053 1.8E-08 58.5 11.3 37 3-41 79-115 (349)
62 3vqt_A RF-3, peptide chain rel 97.5 0.00052 1.8E-08 62.1 10.8 65 104-171 97-163 (548)
63 1rj9_A FTSY, signal recognitio 97.5 0.00048 1.7E-08 57.6 9.7 35 5-41 109-143 (304)
64 1xp8_A RECA protein, recombina 97.4 0.00022 7.6E-09 61.2 6.0 36 3-40 79-114 (366)
65 2qm8_A GTPase/ATPase; G protei 97.4 0.00067 2.3E-08 57.6 8.7 120 3-142 60-180 (337)
66 1dar_A EF-G, elongation factor 97.2 0.0013 4.6E-08 61.1 10.0 65 105-172 75-141 (691)
67 3iev_A GTP-binding protein ERA 97.2 0.00056 1.9E-08 57.3 6.1 64 106-172 58-134 (308)
68 2xex_A Elongation factor G; GT 97.2 0.0016 5.5E-08 60.6 9.7 65 105-172 73-139 (693)
69 3tr5_A RF-3, peptide chain rel 97.1 0.0008 2.7E-08 60.6 7.1 65 105-172 80-146 (528)
70 2c78_A Elongation factor TU-A; 97.1 0.00064 2.2E-08 59.2 6.0 66 105-172 73-140 (405)
71 1d2e_A Elongation factor TU (E 97.1 0.00064 2.2E-08 59.0 5.7 66 105-172 64-131 (397)
72 1wf3_A GTP-binding protein; GT 96.9 0.0016 5.6E-08 54.3 6.3 65 105-172 53-129 (301)
73 1xjc_A MOBB protein homolog; s 96.9 0.00092 3.1E-08 50.8 4.2 35 4-40 10-44 (169)
74 3io5_A Recombination and repai 96.7 0.0024 8.1E-08 53.5 5.7 37 4-40 34-70 (333)
75 3t1o_A Gliding protein MGLA; G 96.7 0.028 9.5E-07 42.8 11.5 65 105-172 72-147 (198)
76 2g0t_A Conserved hypothetical 96.7 0.0091 3.1E-07 50.6 9.2 130 3-169 175-323 (350)
77 4fn5_A EF-G 1, elongation fact 96.6 0.012 4.1E-07 54.9 10.6 64 105-171 83-148 (709)
78 2yvu_A Probable adenylyl-sulfa 96.5 0.0015 5E-08 50.2 3.4 36 2-39 17-52 (186)
79 1z2a_A RAS-related protein RAB 96.5 0.0096 3.3E-07 44.1 7.5 65 105-172 52-121 (168)
80 3j25_A Tetracycline resistance 96.5 0.0025 8.6E-08 58.8 4.9 65 105-172 65-131 (638)
81 2b8t_A Thymidine kinase; deoxy 96.4 0.0063 2.1E-07 48.4 6.5 31 2-34 16-46 (223)
82 2dyk_A GTP-binding protein; GT 96.4 0.0048 1.6E-07 45.5 5.6 64 106-172 48-120 (161)
83 1xx6_A Thymidine kinase; NESG, 96.3 0.011 3.7E-07 45.8 6.9 29 5-35 15-43 (191)
84 2cvh_A DNA repair and recombin 96.3 0.0038 1.3E-07 48.9 4.3 34 2-40 24-57 (220)
85 2nzj_A GTP-binding protein REM 96.2 0.021 7.1E-07 42.6 8.1 64 106-172 51-123 (175)
86 3bh0_A DNAB-like replicative h 96.2 0.0048 1.6E-07 51.7 4.9 36 2-39 72-107 (315)
87 2dr3_A UPF0273 protein PH0284; 96.1 0.004 1.4E-07 49.7 3.8 35 3-39 28-62 (247)
88 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0032 1.1E-07 51.2 3.2 35 2-38 8-42 (260)
89 3sjy_A Translation initiation 96.1 0.016 5.5E-07 50.2 7.8 65 106-172 74-141 (403)
90 1z0j_A RAB-22, RAS-related pro 96.1 0.023 7.8E-07 42.1 7.7 66 105-172 53-123 (170)
91 2efe_B Small GTP-binding prote 96.1 0.04 1.4E-06 41.3 9.1 66 105-172 59-129 (181)
92 2w58_A DNAI, primosome compone 96.0 0.0046 1.6E-07 47.9 3.7 34 2-37 58-91 (202)
93 2zr9_A Protein RECA, recombina 96.0 0.0042 1.5E-07 52.9 3.7 35 3-39 66-100 (349)
94 4dcu_A GTP-binding protein ENG 96.0 0.0092 3.2E-07 52.7 6.0 65 105-172 69-143 (456)
95 3p26_A Elongation factor 1 alp 95.9 0.031 1.1E-06 49.6 9.0 66 105-172 109-183 (483)
96 4a1f_A DNAB helicase, replicat 95.9 0.0059 2E-07 51.7 4.1 37 2-40 50-86 (338)
97 1ky3_A GTP-binding protein YPT 95.9 0.055 1.9E-06 40.4 9.3 65 105-172 56-130 (182)
98 3bgw_A DNAB-like replicative h 95.9 0.0059 2E-07 53.7 4.2 38 2-41 201-238 (444)
99 2wsm_A Hydrogenase expression/ 95.8 0.006 2.1E-07 47.9 3.4 36 2-40 34-69 (221)
100 1ega_A Protein (GTP-binding pr 95.7 0.014 4.7E-07 48.6 5.5 64 105-172 54-128 (301)
101 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0085 2.9E-07 47.2 4.0 35 3-39 28-62 (235)
102 2bcg_Y Protein YP2, GTP-bindin 95.7 0.053 1.8E-06 41.8 8.5 66 105-172 55-125 (206)
103 2dy1_A Elongation factor G; tr 95.7 0.017 5.7E-07 53.5 6.4 65 105-172 72-138 (665)
104 2lkc_A Translation initiation 95.7 0.028 9.7E-07 42.0 6.7 65 105-172 53-119 (178)
105 1rz3_A Hypothetical protein rb 95.7 0.0074 2.5E-07 46.9 3.5 36 3-40 27-62 (201)
106 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.055 1.9E-06 40.3 8.3 64 106-172 55-128 (177)
107 1np6_A Molybdopterin-guanine d 95.6 0.013 4.5E-07 44.6 4.7 36 3-40 11-46 (174)
108 1z0f_A RAB14, member RAS oncog 95.6 0.069 2.4E-06 39.7 8.6 65 105-172 62-132 (179)
109 2j9r_A Thymidine kinase; TK1, 95.5 0.011 3.9E-07 46.5 4.0 30 4-35 34-63 (214)
110 3b9q_A Chloroplast SRP recepto 95.5 0.014 4.7E-07 48.6 4.7 34 5-40 107-140 (302)
111 1z08_A RAS-related protein RAB 95.4 0.049 1.7E-06 40.2 7.3 65 105-172 53-123 (170)
112 2gf9_A RAS-related protein RAB 95.4 0.063 2.1E-06 40.7 8.0 66 105-172 69-139 (189)
113 1ek0_A Protein (GTP-binding pr 95.4 0.056 1.9E-06 39.8 7.5 66 105-172 50-120 (170)
114 3bos_A Putative DNA replicatio 95.4 0.012 4.2E-07 46.4 3.9 36 2-39 56-91 (242)
115 3avx_A Elongation factor TS, e 95.4 0.03 1E-06 54.7 7.1 66 105-172 357-424 (1289)
116 1nks_A Adenylate kinase; therm 95.4 0.0084 2.9E-07 45.8 2.8 34 2-37 5-38 (194)
117 2hjg_A GTP-binding protein ENG 95.4 0.024 8.2E-07 49.7 6.1 66 105-173 49-124 (436)
118 3tkl_A RAS-related protein RAB 95.3 0.054 1.8E-06 41.2 7.2 64 106-172 64-133 (196)
119 2il1_A RAB12; G-protein, GDP, 95.2 0.039 1.3E-06 42.2 6.1 65 106-172 74-143 (192)
120 2zts_A Putative uncharacterize 95.2 0.017 5.9E-07 46.0 4.2 37 2-40 34-71 (251)
121 1g16_A RAS-related protein SEC 95.2 0.052 1.8E-06 40.0 6.7 64 106-172 51-120 (170)
122 2og2_A Putative signal recogni 95.2 0.02 6.7E-07 48.9 4.7 34 5-40 164-197 (359)
123 1zbd_A Rabphilin-3A; G protein 95.2 0.094 3.2E-06 40.2 8.3 65 105-172 55-125 (203)
124 3i8s_A Ferrous iron transport 95.1 0.11 3.9E-06 42.3 9.2 65 105-172 48-124 (274)
125 3q85_A GTP-binding protein REM 95.1 0.046 1.6E-06 40.4 6.3 65 105-172 49-121 (169)
126 3ec2_A DNA replication protein 95.1 0.011 3.8E-07 44.9 2.8 33 2-36 42-75 (180)
127 1x3s_A RAS-related protein RAB 95.1 0.048 1.7E-06 41.3 6.5 66 105-172 62-133 (195)
128 2q6t_A DNAB replication FORK h 95.1 0.016 5.6E-07 50.9 4.2 36 2-39 204-240 (444)
129 2xtp_A GTPase IMAP family memb 95.1 0.012 4E-07 47.6 3.0 65 105-172 69-151 (260)
130 2ew1_A RAS-related protein RAB 95.1 0.072 2.5E-06 41.2 7.4 65 106-172 74-143 (201)
131 3hr8_A Protein RECA; alpha and 95.1 0.015 5.2E-07 49.5 3.7 35 4-40 67-101 (356)
132 2r6a_A DNAB helicase, replicat 95.0 0.018 6.3E-07 50.7 4.3 37 2-40 207-244 (454)
133 3izy_P Translation initiation 95.0 0.041 1.4E-06 49.5 6.4 64 106-172 51-116 (537)
134 2ywe_A GTP-binding protein LEP 95.0 0.11 3.7E-06 47.4 9.2 65 105-172 71-137 (600)
135 3tw8_B RAS-related protein RAB 94.9 0.042 1.4E-06 41.0 5.6 65 106-172 57-125 (181)
136 1vg8_A RAS-related protein RAB 94.9 0.057 1.9E-06 41.5 6.5 65 105-172 55-129 (207)
137 2bme_A RAB4A, RAS-related prot 94.9 0.052 1.8E-06 40.9 6.1 64 106-172 58-127 (186)
138 1kht_A Adenylate kinase; phosp 94.9 0.013 4.5E-07 44.6 2.7 34 2-37 7-40 (192)
139 1q57_A DNA primase/helicase; d 94.9 0.012 4.2E-07 52.5 2.9 37 2-40 246-283 (503)
140 3cph_A RAS-related protein SEC 94.9 0.082 2.8E-06 40.8 7.4 65 106-172 68-137 (213)
141 1jbk_A CLPB protein; beta barr 94.9 0.021 7.3E-07 43.1 3.9 33 2-36 47-86 (195)
142 2hf9_A Probable hydrogenase ni 94.9 0.014 4.9E-07 45.8 2.8 35 3-40 43-77 (226)
143 3kkq_A RAS-related protein M-R 94.8 0.18 6.2E-06 37.7 8.9 64 106-172 65-135 (183)
144 1a7j_A Phosphoribulokinase; tr 94.8 0.01 3.5E-07 49.1 1.9 36 3-40 10-45 (290)
145 3ihw_A Centg3; RAS, centaurin, 94.8 0.038 1.3E-06 42.0 5.0 62 105-172 65-131 (184)
146 2j69_A Bacterial dynamin-like 94.7 0.063 2.1E-06 50.0 7.2 63 107-172 174-242 (695)
147 2gks_A Bifunctional SAT/APS ki 94.7 0.016 5.4E-07 52.4 3.1 35 2-38 376-410 (546)
148 1z06_A RAS-related protein RAB 94.7 0.17 5.9E-06 38.2 8.7 64 106-172 68-139 (189)
149 3hjn_A DTMP kinase, thymidylat 94.7 0.025 8.5E-07 43.9 3.8 29 5-35 7-35 (197)
150 1mky_A Probable GTP-binding pr 94.7 0.1 3.5E-06 45.7 8.1 64 106-172 48-122 (439)
151 1zo1_I IF2, translation initia 94.6 0.065 2.2E-06 47.8 6.7 66 105-173 49-116 (501)
152 4dkx_A RAS-related protein RAB 94.6 0.24 8.3E-06 38.8 9.4 65 105-172 60-130 (216)
153 1n0u_A EF-2, elongation factor 94.6 0.084 2.9E-06 50.2 7.7 64 105-171 96-161 (842)
154 2pez_A Bifunctional 3'-phospho 94.5 0.026 8.7E-07 42.8 3.4 35 3-39 10-44 (179)
155 1m7g_A Adenylylsulfate kinase; 94.5 0.022 7.6E-07 44.5 3.0 35 2-38 29-64 (211)
156 2qgz_A Helicase loader, putati 94.4 0.029 9.8E-07 46.8 3.8 34 2-37 156-190 (308)
157 1cr0_A DNA primase/helicase; R 94.4 0.028 9.5E-07 46.4 3.6 34 3-38 40-74 (296)
158 1uj2_A Uridine-cytidine kinase 94.4 0.021 7.3E-07 46.0 2.8 35 3-39 27-66 (252)
159 2z43_A DNA repair and recombin 94.4 0.02 6.8E-07 48.1 2.7 35 3-39 112-152 (324)
160 2p65_A Hypothetical protein PF 94.3 0.024 8.1E-07 42.7 2.8 33 2-36 47-86 (187)
161 3lxw_A GTPase IMAP family memb 94.3 0.072 2.5E-06 42.8 5.7 65 105-172 68-151 (247)
162 3uie_A Adenylyl-sulfate kinase 94.2 0.03 1E-06 43.3 3.3 35 3-39 30-64 (200)
163 2pbr_A DTMP kinase, thymidylat 94.1 0.042 1.4E-06 41.9 3.9 32 2-35 4-35 (195)
164 2kjq_A DNAA-related protein; s 94.1 0.027 9.2E-07 41.6 2.6 33 3-37 41-73 (149)
165 3mca_A HBS1, elongation factor 94.1 0.0061 2.1E-07 55.7 -1.2 66 105-172 253-327 (592)
166 2z0h_A DTMP kinase, thymidylat 94.0 0.045 1.5E-06 41.9 3.9 32 2-35 4-35 (197)
167 1v5w_A DMC1, meiotic recombina 93.9 0.035 1.2E-06 47.0 3.4 35 3-39 127-167 (343)
168 4i1u_A Dephospho-COA kinase; s 93.9 0.22 7.6E-06 39.0 7.6 37 106-146 111-147 (210)
169 1nrj_B SR-beta, signal recogni 93.8 0.11 3.9E-06 40.2 5.9 66 106-172 54-132 (218)
170 2o52_A RAS-related protein RAB 93.7 0.07 2.4E-06 41.0 4.5 64 106-172 73-142 (200)
171 1qhx_A CPT, protein (chloramph 93.7 0.031 1.1E-06 42.1 2.4 31 2-37 7-37 (178)
172 2orw_A Thymidine kinase; TMTK, 93.6 0.056 1.9E-06 41.4 3.8 30 4-35 9-38 (184)
173 2elf_A Protein translation elo 93.5 0.23 7.7E-06 42.5 7.8 64 105-171 58-124 (370)
174 1n0w_A DNA repair protein RAD5 93.5 0.049 1.7E-06 43.1 3.4 35 3-39 29-69 (243)
175 1nlf_A Regulatory protein REPA 93.5 0.055 1.9E-06 44.2 3.7 35 3-39 35-79 (279)
176 1l8q_A Chromosomal replication 93.5 0.054 1.9E-06 45.2 3.7 35 2-38 41-75 (324)
177 2qby_B CDC6 homolog 3, cell di 93.4 0.049 1.7E-06 46.3 3.5 35 2-38 49-91 (384)
178 3e2i_A Thymidine kinase; Zn-bi 93.2 0.057 1.9E-06 42.5 3.1 27 7-35 37-63 (219)
179 1f60_A Elongation factor EEF1A 93.1 0.3 1E-05 42.9 8.1 68 105-172 83-157 (458)
180 3j2k_7 ERF3, eukaryotic polype 93.0 0.21 7.2E-06 43.7 6.9 66 105-172 93-167 (439)
181 2v1u_A Cell division control p 93.0 0.087 3E-06 44.6 4.3 37 2-40 48-90 (387)
182 2qby_A CDC6 homolog 1, cell di 92.8 0.068 2.3E-06 45.3 3.5 36 2-39 49-87 (386)
183 1zun_B Sulfate adenylate trans 92.8 0.31 1.1E-05 42.5 7.7 66 105-172 102-169 (434)
184 1h65_A Chloroplast outer envel 92.8 0.065 2.2E-06 43.5 3.1 68 105-172 85-166 (270)
185 1g8f_A Sulfate adenylyltransfe 92.7 0.065 2.2E-06 47.9 3.2 36 2-38 399-435 (511)
186 3k53_A Ferrous iron transport 92.7 0.54 1.9E-05 38.0 8.6 64 105-171 48-120 (271)
187 1w5s_A Origin recognition comp 92.6 0.093 3.2E-06 45.0 4.0 34 4-39 58-97 (412)
188 2chg_A Replication factor C sm 92.5 0.043 1.5E-06 42.4 1.7 35 2-36 42-76 (226)
189 1x6v_B Bifunctional 3'-phospho 92.5 0.067 2.3E-06 49.0 3.0 36 2-39 56-91 (630)
190 4hlc_A DTMP kinase, thymidylat 92.5 0.089 3E-06 41.0 3.4 27 5-34 9-35 (205)
191 3n70_A Transport activator; si 92.3 0.041 1.4E-06 40.2 1.2 35 2-39 28-62 (145)
192 1jny_A EF-1-alpha, elongation 92.3 0.33 1.1E-05 42.3 7.3 66 105-172 82-156 (435)
193 1nn5_A Similar to deoxythymidy 92.2 0.096 3.3E-06 40.6 3.4 31 2-34 13-43 (215)
194 2z4s_A Chromosomal replication 92.2 0.096 3.3E-06 45.9 3.6 37 2-38 134-170 (440)
195 4dcu_A GTP-binding protein ENG 92.0 0.16 5.3E-06 44.7 4.8 65 105-172 241-318 (456)
196 3cmw_A Protein RECA, recombina 92.0 0.11 3.6E-06 52.9 4.0 38 2-41 387-424 (1706)
197 2f1r_A Molybdopterin-guanine d 92.0 0.07 2.4E-06 40.4 2.2 33 5-39 9-41 (171)
198 3def_A T7I23.11 protein; chlor 91.9 0.11 3.7E-06 42.0 3.5 68 105-172 82-163 (262)
199 3tqc_A Pantothenate kinase; bi 91.9 0.13 4.6E-06 43.0 4.0 35 3-39 97-133 (321)
200 2ce2_X GTPase HRAS; signaling 91.9 0.68 2.3E-05 33.4 7.6 65 105-172 49-120 (166)
201 1fnn_A CDC6P, cell division co 91.8 0.15 5.3E-06 43.2 4.5 37 2-40 48-85 (389)
202 3c8u_A Fructokinase; YP_612366 91.8 0.13 4.6E-06 39.8 3.7 35 3-39 27-61 (208)
203 3cmw_A Protein RECA, recombina 91.7 0.12 4E-06 52.6 4.0 37 2-40 736-772 (1706)
204 1gtv_A TMK, thymidylate kinase 91.7 0.039 1.3E-06 42.9 0.5 31 3-35 5-35 (214)
205 2wwf_A Thymidilate kinase, put 91.3 0.14 4.9E-06 39.5 3.4 32 2-35 14-45 (212)
206 2vhj_A Ntpase P4, P4; non- hyd 91.2 0.053 1.8E-06 45.5 0.8 31 2-37 127-157 (331)
207 4fcw_A Chaperone protein CLPB; 91.2 0.12 4.1E-06 42.6 3.0 36 3-40 52-87 (311)
208 2axn_A 6-phosphofructo-2-kinas 91.2 0.13 4.4E-06 46.1 3.4 35 2-38 39-73 (520)
209 3syl_A Protein CBBX; photosynt 91.2 0.13 4.5E-06 42.3 3.2 36 2-37 71-108 (309)
210 2bjv_A PSP operon transcriptio 91.1 0.1 3.5E-06 42.1 2.5 36 2-39 33-68 (265)
211 3upu_A ATP-dependent DNA helic 91.1 0.15 5.3E-06 44.8 3.7 31 2-34 49-80 (459)
212 4edh_A DTMP kinase, thymidylat 91.0 0.17 5.9E-06 39.6 3.6 31 3-35 11-41 (213)
213 1sq5_A Pantothenate kinase; P- 91.0 0.15 5.3E-06 42.3 3.5 35 4-40 86-122 (308)
214 3e1s_A Exodeoxyribonuclease V, 91.0 0.16 5.3E-06 46.2 3.7 31 2-34 208-238 (574)
215 3cmu_A Protein RECA, recombina 90.9 0.17 6E-06 52.1 4.3 38 2-41 387-424 (2050)
216 2ewv_A Twitching motility prot 90.8 1.8 6.1E-05 36.9 10.1 32 3-36 141-173 (372)
217 3lw7_A Adenylate kinase relate 90.6 0.1 3.6E-06 38.6 2.0 26 2-33 5-30 (179)
218 1ly1_A Polynucleotide kinase; 90.6 0.13 4.3E-06 38.6 2.4 31 2-38 6-36 (181)
219 2ehv_A Hypothetical protein PH 90.6 0.27 9.1E-06 38.9 4.5 34 4-39 36-70 (251)
220 1gvn_B Zeta; postsegregational 90.5 0.082 2.8E-06 43.5 1.3 32 2-38 37-68 (287)
221 1odf_A YGR205W, hypothetical 3 90.5 0.12 4.1E-06 42.6 2.3 37 3-39 36-73 (290)
222 1m8p_A Sulfate adenylyltransfe 90.5 0.16 5.6E-06 46.0 3.4 36 2-38 400-435 (573)
223 3kb2_A SPBC2 prophage-derived 90.4 0.12 4.2E-06 38.3 2.2 30 2-38 5-34 (173)
224 3geh_A MNME, tRNA modification 90.0 0.39 1.3E-05 42.3 5.3 64 105-173 270-343 (462)
225 2v54_A DTMP kinase, thymidylat 89.9 0.12 4.2E-06 39.6 1.8 31 2-36 8-38 (204)
226 2p5t_B PEZT; postsegregational 89.9 0.083 2.8E-06 42.5 0.9 33 2-39 36-68 (253)
227 3t15_A Ribulose bisphosphate c 89.9 0.15 5.2E-06 41.9 2.5 30 3-37 41-70 (293)
228 4bas_A ADP-ribosylation factor 89.8 1.1 3.7E-05 33.7 7.2 65 105-172 61-139 (199)
229 3clv_A RAB5 protein, putative; 89.7 1.1 3.9E-05 33.5 7.3 62 107-171 93-158 (208)
230 4dhe_A Probable GTP-binding pr 89.7 0.76 2.6E-05 35.5 6.4 67 105-172 77-156 (223)
231 3trf_A Shikimate kinase, SK; a 89.7 0.16 5.3E-06 38.4 2.2 21 2-22 9-29 (185)
232 4ag6_A VIRB4 ATPase, type IV s 89.6 0.27 9.3E-06 42.1 4.0 35 2-38 39-73 (392)
233 3jvv_A Twitching mobility prot 89.6 1.7 5.7E-05 36.8 8.8 32 2-35 127-159 (356)
234 2rhm_A Putative kinase; P-loop 89.6 0.12 4.1E-06 39.2 1.5 21 2-22 9-29 (193)
235 3do6_A Formate--tetrahydrofola 89.5 0.28 9.7E-06 42.9 3.8 45 2-51 51-95 (543)
236 3izq_1 HBS1P, elongation facto 89.3 0.97 3.3E-05 41.3 7.5 68 105-172 243-317 (611)
237 2i1q_A DNA repair and recombin 89.2 0.17 6E-06 42.1 2.4 37 3-39 103-153 (322)
238 1zj6_A ADP-ribosylation factor 89.2 2.2 7.6E-05 31.7 8.6 66 105-172 58-129 (187)
239 3con_A GTPase NRAS; structural 89.1 0.92 3.1E-05 33.9 6.3 65 105-172 67-138 (190)
240 3lda_A DNA repair protein RAD5 89.1 0.2 6.8E-06 43.3 2.7 35 3-39 183-223 (400)
241 2a5y_B CED-4; apoptosis; HET: 89.0 0.16 5.5E-06 45.7 2.2 33 3-37 157-193 (549)
242 3cmu_A Protein RECA, recombina 89.0 0.26 8.8E-06 50.9 3.8 37 2-40 1431-1467(2050)
243 3ld9_A DTMP kinase, thymidylat 89.0 0.3 1E-05 38.5 3.5 37 2-40 25-62 (223)
244 1ofh_A ATP-dependent HSL prote 88.9 0.32 1.1E-05 39.8 3.8 33 2-39 54-86 (310)
245 3lv8_A DTMP kinase, thymidylat 88.8 0.28 9.5E-06 39.1 3.2 30 3-34 32-62 (236)
246 2h57_A ADP-ribosylation factor 88.7 2.2 7.6E-05 31.8 8.2 65 105-172 65-138 (190)
247 1y63_A LMAJ004144AAA protein; 88.6 0.19 6.5E-06 38.1 2.0 30 2-37 14-43 (184)
248 2qz4_A Paraplegin; AAA+, SPG7, 88.6 0.35 1.2E-05 38.5 3.7 32 2-38 43-74 (262)
249 3v9p_A DTMP kinase, thymidylat 88.5 0.24 8.2E-06 39.3 2.6 31 2-34 29-63 (227)
250 2plr_A DTMP kinase, probable t 88.5 0.21 7.3E-06 38.4 2.3 25 2-26 8-32 (213)
251 1via_A Shikimate kinase; struc 88.4 0.22 7.6E-06 37.3 2.3 30 2-38 8-37 (175)
252 3t61_A Gluconokinase; PSI-biol 88.4 0.22 7.4E-06 38.3 2.2 30 2-38 22-51 (202)
253 2hxs_A RAB-26, RAS-related pro 88.4 1 3.5E-05 33.1 6.1 65 106-172 55-127 (178)
254 1r5b_A Eukaryotic peptide chai 88.3 0.58 2E-05 41.2 5.3 66 105-172 119-193 (467)
255 4tmk_A Protein (thymidylate ki 88.3 0.32 1.1E-05 38.1 3.2 30 3-34 8-38 (213)
256 3vaa_A Shikimate kinase, SK; s 88.3 0.23 7.7E-06 38.2 2.3 30 2-38 29-58 (199)
257 1r6b_X CLPA protein; AAA+, N-t 88.2 0.98 3.4E-05 42.3 7.0 43 2-49 492-536 (758)
258 3a8t_A Adenylate isopentenyltr 88.2 2.2 7.4E-05 35.9 8.3 32 2-40 44-75 (339)
259 2pt5_A Shikimate kinase, SK; a 88.1 0.24 8E-06 36.7 2.2 30 2-38 4-33 (168)
260 1e6c_A Shikimate kinase; phosp 88.1 0.23 8E-06 36.9 2.2 29 2-37 6-34 (173)
261 3iij_A Coilin-interacting nucl 88.1 0.23 8E-06 37.3 2.2 21 2-22 15-35 (180)
262 2cdn_A Adenylate kinase; phosp 88.1 0.22 7.5E-06 38.2 2.1 29 2-37 24-52 (201)
263 2iyv_A Shikimate kinase, SK; t 88.0 0.24 8.1E-06 37.4 2.2 30 2-38 6-35 (184)
264 3d3q_A TRNA delta(2)-isopenten 88.0 0.28 9.7E-06 41.3 2.9 31 2-39 11-41 (340)
265 2jaq_A Deoxyguanosine kinase; 88.0 0.24 8.3E-06 37.8 2.3 21 2-22 4-24 (205)
266 1r8s_A ADP-ribosylation factor 87.9 3.8 0.00013 29.4 8.9 65 105-172 42-113 (164)
267 1wb1_A Translation elongation 87.9 0.48 1.6E-05 42.0 4.4 65 105-172 71-137 (482)
268 3bc1_A RAS-related protein RAB 87.9 1.4 4.9E-05 32.7 6.7 64 106-172 69-139 (195)
269 1s0u_A EIF-2-gamma, translatio 87.9 0.67 2.3E-05 40.0 5.3 66 107-173 81-148 (408)
270 2fna_A Conserved hypothetical 87.8 0.32 1.1E-05 40.5 3.1 32 2-38 34-65 (357)
271 1tev_A UMP-CMP kinase; ploop, 87.7 0.26 8.8E-06 37.3 2.3 29 2-37 7-35 (196)
272 2ze6_A Isopentenyl transferase 87.7 0.29 9.9E-06 39.3 2.7 30 2-38 5-34 (253)
273 1kk1_A EIF2gamma; initiation o 87.6 0.48 1.7E-05 40.9 4.2 64 107-172 83-149 (410)
274 4a74_A DNA repair and recombin 87.6 0.36 1.2E-05 37.6 3.2 33 4-38 31-69 (231)
275 1pzn_A RAD51, DNA repair and r 87.6 0.36 1.2E-05 40.9 3.3 34 4-39 137-176 (349)
276 1s1m_A CTP synthase; CTP synth 87.4 0.44 1.5E-05 42.8 3.9 35 4-40 11-45 (545)
277 2h17_A ADP-ribosylation factor 87.4 2 7E-05 31.8 7.3 66 105-172 63-134 (181)
278 3cm0_A Adenylate kinase; ATP-b 87.4 0.28 9.6E-06 36.9 2.3 21 2-22 8-28 (186)
279 1zp6_A Hypothetical protein AT 87.3 0.21 7.3E-06 37.8 1.6 30 3-37 14-43 (191)
280 1zuh_A Shikimate kinase; alpha 87.1 0.29 1E-05 36.2 2.2 30 2-38 11-40 (168)
281 2a9k_A RAS-related protein RAL 87.0 1.6 5.3E-05 32.3 6.4 65 105-172 64-135 (187)
282 1njg_A DNA polymerase III subu 87.0 0.29 9.9E-06 38.0 2.2 24 2-25 49-72 (250)
283 1u8z_A RAS-related protein RAL 86.9 1.4 4.8E-05 31.8 5.9 65 105-172 50-121 (168)
284 1w36_D RECD, exodeoxyribonucle 86.8 0.43 1.5E-05 43.6 3.5 33 2-34 168-202 (608)
285 1sxj_A Activator 1 95 kDa subu 86.7 0.38 1.3E-05 42.9 3.1 33 2-39 81-113 (516)
286 1c1y_A RAS-related protein RAP 86.7 1.6 5.5E-05 31.5 6.2 65 105-172 49-120 (167)
287 2erx_A GTP-binding protein DI- 86.6 1.1 3.8E-05 32.6 5.3 65 105-172 49-121 (172)
288 1g7s_A Translation initiation 86.6 0.93 3.2E-05 41.3 5.6 64 106-172 69-134 (594)
289 2g6b_A RAS-related protein RAB 86.6 1.4 4.9E-05 32.4 5.9 64 106-172 59-128 (180)
290 3oes_A GTPase rhebl1; small GT 86.6 1.4 4.7E-05 33.4 5.9 65 105-172 70-141 (201)
291 2b6h_A ADP-ribosylation factor 86.6 3.5 0.00012 30.9 8.3 65 105-172 71-142 (192)
292 2bwj_A Adenylate kinase 5; pho 86.5 0.27 9.2E-06 37.4 1.8 21 2-22 16-36 (199)
293 4eaq_A DTMP kinase, thymidylat 86.5 0.48 1.6E-05 37.4 3.3 29 3-34 31-59 (229)
294 3fb4_A Adenylate kinase; psych 86.5 0.32 1.1E-05 37.7 2.2 21 2-22 4-24 (216)
295 3h4m_A Proteasome-activating n 86.5 0.46 1.6E-05 38.5 3.3 31 2-37 55-85 (285)
296 2qt1_A Nicotinamide riboside k 86.4 0.21 7.1E-06 38.6 1.1 31 3-39 26-56 (207)
297 2xb4_A Adenylate kinase; ATP-b 86.2 0.36 1.2E-05 37.9 2.4 21 2-22 4-24 (223)
298 1c9k_A COBU, adenosylcobinamid 86.1 0.3 1E-05 37.2 1.8 30 3-38 4-33 (180)
299 2c95_A Adenylate kinase 1; tra 86.1 0.29 1E-05 37.1 1.8 29 2-37 13-41 (196)
300 2p5s_A RAS and EF-hand domain 86.0 1.4 4.8E-05 33.3 5.7 65 105-172 75-145 (199)
301 1e4v_A Adenylate kinase; trans 85.9 0.32 1.1E-05 37.8 1.9 21 2-22 4-24 (214)
302 2fg5_A RAB-22B, RAS-related pr 85.9 1.4 4.8E-05 33.1 5.6 66 105-172 70-140 (192)
303 1hqc_A RUVB; extended AAA-ATPa 85.9 0.54 1.8E-05 38.8 3.5 33 2-39 42-74 (324)
304 3llu_A RAS-related GTP-binding 85.9 2.6 9E-05 31.7 7.2 65 105-172 67-141 (196)
305 1um8_A ATP-dependent CLP prote 85.8 0.49 1.7E-05 40.2 3.2 32 3-39 77-108 (376)
306 1qf9_A UMP/CMP kinase, protein 85.8 0.3 1E-05 36.8 1.7 29 2-37 10-38 (194)
307 3te6_A Regulatory protein SIR3 85.7 0.47 1.6E-05 39.6 3.0 39 2-40 49-92 (318)
308 1z6t_A APAF-1, apoptotic prote 85.7 0.28 9.7E-06 44.3 1.8 37 2-39 151-190 (591)
309 1kag_A SKI, shikimate kinase I 85.7 0.32 1.1E-05 36.1 1.8 28 3-37 9-36 (173)
310 1vco_A CTP synthetase; tetrame 85.7 0.62 2.1E-05 41.9 3.9 34 4-39 20-53 (550)
311 1d2n_A N-ethylmaleimide-sensit 85.6 0.55 1.9E-05 37.8 3.3 30 2-36 68-97 (272)
312 3be4_A Adenylate kinase; malar 85.6 0.33 1.1E-05 37.8 1.9 21 2-22 9-29 (217)
313 2atx_A Small GTP binding prote 85.6 1.5 5.3E-05 32.8 5.7 65 105-172 64-134 (194)
314 1ojl_A Transcriptional regulat 85.5 0.26 8.9E-06 40.8 1.3 36 2-39 29-64 (304)
315 1aky_A Adenylate kinase; ATP:A 85.5 0.39 1.3E-05 37.4 2.3 21 2-22 8-28 (220)
316 1lv7_A FTSH; alpha/beta domain 85.5 0.61 2.1E-05 37.2 3.5 30 3-37 50-79 (257)
317 2qtf_A Protein HFLX, GTP-bindi 85.5 2 6.7E-05 36.5 6.8 63 107-172 226-304 (364)
318 1r2q_A RAS-related protein RAB 85.5 1.9 6.5E-05 31.2 6.1 66 105-172 53-123 (170)
319 4b3f_X DNA-binding protein smu 85.5 0.58 2E-05 43.0 3.7 32 3-36 210-241 (646)
320 2if2_A Dephospho-COA kinase; a 85.4 0.26 8.8E-06 37.9 1.2 27 3-37 6-32 (204)
321 2atv_A RERG, RAS-like estrogen 85.4 2.9 9.9E-05 31.4 7.3 65 105-172 74-144 (196)
322 1tf7_A KAIC; homohexamer, hexa 85.3 0.56 1.9E-05 42.0 3.5 34 3-38 286-319 (525)
323 2orv_A Thymidine kinase; TP4A 85.2 0.83 2.8E-05 36.2 4.0 30 4-35 25-54 (234)
324 2jeo_A Uridine-cytidine kinase 85.2 0.7 2.4E-05 36.7 3.7 33 4-38 31-68 (245)
325 2fv8_A H6, RHO-related GTP-bin 85.1 1.5 5.2E-05 33.4 5.6 64 106-172 72-141 (207)
326 1upt_A ARL1, ADP-ribosylation 85.1 3.4 0.00012 29.8 7.4 65 105-172 49-120 (171)
327 3crm_A TRNA delta(2)-isopenten 85.0 0.51 1.7E-05 39.5 2.8 31 2-39 9-39 (323)
328 1kao_A RAP2A; GTP-binding prot 85.0 2.4 8.3E-05 30.4 6.4 64 106-172 50-120 (167)
329 3cb4_D GTP-binding protein LEP 84.9 1.1 3.7E-05 40.8 5.2 65 105-172 69-135 (599)
330 1knq_A Gluconate kinase; ALFA/ 84.9 0.64 2.2E-05 34.6 3.2 30 3-39 13-42 (175)
331 1zd9_A ADP-ribosylation factor 84.9 2.3 7.9E-05 31.7 6.4 65 105-172 65-136 (188)
332 2vli_A Antibiotic resistance p 84.9 0.21 7.1E-06 37.5 0.4 21 2-22 9-29 (183)
333 4ehx_A Tetraacyldisaccharide 4 84.8 0.6 2.1E-05 38.9 3.2 31 6-40 46-76 (315)
334 3aez_A Pantothenate kinase; tr 84.8 0.92 3.1E-05 37.7 4.3 37 3-39 95-131 (312)
335 3dl0_A Adenylate kinase; phosp 84.7 0.33 1.1E-05 37.6 1.5 21 2-22 4-24 (216)
336 1jwy_B Dynamin A GTPase domain 84.6 1.3 4.3E-05 36.4 5.1 65 106-173 130-211 (315)
337 2qpt_A EH domain-containing pr 84.6 0.98 3.4E-05 40.7 4.7 62 108-172 155-230 (550)
338 1qvr_A CLPB protein; coiled co 84.6 0.7 2.4E-05 44.0 3.9 35 2-38 195-236 (854)
339 3iby_A Ferrous iron transport 84.6 2.5 8.5E-05 33.9 6.7 64 105-171 46-121 (256)
340 3asz_A Uridine kinase; cytidin 84.5 0.66 2.2E-05 35.7 3.2 31 4-39 12-42 (211)
341 2qor_A Guanylate kinase; phosp 84.4 0.4 1.4E-05 36.9 1.9 21 2-22 16-36 (204)
342 2gco_A H9, RHO-related GTP-bin 84.4 1.5 5E-05 33.3 5.1 65 105-172 71-141 (201)
343 1ak2_A Adenylate kinase isoenz 84.1 0.49 1.7E-05 37.2 2.3 21 2-22 20-40 (233)
344 1zak_A Adenylate kinase; ATP:A 84.0 0.4 1.4E-05 37.4 1.7 21 2-22 9-29 (222)
345 4dsu_A GTPase KRAS, isoform 2B 84.0 4.8 0.00016 29.6 7.9 64 106-172 51-121 (189)
346 1ksh_A ARF-like protein 2; sma 84.0 2.7 9.2E-05 31.1 6.4 66 105-172 60-131 (186)
347 1ukz_A Uridylate kinase; trans 83.9 0.38 1.3E-05 36.8 1.5 29 2-37 19-47 (203)
348 1zd8_A GTP:AMP phosphotransfer 83.9 0.32 1.1E-05 38.2 1.1 21 2-22 11-31 (227)
349 1ex7_A Guanylate kinase; subst 83.8 0.5 1.7E-05 36.1 2.1 21 1-21 4-24 (186)
350 2f6r_A COA synthase, bifunctio 83.6 0.5 1.7E-05 38.6 2.2 28 3-38 80-107 (281)
351 4eun_A Thermoresistant glucoki 83.6 0.79 2.7E-05 35.0 3.2 29 3-38 34-62 (200)
352 1vt4_I APAF-1 related killer D 83.6 1 3.6E-05 43.9 4.6 36 2-39 154-192 (1221)
353 2eyu_A Twitching motility prot 83.5 1.1 3.9E-05 36.1 4.2 33 3-37 30-63 (261)
354 1bif_A 6-phosphofructo-2-kinas 83.3 0.75 2.6E-05 40.5 3.4 35 2-38 43-77 (469)
355 3u61_B DNA polymerase accessor 83.1 0.75 2.6E-05 38.0 3.2 32 2-38 52-83 (324)
356 3d8b_A Fidgetin-like protein 1 83.1 0.82 2.8E-05 38.6 3.4 30 3-37 122-151 (357)
357 2qp9_X Vacuolar protein sortin 83.0 0.95 3.3E-05 38.2 3.8 30 3-37 89-118 (355)
358 3tqf_A HPR(Ser) kinase; transf 83.0 0.62 2.1E-05 35.3 2.3 19 2-20 20-38 (181)
359 3b9p_A CG5977-PA, isoform A; A 83.0 0.8 2.7E-05 37.3 3.2 31 2-37 58-88 (297)
360 3eie_A Vacuolar protein sortin 83.0 0.95 3.2E-05 37.6 3.7 31 2-37 55-85 (322)
361 3pqc_A Probable GTP-binding pr 82.9 2.5 8.6E-05 31.4 5.9 66 106-172 67-145 (195)
362 3hws_A ATP-dependent CLP prote 82.9 0.74 2.5E-05 38.9 3.1 30 3-37 56-85 (363)
363 3pxg_A Negative regulator of g 82.9 0.46 1.6E-05 41.9 1.8 36 2-37 205-245 (468)
364 2r62_A Cell division protease 82.8 0.77 2.6E-05 36.8 3.0 21 2-22 48-68 (268)
365 1sxj_B Activator 1 37 kDa subu 82.6 0.38 1.3E-05 39.6 1.1 35 2-36 46-80 (323)
366 1iqp_A RFCS; clamp loader, ext 82.6 0.35 1.2E-05 39.9 0.9 35 2-36 50-84 (327)
367 3tlx_A Adenylate kinase 2; str 82.5 0.62 2.1E-05 37.1 2.3 21 2-22 33-53 (243)
368 3cr8_A Sulfate adenylyltranfer 82.5 0.48 1.6E-05 42.7 1.8 35 3-38 374-408 (552)
369 1xwi_A SKD1 protein; VPS4B, AA 82.3 0.87 3E-05 37.9 3.2 31 3-37 50-80 (322)
370 1ltq_A Polynucleotide kinase; 82.3 0.52 1.8E-05 38.6 1.8 30 2-37 6-35 (301)
371 3pxi_A Negative regulator of g 82.2 0.96 3.3E-05 42.4 3.8 36 3-40 526-561 (758)
372 3q72_A GTP-binding protein RAD 82.2 4.1 0.00014 29.3 6.7 65 105-172 47-118 (166)
373 2hup_A RAS-related protein RAB 82.0 3.5 0.00012 31.2 6.5 65 106-172 77-146 (201)
374 2iwr_A Centaurin gamma 1; ANK 82.0 5.5 0.00019 29.1 7.4 62 106-172 53-120 (178)
375 1kgd_A CASK, peripheral plasma 82.0 0.64 2.2E-05 35.0 2.1 21 2-22 9-29 (180)
376 2yc2_C IFT27, small RAB-relate 81.9 2.6 9E-05 31.7 5.7 65 106-172 72-144 (208)
377 2bov_A RAla, RAS-related prote 81.9 4.3 0.00015 30.5 6.9 65 105-172 60-131 (206)
378 1uf9_A TT1252 protein; P-loop, 81.9 0.56 1.9E-05 35.7 1.8 28 3-38 13-40 (203)
379 2gk6_A Regulator of nonsense t 81.8 0.98 3.4E-05 41.3 3.6 32 2-35 199-231 (624)
380 2grj_A Dephospho-COA kinase; T 81.6 0.74 2.5E-05 35.3 2.3 30 3-39 17-46 (192)
381 3t5g_A GTP-binding protein RHE 81.5 3.1 0.00011 30.6 5.9 65 105-172 52-123 (181)
382 3cf0_A Transitional endoplasmi 81.5 0.88 3E-05 37.4 2.9 29 3-36 54-82 (301)
383 2fu5_C RAS-related protein RAB 81.4 2.7 9.3E-05 31.0 5.5 64 106-172 56-125 (183)
384 3qq5_A Small GTP-binding prote 81.3 4.7 0.00016 34.9 7.6 61 108-173 84-153 (423)
385 2r2a_A Uncharacterized protein 81.0 0.93 3.2E-05 35.0 2.7 22 2-23 9-30 (199)
386 1cke_A CK, MSSA, protein (cyti 80.9 0.93 3.2E-05 35.2 2.8 20 3-22 10-29 (227)
387 3ake_A Cytidylate kinase; CMP 80.8 0.77 2.6E-05 35.0 2.2 29 3-38 7-35 (208)
388 1e9r_A Conjugal transfer prote 80.7 1.2 4.1E-05 38.6 3.7 33 3-37 58-90 (437)
389 2aka_B Dynamin-1; fusion prote 80.1 2 6.9E-05 34.8 4.7 64 106-172 124-204 (299)
390 1svi_A GTP-binding protein YSX 80.1 3 0.0001 31.1 5.4 64 107-172 69-146 (195)
391 1tue_A Replication protein E1; 80.0 0.71 2.4E-05 36.0 1.7 21 2-22 62-82 (212)
392 2a5j_A RAS-related protein RAB 79.8 3.7 0.00013 30.6 5.8 64 106-172 69-138 (191)
393 3pfi_A Holliday junction ATP-d 79.8 1.2 4E-05 37.0 3.2 33 2-39 59-91 (338)
394 2gf0_A GTP-binding protein DI- 79.7 2.5 8.7E-05 31.6 4.9 65 105-172 54-126 (199)
395 3l0i_B RAS-related protein RAB 79.6 2.1 7.1E-05 32.3 4.4 65 106-172 81-150 (199)
396 2fn4_A P23, RAS-related protei 79.6 5.4 0.00018 29.0 6.6 64 106-172 56-126 (181)
397 1m2o_B GTP-binding protein SAR 79.6 7 0.00024 29.1 7.4 65 105-172 65-136 (190)
398 3exa_A TRNA delta(2)-isopenten 79.4 1.2 4E-05 37.2 3.0 31 2-39 7-37 (322)
399 1p6x_A Thymidine kinase; P-loo 79.4 0.76 2.6E-05 38.6 1.8 23 4-26 13-35 (334)
400 2bbw_A Adenylate kinase 4, AK4 79.3 0.93 3.2E-05 35.9 2.3 20 3-22 32-51 (246)
401 1f6b_A SAR1; gtpases, N-termin 79.2 8.1 0.00028 29.0 7.7 65 105-172 67-138 (198)
402 1mh1_A RAC1; GTP-binding, GTPa 79.2 3.3 0.00011 30.5 5.3 64 105-171 51-120 (186)
403 2wjy_A Regulator of nonsense t 79.1 1.3 4.6E-05 41.7 3.6 32 2-35 375-407 (800)
404 2qmh_A HPR kinase/phosphorylas 79.1 0.67 2.3E-05 36.0 1.3 19 2-20 38-56 (205)
405 3a1s_A Iron(II) transport prot 79.0 5.3 0.00018 31.9 6.7 65 105-172 50-122 (258)
406 2oil_A CATX-8, RAS-related pro 78.9 4.4 0.00015 30.2 6.0 66 105-172 72-142 (193)
407 3bwd_D RAC-like GTP-binding pr 78.9 4.4 0.00015 29.6 6.0 64 105-171 54-123 (182)
408 3ice_A Transcription terminati 78.9 2.2 7.5E-05 36.7 4.5 35 6-40 182-216 (422)
409 3foz_A TRNA delta(2)-isopenten 78.9 0.74 2.5E-05 38.3 1.6 31 2-39 14-44 (316)
410 3cpj_B GTP-binding protein YPT 78.9 4 0.00014 31.4 5.9 65 106-172 61-130 (223)
411 3tau_A Guanylate kinase, GMP k 78.8 0.88 3E-05 35.1 2.0 21 2-22 12-32 (208)
412 1qvr_A CLPB protein; coiled co 78.7 1.1 3.8E-05 42.6 3.0 37 2-40 592-628 (854)
413 1e2k_A Thymidine kinase; trans 78.6 0.57 2E-05 39.3 0.9 23 4-26 10-32 (331)
414 2x77_A ADP-ribosylation factor 78.5 4 0.00014 30.3 5.7 66 105-172 64-135 (189)
415 1sxj_C Activator 1 40 kDa subu 78.4 0.77 2.6E-05 38.4 1.6 35 2-38 50-84 (340)
416 4djt_A GTP-binding nuclear pro 78.3 1.9 6.5E-05 33.0 3.8 63 107-172 61-129 (218)
417 2bdt_A BH3686; alpha-beta prot 78.2 1.1 3.7E-05 33.8 2.3 19 2-20 6-24 (189)
418 2q3h_A RAS homolog gene family 77.8 3.7 0.00013 30.8 5.3 64 106-172 67-136 (201)
419 2j41_A Guanylate kinase; GMP, 77.7 0.97 3.3E-05 34.4 1.9 20 3-22 11-30 (207)
420 1vht_A Dephospho-COA kinase; s 77.7 1.4 4.9E-05 34.0 2.9 28 2-37 8-35 (218)
421 2dby_A GTP-binding protein; GD 77.6 21 0.00071 30.2 10.3 35 106-142 68-111 (368)
422 1jbw_A Folylpolyglutamate synt 77.5 1.4 4.8E-05 38.2 3.1 30 3-34 42-71 (428)
423 2j0v_A RAC-like GTP-binding pr 77.5 3.7 0.00013 31.2 5.3 65 105-172 55-125 (212)
424 2i3b_A HCR-ntpase, human cance 77.5 1.6 5.6E-05 33.2 3.1 23 4-26 7-29 (189)
425 2c9o_A RUVB-like 1; hexameric 77.4 1.6 5.3E-05 38.3 3.3 22 2-23 67-88 (456)
426 1of1_A Thymidine kinase; trans 77.4 0.79 2.7E-05 39.1 1.4 23 4-26 55-77 (376)
427 3r7w_A Gtpase1, GTP-binding pr 77.4 3.9 0.00013 33.6 5.7 65 105-172 50-127 (307)
428 3bs4_A Uncharacterized protein 77.3 1.8 6.1E-05 35.0 3.4 36 4-41 27-62 (260)
429 3dz8_A RAS-related protein RAB 77.2 1.7 5.7E-05 32.6 3.1 65 105-172 70-140 (191)
430 2npi_A Protein CLP1; CLP1-PCF1 77.2 1 3.4E-05 39.7 2.0 34 5-40 145-179 (460)
431 3sfz_A APAF-1, apoptotic pepti 77.2 0.9 3.1E-05 44.6 1.9 37 3-39 152-190 (1249)
432 1ye8_A Protein THEP1, hypothet 77.2 1.5 5.1E-05 33.1 2.8 21 3-23 5-25 (178)
433 3gj0_A GTP-binding nuclear pro 77.2 3.6 0.00012 31.5 5.2 66 105-173 62-132 (221)
434 1fzq_A ADP-ribosylation factor 77.1 11 0.00037 27.7 7.8 65 105-172 58-129 (181)
435 1in4_A RUVB, holliday junction 77.1 1.1 3.7E-05 37.5 2.2 21 2-22 55-75 (334)
436 3ney_A 55 kDa erythrocyte memb 77.1 1.1 3.9E-05 34.5 2.1 21 2-22 23-43 (197)
437 4gzl_A RAS-related C3 botulinu 77.1 3.1 0.00011 31.6 4.7 64 105-171 76-145 (204)
438 1w78_A FOLC bifunctional prote 76.8 1.5 5.1E-05 37.9 3.1 30 3-34 52-81 (422)
439 3nwj_A ATSK2; P loop, shikimat 76.8 1.2 4.1E-05 35.7 2.2 30 2-38 52-81 (250)
440 1jr3_A DNA polymerase III subu 76.7 1.2 3.9E-05 37.5 2.2 23 2-24 42-64 (373)
441 2y8e_A RAB-protein 6, GH09086P 76.6 3.7 0.00013 29.9 4.9 64 106-172 62-131 (179)
442 1sxj_D Activator 1 41 kDa subu 76.5 1.9 6.6E-05 35.8 3.6 35 2-36 62-97 (353)
443 1p9r_A General secretion pathw 76.4 1.6 5.6E-05 37.8 3.2 33 3-37 172-204 (418)
444 3uk6_A RUVB-like 2; hexameric 76.2 1 3.4E-05 37.9 1.7 31 2-35 74-104 (368)
445 1osn_A Thymidine kinase, VZV-T 76.1 0.6 2E-05 39.4 0.3 33 3-39 17-50 (341)
446 2zan_A Vacuolar protein sortin 76.0 1.6 5.4E-05 38.1 3.0 32 2-37 171-202 (444)
447 1moz_A ARL1, ADP-ribosylation 75.8 4.6 0.00016 29.6 5.3 66 105-172 60-131 (183)
448 3r20_A Cytidylate kinase; stru 75.7 1.4 4.7E-05 35.0 2.3 20 3-22 14-33 (233)
449 3eag_A UDP-N-acetylmuramate:L- 75.7 1.4 4.7E-05 36.7 2.4 28 3-32 111-138 (326)
450 1rif_A DAR protein, DNA helica 75.6 3.1 0.00011 33.5 4.5 31 3-34 133-163 (282)
451 2ocp_A DGK, deoxyguanosine kin 75.6 0.96 3.3E-05 35.7 1.4 20 3-22 7-26 (241)
452 2qen_A Walker-type ATPase; unk 75.3 1.3 4.3E-05 36.7 2.1 30 2-38 35-64 (350)
453 4akg_A Glutathione S-transfera 75.2 4 0.00014 43.7 6.1 45 4-50 929-974 (2695)
454 3cbq_A GTP-binding protein REM 75.2 11 0.00037 28.2 7.3 65 105-172 70-142 (195)
455 2xzl_A ATP-dependent helicase 74.8 2.1 7E-05 40.5 3.6 33 2-36 379-412 (802)
456 3vfd_A Spastin; ATPase, microt 74.7 2.1 7.3E-05 36.4 3.4 32 2-38 152-183 (389)
457 1ixz_A ATP-dependent metallopr 74.7 1.2 4.2E-05 35.3 1.8 20 3-22 54-73 (254)
458 1lvg_A Guanylate kinase, GMP k 74.6 1.5 5.3E-05 33.4 2.3 21 3-23 9-29 (198)
459 1nij_A Hypothetical protein YJ 74.5 0.87 3E-05 37.9 0.9 34 2-39 8-41 (318)
460 3a00_A Guanylate kinase, GMP k 74.4 1.1 3.7E-05 33.8 1.4 21 3-23 6-26 (186)
461 1jjv_A Dephospho-COA kinase; P 74.4 1.4 4.9E-05 33.6 2.1 28 3-38 7-34 (206)
462 1htw_A HI0065; nucleotide-bind 74.3 1.4 4.6E-05 32.6 1.8 18 5-22 40-57 (158)
463 3c5c_A RAS-like protein 12; GD 74.2 7.1 0.00024 29.0 6.0 65 105-172 67-139 (187)
464 1o5z_A Folylpolyglutamate synt 73.9 1.9 6.5E-05 37.6 3.0 30 3-34 55-84 (442)
465 2x2e_A Dynamin-1; nitration, h 73.9 2.2 7.6E-05 35.9 3.3 64 106-172 129-209 (353)
466 2r44_A Uncharacterized protein 73.9 1.8 6E-05 35.9 2.6 33 2-39 50-82 (331)
467 2ce2_X GTPase HRAS; signaling 73.6 1.2 4.1E-05 32.0 1.4 16 4-19 9-24 (166)
468 3con_A GTPase NRAS; structural 73.5 1.5 5E-05 32.8 1.9 18 3-20 26-43 (190)
469 3b1v_A Ferrous iron uptake tra 73.4 18 0.00063 29.0 8.6 64 106-172 48-119 (272)
470 3tr0_A Guanylate kinase, GMP k 73.2 1.6 5.6E-05 33.1 2.1 20 3-22 12-31 (205)
471 1xzp_A Probable tRNA modificat 73.1 8 0.00027 34.1 6.8 62 105-172 289-362 (482)
472 3hu3_A Transitional endoplasmi 72.9 2.1 7.2E-05 37.9 3.0 31 2-37 242-272 (489)
473 4b4t_K 26S protease regulatory 72.9 3.1 0.00011 36.2 4.0 31 3-38 211-241 (428)
474 2chq_A Replication factor C sm 72.9 1.6 5.5E-05 35.6 2.1 36 2-37 42-77 (319)
475 3nrs_A Dihydrofolate:folylpoly 72.9 2.2 7.4E-05 37.2 3.1 30 3-34 55-84 (437)
476 1w4r_A Thymidine kinase; type 72.7 3.1 0.00011 31.9 3.6 33 3-37 25-57 (195)
477 1s96_A Guanylate kinase, GMP k 72.6 1.4 4.8E-05 34.5 1.6 21 2-22 20-40 (219)
478 1jal_A YCHF protein; nucleotid 72.3 15 0.00051 31.0 8.0 35 106-142 65-108 (363)
479 1g41_A Heat shock protein HSLU 72.2 2.5 8.6E-05 36.9 3.2 29 4-37 56-84 (444)
480 1m7b_A RND3/RHOE small GTP-bin 72.2 5 0.00017 29.7 4.7 65 105-172 53-123 (184)
481 1e8c_A UDP-N-acetylmuramoylala 72.1 2.2 7.6E-05 37.8 3.0 30 3-34 111-140 (498)
482 2qu8_A Putative nucleolar GTP- 71.9 9.9 0.00034 29.2 6.5 65 105-172 74-154 (228)
483 3t34_A Dynamin-related protein 71.9 5.9 0.0002 33.2 5.5 65 106-173 135-216 (360)
484 3q3j_B RHO-related GTP-binding 71.5 5.3 0.00018 30.6 4.8 65 105-172 73-143 (214)
485 3lk7_A UDP-N-acetylmuramoylala 71.3 2.5 8.5E-05 36.9 3.1 28 4-33 116-143 (451)
486 3h1t_A Type I site-specific re 71.2 3.3 0.00011 37.3 4.0 30 5-34 205-241 (590)
487 4e22_A Cytidylate kinase; P-lo 71.2 1.7 5.6E-05 34.7 1.8 20 3-22 32-51 (252)
488 3eph_A TRNA isopentenyltransfe 70.9 1.6 5.6E-05 37.6 1.7 31 2-39 6-36 (409)
489 3lvq_E ARF-GAP with SH3 domain 70.9 16 0.00055 32.0 8.3 65 105-172 364-435 (497)
490 1sxj_E Activator 1 40 kDa subu 70.8 1.6 5.6E-05 36.3 1.7 23 2-24 40-62 (354)
491 1iy2_A ATP-dependent metallopr 70.6 1.7 5.9E-05 35.0 1.8 20 3-22 78-97 (278)
492 2f7s_A C25KG, RAS-related prot 70.4 3 0.0001 31.8 3.1 65 106-172 83-153 (217)
493 1gwn_A RHO-related GTP-binding 70.4 5.6 0.00019 30.2 4.7 66 105-172 74-144 (205)
494 3reg_A RHO-like small GTPase; 70.2 6.4 0.00022 29.3 4.9 66 105-172 69-139 (194)
495 2wji_A Ferrous iron transport 70.1 2.2 7.7E-05 31.1 2.2 15 5-19 10-24 (165)
496 2wtz_A UDP-N-acetylmuramoyl-L- 70.0 2.6 9E-05 37.7 3.0 30 3-34 149-178 (535)
497 1lnz_A SPO0B-associated GTP-bi 69.8 5.2 0.00018 33.6 4.6 63 107-172 206-286 (342)
498 3pxi_A Negative regulator of g 69.8 1.7 5.8E-05 40.7 1.8 22 2-23 205-226 (758)
499 1u0l_A Probable GTPase ENGC; p 69.7 7.3 0.00025 31.9 5.5 62 108-172 64-127 (301)
500 2ga8_A Hypothetical 39.9 kDa p 69.7 2.2 7.6E-05 36.1 2.3 22 3-24 29-50 (359)
No 1
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=100.00 E-value=2.8e-33 Score=232.73 Aligned_cols=218 Identities=33% Similarity=0.584 Sum_probs=160.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccc--cccCceeecCCCCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPL--VNYGVKCLSMGNLI 78 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 78 (261)
+|+|+|||+||||+|+|||.+||++| +|||+||+|+|++++..+++......+.....+.+. ..++++++|++...
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~~G--~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~vlp~~~~~ 99 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYARQG--KKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGIKVMSMQFLL 99 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCCEEECGGGGS
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCeEEEeccccC
Confidence 47899999999999999999999999 999999999999888888888754322222222222 45688999987654
Q ss_pred ccch-hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHh
Q psy14655 79 TEKS-AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKK 157 (261)
Q Consensus 79 ~~~~-~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 157 (261)
.... ...+........++++++.++.++||||||||||+.+...........+|.+|+|+.|+..++.++.++++.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~ 179 (262)
T 2ph1_A 100 PKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEE 179 (262)
T ss_dssp TTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHT
T ss_pred CCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHh
Confidence 3211 111122334566778887775468999999999999865443333223999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCCCCCCccccccc-chhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCC
Q psy14655 158 LNIPVAGLVMNMNSVLCPSCNHMFELYE-NNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGN 236 (261)
Q Consensus 158 ~~~~~~giv~N~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~ 236 (261)
.+.+.+|+|+|+++..++.+..+..++. .....+.+ .+|.+++. .|| ++..+.+|...|+
T Consensus 180 ~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~-~Ip--------~~~~~~~a~~~g~ 240 (262)
T 2ph1_A 180 TNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAK----------KYNIGFFT-SIP--------IEEELIKLADSGR 240 (262)
T ss_dssp TTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHH----------HTTCSEEE-ECC--------BCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCccCCcccccccccccccHHHHHHH----------HcCCCeEE-Eee--------CchHHHHhccCCc
Confidence 8999999999998876665555555543 22223222 25666555 699 8889999999999
Q ss_pred cch
Q psy14655 237 TVH 239 (261)
Q Consensus 237 ~v~ 239 (261)
|++
T Consensus 241 ~~~ 243 (262)
T 2ph1_A 241 IEE 243 (262)
T ss_dssp GGG
T ss_pred eee
Confidence 986
No 2
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.97 E-value=7.1e-32 Score=223.60 Aligned_cols=209 Identities=20% Similarity=0.278 Sum_probs=149.2
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC-------CcCCccccccccCceeec
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL-------NKDNLMIPLVNYGVKCLS 73 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~ 73 (261)
+|+|+|||+||||+|+|||.+||++| +|||+||+|+|+ ++..+++.+...++ ...+.+.+ .++++++|
T Consensus 10 ~v~s~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l~vlp 84 (257)
T 1wcv_1 10 ALANQKGGVGKTTTAINLAAYLARLG--KRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGFHLLP 84 (257)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHTT--CCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTEEEEC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC--CCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCEEEEe
Confidence 47899999999999999999999999 999999999996 56778887653322 11122222 56899999
Q ss_pred CCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q psy14655 74 MGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT 153 (261)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~ 153 (261)
++.............. ..+.+.++. .+||||||||||+.+.....++.. ||.+|+|+.|+..++.++.++++
T Consensus 85 ~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~l~~--aD~viiv~~~~~~s~~~~~~~~~ 156 (257)
T 1wcv_1 85 ATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNALAA--AEGVVVPVQAEYYALEGVAGLLA 156 (257)
T ss_dssp CCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHHHHH--CSEEEEEEESSTHHHHHHHHHHH
T ss_pred CChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHHHHH--CCeEEEEecCchHHHHHHHHHHH
Confidence 8765432111111100 334554443 589999999999998887777776 99999999999999999988887
Q ss_pred HHHh------CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccc
Q psy14655 154 MFKK------LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVA 227 (261)
Q Consensus 154 ~l~~------~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~ 227 (261)
.++. .+.+.+|+|+|+++. +... .... .+...+.+|.+++.+.|| ++..
T Consensus 157 ~l~~~~~~~~~~~~~~gvv~N~~~~-------~~~~----~~~~------~~~l~~~~~~~~~~~~Ip--------~~~~ 211 (257)
T 1wcv_1 157 TLEEVRAGLNPRLRLLGILVTMYDG-------RTLL----AQQV------EAQLRAHFGEKVFWTVIP--------RNVR 211 (257)
T ss_dssp HHHHHHHHTCTTCEEEEEEEESBCT-------TCSH----HHHH------HHHHHHHHGGGBCSCCCB--------CCHH
T ss_pred HHHHHHHHhCCCceEEEEEEEeECC-------CcHH----HHHH------HHHHHHHccccccCccCC--------CcHH
Confidence 7764 245667999999542 1111 1111 112234467777777899 8889
Q ss_pred cCCCCCCCCcchhhhhhhhc
Q psy14655 228 YGNSHGHGNTVHHHHVLNLI 247 (261)
Q Consensus 228 ~~~a~~~g~~v~~~~~~~~~ 247 (261)
+.+|...|+|++++.+.+.+
T Consensus 212 ~~~a~~~g~~v~~~~~~~~~ 231 (257)
T 1wcv_1 212 LAEAPSFGKTIAQHAPTSPG 231 (257)
T ss_dssp HHHHHHHTCCHHHHCTTSHH
T ss_pred HHHHHHcCCCHHHhCCCChH
Confidence 99999999999987665443
No 3
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.97 E-value=7.2e-32 Score=221.64 Aligned_cols=210 Identities=16% Similarity=0.174 Sum_probs=157.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcccccC-CCCCCCCCc--------C----Cccccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGPSIPILMN-LPDTPLLNK--------D----NLMIPLVN 66 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~~~~~~~~-~~~~~~~~~--------~----~~~~~~~~ 66 (261)
+|+|+|||+||||+|+|||.+||++ | +|||+||+|+|.+++..+|+ .+...++.+ . ..+.....
T Consensus 8 ~v~s~kGGvGKTt~a~~LA~~la~~~g--~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (245)
T 3ea0_A 8 GFVSAKGGDGGSCIAANFAFALSQEPD--IHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQHIS 85 (245)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTTSTT--CCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSEEEE
T ss_pred EEECCCCCcchHHHHHHHHHHHHhCcC--CCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhEecC
Confidence 4789999999999999999999998 9 99999999999778888884 443332211 0 01122335
Q ss_pred cCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 67 YGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
++++++|.+........ .....+.++++.++ ++||||||||||+.+.....++.. ||.+++|+.|+..++.
T Consensus 86 ~~l~~l~~~~~~~~~~~------~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~--ad~viiv~~~~~~~~~ 156 (245)
T 3ea0_A 86 PSLDLIPSPATFEKIVN------IEPERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWVLEH--LDELCIVTTPSLQSLR 156 (245)
T ss_dssp TTEEEECCCSSHHHHHH------CCHHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHHGGG--CSEEEEEECSSHHHHH
T ss_pred CCeEEEcCCCChHhhhc------CCHHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHHHHH--CCEEEEEecCcHHHHH
Confidence 78999998665432211 12346888888888 899999999999998888778777 9999999999999999
Q ss_pred HHHHHHHHHHhCC--CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 147 VAQRGYTMFKKLN--IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 147 ~~~~~~~~l~~~~--~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
.+.++++.++..+ ...+++|+||++.. .... .+ ...+.+|.+++.+ || +
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~v~N~~~~~-------~~~~---~~----------~~~~~~~~~v~~~-ip--------~ 207 (245)
T 3ea0_A 157 RAGQLLKLCKEFEKPISRIEIILNRADTN-------SRIT---SD----------EIEKVIGRPISKR-IP--------Q 207 (245)
T ss_dssp HHHHHHHHHHTCSSCCSCEEEEEESTTSC-------TTSC---HH----------HHHHHHTSCEEEE-EC--------C
T ss_pred HHHHHHHHHHHhCCCccceEEEEecCCCC-------CCCC---HH----------HHHHHhCCCeEEE-CC--------C
Confidence 9999999999876 56799999996531 1111 11 1233467777765 66 5
Q ss_pred c-cccCCCCCCCCcchhhhhhhhcccc
Q psy14655 225 N-VAYGNSHGHGNTVHHHHVLNLIGEE 250 (261)
Q Consensus 225 ~-~~~~~a~~~g~~v~~~~~~~~~~~~ 250 (261)
+ ..+.+|...|+|++++.+.+.++..
T Consensus 208 ~~~~~~~a~~~g~~v~~~~~~s~~~~~ 234 (245)
T 3ea0_A 208 DEDAMQESLLSGQSVLKVAPKSQLSKT 234 (245)
T ss_dssp CHHHHHHHHHHTSCHHHHCTTSHHHHH
T ss_pred ChHHHHHHHHcCCCccccCCCCHHHHH
Confidence 5 5888999999999988766555444
No 4
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.97 E-value=5.4e-31 Score=217.03 Aligned_cols=201 Identities=17% Similarity=0.137 Sum_probs=147.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCC--CC----cCCccc---------------
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPL--LN----KDNLMI--------------- 62 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~--~~----~~~~~~--------------- 62 (261)
|+|||+||||+|+|||..||++| +|||+||+|+| ++++.+|+...... +. ..+.+.
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPKV 82 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCCC
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCch
Confidence 88999999999999999999999 99999999998 68888898764321 00 000000
Q ss_pred -------cccccCcee-ecCCCCcccchhhhhhchHHHHHHHHHHHHh-ccCCCCEEEEeCCCCCChhHHHHhhhcCCCe
Q psy14655 63 -------PLVNYGVKC-LSMGNLITEKSAAIWRGLMVMQALNKLTVQV-QWGPCDILFIDTPPGTGDTHLSLIQNLFIDT 133 (261)
Q Consensus 63 -------~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~ 133 (261)
.....++++ ++.+.......... ......++++++.+ + ++||||||||||+.+.....++.. ||.
T Consensus 83 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~~~~~~l~~--aD~ 156 (254)
T 3kjh_A 83 DGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY---CRENSFLGSVVSALFL-DKKEAVVMDMGAGIEHLTRGTAKA--VDM 156 (254)
T ss_dssp TTSGGGSSEESSSSEEEEECCCCCCCCSSCC---HHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTTCCHHHHTT--CSE
T ss_pred hccHHhcccccCCeEEEEEecccccCCCCCC---cchHHHHHHHHHHhcc-CCCCEEEEeCCCcccHHHHHHHHH--CCE
Confidence 012234555 55444322211111 11224588888888 7 899999999999998877777776 999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccc
Q psy14655 134 AIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFL 213 (261)
Q Consensus 134 viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 213 (261)
+++|+.|+..++..+.++.+.+.+.+.+.+++|+|+++. . ...+ ...+.++...+.+.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~--------------~--~~~~------~~~~~~~~~~~~~~ 214 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN--------------I--KEEK------LIKKHLPEDKILGI 214 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC--------------H--HHHH------HHHHHSCGGGEEEE
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC--------------h--hHHH------HHHHHhcCCccccc
Confidence 999999999999999999998888888889999998441 0 1111 12233554555677
Q ss_pred cCcchhhhhhhccccCCCCCCCCcchhhhh
Q psy14655 214 IPLCNLIIKIRNVAYGNSHGHGNTVHHHHV 243 (261)
Q Consensus 214 ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~ 243 (261)
|| ++..+.+|...|++++++.+
T Consensus 215 Ip--------~~~~~~~a~~~g~~~~~~~~ 236 (254)
T 3kjh_A 215 IP--------YNELFIELSLKGEEIWQSTN 236 (254)
T ss_dssp EE--------CCHHHHSCSSSSCCTTSTTS
T ss_pred cc--------CcHHHHHHHhCCCccccCCc
Confidence 99 99999999999999998764
No 5
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.97 E-value=2.5e-30 Score=211.53 Aligned_cols=209 Identities=19% Similarity=0.197 Sum_probs=154.6
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC-CCCC--------cCCccccccccCcee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT-PLLN--------KDNLMIPLVNYGVKC 71 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~l~~ 71 (261)
+|+|+|||+||||+|+|||.+||++| +||++||+|+++++++.+|+.+.. .++. ..+.+.+...+++++
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~~ 83 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGDRG--RKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVYV 83 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEEE
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhcC--CeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEEE
Confidence 47899999999999999999999999 999999999988888888988764 2221 112222222378899
Q ss_pred ecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
+|..... ..... . ....+.++++.++ .+||||||||||+.+.....++.. +|.+++|+.|+..++.++.++
T Consensus 84 lp~~~~~-~~~~~--~---~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~~--ad~vi~v~~~~~~~~~~~~~~ 154 (237)
T 1g3q_A 84 LPGAVDW-EHVLK--A---DPRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSAMLS--GEEALLVTNPEISCLTDTMKV 154 (237)
T ss_dssp ECCCCSH-HHHHH--C---CGGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHHHTT--CSEEEEEECSCHHHHHHHHHH
T ss_pred EeCCCcc-chhhh--c---CHHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHHHHH--CCeEEEEecCCcccHHHHHHH
Confidence 9833221 11111 0 0345778888888 899999999999998877777776 999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNS 231 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a 231 (261)
++.+++.+.+.+++|+|+++.... . .....+ .+.+|.+++ ..|| ++..+.+|
T Consensus 155 ~~~l~~~~~~~~~vv~N~~~~~~~-------~--~~~~~~----------~~~~~~~~~-~~Ip--------~~~~~~~a 206 (237)
T 1g3q_A 155 GIVLKKAGLAILGFVLNRYGRSDR-------D--IPPEAA----------EDVMEVPLL-AVIP--------EDPAIREG 206 (237)
T ss_dssp HHHHHHTTCEEEEEEEEEETSCTT-------C--CCHHHH----------HHHHCSCEE-EEEE--------CCHHHHHH
T ss_pred HHHHHhCCCceEEEEEecCCcccc-------h--hHHHHH----------HHHhCccce-eeCC--------CChHHHHH
Confidence 999998888899999999653110 0 111111 122565554 4689 88889999
Q ss_pred CCCCCcchhhhhhhhcc
Q psy14655 232 HGHGNTVHHHHVLNLIG 248 (261)
Q Consensus 232 ~~~g~~v~~~~~~~~~~ 248 (261)
...|+|++++.+.+.++
T Consensus 207 ~~~g~~v~~~~~~~~~~ 223 (237)
T 1g3q_A 207 TLEGIPAVKYKPESKGA 223 (237)
T ss_dssp HHHTSCHHHHSTTSHHH
T ss_pred HHcCCCeEEeCCCCHHH
Confidence 99999999886554433
No 6
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.97 E-value=4.3e-30 Score=205.57 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=142.1
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|+|||+||||+|.|||..|+++| +||++||+|+|++ +..+++... .++++++.+.
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~-~~~~~~~~~---------------~~~~~~~~~~---- 62 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSRSG--YNIAVVDTDPQMS-LTNWSKAGK---------------AAFDVFTAAS---- 62 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCH-HHHHHTTSC---------------CSSEEEECCS----
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCC-HHHHHhcCC---------------CCCcEEecCc----
Confidence 47899999999999999999999999 9999999999975 455554322 2366666542
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC-
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN- 159 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~- 159 (261)
..+.+.++.++ ++||+|||||||+.+.....++.. +|.+++|+.|+..+ ..+.++++.+++.+
T Consensus 63 ------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~l~~--ad~viiv~~~~~~~-~~~~~~~~~l~~~~~ 126 (206)
T 4dzz_A 63 ------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAAVMV--SDLVIIPVTPSPLD-FSAAGSVVTVLEAQA 126 (206)
T ss_dssp ------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHHHHH--CSEEEEEECSCTTT-HHHHHHHHHHHTTSC
T ss_pred ------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHHHHH--CCEEEEEecCCHHH-HHHHHHHHHHHHHHH
Confidence 35778888888 889999999999998888888877 99999999999999 99999999998764
Q ss_pred ----CCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCC
Q psy14655 160 ----IPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHG 235 (261)
Q Consensus 160 ----~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g 235 (261)
.+ +++|+|+++. +..... . ..+..++ +|.+++.+.|| ++..+.+|...|
T Consensus 127 ~~~~~~-~~vv~N~~~~-------~~~~~~----~------~~~~l~~-~~~~vl~~~Ip--------~~~~~~~a~~~g 179 (206)
T 4dzz_A 127 YSRKVE-ARFLITRKIE-------MATMLN----V------LKESIKD-TGVKAFRTAIT--------QRQVYVKSILDG 179 (206)
T ss_dssp GGGCCE-EEEEECSBCT-------TEEEEH----H------HHHHHHH-HTCCBCSSCCB--------CCHHHHHHHHTT
T ss_pred hCCCCc-EEEEEeccCC-------CchHHH----H------HHHHHHH-cCCceeecccc--------ccHHHHHHHHcC
Confidence 33 5999999552 222211 1 1112222 57788878899 899999999999
Q ss_pred Ccchhhhhhhhccc
Q psy14655 236 NTVHHHHVLNLIGE 249 (261)
Q Consensus 236 ~~v~~~~~~~~~~~ 249 (261)
+|+++ .+.+.+..
T Consensus 180 ~~v~~-~~~s~~~~ 192 (206)
T 4dzz_A 180 DSVFE-SSDGAAKG 192 (206)
T ss_dssp CCGGG-SSCHHHHH
T ss_pred CCccc-CCchHHHH
Confidence 99998 65554443
No 7
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.96 E-value=1.8e-30 Score=215.13 Aligned_cols=208 Identities=17% Similarity=0.192 Sum_probs=153.2
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----------CCccc-cccccCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----------DNLMI-PLVNYGV 69 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~l 69 (261)
+|+|+|||+||||+|+|||.+||++| +||++||+|++++++..+++.+....... .+.+. ....+++
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 83 (260)
T 3q9l_A 6 VVTSGKGGVGKTTSSAAIATGLAQKG--KKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENL 83 (260)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSSTTE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCC--CcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCCCCE
Confidence 47899999999999999999999999 99999999997788899998865422111 11111 1234689
Q ss_pred eeecCCCCcccchhhhhhchHHHHHHHHHHHHhccC-CCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 70 KCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWG-PCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
+++|++..... .......+.++++.++ . +||||||||||+.+.....++.. ||.+++|+.|+..++..+
T Consensus 84 ~~lp~~~~~~~-------~~~~~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~l~~--ad~vi~v~~~~~~s~~~~ 153 (260)
T 3q9l_A 84 YILPASQTRDK-------DALTREGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMALYF--ADEAIITTNPEVSSVRDS 153 (260)
T ss_dssp EEECCCSCCCT-------TSSCHHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHHHHT--CSEEEEEECSSHHHHHHH
T ss_pred EEecCCCccch-------hhCCHHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHHHHh--CCEEEEEecCChhHHHHH
Confidence 99998765421 1122345788888888 7 99999999999999887777776 999999999999999999
Q ss_pred HHHHHHHHhCCC--------CeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhh
Q psy14655 149 QRGYTMFKKLNI--------PVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLI 220 (261)
Q Consensus 149 ~~~~~~l~~~~~--------~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~ 220 (261)
.++++.+...+. ..+++|+|+++. +.....+.. ..+...+.+|.+++ +.||
T Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~-------~~~~~~~~~--------~~~~~~~~~~~~~~-~~Ip----- 212 (260)
T 3q9l_A 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNP-------GRVSRGDML--------SMEDVLEILRIKLV-GVIP----- 212 (260)
T ss_dssp HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH-------HHHHTTSSC--------CHHHHHHHHCSEEE-EEEE-----
T ss_pred HHHHHHHHHhccccccccCCcceEEEEecCCc-------ccccccccc--------CHHHHHHHhCCceE-EecC-----
Confidence 999999986542 478999999442 111111100 00112333576666 5799
Q ss_pred hhhhccccCCCCCCCCcchhhhhhh
Q psy14655 221 IKIRNVAYGNSHGHGNTVHHHHVLN 245 (261)
Q Consensus 221 ~~~~~~~~~~a~~~g~~v~~~~~~~ 245 (261)
++..+.+|...|+|+++ .+.+
T Consensus 213 ---~~~~~~~a~~~g~~v~~-~~~s 233 (260)
T 3q9l_A 213 ---EDQSVLRASNQGEPVIL-DINA 233 (260)
T ss_dssp ---CCHHHHHHHHHTCCGGG-CTTC
T ss_pred ---CChhHHHHHHcCCCeEE-CCCC
Confidence 88889999999999987 4443
No 8
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.96 E-value=6.6e-30 Score=212.28 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=151.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC-CCCCc--------CCccccccccCcee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT-PLLNK--------DNLMIPLVNYGVKC 71 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~l~~ 71 (261)
+|+|+|||+||||+|+|||.+|+++| +||++||+|++.++++.+|+.+.. .++.+ .+.+.+ ...++++
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~l~~ 82 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLG--HDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGGVKV 82 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTT--CCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGGCEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCC--CcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCCeEE
Confidence 47899999999999999999999999 999999999987888888988764 22211 111212 2468899
Q ss_pred ecCCCCcccchhhhhhchHH-HHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 72 LSMGNLITEKSAAIWRGLMV-MQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
+|..... .... .. ...+.++++.++ .+|||||||+||+.+.....++.. +|.+|+|+.|+..++.++.+
T Consensus 83 lp~~~~~-~~~~------~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~~~~--ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 83 VPAGVSL-EGLR------KANPEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIAIAA--AQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp EECCSCH-HHHH------HHCHHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHHHHH--SSEEEEEECSSHHHHHHHHH
T ss_pred EcCCCCc-Chhh------ccChHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHHHHH--CCEEEEEeCCChhHHHHHHH
Confidence 9833221 1111 12 456788888888 899999999999999877777777 99999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGN 230 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~ 230 (261)
+++.+.+.+.+.+++|+|+++.. .... ..++. .+.+|.+++ ..|| ++..+.+
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~-------------~~~~-----~~~~~-~~~~~~~~~-~~Ip--------~~~~~~~ 204 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTL-------------GIEM-----AKNEI-EAILEAKVI-GLIP--------EDPEVRR 204 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTT-------------THHH-----HHHHH-HHHTTSCEE-EEEE--------CCHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCcc-------------cccc-----hHHHH-HHHhCCCeE-EECC--------CCHHHHH
Confidence 99999887888999999995421 1100 11111 223566655 4689 8888899
Q ss_pred CCCCCCcchhhh
Q psy14655 231 SHGHGNTVHHHH 242 (261)
Q Consensus 231 a~~~g~~v~~~~ 242 (261)
|...|++++++.
T Consensus 205 a~~~g~~v~~~~ 216 (263)
T 1hyq_A 205 AAAYGKPVVLRS 216 (263)
T ss_dssp HHHHTSCHHHHC
T ss_pred HHHcCCceEEcC
Confidence 999999998764
No 9
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.2e-29 Score=219.93 Aligned_cols=231 Identities=14% Similarity=0.132 Sum_probs=130.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC-------------------CCCC-----
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT-------------------PLLN----- 56 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~-------------------~~~~----- 56 (261)
+|+|+||||||||+|+|||..||+.| +|||+||+|+|++.+..+++.+.. .++.
T Consensus 5 av~s~KGGvGKTT~a~nLA~~LA~~G--~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l~~ 82 (361)
T 3pg5_A 5 SFFNNKGGVGKTTLSTNVAHYFALQG--KRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIFVP 82 (361)
T ss_dssp EBCCSSCCHHHHHHHHHHHHHHHHTT--CCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGGHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCC--CcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHHHH
Confidence 48899999999999999999999999 999999999998776655542110 1110
Q ss_pred -------cCC--ccccccccCceeecCCCCcccchhhhhhc-----------hHHHHHHHHHHHHhccC--CCCEEEEeC
Q psy14655 57 -------KDN--LMIPLVNYGVKCLSMGNLITEKSAAIWRG-----------LMVMQALNKLTVQVQWG--PCDILFIDT 114 (261)
Q Consensus 57 -------~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~l~~~--~yd~IiiD~ 114 (261)
..+ .+.....++++++|++............. ......++++++.++ + +||||||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~~~yD~VIID~ 161 (361)
T 3pg5_A 83 LREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAME-RDDRYDVIFFDV 161 (361)
T ss_dssp HHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHH-HTTCCSEEEEEC
T ss_pred HhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHh-hccCCCEEEEEC
Confidence 011 12233456999999887665433322110 011235788888887 5 999999999
Q ss_pred CCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC--------------------C---------------
Q psy14655 115 PPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL--------------------N--------------- 159 (261)
Q Consensus 115 ~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--------------------~--------------- 159 (261)
||+.+.....++.. ||.+|+|+.|+..++.++.++++.+.+. +
T Consensus 162 pP~l~~~~~~aL~~--aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (361)
T 3pg5_A 162 GPSLGPFNRTVLLG--CDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFDG 239 (361)
T ss_dssp CSCCSHHHHHHHTT--CSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSSS
T ss_pred CCCcCHHHHHHHHH--CCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccccccccc
Confidence 99999888888877 9999999999999999999888877643 1
Q ss_pred --CCeEEEEEcCCCCCCCCCC-cccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCC
Q psy14655 160 --IPVAGLVMNMNSVLCPSCN-HMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGN 236 (261)
Q Consensus 160 --~~~~giv~N~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~ 236 (261)
++++|+|+|+++....... .-...+..+..++... +. .+...+... ..|++-..++.....+..|+..|.
T Consensus 240 ~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~-~l~~~~~~~----~~~~~l~~i~~~~s~~~~aq~~~~ 312 (361)
T 3pg5_A 240 EGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAE--AE-RISNSLSKH----SNSTLLGHVPHMHSMPATAQDVHA 312 (361)
T ss_dssp SCCEEEEEEECC-----------------TTHHHHHHH--HH-HHHHHSCSS----CCCCEEEECC--------------
T ss_pred cccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHH--HH-hccccccCC----CCccccccCCchhhHHHHHHHHCC
Confidence 6789999999775321110 0012233333333322 11 111112111 122211122235667789999999
Q ss_pred cchhhhh
Q psy14655 237 TVHHHHV 243 (261)
Q Consensus 237 ~v~~~~~ 243 (261)
||++...
T Consensus 313 Pi~~l~~ 319 (361)
T 3pg5_A 313 PIMELSS 319 (361)
T ss_dssp -------
T ss_pred CeEECch
Confidence 9997764
No 10
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.96 E-value=1.3e-29 Score=214.36 Aligned_cols=210 Identities=16% Similarity=0.085 Sum_probs=147.9
Q ss_pred ccc--CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccc---cCCCC-CCCCC-------cCCccccccccC
Q psy14655 2 IAS--SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPIL---MNLPD-TPLLN-------KDNLMIPLVNYG 68 (261)
Q Consensus 2 v~s--~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~---~~~~~-~~~~~-------~~~~~~~~~~~~ 68 (261)
|+| +||||||||+|+|||..||++| +|||+||+|+|++...++ ++.+. ..++. ....+.+ ..++
T Consensus 39 v~~~s~KGGvGKTT~a~nLA~~la~~G--~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~ 115 (298)
T 2oze_A 39 ILNNYFKGGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH-LTDN 115 (298)
T ss_dssp EEECCSSSSSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE-SSSS
T ss_pred EEeccCCCCchHHHHHHHHHHHHHhCC--CeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc-cCCC
Confidence 455 8999999999999999999999 999999999998643222 33321 11110 0111112 2468
Q ss_pred ceeecCCCCcccchhhhh--hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 69 VKCLSMGNLITEKSAAIW--RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
++++|++........... ........+.++++.++ ++||||||||||+.+.....++.. ||.+++|+.|+..++.
T Consensus 116 l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~l~~--aD~viiv~~~~~~s~~ 192 (298)
T 2oze_A 116 LDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNAIVA--SDYVMIPLQAEEESTN 192 (298)
T ss_dssp EEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHHHHH--CSEEEEEECGGGCCHH
T ss_pred eEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHHHHH--CCeEEEEecCcHHHHH
Confidence 999998865542221111 01123355888888888 899999999999999887777776 9999999999999999
Q ss_pred HHHHHHHHHHh------CCCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcc--cccccccCcch
Q psy14655 147 VAQRGYTMFKK------LNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGI--HMWNFLIPLCN 218 (261)
Q Consensus 147 ~~~~~~~~l~~------~~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~ip~~~ 218 (261)
++.++++.+.. .+.+++|+|+||++. +..... . .+++. .+.+|. .++.+.||
T Consensus 193 ~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~-------~~~~~~----~-----~~~~~-~~~~~~~~~v~~~~Ip--- 252 (298)
T 2oze_A 193 NIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT-------DSATIK----S-----NLEEL-YKQHKEDNLVFQNIIK--- 252 (298)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT-------TCHHHH----H-----HHHHH-HHHTTTTCCBCSSCEE---
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC-------CcHHHH----H-----HHHHH-HHHhcccccccccccc---
Confidence 99998888765 367789999999553 111111 1 11111 223554 57778899
Q ss_pred hhhhhhccccCCCCCCCCcchh-hh
Q psy14655 219 LIIKIRNVAYGNSHGHGNTVHH-HH 242 (261)
Q Consensus 219 ~~~~~~~~~~~~a~~~g~~v~~-~~ 242 (261)
++..+.+|...|+|+++ ++
T Consensus 253 -----~~~~~~~a~~~G~~v~~~~~ 272 (298)
T 2oze_A 253 -----RSNKVSTWSKNGITEHKGYD 272 (298)
T ss_dssp -----CCHHHHHHHHHCCCSSSTTH
T ss_pred -----ccHHHHHHHHcCCChhhhcC
Confidence 99999999999999986 54
No 11
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.96 E-value=2.6e-29 Score=213.33 Aligned_cols=200 Identities=21% Similarity=0.217 Sum_probs=142.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------------CCcccccccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------------DNLMIPLVNY 67 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 67 (261)
|+ +||||||||+|+|||.+||++| +|||+||+|+|++. ..+++.....++.+ .+.+.+ ..+
T Consensus 46 v~-~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~~~-~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~-~~~ 120 (307)
T 3end_A 46 VY-GKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKHDS-TFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE-GFN 120 (307)
T ss_dssp EE-CSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSCCT-THHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE-CGG
T ss_pred EE-CCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCCCH-HHHhCccCCCCHHHHHhhccccccCCCHHHhhcc-CCC
Confidence 56 7999999999999999999999 99999999999754 45555443332211 112222 457
Q ss_pred CceeecCCCCcccchhhhhhchHHHHHHHHHHHH--hccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcch
Q psy14655 68 GVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQ--VQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMS 144 (261)
Q Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s 144 (261)
+++++|++........... .......+++. +. ++||||||||||+.+.. ...++.. ||.+++|+.|+..+
T Consensus 121 ~l~vlp~~~~~~~~~~~~~----~~~~~~~~l~~~~~~-~~yD~ViiD~p~~~~~~~~~~~l~~--aD~viiv~~~~~~s 193 (307)
T 3end_A 121 GVMCVEAGGPPAGTGCGGY----VVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVCGGFAAPLQH--ADQAVVVTANDFDS 193 (307)
T ss_dssp GCEEEECCCCCSSSSCTTH----HHHHHHHHHHHTTTT-SSCSEEEEEECCSSCCGGGGGGGGT--CSEEEEEECSSHHH
T ss_pred CceEEECCCcccccccchh----hhHHHHHHHHhhhcc-ccCCEEEEeCCCccchHHHHHHHHH--CCEEEEEecCcHHH
Confidence 8999998775432211111 11223344444 55 78999999999988643 3455555 99999999999999
Q ss_pred HHHHHHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhh
Q psy14655 145 LQVAQRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLI 220 (261)
Q Consensus 145 ~~~~~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~ 220 (261)
+.++.++++.++.. +.+++|+|+||++. ...... ..+.+|.+++. .||
T Consensus 194 ~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~------------~~~~~~----------~~~~~g~~v~~-~Ip----- 245 (307)
T 3end_A 194 IYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA------------TDEVDR----------FCKETNFRRLA-HMP----- 245 (307)
T ss_dssp HHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC------------CHHHHH----------HHHHHTCCEEE-EEC-----
T ss_pred HHHHHHHHHHHHHhhhcCCCceEEEEEecCCc------------HHHHHH----------HHHHcCCCcee-eCC-----
Confidence 99999999999863 55678999999652 011111 12235766665 589
Q ss_pred hhhhccccCCCCCCCCcchhhhhh
Q psy14655 221 IKIRNVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 221 ~~~~~~~~~~a~~~g~~v~~~~~~ 244 (261)
++..+.+|...|+|++++.+.
T Consensus 246 ---~~~~v~~a~~~g~~v~~~~p~ 266 (307)
T 3end_A 246 ---DLDAIRRSRLKKKTLFEMDED 266 (307)
T ss_dssp ---CCHHHHHHHHTTCCTTTSCCC
T ss_pred ---ccHHHHHHHHcCCCeEeeCCc
Confidence 888999999999999988765
No 12
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.96 E-value=2.8e-29 Score=220.82 Aligned_cols=214 Identities=17% Similarity=0.188 Sum_probs=113.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHH------hcCCCCeEEEEecCCCCCCcccccCCCCCCCCC-----------------c
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMK------ICYPDKEIGILDADVFGPSIPILMNLPDTPLLN-----------------K 57 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la------~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~-----------------~ 57 (261)
+|+|+||||||||+|+|||..|| +.| +|||+||+|+|+ +++.+|+........ .
T Consensus 115 av~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g--~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 191 (403)
T 3ez9_A 115 FVVNLKGGVSKTVSTVTLAHALRVHQDLLRHD--LRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLDAETLR 191 (403)
T ss_dssp EECCC--------CHHHHHHHHHSCGGGGGGC--CCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCCHHHHH
T ss_pred EEEcCCCCchHHHHHHHHHHHHHhcchhhcCC--CeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhcccccccH
Confidence 48999999999999999999999 678 999999999997 678888876432110 1
Q ss_pred CCccccccccCceeecCCCCcccchh----hh---hhc-hHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhc
Q psy14655 58 DNLMIPLVNYGVKCLSMGNLITEKSA----AI---WRG-LMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNL 129 (261)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~----~~---~~~-~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~ 129 (261)
.+.+.+...++++++|++........ .. ..+ ......++.+++.++ ++||||||||||+.+.....++..
T Consensus 192 ~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~al~~- 269 (403)
T 3ez9_A 192 KEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLNGLAA- 269 (403)
T ss_dssp HTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHHHHHH-
T ss_pred HHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHHHHHH-
Confidence 22334445579999998876421100 00 000 111123356677777 899999999999999888888887
Q ss_pred CCCeEEEEeCCCcchHHHHHH-------HHHHHHhC--CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhh
Q psy14655 130 FIDTAIIITIPDTMSLQVAQR-------GYTMFKKL--NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSY 200 (261)
Q Consensus 130 ~ad~viiv~~~~~~s~~~~~~-------~~~~l~~~--~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (261)
||.+|+|+.|+..++.++.. +++.+++. +.++.|++.++... ... ... + ...+.
T Consensus 270 -aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~------------~~~--~~~-~-~~~~~ 332 (403)
T 3ez9_A 270 -SDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKM------------TGK--RDH-E-TSHSL 332 (403)
T ss_dssp -CSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---------------C--HHH-H-HHHHH
T ss_pred -CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEecc------------CCc--hhH-H-HHHHH
Confidence 99999999999887655443 34444444 34455554443221 111 000 0 12223
Q ss_pred hhhhhcccccccccCcchhhhhhhccccCCCCCCCCcchhhhhh
Q psy14655 201 ERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 201 ~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~~ 244 (261)
..+.+|.+++.+.|| ++..+.++...|.|++++++.
T Consensus 333 ~~~~~g~~vl~~~IP--------~~~~v~~a~~~G~~v~~~~p~ 368 (403)
T 3ez9_A 333 AREVYASNILDSSLP--------RLDGFERCGESFDTVISANPQ 368 (403)
T ss_dssp HHHHHTTSEECCC-------------------------------
T ss_pred HHHHhhHhhhceeCC--------chHHHHHHHhcCCCceecCCc
Confidence 455588888888899 999999999999999988754
No 13
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.96 E-value=2.9e-29 Score=212.81 Aligned_cols=206 Identities=21% Similarity=0.228 Sum_probs=138.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC--------CcCCc----cccccccC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL--------NKDNL----MIPLVNYG 68 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~--------~~~~~----~~~~~~~~ 68 (261)
||+ +||||||||+|+|||.+||+.| +|||+||+|||.+++..+.+....... ..... .......+
T Consensus 52 AIa-GKGGVGKTTtavNLA~aLA~~G--kkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 128 (314)
T 3fwy_A 52 AVY-GKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEGFNG 128 (314)
T ss_dssp EEE-CSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEECGGG
T ss_pred EEE-CCCccCHHHHHHHHHHHHHHCC--CeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeecCCC
Confidence 354 7999999999999999999999 999999999999876544433222111 00010 11233557
Q ss_pred ceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHH-HHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 69 VKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHL-SLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~-~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
+.++|++....... +........+..+.+...++.||||++||+++...... +++.. ||.+++|++|+..++.+
T Consensus 129 i~~v~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~~al~a--Ad~viIvt~~e~~Al~~ 203 (314)
T 3fwy_A 129 VMCVEAGGPPAGTG---CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFAAPLQH--ADQAVVVTANDFDSIYA 203 (314)
T ss_dssp CEEEECCCCCTTCS---CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGGGGGGT--CSEEEEEECSSHHHHHH
T ss_pred eEEEeCCCCcccch---hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhHhHHhh--CCeEEEEeCCcHHHHHH
Confidence 88888776543211 11122233343333322237899999999998765543 44555 99999999999999999
Q ss_pred HHHHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhh
Q psy14655 148 AQRGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKI 223 (261)
Q Consensus 148 ~~~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~ 223 (261)
+.++++.++.. +.++.|+|+|+... .....+ +.++ ++.+++. .||
T Consensus 204 ~~~l~~~i~~~~~~~~~~l~GiI~n~~~~------------~~~v~~-----~a~~-----~~~~~lg-~IP-------- 252 (314)
T 3fwy_A 204 MNRIIAAVQAKSKNYKVRLAGCVANRSRA------------TDEVDR-----FCKE-----TNFRRLA-HMP-------- 252 (314)
T ss_dssp HHHHHHHHHTTTTTCCCEEEEEEEESCSC------------CHHHHH-----HHHH-----HTCCEEE-EEC--------
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCc------------hhHHHH-----HHHH-----hCCeEEE-Eec--------
Confidence 99998888764 45678999998432 111111 2222 3444443 489
Q ss_pred hccccCCCCCCCCcchhhhhhh
Q psy14655 224 RNVAYGNSHGHGNTVHHHHVLN 245 (261)
Q Consensus 224 ~~~~~~~a~~~g~~v~~~~~~~ 245 (261)
++..+++|...|+||++|++.+
T Consensus 253 ~d~~Vr~a~~~G~pvv~~~P~S 274 (314)
T 3fwy_A 253 DLDAIRRSRLKKKTLFEMDEDQ 274 (314)
T ss_dssp CCHHHHHHHHTTCCTTTSCCCH
T ss_pred CchHHHHHHHcCCceEEECCCC
Confidence 8888999989999999988655
No 14
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.95 E-value=3.4e-29 Score=208.61 Aligned_cols=209 Identities=20% Similarity=0.186 Sum_probs=140.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc-----------CCccccccccCceee
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK-----------DNLMIPLVNYGVKCL 72 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~ 72 (261)
++||||||||+|+|||.+||++| +|||+||+|+|++.+.++++.....++.+ .+.+ ....++++++
T Consensus 7 s~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i-~~~~~~l~vl 83 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSIL-KEGYGGIRCV 83 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHC-EECGGGCEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhh-ccCCCCeeEE
Confidence 68999999999999999999999 99999999999988777776554432211 1111 1235689999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
|.+....... ...........+.+.++.++ ++||||||||||+.... ....+....||.+++|+.|+..++..+.++
T Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~ 161 (269)
T 1cp2_A 84 ESGGPEPGVG-CAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNI 161 (269)
T ss_dssp ECCCCCTTSS-CHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHH
T ss_pred eCCCchhhcc-ccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHH
Confidence 9876543211 11111111112333344445 78999999999876432 111111112999999999999999999998
Q ss_pred HHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccc
Q psy14655 152 YTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVA 227 (261)
Q Consensus 152 ~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~ 227 (261)
++.+... +.+.+|+|+|+++.. ...+.... ..+.+|.+++ ..|| ++..
T Consensus 162 ~~~l~~~~~~~~~~~~gvv~N~~~~~---------~~~~~~~~----------l~~~~~~~v~-~~Ip--------~~~~ 213 (269)
T 1cp2_A 162 SKGIQKYAKSGGVRLGGIICNSRKVA---------NEYELLDA----------FAKELGSQLI-HFVP--------RSPM 213 (269)
T ss_dssp HHHHHHHBTTBBCEEEEEEEECCSSS---------CCHHHHHH----------HHHHHTCCEE-EEEC--------CCHH
T ss_pred HHHHHHHHhcCCCcEEEEEeecCCcc---------hhHHHHHH----------HHHHcCCccc-ccCC--------CCcH
Confidence 8888753 556789999995420 00111111 1223576666 4799 8889
Q ss_pred cCCCCCCCCcchhhhhhh
Q psy14655 228 YGNSHGHGNTVHHHHVLN 245 (261)
Q Consensus 228 ~~~a~~~g~~v~~~~~~~ 245 (261)
+.+|...|+|++++.+.+
T Consensus 214 ~~~a~~~g~~v~~~~~~s 231 (269)
T 1cp2_A 214 VTKAEINKQTVIEYDPTC 231 (269)
T ss_dssp HHHHHHTTSCHHHHCTTS
T ss_pred HHHHHHcCCceEEECCCC
Confidence 999999999999876544
No 15
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.95 E-value=6.7e-30 Score=224.44 Aligned_cols=214 Identities=16% Similarity=0.209 Sum_probs=146.3
Q ss_pred CcccCCCCCcHHHHHHHHHHHHH------hcCCCCeEEEEecCCCCCCcccccCCCCCCCCC-----------------c
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMK------ICYPDKEIGILDADVFGPSIPILMNLPDTPLLN-----------------K 57 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la------~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~-----------------~ 57 (261)
+|+|+||||||||+|+|||..|| +.| +|||+||+|+|+ +++.+|+........ .
T Consensus 112 av~s~KGGvGKTT~a~nLA~~La~~~~~~~~g--~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 188 (398)
T 3ez2_A 112 FISNLKGGVSKTVSTVSLAHAMRAHPHLLMED--LRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVSREELL 188 (398)
T ss_dssp EECCSSSSSSHHHHHHHHHHHHHHCTTTGGGC--CCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCCHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcchhhcCC--CeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhccccccH
Confidence 48899999999999999999999 468 999999999986 577888765321100 0
Q ss_pred CCccccccccCceeecCCCCcccch----hhh---h-hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhc
Q psy14655 58 DNLMIPLVNYGVKCLSMGNLITEKS----AAI---W-RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNL 129 (261)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~----~~~---~-~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~ 129 (261)
.+.+.+...++++++|++....... ... . ........++++++.++ ++||||||||||+.+.....++..
T Consensus 189 ~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~l~~- 266 (398)
T 3ez2_A 189 EEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKNALAS- 266 (398)
T ss_dssp HHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHHHHHH-
T ss_pred HHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHHHHHH-
Confidence 1223344557999999887542110 000 0 01111224467778888 899999999999999988888887
Q ss_pred CCCeEEEEeCCCcchHHHHHH-------HHHHHHhC--CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhh
Q psy14655 130 FIDTAIIITIPDTMSLQVAQR-------GYTMFKKL--NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSY 200 (261)
Q Consensus 130 ~ad~viiv~~~~~~s~~~~~~-------~~~~l~~~--~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (261)
||.+|+|+.|+..++..+.. +++.+++. +.++.|+|.|+.... ...... ...+.
T Consensus 267 -aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~-----------~~~~~~-----~~~~~ 329 (398)
T 3ez2_A 267 -ANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLS-----------NKADHK-----YCHSL 329 (398)
T ss_dssp -CSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEEC-----------SCHHHH-----HHHHH
T ss_pred -CCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCC-----------CchhHH-----HHHHH
Confidence 99999999999887655444 33444444 445566666653210 011011 11122
Q ss_pred hhhhhcccccccccCcchhhhhhhccccCCCCCCCCcchhhhhh
Q psy14655 201 ERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHHHHVL 244 (261)
Q Consensus 201 ~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~~ 244 (261)
..+.+|.+++.+.|| ++..+.++...|.|++++.+.
T Consensus 330 l~~~~g~~vl~~~IP--------~~~~i~~a~~~G~~v~~~~p~ 365 (398)
T 3ez2_A 330 AKEVFGGDMLDVFLP--------RLDGFERCGESFDTVISANPA 365 (398)
T ss_dssp HHHHHGGGBCSCCEE--------CCHHHHHHHHTTCCTTTSCTT
T ss_pred HHHHhcccccceecc--------chHHHHHHHhcCCCceeeccc
Confidence 345578888888899 999999999999999988754
No 16
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.95 E-value=3.6e-28 Score=203.77 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=134.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCC--------cCCccccccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLN--------KDNLMIPLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~ 72 (261)
+|+|.|||+||||+|+|||..||+.| +|||+||+|++.+++..+|+.+...++. ..+.+.+...++++++
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l~vl 173 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQTN--KRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLI 173 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTT--CCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCEEEE
Confidence 47899999999999999999999999 9999999999999999999988765442 2444555566899999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHH-HhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLS-LIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~-~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
|.+.......... ....+.++++.++ ++||+|||||||........ +... ||.+++|+.++..+...+.+.
T Consensus 174 ~~g~~~~~~~ell-----~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~l~~~--aD~vllVv~~~~~~~~~~~~~ 245 (286)
T 3la6_A 174 PRGQVPPNPSELL-----MSERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIVGRH--VGTTLMVARYAVNTLKEVETS 245 (286)
T ss_dssp CCCSCCSCHHHHH-----TSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHHTTT--CSEEEEEEETTTSBHHHHHHH
T ss_pred eCCCCCCCHHHHh-----chHHHHHHHHHHH-hCCCEEEEcCCCCcchHHHHHHHHH--CCeEEEEEeCCCCcHHHHHHH
Confidence 9998765443332 2356888888888 89999999999987654333 3333 999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.++..+.+++|+|+|+++.
T Consensus 246 ~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 246 LSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HHHHHHTTCCCCEEEEEEECC
T ss_pred HHHHHhCCCCEEEEEEcCccc
Confidence 999999999999999999764
No 17
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.95 E-value=4.7e-29 Score=210.03 Aligned_cols=210 Identities=19% Similarity=0.204 Sum_probs=138.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc-------------CCccccccccCce
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK-------------DNLMIPLVNYGVK 70 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~ 70 (261)
++||||||||+|+|||.+||++| +|||+||+|+|++++.++++....+++.+ .+.+ ....++++
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i-~~~~~~l~ 84 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVL-KAGYGGVK 84 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHC-EECGGGCE
T ss_pred eCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhh-ccCCCCeE
Confidence 68999999999999999999999 99999999999988777776544332210 1111 12356899
Q ss_pred eecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCCCcchHHHHH
Q psy14655 71 CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~~~~s~~~~~ 149 (261)
++|.+....... ...........+.+.+..++ ++||||||||||..... ....+....||.+++|+.|+..++.++.
T Consensus 85 ~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~-~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~ 162 (289)
T 2afh_E 85 CVESGGPEPGVG-CAGRGVITAINFLEEEGAYE-DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAAN 162 (289)
T ss_dssp EEECCCCCTTTC-CHHHHHHHHHHHHHHTTCSS-TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHH
T ss_pred EEeCCCcccccc-ccchhhhHHHHHHHHHHhhc-cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHH
Confidence 999876433211 11111111112223333344 68999999999865321 1111111229999999999999999999
Q ss_pred HHHHHHHhC----CCCeEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhc
Q psy14655 150 RGYTMFKKL----NIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRN 225 (261)
Q Consensus 150 ~~~~~l~~~----~~~~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~ 225 (261)
.+++.+... +.+.+++|+|+++. ...... .+ ...+.+|.+++ ..|| ++
T Consensus 163 ~~~~~l~~~~~~~~~~~~gvv~N~~~~-------------~~~~~~-----~~-~l~~~~g~~~l-~~Ip--------~~ 214 (289)
T 2afh_E 163 NISKGIVKYANSGSVRLGGLICNSRNT-------------DREDEL-----II-ALANKLGTQMI-HFVP--------RD 214 (289)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEEECCCC-------------TTHHHH-----HH-HHHHHHTSCEE-EEEC--------CC
T ss_pred HHHHHHHHHHhcCCCceEEEEEecCCc-------------hhHHHH-----HH-HHHHHcCcccc-ccCC--------Cc
Confidence 888877653 66778999998531 001111 11 12233576666 4699 88
Q ss_pred cccCCCCCCCCcchhhhhhhh
Q psy14655 226 VAYGNSHGHGNTVHHHHVLNL 246 (261)
Q Consensus 226 ~~~~~a~~~g~~v~~~~~~~~ 246 (261)
..+.+|...|+|++++.+.+.
T Consensus 215 ~~~~~a~~~g~~v~~~~~~s~ 235 (289)
T 2afh_E 215 NVVQRAEIRRMTVIEYDPKAK 235 (289)
T ss_dssp HHHHHHHHTTSCHHHHCTTSH
T ss_pred hhHHHHHHcCCCceeeCCCCH
Confidence 899999999999998875443
No 18
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.95 E-value=7.9e-29 Score=206.28 Aligned_cols=203 Identities=17% Similarity=0.098 Sum_probs=128.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC-------CCCC--------CcCCcccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD-------TPLL--------NKDNLMIPLV 65 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~-------~~~~--------~~~~~~~~~~ 65 (261)
+|+|+|||+||||+|+|||.+|| +| +|||+||+|+|++....+++... ..++ ...+.+.+.
T Consensus 31 ~v~s~kGGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~- 106 (267)
T 3k9g_A 31 TIASIKGGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTIINV- 106 (267)
T ss_dssp EECCSSSSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGCEEE-
T ss_pred EEEeCCCCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhhccC-
Confidence 47899999999999999999999 89 99999999999865444322110 1111 112222222
Q ss_pred ccCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchH
Q psy14655 66 NYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSL 145 (261)
Q Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~ 145 (261)
.++++++|++........... ......+.+.++.++ .+||||||||||+.+.....++.. ||.+++|+.|+..++
T Consensus 107 ~~~l~~lp~~~~~~~~~~~~~--~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~l~~--aD~vivv~~~~~~s~ 181 (267)
T 3k9g_A 107 DNNLDLIPSYLTLHNFSEDKI--EHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNALLC--SDYVIIPMTAEKWAV 181 (267)
T ss_dssp ETTEEEECCCGGGGGTTTCCC--TTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHHHTT--CSEEEEEEESCTTHH
T ss_pred CCCEEEEeCChHHHHHHHhhh--hhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHHHHH--CCeEEEEeCCChHHH
Confidence 478999998865542222111 112346788888888 899999999999999888888876 999999999999999
Q ss_pred HHHHHHHHHHHhCCCC-eEEEEEcCCCCCCCCCCcccccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhh
Q psy14655 146 QVAQRGYTMFKKLNIP-VAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIR 224 (261)
Q Consensus 146 ~~~~~~~~~l~~~~~~-~~giv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~ 224 (261)
..+.++++.+++.+.+ .+++|+||+.. ..... .+.+ ...+ +..+ ...|| +
T Consensus 182 ~~~~~~~~~l~~~~~~~~~~vv~N~~~~--------~~~~~----~~~~------~l~~--~~~~-~~~Ip--------~ 232 (267)
T 3k9g_A 182 ESLDLFNFFVRKLNLFLPIFLIITRFKK--------NRTHK----TLFE------ILKT--KDRF-LGTIS--------E 232 (267)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEECT--------TCSCC----HHHH------HHTT--STTE-EEEEE--------C
T ss_pred HHHHHHHHHHHHHhccCCEEEEEecccC--------cchHH----HHHH------HHhc--Cccc-ceecC--------c
Confidence 9999999999988543 46799999521 11111 1111 1111 2222 24699 9
Q ss_pred ccccCCCCCCCCcchhh
Q psy14655 225 NVAYGNSHGHGNTVHHH 241 (261)
Q Consensus 225 ~~~~~~a~~~g~~v~~~ 241 (261)
+..+.++...|.++...
T Consensus 233 ~~~~~~a~~~g~~~~~~ 249 (267)
T 3k9g_A 233 REDLNRRIAENNNFDLN 249 (267)
T ss_dssp ----------------C
T ss_pred HHHHHHHHHhcCCcchh
Confidence 99999999999987754
No 19
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.95 E-value=8.2e-28 Score=200.36 Aligned_cols=162 Identities=22% Similarity=0.288 Sum_probs=130.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------CCccccccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------DNLMIPLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~ 72 (261)
+|+|.|||+||||+|+|||..||+.| +|||+||+|++.+++..+|+.+...++.+ .+.+.+...++++++
T Consensus 86 ~vts~kgG~GKTt~a~nLA~~lA~~G--~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~vl 163 (271)
T 3bfv_A 86 VITSEAPGAGKSTIAANLAVAYAQAG--YKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDLDVL 163 (271)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCC--CeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCEEEE
Confidence 47899999999999999999999999 99999999999999989999876544321 223334445799999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHH-HhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLS-LIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~-~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
|++.......... ....+.++++.++ ++||+|||||||........ +... ||.+++|+.++..+...+.++
T Consensus 164 ~~g~~~~~~~ell-----~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~~--aD~vilVv~~~~~~~~~~~~~ 235 (271)
T 3bfv_A 164 TSGPIPPNPSELI-----TSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQLFSKF--TGNVVYVVNSENNNKDEVKKG 235 (271)
T ss_dssp CCCSCCSCHHHHH-----TSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHHHHHH--HCEEEEEEETTSCCHHHHHHH
T ss_pred ECCCCCCCHHHHh-----ChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHHHHHH--CCEEEEEEeCCCCcHHHHHHH
Confidence 9988765433322 1345778888888 89999999999987544333 3344 899999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.+++.+.+++|+|+|+++.
T Consensus 236 ~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 236 KELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HHHHHTTTCEEEEEEEEEECC
T ss_pred HHHHHhCCCCEEEEEEeCCcC
Confidence 999999999999999999654
No 20
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.94 E-value=6.6e-28 Score=193.71 Aligned_cols=174 Identities=21% Similarity=0.227 Sum_probs=131.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITE 80 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (261)
+|+|+|||+||||+|.|||..|+++| ||++||+|+|++ +..+++. ++ + + .++++..
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~-~~~~~~~-~~--l-------~-----~~vi~~~----- 59 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRS-ATGWGKR-GS--L-------P-----FKVVDER----- 59 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCH-HHHHHHH-SC--C-------S-----SEEEEGG-----
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCC-HHHHhcC-CC--C-------C-----cceeCHH-----
Confidence 47899999999999999999999874 999999999974 5555544 11 1 0 1333310
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCC-CChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC-
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPG-TGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL- 158 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~-~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~- 158 (261)
.++.++ ..||||||||||+ .+.....++.. ||.+|+|+.|+..++..+.++++.++..
T Consensus 60 -----------------~l~~l~-~~yD~viiD~p~~~~~~~~~~~l~~--aD~viiv~~~~~~~~~~~~~~~~~l~~~~ 119 (209)
T 3cwq_A 60 -----------------QAAKYA-PKYQNIVIDTQARPEDEDLEALADG--CDLLVIPSTPDALALDALMLTIETLQKLG 119 (209)
T ss_dssp -----------------GHHHHG-GGCSEEEEEEECCCSSSHHHHHHHT--SSEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred -----------------HHHHhh-hcCCEEEEeCCCCcCcHHHHHHHHH--CCEEEEEecCCchhHHHHHHHHHHHHhcc
Confidence 344555 8899999999999 78777777776 9999999999999999999999999885
Q ss_pred CCCeEEEEEcCCCCCCCCCCccc-ccccchhHHHHHhhhhhhhhhhhhcccccccccCcchhhhhhhccccCCCCCCCCc
Q psy14655 159 NIPVAGLVMNMNSVLCPSCNHMF-ELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNT 237 (261)
Q Consensus 159 ~~~~~giv~N~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ip~~~~~~~~~~~~~~~a~~~g~~ 237 (261)
+.+ +++|+|+++.. . .. ... ..+..++ +|.+++.+.|| ++..+.+|...|+|
T Consensus 120 ~~~-~~vv~N~~~~~-------~~~~----~~~------~~~~l~~-~g~~v~~~~Ip--------~~~~~~~a~~~g~~ 172 (209)
T 3cwq_A 120 NNR-FRILLTIIPPY-------PSKD----GDE------ARQLLTT-AGLPLFKRGIK--------RYSAFQKASLNGVV 172 (209)
T ss_dssp SSS-EEEEECSBCCT-------TSCH----HHH------HHHHHHH-TTCCBCSSCCB--------CCTHHHHHHHHTSC
T ss_pred CCC-EEEEEEecCCc-------cchH----HHH------HHHHHHH-cCCchhhccCC--------CcHHHHHHHHcCCC
Confidence 455 88999995531 1 11 111 1122233 67778877899 89999999999999
Q ss_pred chhh-hhhh
Q psy14655 238 VHHH-HVLN 245 (261)
Q Consensus 238 v~~~-~~~~ 245 (261)
++++ .+.+
T Consensus 173 v~~~~~p~~ 181 (209)
T 3cwq_A 173 VSEVSDSKA 181 (209)
T ss_dssp TTTSSSTTH
T ss_pred HHHhCCccc
Confidence 9988 6544
No 21
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.94 E-value=4e-27 Score=198.88 Aligned_cols=162 Identities=14% Similarity=0.242 Sum_probs=130.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--------CCccccccccCceee
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--------DNLMIPLVNYGVKCL 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~ 72 (261)
+|+|.|||+||||+|+|||..||+.| +|||+||+|++.+++..+|+.....++.+ .+.+.+...++++++
T Consensus 108 ~vts~kgG~GKTtva~nLA~~lA~~G--~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l~vl 185 (299)
T 3cio_A 108 MITGATPDSGKTFVSSTLAAVIAQSD--QKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVI 185 (299)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTT--CCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTEEEE
T ss_pred EEECCCCCCChHHHHHHHHHHHHhCC--CcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCEEEE
Confidence 47899999999999999999999999 99999999998889999999876554422 223344445899999
Q ss_pred cCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHh-hhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 73 SMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLI-QNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~-~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
|++.......... ....+.++++.++ ++||+|||||||.........+ .. +|.+|+|+.++..+...+..+
T Consensus 186 ~~g~~~~~~~ell-----~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~l~~~--ad~vilV~~~~~~~~~~~~~~ 257 (299)
T 3cio_A 186 TRGQVPPNPSELL-----MRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVVGRS--VGTSLLVARFGLNTAKEVSLS 257 (299)
T ss_dssp CCCSCCSCHHHHH-----TSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHHHGGG--CSEEEEEEETTTSCTTHHHHH
T ss_pred ECCCCCCCHHHHh-----CHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHHHHHH--CCEEEEEEcCCCChHHHHHHH
Confidence 9987765433222 2345788888888 8999999999998764332233 33 999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.+++.+.+++|+|+|+++.
T Consensus 258 ~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 258 MQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HHHHHHTTCCCCCEEEEECCC
T ss_pred HHHHHhCCCCeEEEEEeCCcc
Confidence 999999999999999999764
No 22
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.94 E-value=4e-28 Score=204.06 Aligned_cols=205 Identities=17% Similarity=0.131 Sum_probs=139.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCc-eeecCCC--C
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGV-KCLSMGN--L 77 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~--~ 77 (261)
+|+|+|||+||||+|+|||..|+++| +||++||+|+.++++..+++.... +.+ ........++ +++|.+. .
T Consensus 8 ~v~s~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~~l~~~~~--~~~--~~~~~~~~~l~~vl~~~~~~~ 81 (286)
T 2xj4_A 8 VVGNEKGGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSARFFENRRA--WLD--NKKIELPEPLALNLSDNDVAL 81 (286)
T ss_dssp EECCSSSCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHHHHHHHHH--HHH--HHTCCCCCCEEECSSSCHHHH
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHHHhCCChh--HhH--hccccCCCchheEeeCCCCCC
Confidence 47899999999999999999999999 999999999933567777764321 000 0000112456 6777532 1
Q ss_pred cccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHH---
Q psy14655 78 ITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTM--- 154 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~--- 154 (261)
.... .......+.+.++.++ .+||||||||||+.+.....++.. ||.+|+|+.|+..++..+.++++.
T Consensus 82 ~~~~------~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~l~~--aD~viiv~~~~~~~~~~~~~~~~~~~~ 152 (286)
T 2xj4_A 82 AERP------EEEQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMAHGR--ADLVVTPMNDSFVDFDMLGTVDPVTLE 152 (286)
T ss_dssp TTSC------HHHHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHHHHT--CSEEEEEEESSHHHHTTTEEECTTTCC
T ss_pred cChh------hhhhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHHHHH--CCEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 1111 1123456888888888 899999999999998888777777 999999999999888776654444
Q ss_pred ----------H---Hh-------CCCCeEEEEEcCCCCCCCCCCccc-ccccchhHHHHHhhhhhhhhhhhhcccccccc
Q psy14655 155 ----------F---KK-------LNIPVAGLVMNMNSVLCPSCNHMF-ELYENNLHQFEAKNFLKSYERKLYGIHMWNFL 213 (261)
Q Consensus 155 ----------l---~~-------~~~~~~giv~N~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 213 (261)
+ +. .+...+++|+|+++. +. ... ....+ .+++.. +.+|. .+.+.
T Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~-------~~~~~~----~~~~~--~l~~~~-~~~g~-~~~~~ 217 (286)
T 2xj4_A 153 LTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLAT-------TEARNR----KRLED--RLNALA-KRVGF-RIGPG 217 (286)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTT-------CCGGGH----HHHHH--HHHHHH-HHHCC-EEEEC
T ss_pred ccccchhhhhhhcchhhhhhccCCccccEEEEEeeecC-------CCcchh----HHHHH--HHHHHH-HHcCC-ccCCC
Confidence 4 31 130247899999653 11 111 11111 121111 11566 66778
Q ss_pred cCcchhhhhhhccccCCCCCCCCcchhhhh
Q psy14655 214 IPLCNLIIKIRNVAYGNSHGHGNTVHHHHV 243 (261)
Q Consensus 214 ip~~~~~~~~~~~~~~~a~~~g~~v~~~~~ 243 (261)
|| ++..+.+|...|+|++++.+
T Consensus 218 Ip--------~~~~~~~a~~~g~~v~~~~~ 239 (286)
T 2xj4_A 218 LR--------DRVIYRELFPFGLTIADLSP 239 (286)
T ss_dssp CC--------CCHHHHHHGGGTCCGGGCBT
T ss_pred CC--------chHHHHHHHHcCCCHHHhCc
Confidence 99 89999999999999999876
No 23
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.90 E-value=5e-24 Score=183.64 Aligned_cols=165 Identities=18% Similarity=0.234 Sum_probs=108.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceee--------
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCL-------- 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 72 (261)
+|+|+|||+||||+|+|||..||+.| +|||+||+|++ ++++.+|+.+......... ..+++...
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~-----g~~~l~~~~id~~~~~ 100 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG--LKVVIVSTDPA-HSLRDIFEQEFGHEPTKVK-----GYDNLYVVEIDPQKAM 100 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS--CCEEEEECCTT-CHHHHHHCSCCCSSCEECT-----TCSSEEEEECCHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC-CCHHHHhCCCCCcCccccc-----cccceeeeccCHHHHH
Confidence 47899999999999999999999999 99999999996 5788888876432111100 00111111
Q ss_pred ---------------cCCCCcccc--hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHH------------
Q psy14655 73 ---------------SMGNLITEK--SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHL------------ 123 (261)
Q Consensus 73 ---------------~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~------------ 123 (261)
+.+...... .....++......+..+.+.+...+||+|||||||+.+....
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~~~~~~~ 180 (349)
T 3ug7_A 101 EEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEVMDKYMT 180 (349)
T ss_dssp HHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHHHHHHHH
Confidence 111000000 000111222223344444444447899999999996532100
Q ss_pred -------------------------------------------------HHhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 124 -------------------------------------------------SLIQNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 124 -------------------------------------------------~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
..+.....+.+++|+.|+..++.++.+.++.
T Consensus 181 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~~r~~~~ 260 (349)
T 3ug7_A 181 KLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESERAMKA 260 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHHHHHHHH
Confidence 0111111367999999999999999999999
Q ss_pred HHhCCCCeEEEEEcCCCCC
Q psy14655 155 FKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~~~ 173 (261)
+++.+++..|+|+||+...
T Consensus 261 l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 261 LQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp HHHTTCCEEEEEEEEECCS
T ss_pred HHHCCCCeeEEEEcCCccc
Confidence 9999999999999998765
No 24
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.90 E-value=2.4e-24 Score=183.96 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=105.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc-CCcc---------------ccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK-DNLM---------------IPL 64 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~ 64 (261)
+|+|+||||||||+|+|||..+|+.| +|||+||+|++ ++++.+|+.+....... ...+ ...
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~~G--~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~~~~ 93 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMARSG--KKTLVISTDPA-HSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQAKL 93 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEECCSS-CCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHHHC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCC--CcEEEEeCCCC-cCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHHHHH
Confidence 47899999999999999999999999 99999999995 57888898764222110 0000 000
Q ss_pred cccCceeecCCCCc-ccc--hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH-------------------
Q psy14655 65 VNYGVKCLSMGNLI-TEK--SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH------------------- 122 (261)
Q Consensus 65 ~~~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~------------------- 122 (261)
......+++.+... ... .....++......+.++.+.+...+||+|||||||+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~~~~ 173 (324)
T 3zq6_A 94 QEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIKIR 173 (324)
T ss_dssp ---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 00001122222100 000 00011222222334444444433789999999999431100
Q ss_pred ----------------------------------------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCe
Q psy14655 123 ----------------------------------------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPV 162 (261)
Q Consensus 123 ----------------------------------------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~ 162 (261)
...+.....+.+++|+.|+..++..+.+.++.+.+.+++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v 253 (324)
T 3zq6_A 174 RQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSIHA 253 (324)
T ss_dssp HHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCCCCc
Confidence 0011111135899999999999999999999999999999
Q ss_pred EEEEEcCCCCC
Q psy14655 163 AGLVMNMNSVL 173 (261)
Q Consensus 163 ~giv~N~~~~~ 173 (261)
.|+|+|++...
T Consensus 254 ~gvV~N~~~~~ 264 (324)
T 3zq6_A 254 DGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEEECCS
T ss_pred cEEEEcCCccc
Confidence 99999997764
No 25
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.89 E-value=2.3e-23 Score=181.21 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=111.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc----------------CCccccc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK----------------DNLMIPL 64 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 64 (261)
+|+|+|||+||||+|+|||..||++| +|||+||+| ..++++.++|.++..++.+ .+.+. .
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~g--~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~i~-~ 222 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANMG--KKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESCIK-Q 222 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHHT--CCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHTCE-E
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCC--CCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHHhh-c
Confidence 47899999999999999999999999 999999999 5568899999887654422 11111 2
Q ss_pred cccCceeecCCCCcccchhhhhhchHHHHHHHHHHHHhc-cCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcc
Q psy14655 65 VNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTM 143 (261)
Q Consensus 65 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~ 143 (261)
...+++++|.+......... ....+..+++.++ ...||+|||||||+.+.....++.. ||.+++|+.|+..
T Consensus 223 ~~~~l~~l~~~~~~~~~~~~------~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~~~~~~l~~--aD~vivv~~~~~~ 294 (373)
T 3fkq_A 223 SQEGVSYFSSTKVALDILEI------SYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSK--AWRIIVVNDGSQL 294 (373)
T ss_dssp CTTSCEECCCCSSGGGGGGC------CHHHHHHHHHHHHHTSCCSEEEEECCCCCCHHHHHHHTT--CSEEEEEECCCHH
T ss_pred CCCCEEEecCCCChHhHHhC------CHHHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHH--CCEEEEEecCCch
Confidence 24789999987654332221 1223444444443 3589999999999999888888877 9999999999998
Q ss_pred hHHHHHH---HHHHHHhCCCCeEEEEEcC
Q psy14655 144 SLQVAQR---GYTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 144 s~~~~~~---~~~~l~~~~~~~~giv~N~ 169 (261)
++..+.. +++.+... . .+++|.|+
T Consensus 295 s~~~l~~~~~~l~~l~~~-~-~~~vv~N~ 321 (373)
T 3fkq_A 295 SNYKFMRAYESVVLLEQN-D-DINIIRNM 321 (373)
T ss_dssp HHHHHHHHHHHHHHHTTS-T-TCCCGGGE
T ss_pred HHHHHHHHHHHHHHhccc-C-CcEEEehh
Confidence 8555554 44444442 2 25566565
No 26
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.89 E-value=2.1e-23 Score=179.89 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=110.5
Q ss_pred CcccCCCCCcHHHHHHHHHHHHH--hcCCCCeEEEEecCCCCCCcccccCCCCCCCCC----cCCcc----------cc-
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMK--ICYPDKEIGILDADVFGPSIPILMNLPDTPLLN----KDNLM----------IP- 63 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la--~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~----~~~~~----------~~- 63 (261)
+|+|+||||||||+|+|||..|| +.| +|||+||+|++ ++++.+|+.+...... ..+.. ..
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G--~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l~~~ 97 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPN--KQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAALKDM 97 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHHHHHH
Confidence 47899999999999999999999 899 99999999997 7889999986431100 00100 00
Q ss_pred ---ccc--c---------CceeecCCCCcccchh--hhhhchHHHHHHHHHHHHhccC------CCCEEEEeCCC-CC--
Q psy14655 64 ---LVN--Y---------GVKCLSMGNLITEKSA--AIWRGLMVMQALNKLTVQVQWG------PCDILFIDTPP-GT-- 118 (261)
Q Consensus 64 ---~~~--~---------~l~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~l~~~------~yd~IiiD~~~-~~-- 118 (261)
... + +++.++.+... .. ...++......+.++++.++.. +|||||||||| |.
T Consensus 98 ~~~~~~~~~~~~~~~~g~~l~~l~~~~~~---~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~tL 174 (354)
T 2woj_A 98 NDMAVSRANNNGSDGQGDDLGSLLQGGAL---ADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTL 174 (354)
T ss_dssp HTC--------------------CCSSHH---HHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHHH
T ss_pred HHHHHhhcccccccchhhhhhhccchhHH---HHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHHH
Confidence 000 0 34444422111 11 1123334446677788777621 79999999999 32
Q ss_pred -------------------ChhHH-----------------------------HHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 119 -------------------GDTHL-----------------------------SLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 119 -------------------~~~~~-----------------------------~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
..... ..+....+|.+++|+.|+..++.++.+
T Consensus 175 rlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~r 254 (354)
T 2woj_A 175 RFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETER 254 (354)
T ss_dssp HHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHHH
Confidence 00000 011111378999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEcCCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~ 171 (261)
+++.+...+++..++|+|++.
T Consensus 255 ~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 255 LIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHcCCCCCEEEEecCC
Confidence 999999999999999999976
No 27
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.87 E-value=1.2e-22 Score=173.42 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=104.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCC----
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGN---- 76 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 76 (261)
+|+|+|||+||||+|+|||..||+.| +|||+||+|++. ++..+|+.+......... ..+++.....+.
T Consensus 19 ~~~sgkGGvGKTt~a~~lA~~la~~g--~~vllid~D~~~-~l~~~l~~~~~~~~~~v~-----~~~~L~~~~id~~~~~ 90 (334)
T 3iqw_A 19 IFVGGKGGVGKTTTSCSLAIQLAKVR--RSVLLLSTDPAH-NLSDAFSQKFGKEARLVE-----GFDNLYAMEIDPNGSM 90 (334)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTSS--SCEEEEECCSSC-HHHHHHTSCCCSSCEECT-----TCSSEEEEECCC----
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhCC--CcEEEEECCCCC-ChhHHhccccCCCceeec-----CCCCceeeecCHHHHH
Confidence 47899999999999999999999999 999999999986 677788764321110000 001111111000
Q ss_pred ------------------CcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-----------------
Q psy14655 77 ------------------LITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT----------------- 121 (261)
Q Consensus 77 ------------------~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~----------------- 121 (261)
..........++......+.++.+.+...+||+|||||||.-...
T Consensus 91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~~~l~~~~ 170 (334)
T 3iqw_A 91 QDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVS 170 (334)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC--------
T ss_pred HHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001122333333444444444479999999999921100
Q ss_pred ------------------------------------------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 122 ------------------------------------------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 122 ------------------------------------------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
....+.....+.+++|+.|+..++..+.++++.+.+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~g 250 (334)
T 3iqw_A 171 QLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYG 250 (334)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHHHHHHCC
Confidence 00111111135799999999999999999999999999
Q ss_pred CCeEEEEEcCCC
Q psy14655 160 IPVAGLVMNMNS 171 (261)
Q Consensus 160 ~~~~giv~N~~~ 171 (261)
++..|+|+|++.
T Consensus 251 i~v~gvVvN~~~ 262 (334)
T 3iqw_A 251 IDTHCIVVNQLL 262 (334)
T ss_dssp CCEEEEEEEEEC
T ss_pred CCccEEEECCCc
Confidence 999999999966
No 28
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.87 E-value=3.1e-22 Score=171.18 Aligned_cols=165 Identities=22% Similarity=0.220 Sum_probs=106.6
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCC----CcCCccc----c---ccc--c
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL----NKDNLMI----P---LVN--Y 67 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~----~~~~~~~----~---~~~--~ 67 (261)
+|+|+||||||||+|+|||..||+.| +||++||+|++ +++..+|+.+..... ...+... + ... .
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G--~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 98 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR--SSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTE 98 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS--SCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHHHHHH
Confidence 47899999999999999999999999 99999999999 678888887521100 0011100 0 000 0
Q ss_pred C-----ce-eecCCCCcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCC-CC------hhH------------
Q psy14655 68 G-----VK-CLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPG-TG------DTH------------ 122 (261)
Q Consensus 68 ~-----l~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~-~~------~~~------------ 122 (261)
+ +. ++|.. . ..-...+++......+.++++.+...+||||||||||. .. +..
T Consensus 99 ~~~~~~l~~~l~~~--l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~~~~ 175 (329)
T 2woo_A 99 QADQQNPNNPLSGM--M-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLS 175 (329)
T ss_dssp TC--------CCHH--H-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHHTSC
T ss_pred HHhhhhHHHHhhHH--H-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11 11100 0 00011123333334456666666546899999999993 21 000
Q ss_pred ------HHH-------------------------------hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEE
Q psy14655 123 ------LSL-------------------------------IQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGL 165 (261)
Q Consensus 123 ------~~~-------------------------------~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gi 165 (261)
... +.....+.+++|+.|+..++..+.++++.++..+++..|+
T Consensus 176 ~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gv 255 (329)
T 2woo_A 176 SRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTHNI 255 (329)
T ss_dssp SSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEE
Confidence 000 0000124799999999999999999999999999999999
Q ss_pred EEcCCC
Q psy14655 166 VMNMNS 171 (261)
Q Consensus 166 v~N~~~ 171 (261)
|+|++.
T Consensus 256 VvN~~~ 261 (329)
T 2woo_A 256 VVNQLL 261 (329)
T ss_dssp EEEEEC
T ss_pred EEeCCc
Confidence 999976
No 29
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.85 E-value=2e-22 Score=172.96 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=95.6
Q ss_pred CcccCCCCCcHHHHHHHHHHHHH--hcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeec-----
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMK--ICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLS----- 73 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la--~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----- 73 (261)
+|+|+|||+||||+|+|||..+| +.| +|||+||+|++. ++..+|+.+......... ..+++....
T Consensus 21 ~~~~gkGGvGKTt~a~~lA~~la~~~~g--~~vllid~D~~~-~l~~~~~~~~~~~~~~v~-----~~~~L~~~~id~~~ 92 (348)
T 3io3_A 21 IFVGGKGGVGKTTTSSSVAVQLALAQPN--EQFLLISTDPAH-NLSDAFCQKFGKDARKVE-----GLPNLSCMEIDPEA 92 (348)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSC-HHHHHHTSCCCSSCEEET-----TEEEEEEEECCC--
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCC-ChHHHhccccCCCceecc-----CCCCceEEeeCHHH
Confidence 47889999999999999999999 899 999999999875 678888865321110000 000111110
Q ss_pred -------------------CCCCcccchhhhhhchHHHHHHHHHHHHhcc------------CCCCEEEEeCCCCCChhH
Q psy14655 74 -------------------MGNLITEKSAAIWRGLMVMQALNKLTVQVQW------------GPCDILFIDTPPGTGDTH 122 (261)
Q Consensus 74 -------------------~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~------------~~yd~IiiD~~~~~~~~~ 122 (261)
..... .......++......+.++++.++. .+||+|||||||.-+...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLr 171 (348)
T 3io3_A 93 AMSDLQQQASQYNNDPNDPLKSMM-SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLR 171 (348)
T ss_dssp ----------------------------------------------------------------CCEEEEECSSHHHHHH
T ss_pred HHHHHHHHHHhhcccccccHhHHh-HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHHHH
Confidence 00000 0000011222222345555555552 289999999998321100
Q ss_pred ---------------------------------------------------HHHhhhcCCCeEEEEeCCCcchHHHHHHH
Q psy14655 123 ---------------------------------------------------LSLIQNLFIDTAIIITIPDTMSLQVAQRG 151 (261)
Q Consensus 123 ---------------------------------------------------~~~~~~~~ad~viiv~~~~~~s~~~~~~~ 151 (261)
...+.....+.+++|+.|+..++..+.++
T Consensus 172 lL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~ 251 (348)
T 3io3_A 172 FLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETERM 251 (348)
T ss_dssp HTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHHHH
Confidence 01111111357999999999999999999
Q ss_pred HHHHHhCCCCeEEEEEcCCCC
Q psy14655 152 YTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 152 ~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.+.+.+++..|+|+||+..
T Consensus 252 ~~~L~~~gi~v~gvVvN~~~~ 272 (348)
T 3io3_A 252 IQELMSYNMDVNSIVVNQLLF 272 (348)
T ss_dssp HHHHHHTTCCCCEEEEEEECC
T ss_pred HHHHHHCCCCccEEEEcCCcc
Confidence 999999999999999999764
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.84 E-value=3.3e-21 Score=155.94 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=99.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccc-cCCCC-CCC-CCc-CCccccccccCceeecCCC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPIL-MNLPD-TPL-LNK-DNLMIPLVNYGVKCLSMGN 76 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~-~~~~~-~~~-~~~-~~~~~~~~~~~l~~~~~~~ 76 (261)
+|+|+|||+||||+|.|||.+|+++| +||+++| ||.+..... .+... ... +.. .....+....+...++..
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEP- 79 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT--CCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESSC-
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCCC-
Confidence 47899999999999999999999999 9999965 554322110 00000 000 000 000000000011111110
Q ss_pred CcccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh------HHHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 77 LITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT------HLSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~------~~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
..................+.+.++.++ ++||||||||||+.+.. ........ .+.+++|+.++..++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~-~~~vi~v~~~~~~~~~~~~~ 157 (224)
T 1byi_A 80 TSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQE-QLPVILVVGVKLGCINHAML 157 (224)
T ss_dssp SCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHH-TCCEEEEEECSTTHHHHHHH
T ss_pred CCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHh-CCCEEEEecCCCCcHHHHHH
Confidence 000000000001123456888888888 89999999999988632 11222210 23588899899999999999
Q ss_pred HHHHHHhCCCCeEEEEEcCCC
Q psy14655 151 GYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~~~ 171 (261)
.++.+++.+.++.|+|+|+++
T Consensus 158 ~i~~l~~~~~~i~gvvlN~~~ 178 (224)
T 1byi_A 158 TAQVIQHAGLTLAGWVANDVT 178 (224)
T ss_dssp HHHHHHHTTCCEEEEEEECCS
T ss_pred HHHHHHHCCCcEEEEEEeCCC
Confidence 999998888999999999965
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.80 E-value=1.9e-19 Score=165.35 Aligned_cols=163 Identities=14% Similarity=0.173 Sum_probs=107.4
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCC-----
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMG----- 75 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----- 75 (261)
+|+|+|||+||||+|+|||..+|++| +|||+||+|++ +++..+|+.+......... ..+++.....+
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G--~rVLlvd~D~~-~~l~~~l~~~~~~~~~~v~-----~~~~l~~~~~d~~~~~ 82 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQG--KRVLLVSTDPA-SNVGQVFSQTIGNTIQAIA-----SVPGLSALEIDPQAAA 82 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCTT-CCHHHHTTSCCCSSCEECT-----TSTTEEEEECCHHHHH
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCC--CcEEEEECCCC-cCHHHHhCCcccCCCceec-----cchhhhhccCCHHHHH
Confidence 37899999999999999999999999 99999999996 6888999886432211100 01111111100
Q ss_pred ------------CCcccc--hhh-------hhhchHHHHHHHHHHH--HhccCCCCEEEEeCCCCCChhH----------
Q psy14655 76 ------------NLITEK--SAA-------IWRGLMVMQALNKLTV--QVQWGPCDILFIDTPPGTGDTH---------- 122 (261)
Q Consensus 76 ------------~~~~~~--~~~-------~~~~~~~~~~l~~~l~--~l~~~~yd~IiiD~~~~~~~~~---------- 122 (261)
...+.. ... ........+.+.++++ .++ .+||+|||||||+.....
T Consensus 83 ~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-~~yD~VIiDt~P~~~~lrll~lP~~~~~ 161 (589)
T 1ihu_A 83 QQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-TRFDHIIFDTAPTGHTIRLLQLPGAWSS 161 (589)
T ss_dssp HHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-HHCSEEEESSCCCHHHHHHHHCGGGGTC
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-ccCCEEEECCCCchhHHHHHHhHHHHHH
Confidence 000000 000 0011122345667776 555 789999999998532100
Q ss_pred ----------------------------HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 123 ----------------------------LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 123 ----------------------------~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
...+.....+.+++|+.|+..++..+.++++.+...+++..|+|+|++..
T Consensus 162 ~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 162 FIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp CC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred HHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 00011100236999999999999999999999999999999999999653
No 32
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.78 E-value=1.7e-18 Score=149.56 Aligned_cols=158 Identities=13% Similarity=0.144 Sum_probs=103.8
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceee--------
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCL-------- 72 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 72 (261)
+|+++|||+||||+|+|+|..+|+.| +|||+||+ ++. +++.+|+......... . .+++..+
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~~g--~~vllvd~-~~~-~l~~~~~~~~~~~~~~--v-----~~~L~~~eid~~~~~ 73 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLASQG--KRVLLAGL-AEP-VLPLLLEQTLTPDPQQ--I-----APNLEVVQFQSSVLL 73 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHHTT--CCEEEEEC-SCS-HHHHHHTSCCCSSCEE--E-----ETTEEEEECCHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC--CCeEEEeC-CCC-ChHHhhCCCCCCCccc--c-----cccccccccCHHHHH
Confidence 37899999999999999999999999 99999999 775 7788888763221100 0 0111111
Q ss_pred ---------------cCCCCc--ccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--------------
Q psy14655 73 ---------------SMGNLI--TEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-------------- 121 (261)
Q Consensus 73 ---------------~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-------------- 121 (261)
+..... ........++......+.++.+.+...+||+|||||||.-+..
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~ 153 (374)
T 3igf_A 74 ERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVR 153 (374)
T ss_dssp HHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHH
Confidence 111110 0111111223333334445554444478999999999932100
Q ss_pred ---------------------------------------------------HHHHhhhcCCCeEEEEeCCCcchHHHHHH
Q psy14655 122 ---------------------------------------------------HLSLIQNLFIDTAIIITIPDTMSLQVAQR 150 (261)
Q Consensus 122 ---------------------------------------------------~~~~~~~~~ad~viiv~~~~~~s~~~~~~ 150 (261)
....+.......+++|+.|+..++.++.+
T Consensus 154 ~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r 233 (374)
T 3igf_A 154 RFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRY 233 (374)
T ss_dssp HTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHH
T ss_pred HHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHH
Confidence 01111111124689999999999999999
Q ss_pred HHHHHHhCCCCeEEEEEcC
Q psy14655 151 GYTMFKKLNIPVAGLVMNM 169 (261)
Q Consensus 151 ~~~~l~~~~~~~~giv~N~ 169 (261)
.++.+.+.+++..|+|+||
T Consensus 234 ~~~~L~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 234 LWGSAQQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHcCCCccEEEEcC
Confidence 9999999999999999999
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.77 E-value=4.3e-19 Score=163.00 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=98.0
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCc--CCccccccccCceeecCC-CC
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNK--DNLMIPLVNYGVKCLSMG-NL 77 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~ 77 (261)
+|+++|||+||||+|+|||..|++.| ++|++||+|++. ++..+|+.... .+.. .+...........+++.. ..
T Consensus 330 ~~~~~~~g~Gktt~a~~lA~~l~~~g--~~vllvD~Dp~~-~l~~~l~~~~~-~l~~~~~~~~~~~~~~~~~v~~~~~~~ 405 (589)
T 1ihu_A 330 IMLMGKGGVGKTTMAAAIAVRLADMG--FDVHLTTSDPAA-HLSMTLNGSLN-NLQVSRIDPHEETERYRQHVLETKGKE 405 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESCCC------------C-CEEEEECCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhhHHHHHHHHHHHCC--CcEEEEeCCCcc-cHhHHhcccCC-CceeeecchHHHHHHHHHHHHHhhhcc
Confidence 36899999999999999999999999 999999999995 57777766321 1110 000000000000111110 00
Q ss_pred cc-c-chh--hhh--hchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh-------------------------HHHHh
Q psy14655 78 IT-E-KSA--AIW--RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT-------------------------HLSLI 126 (261)
Q Consensus 78 ~~-~-~~~--~~~--~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~-------------------------~~~~~ 126 (261)
.. . ... ... +.......+..+.+.++..+||||||||||+.... ....+
T Consensus 406 l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~~~~l 485 (589)
T 1ihu_A 406 LDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLL 485 (589)
T ss_dssp CCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------CCHHHH
T ss_pred CChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHHHHHh
Confidence 00 0 000 000 11111223444444443357999999999983210 01111
Q ss_pred hhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 127 QNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 127 ~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
....+|.+++|+.|+..++..+.++++.+...+++..++|+|++..
T Consensus 486 ~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~ 531 (589)
T 1ihu_A 486 QDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLS 531 (589)
T ss_dssp HCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred cCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 1112689999999999999999999999999999999999999764
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.64 E-value=4.8e-16 Score=136.93 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=92.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
.++||+||||++.+||.+|+++ | ++|++||+|++.+...+.+. ......+++++|.+....
T Consensus 106 vG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~D~~r~~a~~ql~-------------~~~~~~~l~v~~~~~~~d--- 167 (433)
T 2xxa_A 106 AGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSADVYRPAAIKQLE-------------TLAEQVGVDFFPSDVGQK--- 167 (433)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEECCCSSTTHHHHHH-------------HHHHHHTCEECCCCSSSC---
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEecCCCCccHHHHHH-------------hhcccCCeeEEeCCCCCC---
Confidence 3699999999999999999998 9 99999999999876433211 011234677777654221
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--hHHHHh----hhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--THLSLI----QNLFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--~~~~~~----~~~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
....+.+.++.++..+||+|||||||..+. .....+ ....+|.+++|+.+... .++...++.+.
T Consensus 168 --------p~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g--~~~~~~~~~f~ 237 (433)
T 2xxa_A 168 --------PVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--QDAANTAKAFN 237 (433)
T ss_dssp --------HHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBC--TTHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchh--HHHHHHHHHHh
Confidence 112235666666536899999999986642 222211 11227899998886543 33344444444
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
. .+++.|+|+|+++.
T Consensus 238 ~-~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 238 E-ALPLTGVVLTKVDG 252 (433)
T ss_dssp H-HSCCCCEEEECTTS
T ss_pred c-cCCCeEEEEecCCC
Confidence 3 45678999999764
No 35
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.60 E-value=5.9e-16 Score=127.83 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=36.9
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
+++++|||+||||++.+||..++ .| ++|++||+|+|.+.+
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g--~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DN--YKVAYVNLDTGVKEL 56 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TT--SCEEEEECCSSCSCC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CC--CeEEEEeCCCCcccc
Confidence 36899999999999999999999 99 999999999998654
No 36
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.59 E-value=2.5e-15 Score=126.23 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=91.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
+.+++|+||||++.+||..++..| .+|+++|+|++++...+.+.. .....++.+++.....
T Consensus 103 i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~-------------~~~~~~v~v~~~~~~~---- 163 (297)
T 1j8m_F 103 LVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQ-------------LGQQIGVPVYGEPGEK---- 163 (297)
T ss_dssp EECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHH-------------HHHHHTCCEECCTTCC----
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHH-------------HhccCCeEEEecCCCC----
Confidence 357999999999999999999999 999999999998754332210 0112355666632111
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hh--HHH----HhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DT--HLS----LIQNLFIDTAIIITIPDTMSLQVAQRGYTM 154 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~--~~~----~~~~~~ad~viiv~~~~~~s~~~~~~~~~~ 154 (261)
.....+.+.++.++.++||+|||||||... .. ... ......+|.+++|+.+... ..+...++.
T Consensus 164 -------~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~ 234 (297)
T 1j8m_F 164 -------DVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASK 234 (297)
T ss_dssp -------CHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHH
Confidence 111223456666644789999999998776 21 110 0112238999999987542 333444455
Q ss_pred HHhCCCCeEEEEEcCCC
Q psy14655 155 FKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 155 l~~~~~~~~giv~N~~~ 171 (261)
+.. ..++.|+|+|+++
T Consensus 235 ~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 235 FNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp HHH-TCTTEEEEEECGG
T ss_pred HHh-hCCCCEEEEeCCC
Confidence 544 4677999999955
No 37
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.51 E-value=3e-14 Score=119.73 Aligned_cols=138 Identities=20% Similarity=0.168 Sum_probs=88.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+++|+||||++.+||..++..| .+|+++|+|++.+...+.+.. .....++.+++.+....+
T Consensus 105 g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~-------------~~~~~~l~~~~~~~~~~p---- 165 (295)
T 1ls1_A 105 GLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRL-------------LGEKVGVPVLEVMDGESP---- 165 (295)
T ss_dssp CCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHH-------------HHHHHTCCEEECCTTCCH----
T ss_pred CCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHH-------------hcccCCeEEEEcCCCCCH----
Confidence 7999999999999999999999 999999999998654322210 012346777775542111
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--hHHHHh----hhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--THLSLI----QNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL 158 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--~~~~~~----~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 158 (261)
...++..++.+...+||+|||||||..+. .....+ ....+|.+++|+.+.. . ..+...++.+..
T Consensus 166 -------~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~~~~~~~- 235 (295)
T 1ls1_A 166 -------ESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSVARAFDE- 235 (295)
T ss_dssp -------HHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHHHHHHhh-
Confidence 01134555555326899999999987643 212211 1112788888888653 2 333333444433
Q ss_pred CCCeEEEEEcCCC
Q psy14655 159 NIPVAGLVMNMNS 171 (261)
Q Consensus 159 ~~~~~giv~N~~~ 171 (261)
..++.|+|+|+++
T Consensus 236 ~~~i~givlnk~d 248 (295)
T 1ls1_A 236 KVGVTGLVLTKLD 248 (295)
T ss_dssp HTCCCEEEEECGG
T ss_pred cCCCCEEEEECCC
Confidence 3567899999955
No 38
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.49 E-value=1.9e-13 Score=115.97 Aligned_cols=140 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcc----cccCCCCCCCCCcCCccccccccCceeecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIP----ILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNL 77 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 77 (261)
|+|. +|+||||++.+||..++..| .+|+++|+|++++... .+.. .....++.++|.+..
T Consensus 110 ivG~-~G~GKTT~~~~LA~~l~~~g--~kVllid~D~~r~~a~~ql~~~~~--------------~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 110 LVGV-NGTGKTTSLAKMANYYAELG--YKVLIAAADTFRAGATQQLEEWIK--------------TRLNNKVDLVKANKL 172 (320)
T ss_dssp EESS-TTSSHHHHHHHHHHHHHHTT--CCEEEEECCCSCHHHHHHHHHHHT--------------TTSCTTEEEECCSST
T ss_pred EECC-CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCcchhHHHHHHHHHh--------------ccccCCceEEeCCCC
Confidence 4554 99999999999999999999 9999999999875321 1111 001346778865542
Q ss_pred cccchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--HHHH-------hh---hcCCCeEEEEeCCCcchH
Q psy14655 78 ITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT--HLSL-------IQ---NLFIDTAIIITIPDTMSL 145 (261)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~--~~~~-------~~---~~~ad~viiv~~~~~~s~ 145 (261)
...... .....+...++ ++||+|||||||..... .... +. ...+|.+++|+.+.. ..
T Consensus 173 ~~~p~~---------~~~~~l~~~~~-~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~~ 241 (320)
T 1zu4_A 173 NADPAS---------VVFDAIKKAKE-QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-GQ 241 (320)
T ss_dssp TCCHHH---------HHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-TH
T ss_pred CCCHHH---------HHHHHHHHHHh-cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-cH
Confidence 211110 11223333345 89999999999977532 1111 10 112788899988663 33
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 146 QVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
..+.. ++.+.. ..++.|+|+|+++
T Consensus 242 ~~l~~-~~~~~~-~~~i~GvVltk~d 265 (320)
T 1zu4_A 242 NGVIQ-AEEFSK-VADVSGIILTKMD 265 (320)
T ss_dssp HHHHH-HHHHTT-TSCCCEEEEECGG
T ss_pred HHHHH-HHHHhh-cCCCcEEEEeCCC
Confidence 33333 232322 3567999999955
No 39
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.47 E-value=5.5e-14 Score=123.11 Aligned_cols=140 Identities=21% Similarity=0.148 Sum_probs=90.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
.+++|+||||++.+||..++..| .+|+++|+|++.+...+.+... ....++++++.+....
T Consensus 104 ~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~v~~~~~~~~---- 164 (425)
T 2ffh_A 104 VGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMDGES---- 164 (425)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCSSCHHHHHHHHHH-------------HHHHTCCEEECCTTCC----
T ss_pred ECCCCCCHHHHHHHHHHHHHHcC--CeEEEeeccccCchhHHHHHHh-------------cccCCccEEecCCCCC----
Confidence 37899999999999999999999 9999999999986543322110 1223667777654211
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--HHH----HhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHh
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT--HLS----LIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKK 157 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~--~~~----~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 157 (261)
....+.+.++.++..+||+|||||||..... ... ......+|.+++|+++... .++...++.+..
T Consensus 165 -------p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~ 235 (425)
T 2ffh_A 165 -------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE 235 (425)
T ss_dssp -------HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh
Confidence 0112345666653378999999999876421 111 1111227899999986532 344444444443
Q ss_pred CCCCeEEEEEcCCCC
Q psy14655 158 LNIPVAGLVMNMNSV 172 (261)
Q Consensus 158 ~~~~~~giv~N~~~~ 172 (261)
.+++.|+|+|+++.
T Consensus 236 -~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 236 -KVGVTGLVLTKLDG 249 (425)
T ss_dssp -HTCCCEEEEESGGG
T ss_pred -cCCceEEEEeCcCC
Confidence 35678999999653
No 40
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.41 E-value=1.7e-13 Score=110.77 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=96.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccc-------cccccCceeecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMI-------PLVNYGVKCLSM 74 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~ 74 (261)
|++...|+||||++++|+..|+++| ++|.+.- |....... .. ..+.+.+... +....+...+..
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G--~~V~~~K--Pv~~g~~~---~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 79 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN--IKSLCLK--PVASGQSQ---FS--ELCEDVESILNAYKHKFTAAEINLISFNQ 79 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT--CCEEEEC--SEEESBCS---SS--SSBHHHHHHHHHTTTSSCHHHHCSEEESS
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC--CeeEEec--ceeecCcc---CC--CCCChHHHHHHhcCCCCChhhEEEEEECC
Confidence 6788999999999999999999999 9999953 22111100 00 0000000000 000011111111
Q ss_pred CCCcccchhhhhhchHHHHHHHHHHHH-hccCCCCEEEEeCCCCCChh------HHHHhhhcCCCeEEEEeCCCcchHHH
Q psy14655 75 GNLITEKSAAIWRGLMVMQALNKLTVQ-VQWGPCDILFIDTPPGTGDT------HLSLIQNLFIDTAIIITIPDTMSLQV 147 (261)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~yd~IiiD~~~~~~~~------~~~~~~~~~ad~viiv~~~~~~s~~~ 147 (261)
+..+.............+.+.+.++. +. ++||+||||+++|+... ........ ..-+|+|+.+...++..
T Consensus 80 -p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l-~~pviLV~~~~~~~i~~ 156 (228)
T 3of5_A 80 -AVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL-QIPVLLVSAIKVGCINH 156 (228)
T ss_dssp -SSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH-TCCEEEEEECSTTHHHH
T ss_pred -CCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHc-CCCEEEEEcCCcchHHH
Confidence 11100000010111234557788887 77 89999999999876421 12222211 45589999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 148 AQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 148 ~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
+...++.+.+.+.++.|+|+|+++
T Consensus 157 ~~~~~~~l~~~~~~i~GvIlN~~~ 180 (228)
T 3of5_A 157 TLLTINELNRHNIKLAGWIANCND 180 (228)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECC
T ss_pred HHHHHHHHHhCCCcEEEEEEECcC
Confidence 999999999999999999999954
No 41
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.40 E-value=1.1e-12 Score=115.02 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=86.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
+.+.+|+||||++.+||.+|+++| ++|++||+|++.+.....+.. -....++.+.+.....
T Consensus 105 ivG~~G~GKTTt~~kLA~~l~~~G--~kVllv~~D~~R~aa~eqL~~-------------~~~~~gvpv~~~~~~~---- 165 (443)
T 3dm5_A 105 MVGIQGSGKTTTVAKLARYFQKRG--YKVGVVCSDTWRPGAYHQLRQ-------------LLDRYHIEVFGNPQEK---- 165 (443)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCCSSTHHHHHHHH-------------HHGGGTCEEECCTTCC----
T ss_pred EECcCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCcchhHHHHHHH-------------HHHhcCCcEEecCCCC----
Confidence 445699999999999999999999 999999999987643211110 0011233333322111
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--H----HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT--H----LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~--~----~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
.....+.+.++.++.++||+|||||++..... . ........+|.+++|+++... .++....+.+.
T Consensus 166 -------dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g--q~a~~~a~~f~ 236 (443)
T 3dm5_A 166 -------DAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG--QQAYNQALAFK 236 (443)
T ss_dssp -------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc--hhHHHHHHHHH
Confidence 11223445566665367999999999754311 1 111122227899999986542 23334445554
Q ss_pred hCCCCeEEEEEcCCCC
Q psy14655 157 KLNIPVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~~~~giv~N~~~~ 172 (261)
+ ..++.|+|+|+.+.
T Consensus 237 ~-~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 237 E-ATPIGSIIVTKLDG 251 (443)
T ss_dssp H-SCTTEEEEEECCSS
T ss_pred h-hCCCeEEEEECCCC
Confidence 3 34668999999765
No 42
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.37 E-value=1.9e-12 Score=114.03 Aligned_cols=138 Identities=16% Similarity=0.119 Sum_probs=85.9
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCC-Ccccch
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGN-LITEKS 82 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 82 (261)
.+.+|+||||++.+||..++++| ++|++||+|++.+.....+.. .....++.+++.+. ...+ .
T Consensus 105 vG~~GvGKTTla~~La~~l~~~G--~kVllv~~D~~r~~a~~qL~~-------------~~~~~gv~v~~~~~~~~dp-~ 168 (432)
T 2v3c_C 105 VGIQGSGKTTTAAKLARYIQKRG--LKPALIAADTYRPAAYEQLKQ-------------LAEKIHVPIYGDETRTKSP-V 168 (432)
T ss_dssp ECCSSSSTTHHHHHHHHHHHHHH--CCEEEECCSCCCTTGGGSSHH-------------HHHHSSCCEECCSSSCCSS-S
T ss_pred ECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeccccCchHHHHHHH-------------hhhccCcceEecCCCCCCH-H
Confidence 34699999999999999999999 999999999998765322110 01223566666441 1110 0
Q ss_pred hhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh--HHHH----hhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q psy14655 83 AAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT--HLSL----IQNLFIDTAIIITIPDTMSLQVAQRGYTMFK 156 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~--~~~~----~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~ 156 (261)
. .+.+.++.+ .+||+||||||+..... .... .....+|.+++|+.+.... ++....+.+.
T Consensus 169 ~----------i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~~ 234 (432)
T 2v3c_C 169 D----------IVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAFK 234 (432)
T ss_dssp T----------THHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHHH
T ss_pred H----------HHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHHh
Confidence 0 123344444 68999999999876421 1111 1111278999998754432 2333344444
Q ss_pred hCCC-CeEEEEEcCCCC
Q psy14655 157 KLNI-PVAGLVMNMNSV 172 (261)
Q Consensus 157 ~~~~-~~~giv~N~~~~ 172 (261)
. .. ++.++|+|+.+.
T Consensus 235 ~-~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 235 E-AVGEIGSIIVTKLDG 250 (432)
T ss_dssp T-TSCSCEEEEEECSSS
T ss_pred h-cccCCeEEEEeCCCC
Confidence 3 35 679999999764
No 43
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.31 E-value=2.6e-12 Score=114.86 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=84.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+.+|+||||++.+||.++++.| ++|++||+|++.+....++... ....++.+++.+....
T Consensus 108 G~~GvGKTTl~~kLA~~l~~~G--~kVllVd~D~~r~aa~~qL~~~-------------~~~~~i~v~~~~~~~d----- 167 (504)
T 2j37_W 108 GLQGSGKTTTCSKLAYYYQRKG--WKTCLICADTFRAGAFDQLKQN-------------ATKARIPFYGSYTEMD----- 167 (504)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSSHHHHHHHHH-------------HHHHTCCEEECCCCSC-----
T ss_pred CCCCCCHHHHHHHHHHHHHhCC--CeEEEEeccccchhHHHHHHHH-------------hhccCceEEccCCCCC-----
Confidence 5689999999999999999999 9999999999987543322110 0112344444321110
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh--hHH-H---HhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD--THL-S---LIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL 158 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~--~~~-~---~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 158 (261)
....+.+.++.+...+||+||||||+.... ... . ......+|.+++|+++.... . .....+.+.+.
T Consensus 168 ------p~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~-~~~~a~~~~~~ 239 (504)
T 2j37_W 168 ------PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A-CEAQAKAFKDK 239 (504)
T ss_dssp ------HHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T-HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c-HHHHHHHHHhh
Confidence 111223445554447899999999987642 111 1 11111389999999865531 1 23334444432
Q ss_pred CCCeEEEEEcCCCC
Q psy14655 159 NIPVAGLVMNMNSV 172 (261)
Q Consensus 159 ~~~~~giv~N~~~~ 172 (261)
.++.++|+|+.+.
T Consensus 240 -~~i~gvVlNK~D~ 252 (504)
T 2j37_W 240 -VDVASVIVTKLDG 252 (504)
T ss_dssp -HCCCCEEEECTTS
T ss_pred -cCceEEEEeCCcc
Confidence 4556899999764
No 44
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.26 E-value=5.6e-11 Score=97.15 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=96.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccc----cccCceeecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPL----VNYGVKCLSMGNL 77 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 77 (261)
|++...|+|||++++.|+.+|+++| ++|..+-. ....... +. .+...+... ...+. +.....
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G--~~V~~fKP--v~~g~~~----~~----~D~~~~~~~~g~~~~~~~--~~~~~p 96 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG--IDVAVCKP--VQTGTAR----GD----DDLAEVGRLAGVTQLAGL--ARYPQP 96 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT--CCEEEEEE--EECCGGG----TC----CHHHHHHHHHCCCEEEEE--EECSSS
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEee--eecCCCC----CC----HHHHHHHHHcCCCCCCCC--eeECCC
Confidence 6788899999999999999999999 99999752 1110000 00 000000000 00111 111111
Q ss_pred cccchhhhhhc--hHHHHHHHHHHHHhccCCCCEEEEeCCCCCCh-------hHHHHhhhcCCCeEEEEeCCCcchHHHH
Q psy14655 78 ITEKSAAIWRG--LMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-------THLSLIQNLFIDTAIIITIPDTMSLQVA 148 (261)
Q Consensus 78 ~~~~~~~~~~~--~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~-------~~~~~~~~~~ad~viiv~~~~~~s~~~~ 148 (261)
..+.......+ ....+.+.+.++.+. ++||+||||+++|+.. ........ ...-||+|+.++..++..+
T Consensus 97 ~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~-l~~pVILV~~~~~g~i~~~ 174 (251)
T 3fgn_A 97 MAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVD-VAAAALVVVTADLGTLNHT 174 (251)
T ss_dssp SCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHH-TTCEEEEEECSSTTHHHHH
T ss_pred CChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHH-cCCCEEEEEcCCCccHHHH
Confidence 11111110111 123456888888888 8999999999988731 11222222 1567999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 149 QRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 149 ~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
...++.+...+.++.|+|+|++.
T Consensus 175 ~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 175 KLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEEECCC
Confidence 99999998889999999999853
No 45
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.25 E-value=1.3e-11 Score=108.33 Aligned_cols=142 Identities=20% Similarity=0.165 Sum_probs=84.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
++.+.+|+||||++.+||.+++..| ++|+++|+|.+.+.....+... ....++.+.+.....
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~-------------~~~~gv~~~~~~~~~--- 162 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQL-------------GNQIGVQVYGEPNNQ--- 162 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHH-------------HHTTTCCEECCTTCS---
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHH-------------HHhcCCceeeccccC---
Confidence 3457899999999999999999999 9999999998765321111000 001122222221111
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC----h----hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG----D----THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT 153 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~----~----~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~ 153 (261)
.........++.+..++||+||||||+... . ...........|.+++|+++... .++....+
T Consensus 163 --------dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a~~~a~ 232 (433)
T 3kl4_A 163 --------NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKAYDLAS 232 (433)
T ss_dssp --------CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGGHHHHH
T ss_pred --------CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHHHHHHH
Confidence 111223455666655789999999997533 1 11122222226889999886542 23334445
Q ss_pred HHHhCCCCeEEEEEcCCCC
Q psy14655 154 MFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 154 ~l~~~~~~~~giv~N~~~~ 172 (261)
.+.+ ..+..++|+|+.+.
T Consensus 233 ~f~~-~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 233 RFHQ-ASPIGSVIITKMDG 250 (433)
T ss_dssp HHHH-HCSSEEEEEECGGG
T ss_pred HHhc-ccCCcEEEEecccc
Confidence 5543 23458999999664
No 46
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.24 E-value=1.2e-10 Score=94.77 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=96.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCcc----cc----ccccCceeec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM----IP----LVNYGVKCLS 73 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~l~~~~ 73 (261)
|++...|+|||++++.|+..|+++| ++|.++- |........-+.+. +...+ .. ....++..+-
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G--~~V~~fK--Pv~~g~~~~~~~~~-----D~~~~~~~~~~~~~g~~~~~~~p~~ 96 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG--VKTILLK--PIETGVNDAINHSS-----DAHLFLQDNRLLDRSLTLKDISFYR 96 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEC--CEECSCCTTTCCCS-----HHHHHHHHHHTTCTTCCHHHHCCEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC--CceEEEe--eeecCCcccCCCCc-----hHHHHHHHHHHHhCCCChHHeeeEE
Confidence 6789999999999999999999999 9999985 22111110000000 00000 00 0000111111
Q ss_pred CCCCcccchhhhhhc---hHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh------HHHHhhhcCCCeEEEEeCCCcch
Q psy14655 74 MGNLITEKSAAIWRG---LMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT------HLSLIQNLFIDTAIIITIPDTMS 144 (261)
Q Consensus 74 ~~~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~------~~~~~~~~~ad~viiv~~~~~~s 144 (261)
......+.......+ ....+.+.+.++.+. .+||+||||+++|+... ...+.... ..-||+|+.+...+
T Consensus 97 ~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l-~~pVILV~~~~lg~ 174 (242)
T 3qxc_A 97 YHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKL-KAKMLLISHDNLGL 174 (242)
T ss_dssp CSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH-TCEEEEEECCSTTH
T ss_pred ECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHc-CCCEEEEEcCCCcH
Confidence 110110111100011 123456788888888 89999999999887431 11222221 45699999999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 145 LQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
+..+...++.++..+++ .|+|+|+++
T Consensus 175 i~~~~lt~~~l~~~g~~-~GvIlN~v~ 200 (242)
T 3qxc_A 175 INDCLLNDFLLKSHQLD-YKIAINLKG 200 (242)
T ss_dssp HHHHHHHHHHHHTSSSC-EEEEECCCT
T ss_pred HHHHHHHHHHHHhCCCC-EEEEEeCCC
Confidence 99999999999999999 999999965
No 47
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.15 E-value=1.7e-10 Score=99.39 Aligned_cols=146 Identities=18% Similarity=0.128 Sum_probs=80.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCcccc-ccccCceeecCCCCccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIP-LVNYGVKCLSMGNLITE 80 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 80 (261)
++.+++|+||||++.+|+..++..| ++|+++|+|++.+.....+ +.+...... ...+++.+.+......
T Consensus 83 ~i~G~~G~GKSTl~~~L~~~l~~~g--~kV~vi~~Dp~~~~~~g~~-------l~d~~~~~~~~~~~~~~i~~~~~~~~- 152 (355)
T 3p32_A 83 GITGVPGVGKSTAIEALGMHLIERG--HRVAVLAVDPSSTRTGGSI-------LGDKTRMARLAVHPNAYIRPSPTSGT- 152 (355)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEEC-----------------------CHHHHTCTTEEEECCC--CC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC--CceEEEecCCCCCcccchh-------ccchhhHHhhccCCCeeEEECCCCcc-
Confidence 4578899999999999999999999 9999999999975321100 001111111 1234555554332211
Q ss_pred chhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCC
Q psy14655 81 KSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNI 160 (261)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~ 160 (261)
.. ......++.+..+...+||++|+|||+ +.......... +|.+++|+.++..... ..+...+. +.
T Consensus 153 ~~-------~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~~~~--aD~vl~V~d~~~~~~~--~~l~~~~~--~~ 218 (355)
T 3p32_A 153 LG-------GVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAVANM--VDTFVLLTLARTGDQL--QGIKKGVL--EL 218 (355)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHHHTT--CSEEEEEEESSTTCTT--TTCCTTSG--GG
T ss_pred cc-------chhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHHHHh--CCEEEEEECCCCCccH--HHHHHhHh--hc
Confidence 00 111223333344444789999999985 66555555555 9999999987654321 11001111 12
Q ss_pred CeEEEEEcCCCC
Q psy14655 161 PVAGLVMNMNSV 172 (261)
Q Consensus 161 ~~~giv~N~~~~ 172 (261)
+ ..+|+|+++.
T Consensus 219 p-~ivVlNK~Dl 229 (355)
T 3p32_A 219 A-DIVVVNKADG 229 (355)
T ss_dssp C-SEEEEECCCG
T ss_pred C-CEEEEECCCC
Confidence 3 4689999663
No 48
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.10 E-value=3.1e-10 Score=95.51 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=79.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
|++. +|+||||++.+||..++..| .+|+++|+|.+.+.....+. .+ ....++.+++..... ..
T Consensus 109 ivG~-~GsGKTTl~~~LA~~l~~~g--~kV~lv~~D~~r~~a~eqL~----------~~---~~~~gl~~~~~~s~~-~~ 171 (306)
T 1vma_A 109 VVGV-NGTGKTTSCGKLAKMFVDEG--KSVVLAAADTFRAAAIEQLK----------IW---GERVGATVISHSEGA-DP 171 (306)
T ss_dssp EECC-TTSSHHHHHHHHHHHHHHTT--CCEEEEEECTTCHHHHHHHH----------HH---HHHHTCEEECCSTTC-CH
T ss_pred EEcC-CCChHHHHHHHHHHHHHhcC--CEEEEEccccccHHHHHHHH----------HH---HHHcCCcEEecCCcc-CH
Confidence 4555 89999999999999999998 99999999988643211000 00 011244455432211 00
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH--HH-------Hhh---hcCCCeEEEEeCCCcchHHHHH
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH--LS-------LIQ---NLFIDTAIIITIPDTMSLQVAQ 149 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~--~~-------~~~---~~~ad~viiv~~~~~~s~~~~~ 149 (261)
.. -....+...+. .+||+||+|+|+...... .. .+. ...+|.+++|+... .....+.
T Consensus 172 ~~---------v~~~al~~a~~-~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~~~~l~ 240 (306)
T 1vma_A 172 AA---------VAFDAVAHALA-RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TGQNGLV 240 (306)
T ss_dssp HH---------HHHHHHHHHHH-TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GHHHHHH
T ss_pred HH---------HHHHHHHHHHh-cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCHHHHH
Confidence 00 00112222344 899999999997543211 00 110 01167888988765 2233333
Q ss_pred HHHHHHHhCCCCeEEEEEcCCC
Q psy14655 150 RGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 150 ~~~~~l~~~~~~~~giv~N~~~ 171 (261)
. .+.+.+ ..++.|+|+|+.+
T Consensus 241 ~-a~~~~~-~~~i~gvVlTk~D 260 (306)
T 1vma_A 241 Q-AKIFKE-AVNVTGIILTKLD 260 (306)
T ss_dssp H-HHHHHH-HSCCCEEEEECGG
T ss_pred H-HHHHHh-cCCCCEEEEeCCC
Confidence 3 333333 2567899999955
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.05 E-value=2e-10 Score=96.35 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=76.3
Q ss_pred CCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchh
Q psy14655 5 SKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSA 83 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 83 (261)
+.+|+||||++.+||..++. .| ++|+++|+|++.+.....+.... ...++.+.+.. .
T Consensus 112 G~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~-------------~~~gl~~~~~~----~--- 169 (296)
T 2px0_A 112 GSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYA-------------ELLQAPLEVCY----T--- 169 (296)
T ss_dssp ESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHH-------------TTTTCCCCBCS----S---
T ss_pred CCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHH-------------HhcCCCeEecC----C---
Confidence 45899999999999999995 78 99999999998654321111000 00111111110 0
Q ss_pred hhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhH---HH---HhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHh
Q psy14655 84 AIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH---LS---LIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKK 157 (261)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~---~~---~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~ 157 (261)
...++..+..+ .+||+||+||++...... .. .+.....+.+++|+..+ .....+..+.+.+.
T Consensus 170 --------~~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~~~~~~~- 237 (296)
T 2px0_A 170 --------KEEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKHIVKRFS- 237 (296)
T ss_dssp --------HHHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHHHTTTTS-
T ss_pred --------HHHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHHHHHHHh-
Confidence 11244455543 689999999987553211 11 11111145667776433 23444555444443
Q ss_pred CCCCeEEEEEcCCCC
Q psy14655 158 LNIPVAGLVMNMNSV 172 (261)
Q Consensus 158 ~~~~~~giv~N~~~~ 172 (261)
.++..++|+|+.+.
T Consensus 238 -~l~~~giVltk~D~ 251 (296)
T 2px0_A 238 -SVPVNQYIFTKIDE 251 (296)
T ss_dssp -SSCCCEEEEECTTT
T ss_pred -cCCCCEEEEeCCCc
Confidence 34568899999653
No 50
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.91 E-value=8.3e-10 Score=88.12 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=37.7
Q ss_pred CcccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc
Q psy14655 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI 43 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~ 43 (261)
+|+++||||||||++.++|..++++| ++|+++|+|+|++..
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G--~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG--VRVMAGVVETHGRAE 49 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEECCCTTCHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC--CCEEEEEeCCCCChh
Confidence 37899999999999999999999999 999999999997543
No 51
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.64 E-value=1.3e-07 Score=80.87 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=71.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcc-cccCCCCCCCCCcCCccccccccCce--eecCCCCcc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIP-ILMNLPDTPLLNKDNLMIPLVNYGVK--CLSMGNLIT 79 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~ 79 (261)
+.+++|+||||+..+|+..++..| .+|.++|.|++.+... .+++.... . .. .. ..++.. ..|.+....
T Consensus 61 i~G~~g~GKSTl~~~l~~~~~~~~--~~v~v~~~d~~~~~~~~~il~d~~~--~--~~-~~--~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 61 VTGTPGAGKSTFLEAFGMLLIREG--LKVAVIAVDPSSPVTGGSILGDKTR--M--ND-LA--RAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-------------------CT-TT--TCTTEEEEEECC-----
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEeecCCcCCCCcceecccch--H--Hh-hc--cCCCceeecCccccccc
Confidence 456999999999999999999999 9999999999875321 11111100 0 00 00 001111 111111110
Q ss_pred cchhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC
Q psy14655 80 EKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN 159 (261)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~ 159 (261)
. ....+.+.+..+...+|+++|+|||+... ........ +|.+++|+.++.... ...+.... .+
T Consensus 132 g----------~~~~~~~~~~~~~~~~~~i~liDTpG~~~-~~~~~~~~--aD~vl~Vvd~~~~~~--~~~l~~~~--~~ 194 (341)
T 2p67_A 132 G----------ASQRARELMLLCEAAGYDVVIVETVGVGQ-SETEVARM--VDCFISLQIAGGGDD--LQGIKKGL--ME 194 (341)
T ss_dssp C----------HHHHHHHHHHHHHHTTCSEEEEEEECCTT-HHHHHHTT--CSEEEEEECC--------CCCCHHH--HH
T ss_pred h----------hHHHHHHHHHHhhccCCCEEEEeCCCccc-hHHHHHHh--CCEEEEEEeCCccHH--HHHHHHhh--hc
Confidence 0 01112222222223789999999986443 33334444 999999999764321 11000011 12
Q ss_pred CCeEEEEEcCCCC
Q psy14655 160 IPVAGLVMNMNSV 172 (261)
Q Consensus 160 ~~~~giv~N~~~~ 172 (261)
.+ ..+|+|+++.
T Consensus 195 ~p-~ivv~NK~Dl 206 (341)
T 2p67_A 195 VA-DLIVINKDDG 206 (341)
T ss_dssp HC-SEEEECCCCT
T ss_pred cc-CEEEEECCCC
Confidence 23 3489999764
No 52
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=1.8e-05 Score=67.05 Aligned_cols=138 Identities=15% Similarity=0.155 Sum_probs=76.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccchhh
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAA 84 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 84 (261)
+..|+||||+...||..+...+ .+|++++.|.........+.. ....-++.+++......+..
T Consensus 136 G~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~-------------~~~~~gv~~v~q~~~~~p~~-- 198 (328)
T 3e70_C 136 GFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEE-------------HAKRIGVKVIKHSYGADPAA-- 198 (328)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHH-------------HHHHTTCEEECCCTTCCHHH--
T ss_pred CCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHH-------------HHHHcCceEEeccccCCHHH--
Confidence 4579999999999999999998 999999999876432111000 00111233333222111100
Q ss_pred hhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCC--hhHH----HHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC
Q psy14655 85 IWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG--DTHL----SLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL 158 (261)
Q Consensus 85 ~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~--~~~~----~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~ 158 (261)
.. ...+..... .++|++++|+++... .... ........|..++++++... .++...++.+.+
T Consensus 199 -----~v---~e~l~~~~~-~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~- 266 (328)
T 3e70_C 199 -----VA---YDAIQHAKA-RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNE- 266 (328)
T ss_dssp -----HH---HHHHHHHHH-HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-
T ss_pred -----HH---HHHHHHHHh-ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHH-
Confidence 01 111111222 689999999997643 1111 11122237888888885443 344444454442
Q ss_pred CCCeEEEEEcCCC
Q psy14655 159 NIPVAGLVMNMNS 171 (261)
Q Consensus 159 ~~~~~giv~N~~~ 171 (261)
.....++++|+.+
T Consensus 267 ~~~it~iilTKlD 279 (328)
T 3e70_C 267 AVKIDGIILTKLD 279 (328)
T ss_dssp HSCCCEEEEECGG
T ss_pred hcCCCEEEEeCcC
Confidence 1244688999844
No 53
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.00 E-value=8.6e-05 Score=62.98 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=86.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
+++.--.+||||++..|..+|.++| .++.++-.-.. ..+.. ......+ .+.
T Consensus 157 v~GTD~~VGK~~ts~~L~~~l~~~G--~~a~~~~tgqt----g~~~~---~~gi~~D------------av~-------- 207 (349)
T 2obn_A 157 TVGTDMAIGKMSTSLELHWAAKLRG--WRSKFLATGQT----GVMLE---GDGVALD------------AVR-------- 207 (349)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT--CCEEEECCSHH----HHHHH---SCSCCGG------------GSB--------
T ss_pred EcCCCccccceeHHHHHHHHHHhcC--CcEEEEeccch----hhhhh---cCCcchh------------HHH--------
Confidence 3455568999999999999999999 98888431111 11110 0000000 000
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChh----HHHHhhhcCCCeEEEEeCCCcchH-----------H
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDT----HLSLIQNLFIDTAIIITIPDTMSL-----------Q 146 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~----~~~~~~~~~ad~viiv~~~~~~s~-----------~ 146 (261)
..+....++.+...+. ++||+||+-..+++.+. ...++.....|.+|++..|....+ .
T Consensus 208 ------~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~ 280 (349)
T 2obn_A 208 ------VDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLP 280 (349)
T ss_dssp ------HHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHH
T ss_pred ------HHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHH
Confidence 0111223455555565 78999999998776432 334455444688999999988777 7
Q ss_pred HHHHHHHHHHh-----CCCCeEEEEEcCCC
Q psy14655 147 VAQRGYTMFKK-----LNIPVAGLVMNMNS 171 (261)
Q Consensus 147 ~~~~~~~~l~~-----~~~~~~giv~N~~~ 171 (261)
....+++.+.. .+.++.|+++|...
T Consensus 281 ~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~ 310 (349)
T 2obn_A 281 EVIRLYETVASGGGAFGTVPVVGIALNTAH 310 (349)
T ss_dssp HHHHHHHHHHHTTTTSCCCCEEEEEEECTT
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 77888877765 67899999999844
No 54
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.95 E-value=4.9e-05 Score=59.21 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=29.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
|..++| .||||.|..+|..++.+| +||+++=+..
T Consensus 33 v~tG~G-kGKTTaA~GlalRA~g~G--~rV~~vQF~K 66 (196)
T 1g5t_A 33 VFTGNG-KGKTTAAFGTAARAVGHG--KNVGVVQFIK 66 (196)
T ss_dssp EEESSS-SCHHHHHHHHHHHHHHTT--CCEEEEESSC
T ss_pred EECCCC-CCHHHHHHHHHHHHHHCC--CeEEEEEeeC
Confidence 445665 999999999999999999 9999997765
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=0.00015 Score=64.36 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=30.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+..|+||||+...||..+...+ .+|++.+.|...
T Consensus 300 GpNGSGKTTLl~~LAgll~~~~--G~V~l~g~D~~r 333 (503)
T 2yhs_A 300 GVNGVGKTTTIGKLARQFEQQG--KSVMLAAGDTFR 333 (503)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTT--CCEEEECCCTTC
T ss_pred CCCcccHHHHHHHHHHHhhhcC--CeEEEecCcccc
Confidence 4579999999999999999888 899999999765
No 56
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.89 E-value=4.2e-05 Score=71.37 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..|++.|+|||+..+ ......+.. ||.+|+|+++.......+...++.+...+.+.+ +++|+++.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~ 146 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRV--LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDR 146 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHH--CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCc
Confidence 569999999998653 344555665 999999999887666666677777777788755 88999764
No 57
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.81 E-value=4.4e-06 Score=72.98 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=42.3
Q ss_pred CcccCCC---CCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCC
Q psy14655 1 MIASSKG---GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDT 52 (261)
Q Consensus 1 ~v~s~KG---GvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~ 52 (261)
+|+|... |.||||++.|||..||+.| +||+++ ...|++...||++..
T Consensus 61 lVTS~~PTP~GEGKSTtsinLA~alA~~G--kkVLLi---LR~Psl~~~FGikgg 110 (557)
T 3pzx_A 61 LVTAITPTPAGEGKTTTSVGLTDALARLG--KRVMVC---LREPSLGPSFGIKGG 110 (557)
T ss_dssp EEEESCCCTTCCCHHHHHHHHHHHHHHTT--CCEEEE---ECCCCSHHHHHTCCC
T ss_pred EEEcCCCCCCCCCchhHHHHHHHHHHHcC--CeEEEE---eCCCCccccCCCCCC
Confidence 3678888 9999999999999999999 999999 888899999998764
No 58
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.80 E-value=4.8e-05 Score=68.60 Aligned_cols=65 Identities=12% Similarity=0.166 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+... ......+.. +|.+|+|+++..........+++.+...+.+ +-+++|+.+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl 146 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTA--VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDR 146 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGG--CSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHH--CCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCC
Confidence 578999999997643 344555555 9999999997765555666677777767777 5689999764
No 59
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.78 E-value=0.0003 Score=66.86 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCCC------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 106 PCDILFIDTPPGTG------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 106 ~yd~IiiD~~~~~~------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
++|++||....|+. .....+.... ---||+|......++..+...++.+...++++.|+|+|+..
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l-~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~ 271 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPF-RLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGG-CCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc
Confidence 89999999876542 1222222221 22488888888899999888888888889999999999743
No 60
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.64 E-value=6e-05 Score=64.54 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=33.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+++|+||||+|.++|..+++.| .+|++||++...
T Consensus 67 ~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~ 103 (356)
T 1u94_A 67 EIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHAL 103 (356)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCc
Confidence 4568999999999999999999999 999999997643
No 61
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.61 E-value=0.00053 Score=58.50 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=31.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
+-+..|+||||+.-.|+..+...+ .+|.++..|++..
T Consensus 79 lvG~pgaGKSTLln~L~~~~~~~~--~~v~V~~~dp~~~ 115 (349)
T 2www_A 79 LSGPPGAGKSTFIEYFGKMLTERG--HKLSVLAVDPSSC 115 (349)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTT--CCEEEEECCC---
T ss_pred EEcCCCCCHHHHHHHHHHHhhhcC--CeEEEEeecCCCC
Confidence 457889999999999999998888 9999999999864
No 62
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.54 E-value=0.00052 Score=62.10 Aligned_cols=65 Identities=12% Similarity=0.201 Sum_probs=55.6
Q ss_pred cCCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 104 WGPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 104 ~~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
+.+|.+=|||||+.. ...+..++.+ +|.+|+|+++...-..++..+.+.+.+.+++.+ +++|+.+
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~raL~~--~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~D 163 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTYRVLTA--VDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMD 163 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHHHHHHS--CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTT
T ss_pred ECCEEEEEEeCCCcHHHHHHHHHHHHh--cCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEeccc
Confidence 367889999999875 4556677777 999999999999999999999999999999965 8889865
No 63
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.53 E-value=0.00048 Score=57.59 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
+..|+||||+...||..+...+ .+|++.+.|....
T Consensus 109 G~nGsGKTTll~~Lagll~~~~--g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 109 GVNGVGKTTTIAKLGRYYQNLG--KKVMFCAGDTFRA 143 (304)
T ss_dssp CSTTSSHHHHHHHHHHHHHTTT--CCEEEECCCCSST
T ss_pred CCCCCcHHHHHHHHHHHHHhcC--CEEEEEeecCCCh
Confidence 5689999999999999999888 8999999998653
No 64
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.39 E-value=0.00022 Score=61.23 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=32.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+..|+||||+|.++|..+++.| .+|++||++...
T Consensus 79 I~G~pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~ 114 (366)
T 1xp8_A 79 IYGPESGGKTTLALAIVAQAQKAG--GTCAFIDAEHAL 114 (366)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred EEcCCCCChHHHHHHHHHHHHHCC--CeEEEEECCCCh
Confidence 457789999999999999999999 999999999653
No 65
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.37 E-value=0.00067 Score=57.59 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=64.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCc-ccccCCCCCCCCCcCCccccccccCceeecCCCCcccc
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSI-PILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEK 81 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 81 (261)
+-+.-|+||||+.-.|+..+...+ .+|.++..|++.... ..+.+.... ...+ ...+++.+-+..... ..
T Consensus 60 i~G~~GaGKSTLl~~l~g~~~~~~--g~v~i~~~d~~~~~~~~~~~~~~~~-----i~~v--~q~~~~~~~~~~~~~-~l 129 (337)
T 2qm8_A 60 ITGVPGVGKSTTIDALGSLLTAAG--HKVAVLAVDPSSTRTGGSILGDKTR-----MARL--AIDRNAFIRPSPSSG-TL 129 (337)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECGGGGSSCCCSSCCGGG-----STTG--GGCTTEEEECCCCCS-SH
T ss_pred EECCCCCCHHHHHHHHHHhhhhCC--CEEEEEEEcCcccccccchHHHhhh-----heee--ccCcccccccCcccc-cc
Confidence 346779999999999999998888 899999999864321 011111100 0000 011222221111000 00
Q ss_pred hhhhhhchHHHHHHHHHHHHhccCCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCc
Q psy14655 82 SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDT 142 (261)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~ 142 (261)
.. ......+.+..+...++|+||+||++ +.......... +|.++++..++.
T Consensus 130 ~G-------~tr~~~e~~~~~~~~~~~~iliDT~G-i~~~~~~v~~~--~d~vl~v~d~~~ 180 (337)
T 2qm8_A 130 GG-------VAAKTRETMLLCEAAGFDVILVETVG-VGQSETAVADL--TDFFLVLMLPGA 180 (337)
T ss_dssp HH-------HHHHHHHHHHHHHHTTCCEEEEEECS-SSSCHHHHHTT--SSEEEEEECSCC
T ss_pred cc-------hHHHHHHHHHHHhcCCCCEEEEECCC-CCcchhhHHhh--CCEEEEEEcCCC
Confidence 00 01111111112223789999999996 44333334444 899999887653
No 66
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.24 E-value=0.0013 Score=61.15 Aligned_cols=65 Identities=17% Similarity=0.107 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+..+ ......+.. +|.+++|+++...........+..+...+.+.+ +++|+++.
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 141 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRV--LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDK 141 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTS
T ss_pred CCeEEEEEECcCccchHHHHHHHHHH--CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCc
Confidence 468999999997644 344555666 999999999877655566666677777788755 88999764
No 67
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.18 E-value=0.00056 Score=57.30 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCC------------hhHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG------------DTHLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~------------~~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.++|+|||+... ......+.. +|.+++|++++. .+.......++.+...+.+ +-+|+|+++.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~--aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEE--ADVILFMIDATEGWRPRDEEIYQNFIKPLNKP-VIVVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHH--CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCC-EEEEEECGGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhc--CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCC-EEEEEECccC
Confidence 67899999996532 122344555 999999999765 4444444337777776666 4589999764
No 68
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.17 E-value=0.0016 Score=60.61 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=47.8
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+.. .......+.. +|.+++|+++...........+..+...+.+.+ +|+|+++.
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl 139 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRV--LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDK 139 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHH--CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTS
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHH--CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCc
Confidence 46889999999764 3445566666 999999999776544555566667777777754 88999764
No 69
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.14 E-value=0.0008 Score=60.60 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+... ......+.. +|.+++|+++..........+...+...+.+. -+|+|+.+.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl 146 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTA--VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDR 146 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGG--CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCC
Confidence 568899999997543 444555665 99999999987766666677778888888874 488999664
No 70
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.11 E-value=0.00064 Score=59.18 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+..... ....+.. +|.+++|++++..........+..+...+.+.+-+++|+++.
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~--aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQ--MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTT--CSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHH--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccc
Confidence 56889999998644322 2233333 899999999877666677777777887888866689999764
No 71
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.08 E-value=0.00064 Score=59.04 Aligned_cols=66 Identities=8% Similarity=0.139 Sum_probs=47.2
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+.... .....+.. +|.+++|+.++.....+....+..+...+.+.+-+++|+++.
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~--aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAP--LDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSC--CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhh--CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECccc
Confidence 5689999999864321 12222333 899999999877666666677777777788866789999764
No 72
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.88 E-value=0.0016 Score=54.25 Aligned_cols=65 Identities=18% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCCCEEEEeCCCCCCh----------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD----------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~----------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
.++.++|+|||+.... .....+.. +|.+++|++.+..--.....+++.+.+. +.+ +-+|+|+++.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~--ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD--VNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS--CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhc--CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECccc
Confidence 4678999999964431 12233444 8999999986543222234455666665 555 5589999764
No 73
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.86 E-value=0.00092 Score=50.84 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=30.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+..|+||||++..|+..|..+| .+|.+|..|+..
T Consensus 10 ~G~sGsGKTTl~~~L~~~l~~~g--~~v~~ik~~~~~ 44 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAAAVREG--WRVGTVKHHGHG 44 (169)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTT--CCEEEEECCC--
T ss_pred ECCCCCCHHHHHHHHHHhhHhcC--CeeeEEEeCCCC
Confidence 34669999999999999999999 999999999864
No 74
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.68 E-value=0.0024 Score=53.48 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=30.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+--|+||||++.+++..+++.|++.+|++||.....
T Consensus 34 ~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 34 AGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 3457999999999999999987222899999987653
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.66 E-value=0.028 Score=42.76 Aligned_cols=65 Identities=6% Similarity=0.133 Sum_probs=40.9
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHhC-----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDTM----SLQVAQRGYTMFKKL-----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~~----s~~~~~~~~~~l~~~-----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.+++|.+.+.. +......+.+.+... +.+ +.+|.|+.+.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRG--VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTT--CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhc--CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhc
Confidence 45679999999743 3333444555 9999999997744 333333444444432 344 6689999764
No 76
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.66 E-value=0.0091 Score=50.63 Aligned_cols=130 Identities=20% Similarity=0.180 Sum_probs=75.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCCCCCCCcCCccccccccCceeecCCCCcccch
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGVKCLSMGNLITEKS 82 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 82 (261)
++.--++||||++..|...+.++| .++..+-.-.. ..+.+.. ..+..+ ...
T Consensus 175 ~GTDt~vGKt~t~~~L~~~l~~~G--~~v~~v~tgqt----g~li~~~--~gv~~D-----------------~~~---- 225 (350)
T 2g0t_A 175 FGTDCVVGKRTTAVQLWERALEKG--IKAGFLATGQT----GILIGAD--AGYVID-----------------AVP---- 225 (350)
T ss_dssp EESSSSSSHHHHHHHHHHHHHHTT--CCEEEEECSHH----HHHTTCS--EECCGG-----------------GSB----
T ss_pred ecCCCCccCccHHHHHHHHHHhcC--CeEEEEccCce----eeeeccC--CCCCCC-----------------cee----
Confidence 444557999999999999999999 99988553222 1111111 011000 000
Q ss_pred hhhhhchHHHHHHHHHHHHh-ccCCCCEEEEeCCCCCChhH-----HHHhhhcCCCeEEEEeCCC-----------c-ch
Q psy14655 83 AAIWRGLMVMQALNKLTVQV-QWGPCDILFIDTPPGTGDTH-----LSLIQNLFIDTAIIITIPD-----------T-MS 144 (261)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l-~~~~yd~IiiD~~~~~~~~~-----~~~~~~~~ad~viiv~~~~-----------~-~s 144 (261)
..+....++.++... + ++||++|+-.++++.+.. ...+.....|.+|+.-.|. . .+
T Consensus 226 -----~~~~ag~~e~~i~~~~~-~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~ 299 (350)
T 2g0t_A 226 -----ADFVSGVVEKAVLKLEK-TGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPD 299 (350)
T ss_dssp -----GGGHHHHHHHHHHHHHH-TTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCC
T ss_pred -----cchhhHHHHhhHHHhhh-cCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcC
Confidence 000111122222222 4 899999999998875332 3344444478888877654 2 45
Q ss_pred HHHHHHHHHHHHhCCCCeEEEE-EcC
Q psy14655 145 LQVAQRGYTMFKKLNIPVAGLV-MNM 169 (261)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~giv-~N~ 169 (261)
++....+++.+. +.+++|++ +|.
T Consensus 300 i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 300 FEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp HHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 555455554444 67899999 995
No 77
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.61 E-value=0.012 Score=54.93 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=53.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
++|-+=|||||+..+ ..+..++.. ||.+|+|++....-..++..+++.+.+.+++.+ +++|+.+
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~--~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiD 148 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRV--LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMD 148 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSS
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHH--hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEcccc
Confidence 356778999998764 556677777 999999999988888899999999999999955 8899865
No 78
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.54 E-value=0.0015 Score=50.20 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=31.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++..||..+...| .+|.++|.|.-
T Consensus 17 ~l~G~~GsGKsT~~~~L~~~l~~~~--~~~~~~~~d~~ 52 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLADLLQKEG--YRVEVLDGDWA 52 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEeeHHHH
Confidence 4567889999999999999999988 99999998743
No 79
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.46 E-value=0.0096 Score=44.10 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHh--CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKK--LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~--~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.+++|...+ ..+...+...+..+.. .+.+ +.+|.|+.+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 121 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRG--AQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDL 121 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTT--CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 35789999999632 2223344455 89999999854 4456666666655543 2445 5689999664
No 80
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.46 E-value=0.0025 Score=58.77 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++|.+=|||||+..+ ..+..++.. +|.+|+|++....-..++..+.+.+.+.+++.+ +++|+.+-
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~--~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr 131 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSV--LDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQ 131 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTT--CSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHH--hCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEecccc
Confidence 678889999998765 445566666 999999999888877888899999999999966 77898764
No 81
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.44 E-value=0.0063 Score=48.39 Aligned_cols=31 Identities=6% Similarity=0.035 Sum_probs=27.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+..+--|+||||++..++..++.+| ++|+++
T Consensus 16 litG~mGsGKTT~ll~~~~r~~~~g--~kVli~ 46 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRLEYAD--VKYLVF 46 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHHHhcC--CEEEEE
Confidence 3456669999999999999999999 999999
No 82
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.43 E-value=0.0048 Score=45.49 Aligned_cols=64 Identities=11% Similarity=0.007 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCCCh---------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD---------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~---------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+..+.|+|+|+.... .....+.. +|.++++.+.+.........+.+.+...+.+ +.+|.|+.+.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALED--AEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTT--CSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHh--CCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 457889999865431 11223344 8999999986553222223445555555666 5699999664
No 83
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.28 E-value=0.011 Score=45.83 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+.=|+||||.+..+|..+..+| ++|+++-
T Consensus 15 G~mgsGKTT~ll~~a~r~~~~g--~kV~v~k 43 (191)
T 1xx6_A 15 GPMYSGKSEELIRRIRRAKIAK--QKIQVFK 43 (191)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHHCC--CEEEEEE
Confidence 3449999999999999999999 9999995
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.26 E-value=0.0038 Score=48.93 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=29.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++.++|. ..| .+|++++.+.+.
T Consensus 24 ~i~G~~GsGKTtl~~~l~~---~~~--~~v~~i~~~~~~ 57 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGL---LSG--KKVAYVDTEGGF 57 (220)
T ss_dssp EEECSTTSSHHHHHHHHHH---HHC--SEEEEEESSCCC
T ss_pred EEECCCCCCHHHHHHHHHH---HcC--CcEEEEECCCCC
Confidence 4568899999999999998 667 899999998743
No 85
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.21 E-value=0.021 Score=42.57 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCCC----hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG----DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~----~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
.+.+.++|+|+... ......+.. +|.+++|... +..++..+..+...+... +.+ +-+|.|+.+.
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl 123 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQG--GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADL 123 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTS--CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTC
T ss_pred EEEEEEEecCCCCccchhhhHHhhccc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhh
Confidence 46789999986433 111222333 7888888874 456777777777766654 455 5699999775
No 86
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.20 E-value=0.0048 Score=51.73 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=32.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++.++|..++.+| .+|+++.+...
T Consensus 72 li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s 107 (315)
T 3bh0_A 72 LIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMG 107 (315)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 5678899999999999999999998 99999999865
No 87
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.004 Score=49.71 Aligned_cols=35 Identities=11% Similarity=-0.084 Sum_probs=31.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++.++|..++..| .+|++++.+..
T Consensus 28 i~G~~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~~ 62 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQFLWNGLKMG--EPGIYVALEEH 62 (247)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTT--CCEEEEESSSC
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccCC
Confidence 456789999999999999999988 99999999865
No 88
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.11 E-value=0.0032 Score=51.24 Aligned_cols=35 Identities=34% Similarity=0.422 Sum_probs=30.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.|-.|+||||++..|+..|...| ..++++|.|.
T Consensus 8 vl~G~pGSGKSTla~~La~~L~~~g--~~~i~~~~D~ 42 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAKILSKNN--IDVIVLGSDL 42 (260)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTT--CCEEEECTHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCC--CEEEEECchH
Confidence 4667799999999999999999888 9998888774
No 89
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.09 E-value=0.016 Score=50.25 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=46.3
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMS-LQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|||+..... ....+.. +|.+++++..+... ...+...+..+...+.+.+-+++|+++.
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~--~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAAL--MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTT--CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cceEEEEECCCcHHHHHHHHHHHhh--CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 3689999999754322 2233333 99999999977654 7777777777777676557799999764
No 90
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.07 E-value=0.023 Score=42.06 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=42.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCCC--CeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLNI--PVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.++++...+ ..+...+..+++.+..... ..+.+|.|+.+.
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRG--SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcc
Confidence 346799999996432 222333444 89999999854 4566777777776665422 246678899764
No 91
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.05 E-value=0.04 Score=41.30 Aligned_cols=66 Identities=15% Similarity=0.075 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+. +..++..+..++..+.... -..+.+|.|+.+.
T Consensus 59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl 129 (181)
T 2efe_B 59 ATVKFEIWDTAGQERYHSLAPMYYRG--AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDL 129 (181)
T ss_dssp EEEEEEEEECCCSGGGGGGTHHHHTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEEeCCCChhhhhhhHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcc
Confidence 356899999997432 222334444 8999999985 4456677777776665532 2246689999775
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.03 E-value=0.0046 Score=47.93 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=30.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+..|+||||++..++..+...+ .+++++++.
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~~--~~~~~~~~~ 91 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKRN--VSSLIVYVP 91 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTT--CCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEhH
Confidence 4567889999999999999999988 999998774
No 93
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.01 E-value=0.0042 Score=52.88 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=31.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++.++|..+++.| .+|+++|++..
T Consensus 66 I~G~pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~ 100 (349)
T 2zr9_A 66 IYGPESSGKTTVALHAVANAQAAG--GIAAFIDAEHA 100 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 456789999999999999999998 99999999864
No 94
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.00 E-value=0.0092 Score=52.65 Aligned_cols=65 Identities=14% Similarity=0.018 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCCCC----------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG----------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~----------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+..+.|+|||+-.. ......+.. +|.+++|++....-...-..+.+.+++.+.+ +-+|.|+++.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~--ad~il~VvD~~~~~~~~d~~l~~~l~~~~~p-vilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE--ADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHH--CSEEEEEEESSSCSCHHHHHHHHHHTTCCSC-EEEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh--CCEEEEEEeCCCCCChHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 456788999986221 112233344 8999999986543333345566777777776 4488999775
No 95
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.92 E-value=0.031 Score=49.63 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=44.7
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMS-------LQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+.... .....+.. +|.+++|++.+... .......+..+...+.+.+-+++|+++.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~--aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQ--ADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTT--CSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhh--CCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 5689999999965332 22333444 99999999976642 2355566666777777667799999764
No 96
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.92 E-value=0.0059 Score=51.71 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=33.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+.-|+||||++.++|..++..| .+|+++.+....
T Consensus 50 iIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlEms~ 86 (338)
T 4a1f_A 50 IIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLEMSA 86 (338)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESSSCH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCCCH
Confidence 4667889999999999999999988 999999998754
No 97
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.91 E-value=0.055 Score=40.42 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh-------CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK-------LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~-------~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.... .....+.. +|.+++|.+. +..+...+..+++.+.. .+.+ +.+|.|+.+.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRG--ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTT--CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhc--CCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence 4568899999864321 12223333 8999999985 44566666666555443 2344 6689999764
No 98
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.91 E-value=0.0059 Score=53.74 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=34.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++.+..|+||||++.++|..++.+| .+|+++.+.....
T Consensus 201 iIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms~~ 238 (444)
T 3bgw_A 201 LIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKK 238 (444)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSCTT
T ss_pred EEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCCHH
Confidence 5677889999999999999999988 9999999997653
No 99
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.77 E-value=0.006 Score=47.87 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=29.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+.+|+||||+..+|+..+.. . .++.+|+.|++.
T Consensus 34 ~i~G~~g~GKTTl~~~l~~~~~~-~--~~~~~i~~d~~~ 69 (221)
T 2wsm_A 34 NIMGAIGSGKTLLIERTIERIGN-E--VKIGAMLGDVVS 69 (221)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTT-T--SCEEEEECSCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHhcc-C--CeEEEEecCCCC
Confidence 35578999999999999988744 3 689999999864
No 100
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.71 E-value=0.014 Score=48.55 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCCCEEEEeCCCCCChh-----------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT-----------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~-----------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.++++|||+..... ....+.. +|.+++|+..+..+ .....+.+.+...+.+.+ +++|+.+.
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~--~D~vl~Vvd~~~~~-~~~~~i~~~l~~~~~P~i-lvlNK~D~ 128 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD--VELVIFVVEGTRWT-PDDEMVLNKLREGKAPVI-LAVNKVDN 128 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC--EEEEEEEEETTCCC-HHHHHHHHHHHSSSSCEE-EEEESTTT
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc--CCEEEEEEeCCCCC-HHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 44578888887532011 0112222 67777777754432 222345556665566644 67788664
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.70 E-value=0.0085 Score=47.20 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=31.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++..++..++..+ .+|++++.+..
T Consensus 28 i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~~ 62 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEES 62 (235)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSSC
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEcccC
Confidence 456789999999999999999888 89999998874
No 102
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.68 E-value=0.053 Score=41.75 Aligned_cols=66 Identities=14% Similarity=0.019 Sum_probs=43.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+..++..+.... -..+.+|.|+.+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRG--SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 125 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 346899999997432 222334444 89999999854 456777777776665432 2246689999775
No 103
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.68 E-value=0.017 Score=53.53 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=47.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+... ......+.. +|.+++|+++...........++.+...+.+.+ +++|+.+.
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~--ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~ 138 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEA--ADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDK 138 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhh--cCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCch
Confidence 467889999996543 334455555 999999999776655666777788877788865 78999653
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.67 E-value=0.028 Score=41.98 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=39.9
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+..+.|+|+|+.... .....+.. +|.+++|...+..........++.+...+.+ +.+|.|+.+.
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl 119 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRARGAQV--TDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK 119 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCCSSCCC--CCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhh--CCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence 3456788899864321 11122233 7889999986654444444555666555666 5689999764
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.66 E-value=0.0074 Score=46.93 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=31.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+..|+||||++..|+..+...| .+|.+++.|...
T Consensus 27 i~G~~GsGKstl~~~l~~~~~~~~--~~v~~~~~d~~~ 62 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQTLREQG--ISVCVFHMDDHI 62 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEGGGGC
T ss_pred EECCCCCCHHHHHHHHHHHHhhcC--CeEEEeccCccc
Confidence 457889999999999999998888 899999888654
No 106
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.65 E-value=0.055 Score=40.31 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh-------CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK-------LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~-------~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+..... ....+.. +|.++++... +..+...+...++.+.. .+.+ +-+|.|+.+.
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 128 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRG--SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDI 128 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTC
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhc--CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcc
Confidence 4679999999643222 2223333 8999998874 44566666655555443 2344 5689999764
No 107
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.64 E-value=0.013 Score=44.60 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=31.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+++..|+||||+...|...+...| .+|..+..++..
T Consensus 11 i~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~~ 46 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHHD 46 (174)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC-
T ss_pred EEeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCCc
Confidence 456789999999999999999988 999999988764
No 108
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.58 E-value=0.069 Score=39.74 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=42.9
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.+++|.+.+ ..+...+..++..+... +. .+.+|.|+.+.
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 132 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRG--AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-VIILIGNKADL 132 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTC
T ss_pred eEEEEEEEECCCChHhhhhHHHHhcc--CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECccc
Confidence 35689999999643 2333444555 89999999854 45666666666655542 33 46689999764
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.51 E-value=0.011 Score=46.47 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=26.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
.+.=|.||||.+..++..+..+| ++|+++-
T Consensus 34 tG~MgsGKTT~lL~~a~r~~~~g--~kVli~k 63 (214)
T 2j9r_A 34 CGSMFSGKSEELIRRVRRTQFAK--QHAIVFK 63 (214)
T ss_dssp ECSTTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred ECCCCCcHHHHHHHHHHHHHHCC--CEEEEEE
Confidence 34448999999999999999999 9999985
No 110
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.48 E-value=0.014 Score=48.64 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+..|+||||+...||..+...+ .+|++.+.|...
T Consensus 107 G~nGsGKTTll~~Lag~l~~~~--g~V~l~g~d~~r 140 (302)
T 3b9q_A 107 GVNGGGKTTSLGKLAHRLKNEG--TKVLMAAGDTFR 140 (302)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTT--CCEEEECCCCSC
T ss_pred cCCCCCHHHHHHHHHHHHHHcC--CeEEEEeecccc
Confidence 4579999999999999999888 899999998764
No 111
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.43 E-value=0.049 Score=40.23 Aligned_cols=65 Identities=17% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh---CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK---LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~---~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+..... ....+.. +|.+++|... +..+...+...++.+.. .+. .+.+|.|+.+.
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 123 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRD--SNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI-CLCIVGNKIDL 123 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS-EEEEEEECGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-eEEEEEECccc
Confidence 34678999998643211 1122333 8999999985 44566666666665544 233 36689999664
No 112
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.43 E-value=0.063 Score=40.70 Aligned_cols=66 Identities=14% Similarity=0.003 Sum_probs=43.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+. +..+...+..++..+.... -..+.+|.|+.+.
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRG--AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 356889999997432 223334444 8999999985 4456677777776666532 2346699999764
No 113
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.41 E-value=0.056 Score=39.82 Aligned_cols=66 Identities=14% Similarity=0.039 Sum_probs=42.2
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC-C-CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL-N-IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~-~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+...+..+... . -..+.+|.|+.+.
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRN--AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhcc--CcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCc
Confidence 346789999996432 223334444 89999999854 45666776666655542 1 2246689999664
No 114
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.38 E-value=0.012 Score=46.42 Aligned_cols=36 Identities=3% Similarity=-0.114 Sum_probs=31.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++..++..+...+ .++..++++..
T Consensus 56 ll~G~~G~GKT~la~~l~~~~~~~~--~~~~~~~~~~~ 91 (242)
T 3bos_A 56 YLWGPVKSGRTHLIHAACARANELE--RRSFYIPLGIH 91 (242)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEGGGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHH
Confidence 4567789999999999999999988 99999998653
No 115
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.36 E-value=0.03 Score=54.71 Aligned_cols=66 Identities=11% Similarity=0.171 Sum_probs=45.1
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+..... ....+.. +|.+|+|+..+.....++...+..+...+.+.+-+++|+++.
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~--AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQ--MDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCC--CSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhh--CCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Confidence 56889999999643221 1222233 899999998766555555566666666788866789999775
No 116
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.36 E-value=0.0084 Score=45.79 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=29.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..|+..+...| .++..++.|
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l~~~g--~~~~~~~~~ 38 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEILDNQG--INNKIINYG 38 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTTT--CCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--ceEEEEECC
Confidence 4566779999999999999999888 889888754
No 117
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.36 E-value=0.024 Score=49.65 Aligned_cols=66 Identities=14% Similarity=0.012 Sum_probs=36.7
Q ss_pred CCCCEEEEeCCCCCC----------hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 105 GPCDILFIDTPPGTG----------DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~----------~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
.+..+.|+|||+... ......+.. ||.+++|++....-...-..+.+.+++.+.+ +-+|+|+++..
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~--ad~il~vvD~~~~~~~~d~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE--ADVIIFMVNGREGVTAADEEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHH--CSEEEEEEETTTCSCHHHHHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCc
Confidence 456788899986421 111233444 8999999886442222223455666666666 55899998763
No 118
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.29 E-value=0.054 Score=41.18 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|... +..+...+...+..+... +. .+-+|.|+.+.
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p~ilv~nK~Dl 133 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRG--AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV-NKLLVGNKCDL 133 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTC
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhh--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECccc
Confidence 4689999999643 2233344555 8999999984 445666666666666543 33 45689999774
No 119
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.19 E-value=0.039 Score=42.15 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+...++.+.... -..+-+|.|+.+.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~--~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl 143 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRS--AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 46899999996432 223334455 89999999854 456666666666665532 2246689999664
No 120
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.19 E-value=0.017 Score=45.98 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=30.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~~ 40 (261)
++.+.-|+|||+++.++|...+ +.| .+|+++.++...
T Consensus 34 ~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~~~ 71 (251)
T 2zts_A 34 LLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERA 71 (251)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccCCH
Confidence 4567889999999999998755 557 899999998654
No 121
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.17 E-value=0.052 Score=40.04 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|...+ ..+...+...+..+... +. .+-+|.|+.+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl 120 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRG--AMGIILVYDITDERTFTNIKQWFKTVNEHANDEA-QLLLVGNKSDM 120 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTT--EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTC
T ss_pred EEEEEEEeCCCChhhhhhHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECccC
Confidence 4678999999642 2223344444 89999999854 45666666666655543 33 46689999764
No 122
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.16 E-value=0.02 Score=48.89 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+..|+||||+...||..+...+ .+|++.+.|...
T Consensus 164 G~nGsGKTTll~~Lag~l~~~~--G~V~l~g~D~~r 197 (359)
T 2og2_A 164 GVNGGGKTTSLGKLAHRLKNEG--TKVLMAAGDTFR 197 (359)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTT--CCEEEECCCCSC
T ss_pred cCCCChHHHHHHHHHhhccccC--CEEEEecccccc
Confidence 4579999999999999999888 899999999764
No 123
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.16 E-value=0.094 Score=40.16 Aligned_cols=65 Identities=17% Similarity=-0.006 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.... .....+.. +|.+++|...+ ..++..+..++..+... +. .+.+|.|+.+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl 125 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRG--AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA-QVLLVGNKCDM 125 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGG--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSC-EEEEEEECTTC
T ss_pred eEEEEEEEECCCchhhcchHHHhhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECccc
Confidence 3568899999864322 22233344 89999999854 45666677776666553 33 46699999775
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.15 E-value=0.11 Score=42.26 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=40.4
Q ss_pred CCCCEEEEeCCCCCChh------------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT------------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~------------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+..+.. ....+....+|.+++|++.+. ......+...+.+.+.+ +-+|+|+++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p-~ivv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIP-CIVALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCC-EEEEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCC-EEEEEECccc
Confidence 45688999999754321 111111112899999998655 34444555666666777 4589999653
No 125
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.14 E-value=0.046 Score=40.41 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCCCCh---hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD---THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~---~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.++|+|+.... .....+.. +|.+++|... +..++..+...+..+... +.+ +-+|.|+.+.
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 121 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQT--GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDL 121 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEECCCccccchhhhhhhhcc--CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcch
Confidence 3577889999864322 12223444 8999999984 445666666666655442 445 5589999764
No 126
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.13 E-value=0.011 Score=44.89 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=26.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~ 36 (261)
+..+..|+||||++..++..+. ..| .+++++++
T Consensus 42 ~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~~ 75 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFDT 75 (180)
T ss_dssp EECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEEH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEEH
Confidence 3457789999999999999998 667 77777654
No 127
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.048 Score=41.35 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=43.6
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC---CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN---IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.+++|...+ ..+...+...+..+.... -..+-+|.|+.+.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRG--AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTT--CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 35789999999643 2233344555 89999999854 456666666666665531 2246689999774
No 128
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.11 E-value=0.016 Score=50.86 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++.++|..++. .| .+|+++++...
T Consensus 204 ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~slE~~ 240 (444)
T 2q6t_A 204 IIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSLEMP 240 (444)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSSC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 45678899999999999999997 47 99999999865
No 129
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.09 E-value=0.012 Score=47.61 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCCEEEEeCCCCCChh-------------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC-----CCCeEEEE
Q psy14655 105 GPCDILFIDTPPGTGDT-------------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-----NIPVAGLV 166 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~-------------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-----~~~~~giv 166 (261)
.+++++|+|||+..... ....+.. +|.+++|+..+...- ....+++.+.+. ..+.+.++
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~--~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPG--PHVLLLVTQLGRYTS-QDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTC--CSEEEEEEETTCCCH-HHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCC--CcEEEEEEeCCCCCH-HHHHHHHHHHHHhCchhhccEEEEE
Confidence 45689999999643210 0112233 899999998764221 222233444332 34555455
Q ss_pred EcCCCC
Q psy14655 167 MNMNSV 172 (261)
Q Consensus 167 ~N~~~~ 172 (261)
.|+.+.
T Consensus 146 ~nK~Dl 151 (260)
T 2xtp_A 146 THKEDL 151 (260)
T ss_dssp ECGGGG
T ss_pred Eccccc
Confidence 558664
No 130
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.06 E-value=0.072 Score=41.17 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+..... ....+.. +|.+++|.+. +..+...+...++.+.... ...+.+|.|+.+.
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 143 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRS--ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 143 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 4678999998643221 2223333 8999999984 4556666666666665432 2245688999664
No 131
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.05 E-value=0.015 Score=49.53 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=30.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
.+--|+||||++.++|..++..| .+|++||.....
T Consensus 67 ~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~ 101 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHAL 101 (356)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCC
T ss_pred ECCCCCCHHHHHHHHHHHHHhcC--CeEEEEeccccc
Confidence 34579999999999999999998 999999987654
No 132
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.02 E-value=0.018 Score=50.69 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=32.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++.++|..++. .| .+|+++++....
T Consensus 207 iI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~E~s~ 244 (454)
T 2r6a_A 207 IVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSLEMSA 244 (454)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEESSSCH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCH
Confidence 45678899999999999999997 47 899999998753
No 133
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.97 E-value=0.041 Score=49.53 Aligned_cols=64 Identities=20% Similarity=0.226 Sum_probs=46.2
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+..+.|+|||+... ......+.. +|.+++|+..+..........+..+...+.+ +-+++|+++.
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~--aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl 116 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQV--TDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDK 116 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBS--BSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGG
T ss_pred CCEEEEEECCChHHHHHHHHHHHcc--CCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEecccc
Confidence 44678899997432 222222333 8999999998877777777888888888888 5589999775
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.96 E-value=0.11 Score=47.44 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=43.9
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..|.+.|+|||+..+. .....+.. ||.+++|++.+.....+.......+...+.+ +-+++|+.+.
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~--aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl 137 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAA--CEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDL 137 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHT--CSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHh--CCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCc
Confidence 3578889999976542 23344455 9999999997665444444445555566777 5589999775
No 135
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.95 E-value=0.042 Score=41.02 Aligned_cols=65 Identities=14% Similarity=0.005 Sum_probs=41.6
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC-CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN-IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~-~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|... +..+...+...+..+.... -..+-+|.|+.+.
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 125 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRG--THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD 125 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTC
T ss_pred EEEEEEEcCCCchhhhhhHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 3679999998632 2222334444 8999999984 4566666666666665432 2345689999764
No 136
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.94 E-value=0.057 Score=41.48 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHh-------CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKK-------LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~-------~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+..++..+.. .+.+ +.+|.|+.+.
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRG--ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDL 129 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhC--CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCC
Confidence 346799999986422 112233444 89999999854 4556666655554432 2344 5689999775
No 137
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.93 E-value=0.052 Score=40.89 Aligned_cols=64 Identities=17% Similarity=0.044 Sum_probs=40.2
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+..... ....+.. +|.+++|.+.+ ..+...+...+..+... +. .+.+|.|+.+.
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 127 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRG--AAGALLVYDITSRETYNALTNWLTDARMLASQNI-VIILCGNKKDL 127 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECccc
Confidence 3678999998643222 2222333 89999999854 45666666666555432 33 46689999664
No 138
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.93 E-value=0.013 Score=44.64 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=28.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..||..+...| .+.-++|.|
T Consensus 7 ~i~G~~GsGKsT~~~~L~~~l~~~g--~~~~~i~~~ 40 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMDNLRKEG--VNYKMVSFG 40 (192)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTT--CCCEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC--cceEEEehH
Confidence 4567789999999999999998887 666677754
No 139
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.92 E-value=0.012 Score=52.51 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=32.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++.++|..++.. | .+|+++++....
T Consensus 246 li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~E~s~ 283 (503)
T 1q57_A 246 MVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAMLEESV 283 (503)
T ss_dssp EEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEESSSCH
T ss_pred EEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEeccCCH
Confidence 456778999999999999999987 8 999999998753
No 140
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.082 Score=40.77 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=41.8
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+...+..+.... -..+.+|.|+.+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRG--AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 46899999996422 222334444 89999999854 456666666666555431 1246689999774
No 141
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.89 E-value=0.021 Score=43.05 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=26.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-------cCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-------CYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-------~g~~~~VllvD~ 36 (261)
++.+..|+||||++..++..+.. .+ .+++.+++
T Consensus 47 ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 86 (195)
T 1jbk_A 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG--RRVLALDM 86 (195)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTCSCGGGTT--CEEEEECH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCchhhcC--CcEEEeeH
Confidence 45678899999999999999876 35 67777766
No 142
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.86 E-value=0.014 Score=45.84 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=28.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+-+.+|+||||+..+|+..+... .++..|+.|++.
T Consensus 43 ivG~~gvGKTtl~~~l~~~~~~~---~~~~~i~~d~~~ 77 (226)
T 2hf9_A 43 FMGAIGSGKTLLIEKLIDNLKDK---YKIACIAGDVIA 77 (226)
T ss_dssp EEESTTSSHHHHHHHHHHHHTTT---CCEEEEEEETTT
T ss_pred EEcCCCCCHHHHHHHHHHHhccC---CeEEEEECCCCC
Confidence 34679999999999999887543 688899999863
No 143
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.80 E-value=0.18 Score=37.71 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|... +..++..+...+..+.. .+.+ +-+|.|+.+.
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 135 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDL 135 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred EEEEEEEECCCchhhHHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence 4556779998643 2333444555 8999999984 44566666666655533 3445 5589999774
No 144
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.79 E-value=0.01 Score=49.11 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+++-.|+||||+|..|+..+...| .++.+||+|--.
T Consensus 10 ItG~sGSGKSTva~~L~~~lg~~~--~~~~vI~~D~~~ 45 (290)
T 1a7j_A 10 VTGSSGAGTSTVKHTFDQIFRREG--VKAVSIEGDAFH 45 (290)
T ss_dssp EESCC---CCTHHHHHHHHHHHHT--CCEEEEEGGGGB
T ss_pred EECCCCCCHHHHHHHHHHHHhhcC--CCeeEeecchhh
Confidence 457789999999999999998888 899999999754
No 145
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.76 E-value=0.038 Score=41.99 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+++..... .+.. +|.+++|.+ .+..++..+..++..+... +.+ +.+|.|+.+.
T Consensus 65 ~~~~l~i~Dt~G~~~~~---~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (184)
T 3ihw_A 65 QSYLLLIRDEGGPPELQ---FAAW--VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAI 131 (184)
T ss_dssp EEEEEEEEECSSSCCHH---HHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTC
T ss_pred EEEEEEEEECCCChhhh---eecC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 34678889998643322 4455 899999988 4556677777777777654 344 5589999664
No 146
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.75 E-value=0.063 Score=49.96 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=39.9
Q ss_pred CCEEEEeCCCCCC-----hhHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGTG-----DTHLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~~-----~~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.|+|||+-.. ......+.. ||.+++|+.++. .+......+.+.+...+.+ +.+|+|+++.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~--aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNN--CHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHS--SSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHh--CCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 6899999996221 222344444 999999998654 3444443333455555666 6689999664
No 147
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.73 E-value=0.016 Score=52.39 Aligned_cols=35 Identities=31% Similarity=0.331 Sum_probs=31.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+..|+||||++..|+..|..+| .++.++|.|.
T Consensus 376 ~l~G~~GsGKSTia~~La~~L~~~G--~~~~~ld~D~ 410 (546)
T 2gks_A 376 WLTGLPCAGKSTIAEILATMLQARG--RKVTLLDGDV 410 (546)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECHHH
T ss_pred EccCCCCCCHHHHHHHHHHHhhhcC--CeEEEECchH
Confidence 4567889999999999999999999 9999999884
No 148
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.73 E-value=0.17 Score=38.18 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=41.2
Q ss_pred CCCEEEEeCCCCCC---hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG---DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~---~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+. +..+...+...++.+.. .+.+ +-+|.|+++.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~--~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 139 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRN--VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDL 139 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTT--CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 46899999986322 122333444 8999999984 45566666666655543 2344 5689999764
No 149
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.69 E-value=0.025 Score=43.92 Aligned_cols=29 Identities=28% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+--|+||||.+..|+..|.++| .+|++.-
T Consensus 7 G~DGsGKsTq~~~L~~~L~~~g--~~v~~tr 35 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEKRG--KKVILKR 35 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCC--CcEEEEE
Confidence 5569999999999999999999 9998764
No 150
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.68 E-value=0.1 Score=45.70 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=35.6
Q ss_pred CCCEEEEeCCCCCCh-----------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD-----------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~-----------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+..+.|+|||+.... .....+.. ||.+++|++....--..-..+.+.+++.+.+ +-+|.|+++.
T Consensus 48 ~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~--ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE--ADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT--CSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred CeEEEEEECCCccccccchHHHHHHHHHHHHHHh--CCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 446788888863321 11223344 8888888875432111113344555555666 4488898663
No 151
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=94.62 E-value=0.065 Score=47.78 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=43.9
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
.++.+.|+|||+..... ....+.. +|.+++|+..+.....++...+..+...+.+ +-+++|+++..
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~--aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQA--TDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBS--CSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhh--CCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 34578899999754322 1122233 8999999987665455555666667777888 66999998763
No 152
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.57 E-value=0.24 Score=38.80 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=44.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
..+.+-|.||++.-. ......... ++.+++|.. .+..++..+...++.+... +. .+.+|.|+.+.
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~--a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~-piilVgNK~Dl 130 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRD--SAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV-IIMLVGNKTDL 130 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS-EEEEEEECTTC
T ss_pred eEEEEEEEECCCchhhhhHHHHHhcc--ccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC-eEEEEeeccch
Confidence 456788999986432 223334444 899999988 6677888888887766543 33 46689999764
No 153
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.56 E-value=0.084 Score=50.23 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=44.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
..+.+.|+|||+..+ ......+.. +|.+|+|++...............+...+.+. -+++|+.+
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~--aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D 161 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRV--TDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVD 161 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHT--CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCC
Confidence 467899999997643 445555665 99999999976654444455555555667765 48999855
No 154
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.50 E-value=0.026 Score=42.77 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=29.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+--|+||||++..|+..+...| .+++.+|.|.-
T Consensus 10 l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d~~~~ 44 (179)
T 2pez_A 10 LTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDGDNI 44 (179)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhhCC--CcEEEECChHH
Confidence 456779999999999999988778 99988886654
No 155
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.45 E-value=0.022 Score=44.49 Aligned_cols=35 Identities=26% Similarity=0.143 Sum_probs=29.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..|+..+. ..| .++..+|.|.
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~l~~~~g--~~~~~~~~d~ 64 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQLVRDRR--VHAYRLDGDN 64 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEECHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhccccC--CcEEEECChH
Confidence 3456789999999999999998 788 8999998664
No 156
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.43 E-value=0.029 Score=46.81 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=30.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D 37 (261)
+..+.-|+|||+++..+|..+. +.| .+|+++.+.
T Consensus 156 ll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~~~ 190 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLHFP 190 (308)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEHH
Confidence 4567789999999999999999 998 999998874
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.39 E-value=0.028 Score=46.36 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~ 38 (261)
+.+.-|+||||++.++|..++.. | .+|++++.+.
T Consensus 40 i~G~~G~GKTTl~~~ia~~~~~~~G--~~v~~~~~e~ 74 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQALQWGTAMG--KKVGLAMLEE 74 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTSC--CCEEEEESSS
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHcC--CeEEEEeCcC
Confidence 45677999999999999999976 7 8999999875
No 158
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.39 E-value=0.021 Score=45.97 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=28.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc-----CCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC-----YPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~-----g~~~~VllvD~D~~ 39 (261)
+.+--|+||||+|..|+..|... + .+|+++|+|--
T Consensus 27 I~G~~GSGKST~a~~L~~~lg~~~~d~~~--~~~~~i~~D~~ 66 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQLLGQNEVDYRQ--KQVVILSQDSF 66 (252)
T ss_dssp EECSTTSSHHHHHHHHHHHTTGGGSCGGG--CSEEEEEGGGG
T ss_pred EECCCCCCHHHHHHHHHHHhhhhcccccC--CceEEEecCcc
Confidence 56778999999999999887643 5 78999999854
No 159
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.36 E-value=0.02 Score=48.10 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=29.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc------CCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC------YPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~------g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++.++|..++.. + .+|++||++..
T Consensus 112 i~G~~GsGKT~la~~la~~~~~~~~~gg~~--~~vlyi~~e~~ 152 (324)
T 2z43_A 112 FFGEFGSGKTQLCHQLSVNVQLPPEKGGLS--GKAVYIDTEGT 152 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTCCS--CEEEEEESSSC
T ss_pred EECCCCCCHhHHHHHHHHHHhcccccCCCC--CeEEEEECCCC
Confidence 45667999999999999987765 6 89999999875
No 160
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.31 E-value=0.024 Score=42.70 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=25.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-------CCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-------YPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-------g~~~~VllvD~ 36 (261)
++.+..|+||||++..++..+... + .+++.+++
T Consensus 47 ll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~--~~~~~~~~ 86 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKG--RKLVSLDL 86 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHHHHTTCSCTTTTT--CEEEEECH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCcchhcC--CeEEEEeH
Confidence 456778999999999999998773 4 55655544
No 161
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.27 E-value=0.072 Score=42.76 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCCChh----------HHHHh----hhcCCCeEEEEeCCCcchHHHHHHHHHHHHhC-C----CCeEEE
Q psy14655 105 GPCDILFIDTPPGTGDT----------HLSLI----QNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-N----IPVAGL 165 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~----------~~~~~----~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~----~~~~gi 165 (261)
.+..++|+|||+..+.. ....+ .. +|.+++|+..+..... ...+++.+.+. + -..+.+
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~--~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPG--PHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTC--CSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCC--CCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEE
Confidence 45689999999743211 11111 33 8999999987654332 23344444432 1 124668
Q ss_pred EEcCCCC
Q psy14655 166 VMNMNSV 172 (261)
Q Consensus 166 v~N~~~~ 172 (261)
+.|+.+.
T Consensus 145 v~nK~Dl 151 (247)
T 3lxw_A 145 FTRKEDL 151 (247)
T ss_dssp EECGGGG
T ss_pred EEchHhc
Confidence 8888553
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.23 E-value=0.03 Score=43.28 Aligned_cols=35 Identities=31% Similarity=0.245 Sum_probs=29.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+--|+||||++..||..+...| ..+.++|.|.-
T Consensus 30 l~G~sGsGKSTl~~~La~~l~~~G--~~~~~~d~d~~ 64 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQMLYQKG--KLCYILDGDNV 64 (200)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC--ceEEEecCchh
Confidence 456779999999999999998777 77788887743
No 163
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.11 E-value=0.042 Score=41.88 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=26.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++.+--|+||||++..|+..+...| .+++-.|
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g--~~~i~~d 35 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYLKQKG--YFVSLYR 35 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 3556789999999999999998888 8876554
No 164
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.08 E-value=0.027 Score=41.61 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
..+.-|+||||++..++..+...| .+++.++..
T Consensus 41 l~G~~G~GKTtL~~~i~~~~~~~g--~~~~~~~~~ 73 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQALEAG--KNAAYIDAA 73 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHHHTTT--CCEEEEETT
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC--CcEEEEcHH
Confidence 456789999999999999998878 889888764
No 165
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.06 E-value=0.0061 Score=55.68 Aligned_cols=66 Identities=11% Similarity=0.018 Sum_probs=34.9
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMS-------LQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+.... .....+.. ||.+|+|+..+... ...+...+..+...+.+.+-+|+|+++.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~--aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASS--ADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp ------CCEEESSSEEEEECCC---------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhh--CCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5678999999974321 12223333 89999998865421 3455566677777888767789999664
No 166
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.04 E-value=0.045 Score=41.87 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++.+--|+||||++..|+..|...| .+|+..+
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g--~~v~~~~ 35 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRG--KKVILKR 35 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCC--C-EEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CeEEEee
Confidence 3456679999999999999999888 9887654
No 167
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.93 E-value=0.035 Score=47.03 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh------cCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI------CYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~------~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++.++|...+. .+ .+|++||++..
T Consensus 127 I~G~~GsGKTtla~~la~~~~~~~~~gg~~--~~vlyi~~E~~ 167 (343)
T 1v5w_A 127 AFGEFRTGKTQLSHTLCVTAQLPGAGGYPG--GKIIFIDTENT 167 (343)
T ss_dssp EECCTTCTHHHHHHHHHHHTTSCBTTTBCC--CEEEEEESSSC
T ss_pred EECCCCCCHHHHHHHHHHHHhcccccCCCC--CeEEEEECCCC
Confidence 4567799999999999998665 46 89999999875
No 168
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.87 E-value=0.22 Score=38.97 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHH
Q psy14655 106 PCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQ 146 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~ 146 (261)
...+||+|.|=-+... ..... +|.+|+|..|....+.
T Consensus 111 ~~~~vv~d~pLL~E~~--~~~~~--~D~vi~V~ap~e~r~~ 147 (210)
T 4i1u_A 111 QGPYVIFVVPLLVESR--NWKAR--CDRVLVVDCPVDTQIA 147 (210)
T ss_dssp CSSSEEEECTTCTTCH--HHHHH--CSEEEEEECCHHHHHH
T ss_pred CCCEEEEEEecccccC--Ccccc--CCeEEEEECCHHHHHH
Confidence 4578999998544412 22233 8999998877655443
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.76 E-value=0.11 Score=40.21 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhh--cCCCeEEEEeCCC--cchHHHHHHHHHHH-Hh------CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQN--LFIDTAIIITIPD--TMSLQVAQRGYTMF-KK------LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~--~~ad~viiv~~~~--~~s~~~~~~~~~~l-~~------~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. ..+|.+++|++.+ ..++......+..+ .. .+.+ +.+|.|+.+.
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 132 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL 132 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHh
Confidence 568999999864321 11112211 0167888888754 34555555544433 21 2444 6699999775
No 170
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.73 E-value=0.07 Score=41.02 Aligned_cols=64 Identities=17% Similarity=0.091 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|... +..+...+...+..+... +. .+.+|.|+.+.
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 142 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRG--AAGALLVYDITSRETYNSLAAWLTDARTLASPNI-VVILCGNKKDL 142 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTC-EEEEEEECGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECCCc
Confidence 3688999998632 1122334444 8999999984 445666666666655442 33 46689999664
No 171
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.70 E-value=0.031 Score=42.09 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=24.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++++-.|+||||++..||..| + ...+.++.|
T Consensus 7 ~l~G~~GsGKST~a~~La~~l---~--~~~~~~~~D 37 (178)
T 1qhx_A 7 ILNGGSSAGKSGIVRCLQSVL---P--EPWLAFGVD 37 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHS---S--SCEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CCeEEeccc
Confidence 567889999999999988765 3 455666676
No 172
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.63 E-value=0.056 Score=41.38 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
.+--|+||||++..++..+...| ++|+++-
T Consensus 9 ~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~ 38 (184)
T 2orw_A 9 TGPMYSGKTTELLSFVEIYKLGK--KKVAVFK 38 (184)
T ss_dssp EESTTSSHHHHHHHHHHHHHHTT--CEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 44459999999999999999999 9999874
No 173
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=93.54 E-value=0.23 Score=42.49 Aligned_cols=64 Identities=9% Similarity=0.071 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEc-CCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMN-MNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N-~~~ 171 (261)
.++.+.|+|||+.... .....+.. +|.+++|++ +.....++...+..+...+.+.+-+++| +++
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~--aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~D 124 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNI--SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDS 124 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHT--CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHH--CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 5678999999976443 22333444 999999999 7777777888888888888887567888 855
No 174
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.50 E-value=0.049 Score=43.12 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh------cCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI------CYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~------~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++..+|...+. .+ .+|+++|....
T Consensus 29 i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~--~~~~~i~~~~~ 69 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAVTCQLPIDRGGGE--GKAMYIDTEGT 69 (243)
T ss_dssp EECCTTSSHHHHHHHHHHHTTSCGGGTCCS--SEEEEEESSSC
T ss_pred EECCCCCcHHHHHHHHHHHHhCchhcCCCC--CeEEEEECCCC
Confidence 4567899999999999986543 35 89999998864
No 175
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.48 E-value=0.055 Score=44.21 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=27.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc----------CCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC----------YPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~----------g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++.+++..++.. + .+|++++....
T Consensus 35 i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~--~~v~~~~~e~~ 79 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPT--GPVIYLPAEDP 79 (279)
T ss_dssp EEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCC--CCEEEEESSSC
T ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCC--ccEEEEECCCC
Confidence 45678999999999999987753 3 57888877643
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.47 E-value=0.054 Score=45.18 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=30.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+.-|+||||++..++..+...+ .+++.+++..
T Consensus 41 ll~G~~GtGKT~la~~i~~~~~~~~--~~~~~i~~~~ 75 (324)
T 1l8q_A 41 FIYGSVGTGKTHLLQAAGNEAKKRG--YRVIYSSADD 75 (324)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCC--CEEEEEEHHH
Confidence 3456779999999999999998888 9999998753
No 177
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.43 E-value=0.049 Score=46.32 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=29.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc--------CCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC--------YPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~--------g~~~~VllvD~D~ 38 (261)
++.+..|+||||++..++..+... + ..++.+++..
T Consensus 49 ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~--~~~~~i~~~~ 91 (384)
T 2qby_B 49 LFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKD--VKQAYVNCRE 91 (384)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTT--CEEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCC--ceEEEEECcc
Confidence 456788999999999999999776 7 8999999754
No 178
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.16 E-value=0.057 Score=42.50 Aligned_cols=27 Identities=11% Similarity=0.005 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 7 GGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 7 GGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
=|+||||.....+..+...| ++|+++-
T Consensus 37 M~sGKTT~Llr~~~r~~~~g--~kvli~k 63 (219)
T 3e2i_A 37 MFSGKSEELIRRLRRGIYAK--QKVVVFK 63 (219)
T ss_dssp TTSCHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CceEEEE
Confidence 48999999999999999888 9999983
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=93.10 E-value=0.3 Score=42.94 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=45.3
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQ-------VAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++|+|||+..............+|.+++|++.+..... .....+..+...+.+.+-+++|+++.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl 157 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS 157 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 567899999997544322222222228999999998765443 45555666666777767789999664
No 180
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=93.00 E-value=0.21 Score=43.72 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=46.5
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSL-------QVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++|+|||+..... ....+.. ||.+++|+..+.... .+....+..+...+.+.+-+++|+++.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~--aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQ--ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhh--CCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56799999999754322 2233333 999999999776543 356666777777788866689999774
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.95 E-value=0.087 Score=44.64 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=30.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc------CCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC------YPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~------g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++..++..+... + ..++.+++....
T Consensus 48 ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 90 (387)
T 2v1u_A 48 LLYGLTGTGKTAVARLVLRRLEARASSLGVL--VKPIYVNARHRE 90 (387)
T ss_dssp EECBCTTSSHHHHHHHHHHHHHHHHHHHTCC--EEEEEEETTTSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhccCCC--eEEEEEECCcCC
Confidence 467889999999999999999775 6 888888876543
No 182
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.84 E-value=0.068 Score=45.26 Aligned_cols=36 Identities=8% Similarity=0.038 Sum_probs=30.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc---CCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC---YPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~---g~~~~VllvD~D~~ 39 (261)
++.+..|+||||++..++..+... + ..++.+++...
T Consensus 49 li~G~~G~GKTtl~~~l~~~~~~~~~~~--~~~~~i~~~~~ 87 (386)
T 2qby_A 49 FIYGLTGTGKTAVVKFVLSKLHKKFLGK--FKHVYINTRQI 87 (386)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHTCSS--CEEEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhcCC--ceEEEEECCCC
Confidence 456788999999999999998876 6 89999997643
No 183
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.78 E-value=0.31 Score=42.49 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+.... .....+.. +|.+++|+..+..........+..+...+.+.+-+++|+++.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~--aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGAST--CDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTT--CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhh--CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 4567999999974432 22233344 999999999776655666666677777777767789999774
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.76 E-value=0.065 Score=43.54 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCCC-----hhHHHHhh----hcCCCeEEEEeCCCcchHHHH-HHHHHHHHhC-CC---CeEEEEEcCC
Q psy14655 105 GPCDILFIDTPPGTG-----DTHLSLIQ----NLFIDTAIIITIPDTMSLQVA-QRGYTMFKKL-NI---PVAGLVMNMN 170 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~-----~~~~~~~~----~~~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~~---~~~giv~N~~ 170 (261)
.++.+.|+|||+... ......+. ...+|.+++|...+..++... ..+++.+.+. +. ..+.+|+|+.
T Consensus 85 ~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~ 164 (270)
T 1h65_A 85 AGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHA 164 (270)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECC
T ss_pred CCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECc
Confidence 456899999996422 11111111 012788999965544333222 2445555432 32 2466999997
Q ss_pred CC
Q psy14655 171 SV 172 (261)
Q Consensus 171 ~~ 172 (261)
+.
T Consensus 165 Dl 166 (270)
T 1h65_A 165 QF 166 (270)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 185
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.69 E-value=0.065 Score=47.88 Aligned_cols=36 Identities=8% Similarity=0.097 Sum_probs=29.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..||..|.. .| ++.+-++|.|.
T Consensus 399 ~l~GlsGsGKSTIa~~La~~L~~~~g-~r~~~~lDgD~ 435 (511)
T 1g8f_A 399 VLGNSLTVSREQLSIALLSTFLQFGG-GRYYKIFEHNN 435 (511)
T ss_dssp EECTTCCSCHHHHHHHHHHHHTTSCS-CCCEEECCCTT
T ss_pred EecccCCCCHHHHHHHHHHHHHHhhc-CcceEEecCCC
Confidence 45566799999999999999997 64 37788899886
No 186
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.68 E-value=0.54 Score=37.98 Aligned_cols=64 Identities=14% Similarity=-0.022 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCCCh--------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCC-CCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTGD--------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLN-IPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~-~~~~giv~N~~~ 171 (261)
.++.+.|+|+|+..+. .....+....+|.+++|++.+.. .........+...+ .+ +.+++|+++
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 4567999999974431 12222211228999999986653 33334444455555 66 558999965
No 187
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.59 E-value=0.093 Score=45.00 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=29.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc------CCCCeEEEEecCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC------YPDKEIGILDADVF 39 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~------g~~~~VllvD~D~~ 39 (261)
.+.+|+||||++..++..+... + ..++.+++...
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 97 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLT--VKQAYVNAFNA 97 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCC--EEEEEEEGGGC
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCc--eeEEEEECCCC
Confidence 7889999999999999988764 5 78999998644
No 188
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.54 E-value=0.043 Score=42.42 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=24.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+..|+||||++..++..+...+....++.+++
T Consensus 42 ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred EEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 45678899999999999999876651123444444
No 189
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.46 E-value=0.067 Score=48.99 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=30.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+--|+||||++..|+..|...| .+++.+|.|.-
T Consensus 56 vLtGlsGSGKSTlAr~La~~L~~~G--~~~v~lDgD~i 91 (630)
T 1x6v_B 56 WLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDGDNI 91 (630)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEESHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEechHHh
Confidence 3456679999999999999999888 99999986643
No 190
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.45 E-value=0.089 Score=41.04 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+--|+||||.+..|+..|. .| .+|+..
T Consensus 9 G~dGsGKsTq~~~L~~~L~-~~--~~v~~~ 35 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRLV-KD--YDVIMT 35 (205)
T ss_dssp CCTTSCHHHHHHHHHHHHT-TT--SCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHH-CC--CCEEEe
Confidence 4569999999999999996 47 888765
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.35 E-value=0.041 Score=40.21 Aligned_cols=35 Identities=14% Similarity=-0.047 Sum_probs=27.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+..+.-|+|||++|..++....+.+ .+.+ ++|...
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~~~~~--~~~v-~~~~~~ 62 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFGRNAQ--GEFV-YRELTP 62 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSSTTTT--SCCE-EEECCT
T ss_pred EEECCCCCCHHHHHHHHHHhCCccC--CCEE-EECCCC
Confidence 3456789999999999988777767 7777 887643
No 192
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=92.33 E-value=0.33 Score=42.33 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=46.0
Q ss_pred CCCCEEEEeCCCCCChhH--HHHhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTH--LSLIQNLFIDTAIIITIPDTMSLQ-------VAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~--~~~~~~~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|||+...... ...+.. +|.+++|++.+..++. .+...+..+...+.+.+-+++|+++.
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~--aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQ--ADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSC--CSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhh--cCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 578899999997554332 223333 8999999998776555 45555566666777656689999764
No 193
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.23 E-value=0.096 Score=40.55 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=25.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
++.+--|+||||++..|+..+...+ .+|..+
T Consensus 13 ~l~G~~GsGKsT~~~~L~~~l~~~~--~~v~~~ 43 (215)
T 1nn5_A 13 VLEGVDRAGKSTQSRKLVEALCAAG--HRAELL 43 (215)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CcEEEe
Confidence 3455679999999999999998888 888544
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.20 E-value=0.096 Score=45.89 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=30.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+..|+||||++..+|..+....++.+++.+++..
T Consensus 134 ll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 134 FIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 4567889999999999999998873339999998764
No 195
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.99 E-value=0.16 Score=44.74 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCC---------CChh----HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPG---------TGDT----HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~---------~~~~----~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+..+.|+|||+. .+.. ....+.. ||.+++|++.+.........+.+.+.+.+.+ +.+|.|+.+
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~D 317 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR--SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWD 317 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH--CSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGG
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhh--CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChh
Confidence 3457889999862 1211 1123344 8999999987665555666777777776765 558999976
Q ss_pred C
Q psy14655 172 V 172 (261)
Q Consensus 172 ~ 172 (261)
.
T Consensus 318 l 318 (456)
T 4dcu_A 318 A 318 (456)
T ss_dssp G
T ss_pred c
Confidence 5
No 196
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.98 E-value=0.11 Score=52.89 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=33.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++.+..|+||||+|.++|...++.| .+|++||++....
T Consensus 387 lI~G~pGsGKTtLaLq~a~~~~~~G--~~vlyis~E~s~~ 424 (1706)
T 3cmw_A 387 EIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALD 424 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchH
Confidence 3567789999999999999999999 9999999998753
No 197
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.97 E-value=0.07 Score=40.38 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=26.3
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+..|+||||++..|+..+...| .++-.|-.|..
T Consensus 9 G~SGsGKSTL~~~L~~~~~~~g--~~~G~I~~dg~ 41 (171)
T 2f1r_A 9 GTSDSGKTTLITRMMPILRERG--LRVAVVKRHAH 41 (171)
T ss_dssp ESCHHHHHHHHHHHHHHHHHTT--CCEEEEEC---
T ss_pred CCCCCCHHHHHHHHHHHhhhcC--CceEEEEEcCc
Confidence 3679999999999999999888 88877777654
No 198
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.95 E-value=0.11 Score=41.99 Aligned_cols=68 Identities=22% Similarity=0.205 Sum_probs=35.6
Q ss_pred CCCCEEEEeCCCCCCh-----hHHHHhh----hcCCCeEEEEeCCCcchHHHH-HHHHHHHHhC-C---CCeEEEEEcCC
Q psy14655 105 GPCDILFIDTPPGTGD-----THLSLIQ----NLFIDTAIIITIPDTMSLQVA-QRGYTMFKKL-N---IPVAGLVMNMN 170 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~-----~~~~~~~----~~~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~---~~~~giv~N~~ 170 (261)
.+..+.|+|||+..+. .....+. ...+|.+++|...+....... ..+++.+... + ...+.+|.|+.
T Consensus 82 ~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~ 161 (262)
T 3def_A 82 GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHA 161 (262)
T ss_dssp TTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECT
T ss_pred CCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCc
Confidence 4568999999964221 1111111 011688999865544333222 2344444432 2 12466899997
Q ss_pred CC
Q psy14655 171 SV 172 (261)
Q Consensus 171 ~~ 172 (261)
+.
T Consensus 162 Dl 163 (262)
T 3def_A 162 QF 163 (262)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 199
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.88 E-value=0.13 Score=43.02 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=28.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh--cCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI--CYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~--~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++..|+..+.. .+ .+|.+|..|..
T Consensus 97 I~GpsGSGKSTl~~~L~~ll~~~~~~--~~v~~i~~D~f 133 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALLSRWPDH--PNVEVITTDGF 133 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSTTC--CCEEEEEGGGG
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCC--CeEEEEeeccc
Confidence 3567799999999999998875 34 68999999864
No 200
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.86 E-value=0.68 Score=33.42 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=43.6
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+++.|+|+|+.. .......+.. +|.+++|...+ ..+...+..+++.+... +.+ +.+|.|+++.
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl 120 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRT--GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDL 120 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEECCCchhhhHHHHHhhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhh
Confidence 45789999999754 3333444555 89999999854 45666666666655442 445 5699999774
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.83 E-value=0.15 Score=43.19 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=30.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~ 40 (261)
++.+..|+||||++..++..+... + ..++.+++....
T Consensus 48 li~G~~G~GKTtl~~~l~~~~~~~~~--~~~~~i~~~~~~ 85 (389)
T 1fnn_A 48 TLLGRPGTGKTVTLRKLWELYKDKTT--ARFVYINGFIYR 85 (389)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTSCC--CEEEEEETTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHHhhhcC--eeEEEEeCccCC
Confidence 456788999999999999998776 6 899999986553
No 202
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.78 E-value=0.13 Score=39.82 Aligned_cols=35 Identities=31% Similarity=0.282 Sum_probs=28.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+.-|+||||++..|+..+...| .++..|..|..
T Consensus 27 I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d~~ 61 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMDGF 61 (208)
T ss_dssp EECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESGGG
T ss_pred EECCCCCCHHHHHHHHHHHHhhcC--CceEEEecCCC
Confidence 456789999999999999998667 67778877743
No 203
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.74 E-value=0.12 Score=52.59 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=33.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+.-|+||||++.++|..+++.| .+|+++++....
T Consensus 736 lI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 736 EIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHAL 772 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCC
T ss_pred EEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchH
Confidence 4567789999999999999999998 999999998765
No 204
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.72 E-value=0.039 Score=42.88 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=26.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+.+--|+||||++..|+..+...| .+|.++.
T Consensus 5 i~G~~GsGKsTl~~~L~~~l~~~g--~~v~~~~ 35 (214)
T 1gtv_A 5 IEGVDGAGKRTLVEKLSGAFRAAG--RSVATLA 35 (214)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHEEE--EEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcC--CeEEEEe
Confidence 445669999999999999999888 8888775
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.27 E-value=0.14 Score=39.50 Aligned_cols=32 Identities=25% Similarity=0.142 Sum_probs=25.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++.+--|+||||++..|+..+...+ .++.++.
T Consensus 14 ~l~G~~GsGKST~~~~L~~~l~~~~--~~~~~~~ 45 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVEYLKNNN--VEVKHLY 45 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEe
Confidence 3455679999999999999998888 8885443
No 206
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.23 E-value=0.053 Score=45.47 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=26.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+..|+||||+|.++|.. .| .+|++++++
T Consensus 127 LI~GpPGsGKTtLAlqlA~~---~G--~~VlyIs~~ 157 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGEA---LG--GKDKYATVR 157 (331)
T ss_dssp EEECSCSSSHHHHHHHHHHH---HH--TTSCCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHh---CC--CCEEEEEec
Confidence 45678899999999999987 67 899999983
No 207
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.22 E-value=0.12 Score=42.57 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=30.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.+.-|+||||+|..+|..+...+ .++..+|+....
T Consensus 52 l~G~~GtGKt~la~~la~~~~~~~--~~~~~~~~~~~~ 87 (311)
T 4fcw_A 52 FLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYM 87 (311)
T ss_dssp EESCSSSSHHHHHHHHHHHHHSCG--GGEEEEEGGGCC
T ss_pred EECCCCcCHHHHHHHHHHHHcCCC--cceEEeeccccc
Confidence 456779999999999999998877 889999987543
No 208
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.19 E-value=0.13 Score=46.13 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=31.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..||..|...+ .++.+++.|.
T Consensus 39 vlvGlpGSGKSTia~~La~~L~~~~--~d~~v~s~D~ 73 (520)
T 2axn_A 39 VMVGLPARGKTYISKKLTRYLNWIG--VPTKVFNVGE 73 (520)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcC--CCeEEecccH
Confidence 4567789999999999999999888 9999999885
No 209
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.17 E-value=0.13 Score=42.30 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=27.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCC--CCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYP--DKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~--~~~VllvD~D 37 (261)
++.+.-|+|||++|..+|..+...+. ..+++.+++.
T Consensus 71 ll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 34567899999999999999988661 1267777654
No 210
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.12 E-value=0.1 Score=42.07 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=30.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+|||++|..++..+.+.+ .+++.|+|...
T Consensus 33 ll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~~ 68 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAAL 68 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGGS
T ss_pred EEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCCC
Confidence 4567789999999999998887777 89999998754
No 211
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.06 E-value=0.15 Score=44.78 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCC-eEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDK-EIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~-~Vllv 34 (261)
++.+..|+||||++..++..|...| . +|+++
T Consensus 49 li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~ 80 (459)
T 3upu_A 49 TINGPAGTGATTLTKFIIEALISTG--ETGIILA 80 (459)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEe
Confidence 4567789999999999999999988 6 77776
No 212
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.02 E-value=0.17 Score=39.64 Aligned_cols=31 Identities=26% Similarity=0.242 Sum_probs=26.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
+.+--|+||||++..|+..|...| .+|....
T Consensus 11 ~eG~~gsGKsT~~~~l~~~l~~~~--~~v~~~~ 41 (213)
T 4edh_A 11 LEGPEGAGKSTNRDYLAERLRERG--IEVQLTR 41 (213)
T ss_dssp EECSTTSSHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcC--CCccccc
Confidence 456679999999999999999999 9987653
No 213
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.97 E-value=0.15 Score=42.27 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=27.7
Q ss_pred cCCCCCcHHHHHHHHHHHHH--hcCCCCeEEEEecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMK--ICYPDKEIGILDADVFG 40 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la--~~g~~~~VllvD~D~~~ 40 (261)
.+.-|+||||++..|+..+. -.+ -+|.+|++|-..
T Consensus 86 ~G~~GsGKSTl~~~L~~~l~~~~~~--G~i~vi~~d~~~ 122 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQALLSRWPEH--RRVELITTDGFL 122 (308)
T ss_dssp EECTTSSHHHHHHHHHHHHTTSTTC--CCEEEEEGGGGB
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCCC--CeEEEEecCCcc
Confidence 45679999999999999886 334 578999988653
No 214
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.96 E-value=0.16 Score=46.18 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=28.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
++.+-.|+||||++..++..+...| .+|+++
T Consensus 208 ~I~G~pGTGKTt~i~~l~~~l~~~g--~~Vl~~ 238 (574)
T 3e1s_A 208 VLTGGPGTGKSTTTKAVADLAESLG--LEVGLC 238 (574)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcC--CeEEEe
Confidence 4567889999999999999999999 999987
No 215
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.90 E-value=0.17 Score=52.14 Aligned_cols=38 Identities=21% Similarity=0.113 Sum_probs=33.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++.+..|+||||++.++|..+++.| .+|++||+.....
T Consensus 387 lI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~ 424 (2050)
T 3cmu_A 387 EIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALD 424 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHH
Confidence 3567789999999999999999998 9999999998653
No 216
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.82 E-value=1.8 Score=36.86 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=26.2
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEec
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDA 36 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~ 36 (261)
+.+.-|+||||+...|+..+... . .+|+.++-
T Consensus 141 ivG~~GsGKTTll~~l~~~~~~~~~--g~I~~~e~ 173 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDYINQTKS--YHIITIED 173 (372)
T ss_dssp EECSSSSSHHHHHHHHHHHHHHHSC--CEEEEEES
T ss_pred EECCCCCCHHHHHHHHHhhcCcCCC--cEEEEecc
Confidence 45667999999999999999876 5 68888773
No 217
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.64 E-value=0.1 Score=38.65 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=19.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGI 33 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~Vll 33 (261)
++.+-.|+||||++..| .+.| ..++-
T Consensus 5 ~l~G~~GsGKsT~a~~L----~~~g--~~~i~ 30 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL----KERG--AKVIV 30 (179)
T ss_dssp EEECCTTSCHHHHHHHH----HHTT--CEEEE
T ss_pred EEECCCCCCHHHHHHHH----HHCC--CcEEE
Confidence 46788899999999888 5566 66543
No 218
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.63 E-value=0.13 Score=38.56 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=22.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..|+.. . .....|+.|.
T Consensus 6 ~i~G~~GsGKST~a~~L~~~----~--~~~~~i~~d~ 36 (181)
T 1ly1_A 6 LTIGCPGSGKSTWAREFIAK----N--PGFYNINRDD 36 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHH----S--TTEEEECHHH
T ss_pred EEecCCCCCHHHHHHHHHhh----c--CCcEEecHHH
Confidence 46778899999999988862 2 3456677653
No 219
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.58 E-value=0.27 Score=38.89 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=27.2
Q ss_pred cCCCCCcHHHHHHHHHHHHH-hcCCCCeEEEEecCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMK-ICYPDKEIGILDADVF 39 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la-~~g~~~~VllvD~D~~ 39 (261)
-+.-|+||||+...++.... ..+ ..+++++.+..
T Consensus 36 ~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~ 70 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEER 70 (251)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSC
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCC
Confidence 46679999999999997666 667 78888887653
No 220
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.51 E-value=0.082 Score=43.52 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=24.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++++-.|+||||++..|+..+ + .....||.|.
T Consensus 37 vl~G~sGsGKSTla~~L~~~~---~--~~~~~Is~D~ 68 (287)
T 1gvn_B 37 LLGGQPGSGKTSLRSAIFEET---Q--GNVIVIDNDT 68 (287)
T ss_dssp EEECCTTSCTHHHHHHHHHHT---T--TCCEEECTHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CCeEEEechH
Confidence 678889999999999988654 2 2456777754
No 221
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.46 E-value=0.12 Score=42.61 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=26.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCe-EEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKE-IGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~-VllvD~D~~ 39 (261)
+.+..|+||||++..|+..+...|++.+ +.+|..|..
T Consensus 36 I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred EECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 4677899999999999999986431133 444488753
No 222
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.46 E-value=0.16 Score=46.02 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=29.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||+|..|+..|..+| +.++.++|.|-
T Consensus 400 ~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~ 435 (573)
T 1m8p_A 400 FLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDT 435 (573)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHH
T ss_pred EeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHH
Confidence 3456779999999999999998765 37788998774
No 223
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.40 E-value=0.12 Score=38.28 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=22.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..||..+ | .. ++|.|.
T Consensus 5 ~l~G~~GsGKsT~~~~L~~~l---~--~~--~i~~d~ 34 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKLSKEL---K--YP--IIKGSS 34 (173)
T ss_dssp EEECSSSSSHHHHHHHHHHHH---C--CC--EEECCC
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--Ce--eecCcc
Confidence 456778999999999888665 4 44 466664
No 224
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=89.98 E-value=0.39 Score=42.31 Aligned_cols=64 Identities=19% Similarity=0.090 Sum_probs=34.7
Q ss_pred CCCCEEEEeCCCCCChh----------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT----------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~----------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
+++.+.|+|||+..... ....+.. +|.+++|++.+.........+++.+.. ..+-+|.|+.+..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~--aD~vl~VvD~s~~~~~~~~~i~~~l~~---~piivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT--ADLVLLTIDAATGWTTGDQEIYEQVKH---RPLILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC--------------------CCCCS--CSEEEEEEETTTCSCHHHHHHHHHHTT---SCEEEEEECTTSS
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhc--CCEEEEEeccCCCCCHHHHHHHHhccC---CcEEEEEECCCCC
Confidence 56788999998632210 0112233 899999998665433333445555543 2466899998864
No 225
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.90 E-value=0.12 Score=39.63 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=23.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+--|+||||++..|+..+ .| .+++.++.
T Consensus 8 ~l~G~~GsGKsT~~~~L~~~l--~g--~~~~~~~~ 38 (204)
T 2v54_A 8 VFEGLDKSGKTTQCMNIMESI--PA--NTIKYLNF 38 (204)
T ss_dssp EEECCTTSSHHHHHHHHHHTS--CG--GGEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHH--CC--CceEEEec
Confidence 345667999999999998877 46 77776653
No 226
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.88 E-value=0.083 Score=42.49 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=25.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+--|+||||++..|+..+ + ..+.++|.|.-
T Consensus 36 ~l~G~~GsGKSTla~~L~~~l---~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 36 LLGGQSGAGKTTIHRIKQKEF---Q--GNIVIIDGDSF 68 (253)
T ss_dssp EEESCGGGTTHHHHHHHHHHT---T--TCCEEECGGGG
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CCcEEEecHHH
Confidence 456778999999999998765 3 45677888854
No 227
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.85 E-value=0.15 Score=41.94 Aligned_cols=30 Identities=20% Similarity=0.034 Sum_probs=24.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
..+.-|+|||++|..+|..+ | .+++.+++.
T Consensus 41 l~GppGtGKT~la~aiA~~l---~--~~~i~v~~~ 70 (293)
T 3t15_A 41 IWGGKGQGKSFQCELVFRKM---G--INPIMMSAG 70 (293)
T ss_dssp EEECTTSCHHHHHHHHHHHH---T--CCCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHh---C--CCEEEEeHH
Confidence 34667999999999999888 6 888888863
No 228
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.79 E-value=1.1 Score=33.70 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC-----------CCCeEEEEEcCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL-----------NIPVAGLVMNMN 170 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----------~~~~~giv~N~~ 170 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+...+..+... +.+ +.+|.|+.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~ 137 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDN--IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKM 137 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTT--CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhc--CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECc
Confidence 578899999996432 122223334 89999999854 45677777666655443 455 55899997
Q ss_pred CC
Q psy14655 171 SV 172 (261)
Q Consensus 171 ~~ 172 (261)
+.
T Consensus 138 Dl 139 (199)
T 4bas_A 138 DA 139 (199)
T ss_dssp TS
T ss_pred CC
Confidence 75
No 229
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.72 E-value=1.1 Score=33.54 Aligned_cols=62 Identities=18% Similarity=0.034 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHh-CCCCeEEEEEcCCC
Q psy14655 107 CDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPDT-MSLQVAQRGYTMFKK-LNIPVAGLVMNMNS 171 (261)
Q Consensus 107 yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~~-~s~~~~~~~~~~l~~-~~~~~~giv~N~~~ 171 (261)
+.+.|+|+|+.. .......+.. +|.+++|...+. .+...+..++..+.. .+ ..+-+|.|+.+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRG--ATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcC--CCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC
Confidence 789999999642 2333444455 999999998654 456666666665554 34 45779999966
No 230
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.69 E-value=0.76 Score=35.48 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=40.0
Q ss_pred CCCCEEEEeCCCCCCh------------hHHHHhhhc-CCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTGD------------THLSLIQNL-FIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~------------~~~~~~~~~-~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.++.+.|+|||+.... .....+... .+|.+++|+..+...-.....+++.+...+.+ +.+|+|+.+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p-~i~v~nK~D 155 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKP-IHSLLTKCD 155 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCC-EEEEEECGG
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEeccc
Confidence 5689999999963221 111122221 15678888886543234445566777776666 558999965
Q ss_pred C
Q psy14655 172 V 172 (261)
Q Consensus 172 ~ 172 (261)
.
T Consensus 156 l 156 (223)
T 4dhe_A 156 K 156 (223)
T ss_dssp G
T ss_pred c
Confidence 3
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.68 E-value=0.16 Score=38.40 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 9 ~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 9 YLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 455678999999999998766
No 232
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.65 E-value=0.27 Score=42.13 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=29.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++-+.-|+||||+...++..+...| .+|+++|.+.
T Consensus 39 ~i~G~~G~GKs~~~~~~~~~~~~~~--~~~~~~D~~~ 73 (392)
T 4ag6_A 39 TILAKPGAGKSFTAKMLLLREYMQG--SRVIIIDPER 73 (392)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEESSC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC--CEEEEEeCCc
Confidence 3456779999999999999998888 9999998653
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.63 E-value=1.7 Score=36.85 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=25.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD 35 (261)
.+.+.-|+||||+...++..+... + .+++.++
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~~~~~~--~~i~t~e 159 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYLNNTKY--HHILTIE 159 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHHCC--CEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHhcccCCCC--cEEEEcc
Confidence 356778999999999999999876 5 6666554
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.60 E-value=0.12 Score=39.23 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..|+..+
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999998876
No 235
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=89.46 E-value=0.28 Score=42.94 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=34.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCcccccCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPD 51 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~~~~~~~~~~~ 51 (261)
+.-..=|.||||++..|+..|.+.| +++.+. ...||+.--||+..
T Consensus 51 ItPTPaGEGKtTttiGL~~aL~~lg--k~~~~~---lRePSlGP~FGiKG 95 (543)
T 3do6_A 51 VTPTPAGEGKTTTSIGLSMSLNRIG--KKSIVT---LREPSLGPTLGLKG 95 (543)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHTT--CCEEEE---ECCCCHHHHHHSCC
T ss_pred cCCCCCCCCccchHHHHHHHHHhcC--CeeEEE---EecCCCCCcCCccc
Confidence 3456679999999999999999999 888664 34456555566653
No 236
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.28 E-value=0.97 Score=41.30 Aligned_cols=68 Identities=15% Similarity=0.045 Sum_probs=45.7
Q ss_pred CCCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMS-------LQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.++|+|||+..............+|.+|+|+..+... .......+..+...+.+.+.+|+|+++.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 317 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 4678999999975443222222222289999999987642 2355566667777787767799999774
No 237
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.22 E-value=0.17 Score=42.10 Aligned_cols=37 Identities=11% Similarity=-0.011 Sum_probs=27.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh------------cC-CC-CeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI------------CY-PD-KEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~------------~g-~~-~~VllvD~D~~ 39 (261)
+.+..|+||||++.++|...+. .| .+ .+|++||++..
T Consensus 103 i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 103 FAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred EECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 4566799999999999987532 11 01 69999999875
No 238
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.20 E-value=2.2 Score=31.72 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=43.9
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+.. .......+.. +|.+++|.+.+ ..++..+...+..+... .-..+-+|.|+.+.
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTN--TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTT--CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcC--CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 45789999999753 2333344555 99999999854 45777777777666542 22346699999764
No 239
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.15 E-value=0.92 Score=33.94 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+++.|+|+|+... ......+.. +|.++++... +..+...+..+++.+... +.+ +.+|.|+++.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl 138 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRT--GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDL 138 (190)
T ss_dssp EEEEEEEEECCC-----------CTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCc--CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcC
Confidence 457899999997432 222233444 8999988884 455666666666655442 445 5699999774
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.14 E-value=0.2 Score=43.34 Aligned_cols=35 Identities=20% Similarity=0.061 Sum_probs=27.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh------cCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI------CYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~------~g~~~~VllvD~D~~ 39 (261)
+.+.-|+||||++.+++..... .+ .+|++||....
T Consensus 183 I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~--~~viyid~E~~ 223 (400)
T 3lda_A 183 LFGEFRTGKSQLCHTLAVTCQIPLDIGGGE--GKCLYIDTEGT 223 (400)
T ss_dssp EEESTTSSHHHHHHHHHHHTTSCGGGTCCS--SEEEEEESSSC
T ss_pred EEcCCCCChHHHHHHHHHHhccCcccCCCC--CcEEEEeCCCc
Confidence 3466799999999999877654 34 78999998754
No 241
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=89.05 E-value=0.16 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=23.0
Q ss_pred ccCCCCCcHHHHHHHHHH----HHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLAT----AMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~----~la~~g~~~~VllvD~D 37 (261)
+.+-||+||||+|..++. .....- .-++.|+..
T Consensus 157 I~G~gGvGKTtLA~~v~~~~~~~~~~~F--~~~~wv~vs 193 (549)
T 2a5y_B 157 LHGRAGSGKSVIASQALSKSDQLIGINY--DSIVWLKDS 193 (549)
T ss_dssp EECSTTSSHHHHHHHHHHHCSSTBTTTB--SEEEEEECC
T ss_pred EEcCCCCCHHHHHHHHHHhhhHHHhccC--CcEEEEEEC
Confidence 457899999999998885 333333 456666554
No 242
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.00 E-value=0.26 Score=50.95 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=32.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+--|+|||++|.++|....++| .+|+++|++...
T Consensus 1431 ll~GppGtGKT~LA~ala~ea~~~G--~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1431 EIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHAL 1467 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CcEEEEEccccc
Confidence 3567789999999999999999999 999999998653
No 243
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.96 E-value=0.3 Score=38.54 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=30.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~D~~~ 40 (261)
++.+--|+||||++..|+..|.. .| .+|.++--.|.+
T Consensus 25 ~~~G~~g~GKst~~~~l~~~l~~~~g--~~v~~~treP~~ 62 (223)
T 3ld9_A 25 TFEGIDGSGKTTQSHLLAEYLSEIYG--VNNVVLTREPGG 62 (223)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHC--GGGEEEEESSCS
T ss_pred EEECCCCCCHHHHHHHHHHHHhhccC--ceeeEeeeCCCC
Confidence 34567799999999999999999 99 888875555553
No 244
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.94 E-value=0.32 Score=39.83 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=26.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+..+.-|+|||+++..+|..+ + .+++.+++...
T Consensus 54 ll~G~~GtGKT~la~~la~~l---~--~~~~~i~~~~~ 86 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAKLA---N--APFIKVEATKF 86 (310)
T ss_dssp EEECCTTSSHHHHHHHHHHHH---T--CCEEEEEGGGG
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CCEEEEcchhc
Confidence 345778999999999999887 5 78888888654
No 245
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.77 E-value=0.28 Score=39.13 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCe-EEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKE-IGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~-Vllv 34 (261)
+.+--|+||||++..|+..|...| .+ |.+.
T Consensus 32 ~eG~~GsGKsT~~~~l~~~l~~~~--~~~~~~~ 62 (236)
T 3lv8_A 32 IEGLEGAGKSTAIQVVVETLQQNG--IDHITRT 62 (236)
T ss_dssp EEESTTSCHHHHHHHHHHHHHHTT--CCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhcC--CCeeeee
Confidence 445679999999999999999999 88 5544
No 246
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.68 E-value=2.2 Score=31.82 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=43.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC------CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL------NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+...+..+... +.+ +-+|.|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 138 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKE--GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDL 138 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGG--CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCc
Confidence 457899999997432 222334444 89999999854 45677776666555432 344 5689999764
No 247
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.59 E-value=0.19 Score=38.13 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=21.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..||..+ .| . -++|+|
T Consensus 14 ~l~G~~GsGKSTv~~~La~~l--~g--~--~~id~d 43 (184)
T 1y63_A 14 LITGTPGTGKTSMAEMIAAEL--DG--F--QHLEVG 43 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHS--TT--E--EEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHhc--CC--C--EEeeHH
Confidence 456677999999998887652 24 3 456776
No 248
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.58 E-value=0.35 Score=38.53 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=25.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+..|+||||+|..+|..+ + .+++.+++..
T Consensus 43 ll~G~~GtGKT~la~~la~~~---~--~~~~~~~~~~ 74 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVATEA---Q--VPFLAMAGAE 74 (262)
T ss_dssp EEESCTTSSHHHHHHHHHHHH---T--CCEEEEETTT
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CCEEEechHH
Confidence 355778999999999998865 5 7778887754
No 249
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.49 E-value=0.24 Score=39.26 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=23.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc----CCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC----YPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~----g~~~~Vllv 34 (261)
++.+--|+||||++..|+..|... | .+|.+.
T Consensus 29 ~~eG~~GsGKsT~~~~l~~~l~~~~~~~g--~~v~~~ 63 (227)
T 3v9p_A 29 TFEGIDGAGKTTHLQWFCDRLQERLGPAG--RHVVVT 63 (227)
T ss_dssp EEECCC---CHHHHHHHHHHHHHHHGGGT--CCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhccccc--eeeeee
Confidence 345677999999999999999988 9 888654
No 250
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.46 E-value=0.21 Score=38.36 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=20.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g 26 (261)
++.+--|+||||++..|+..+...|
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred EEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 4567789999999999999886544
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.44 E-value=0.22 Score=37.26 Aligned_cols=30 Identities=33% Similarity=0.292 Sum_probs=22.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..||..+ | . .++|.|.
T Consensus 8 ~i~G~~GsGKsTla~~La~~l---~--~--~~~d~d~ 37 (175)
T 1via_A 8 VFIGFMGSGKSTLARALAKDL---D--L--VFLDSDF 37 (175)
T ss_dssp EEECCTTSCHHHHHHHHHHHH---T--C--EEEEHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHc---C--C--CEEcccH
Confidence 456778999999999998765 3 3 3567663
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.38 E-value=0.22 Score=38.30 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=22.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..|+..+ | . .++|.|.
T Consensus 22 ~l~G~~GsGKSTla~~L~~~l---g--~--~~i~~d~ 51 (202)
T 3t61_A 22 VVMGVSGSGKSSVGEAIAEAC---G--Y--PFIEGDA 51 (202)
T ss_dssp EEECSTTSCHHHHHHHHHHHH---T--C--CEEEGGG
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--C--EEEeCCc
Confidence 456778999999999998876 4 3 3566664
No 253
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.38 E-value=1 Score=33.09 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=43.8
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC-----CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL-----NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+..+++.+... +.+.+.+|.|+.+.
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYG--AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 47899999997542 233444555 99999999854 45666666666655542 45557789999664
No 254
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=88.34 E-value=0.58 Score=41.23 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSL-------QVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+..... ....+.. +|.+|+|+..+...+ ......+..+...+.+.+-+++|+++.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~--aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQ--ADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC-----------TTS--CSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhccc--CCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 45689999999754322 2223333 999999999766533 244555566666787756799999775
No 255
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.29 E-value=0.32 Score=38.07 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=24.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCC-eEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDK-EIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~-~Vllv 34 (261)
+-+--|+||||.+..|+..|...| . .|.+.
T Consensus 8 ~eG~~gsGKsT~~~~l~~~l~~~~--~~~v~~~ 38 (213)
T 4tmk_A 8 IEGLEGAGKTTARNVVVETLEQLG--IRDMVFT 38 (213)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTT--CCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC--CCcceee
Confidence 345679999999999999999998 7 55443
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.29 E-value=0.23 Score=38.18 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=22.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..||..+ | .. ++|.|.
T Consensus 29 ~l~G~~GsGKsTl~~~La~~l---~--~~--~i~~d~ 58 (199)
T 3vaa_A 29 FLTGYMGAGKTTLGKAFARKL---N--VP--FIDLDW 58 (199)
T ss_dssp EEECCTTSCHHHHHHHHHHHH---T--CC--EEEHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHc---C--CC--EEcchH
Confidence 455778999999999999877 4 44 356653
No 257
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.22 E-value=0.98 Score=42.25 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=31.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC--CcccccCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP--SIPILMNL 49 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~--~~~~~~~~ 49 (261)
++.+.-|+|||++|..+|..+ + .+.+.+|+..... +.+.++|.
T Consensus 492 ll~G~~GtGKT~la~~la~~l---~--~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 492 LFAGPTGVGKTEVTVQLSKAL---G--IELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp EEECSTTSSHHHHHHHHHHHH---T--CEEEEEEGGGCSSSSCCSSSCCC
T ss_pred EEECCCCCcHHHHHHHHHHHh---c--CCEEEEechhhcchhhHhhhcCC
Confidence 345677999999999999988 6 8889999865432 23444444
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.16 E-value=2.2 Score=35.87 Aligned_cols=32 Identities=22% Similarity=0.423 Sum_probs=24.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
|+.+--|+||||++..||.. ...-+||+|..+
T Consensus 44 vI~GPTgsGKTtLa~~LA~~-------l~~eiIs~Ds~q 75 (339)
T 3a8t_A 44 VLMGATGTGKSRLSIDLAAH-------FPLEVINSDKMQ 75 (339)
T ss_dssp EEECSTTSSHHHHHHHHHTT-------SCEEEEECCSST
T ss_pred EEECCCCCCHHHHHHHHHHH-------CCCcEEcccccc
Confidence 45566799999999988853 345789999664
No 259
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.13 E-value=0.24 Score=36.68 Aligned_cols=30 Identities=23% Similarity=0.110 Sum_probs=22.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..|+..+ | .+ ++|.|.
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~l---~--~~--~i~~d~ 33 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRSL---N--IP--FYDVDE 33 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHHH---T--CC--EEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CC--EEECcH
Confidence 456778999999999988766 4 44 456663
No 260
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.13 E-value=0.23 Score=36.85 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=21.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..||..| | .. ++|.|
T Consensus 6 ~l~G~~GsGKsT~a~~La~~l---g--~~--~id~d 34 (173)
T 1e6c_A 6 FMVGARGCGMTTVGRELARAL---G--YE--FVDTD 34 (173)
T ss_dssp EEESCTTSSHHHHHHHHHHHH---T--CE--EEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--Cc--EEccc
Confidence 355678999999999998766 4 44 56766
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.12 E-value=0.23 Score=37.29 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=17.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+-.|+||||++..||..+
T Consensus 15 ~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 15 LLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHh
Confidence 456778999999999988766
No 262
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.11 E-value=0.22 Score=38.24 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=21.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..||..+ | .. ++|.|
T Consensus 24 ~l~G~~GsGKST~a~~La~~l---~--~~--~i~~d 52 (201)
T 2cdn_A 24 LLLGPPGAGKGTQAVKLAEKL---G--IP--QISTG 52 (201)
T ss_dssp EEECCTTSSHHHHHHHHHHHH---T--CC--EEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--Cc--EEehh
Confidence 456778999999999998876 4 55 45554
No 263
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.02 E-value=0.24 Score=37.36 Aligned_cols=30 Identities=40% Similarity=0.442 Sum_probs=22.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||+|..||..+ | .. ++|.|.
T Consensus 6 ~l~G~~GsGKsT~a~~La~~l---g--~~--~id~D~ 35 (184)
T 2iyv_A 6 VLVGLPGSGKSTIGRRLAKAL---G--VG--LLDTDV 35 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHH---T--CC--EEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--CC--EEeCch
Confidence 456778999999999998765 4 44 567774
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.99 E-value=0.28 Score=41.32 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=24.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++++-.|+||||+|..||..+ .+.+|++|..
T Consensus 11 ~I~GptgSGKTtla~~La~~l-------~~~iis~Ds~ 41 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKKF-------NGEIISGDSM 41 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHHT-------TEEEEECCSS
T ss_pred EEECCCcCcHHHHHHHHHHHc-------CCceeccccc
Confidence 467788999999999888755 3578999864
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.99 E-value=0.24 Score=37.80 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=17.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..|
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHHhc
Confidence 345678999999999999876
No 266
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.93 E-value=3.8 Score=29.43 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+..... ....+.. +|.+++|.+. +..++......+..+... +. .+-+|.|+.+.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQN--TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA-VLLVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTT--CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCC-eEEEEEECcCC
Confidence 46789999999653322 2223444 8999999984 455677777666655432 33 46689999774
No 267
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=87.88 E-value=0.48 Score=41.99 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+++.+.|+|||+.... .....+.. +|.+++|++.+..........+..+...+.+. -+++|+++.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~--aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADI--IDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTS--CCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhh--CCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 4578999999964321 12223333 89999999977654555666666777788887 689999775
No 268
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=87.87 E-value=1.4 Score=32.73 Aligned_cols=64 Identities=9% Similarity=-0.026 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.+++|.+. +..+...+...+..+.. .+.+ +.+|.|+.+.
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 139 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRD--AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDL 139 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 578999999864322 22233344 8999999985 45666666666666654 2444 6689999764
No 269
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=87.86 E-value=0.67 Score=40.00 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCEEEEeCCCCCChhHHHHhh-hcCCCeEEEEeCCCcch-HHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 107 CDILFIDTPPGTGDTHLSLIQ-NLFIDTAIIITIPDTMS-LQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 107 yd~IiiD~~~~~~~~~~~~~~-~~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
+.+.|+|||+... ....... ...+|.+++|+..+... ..++...+..+...+.+.+-+++|+++..
T Consensus 81 ~~i~iiDtPGh~~-f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHET-LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHHH-HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHHH-HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 6799999996332 1112211 11279999999976543 44555555666666766577999998763
No 270
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.78 E-value=0.32 Score=40.49 Aligned_cols=32 Identities=16% Similarity=-0.012 Sum_probs=25.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+-.|+||||++..++..+ + .+++++++..
T Consensus 34 ~i~G~~G~GKT~L~~~~~~~~---~--~~~~~~~~~~ 65 (357)
T 2fna_A 34 LVLGLRRTGKSSIIKIGINEL---N--LPYIYLDLRK 65 (357)
T ss_dssp EEEESTTSSHHHHHHHHHHHH---T--CCEEEEEGGG
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--CCEEEEEchh
Confidence 567788999999999988765 3 4578999864
No 271
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.71 E-value=0.26 Score=37.28 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=21.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..|+..+ | .. .||.|
T Consensus 7 ~l~G~~GsGKsT~a~~L~~~~---~--~~--~i~~d 35 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARIVEKY---G--YT--HLSAG 35 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHHH---C--CE--EEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--Ce--EEeHH
Confidence 456778999999999988765 4 44 46665
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.69 E-value=0.29 Score=39.34 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=22.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||+|..||..+ + . .+|+.|-
T Consensus 5 ~I~G~~GSGKSTla~~La~~~---~--~--~~i~~D~ 34 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQET---G--W--PVVALDR 34 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHH---C--C--CEEECCS
T ss_pred EEECCCCcCHHHHHHHHHhcC---C--C--eEEeccH
Confidence 467788999999999998765 3 3 3567664
No 273
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=87.65 E-value=0.48 Score=40.89 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMS-LQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+.+.|+|||+..... ....+.. +|.+++|+..+... ..++...+..+...+.+.+-+++|+++.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~--~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASL--MDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGG--CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhh--CCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 679999999643211 1222233 89999999977543 4455555555665666557788999764
No 274
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.64 E-value=0.36 Score=37.58 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHh------cCCCCeEEEEecCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKI------CYPDKEIGILDADV 38 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~------~g~~~~VllvD~D~ 38 (261)
-+.-|+||||++..++..+.. .+ .++++++...
T Consensus 31 ~G~nGsGKSTll~~l~g~~~~~~~~g~~~--~~~i~~~~~~ 69 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVMVQLPPEEGGLN--GSVIWIDTEN 69 (231)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGTCCS--CEEEEEESSS
T ss_pred ECCCCCCHHHHHHHHHHHHhcccccCCCC--CEEEEEECCC
Confidence 456799999999999987664 24 6788888764
No 275
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.61 E-value=0.36 Score=40.86 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=26.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc------CCCCeEEEEecCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC------YPDKEIGILDADVF 39 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~------g~~~~VllvD~D~~ 39 (261)
.+.-|+||||++..++..++.. | -+|++||....
T Consensus 137 ~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~--G~vi~i~~e~~ 176 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMVQLPPEEGGLN--GSVIWIDTENT 176 (349)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGTSCS--CEEEEEESSSC
T ss_pred ECCCCCCHHHHHHHHHHHhccchhcCCCC--CeEEEEeCCCC
Confidence 3556999999999999987532 3 58999998653
No 276
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=87.45 E-value=0.44 Score=42.79 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
+.-.|+|||.+++.|++.|+++| .+|..+-+||.-
T Consensus 11 g~~s~~gk~~~~~~l~~~l~~~g--~~v~~~k~~py~ 45 (545)
T 1s1m_A 11 GVVSSLGKGIAAASLAAILEARG--LNVTIMKLDPYI 45 (545)
T ss_dssp CSSSCSCHHHHHHHHHHHHHTTT--CCEEEEEEECCS
T ss_pred CcccCcchHHHHHHHHHHHHhCC--ceeeeeeccccc
Confidence 67789999999999999999999 999999998543
No 277
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.43 E-value=2 Score=31.78 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=43.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+...+..+... .-..+-+|.|+.+.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTN--TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTT--CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 457899999996432 222334444 89999999854 45777777766655432 22346689999764
No 278
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.36 E-value=0.28 Score=36.93 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 8 ~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 8 IFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999998765
No 279
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=87.27 E-value=0.21 Score=37.80 Aligned_cols=30 Identities=30% Similarity=0.172 Sum_probs=21.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+.+.-|+||||++..|+.. .+ ...+.+|.|
T Consensus 14 l~G~~GsGKSTl~~~La~~---~~--~g~i~i~~d 43 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANL---PG--VPKVHFHSD 43 (191)
T ss_dssp EEECTTSCHHHHHHHHHTC---SS--SCEEEECTT
T ss_pred EECCCCCCHHHHHHHHHhc---cC--CCeEEEccc
Confidence 4567799999999988764 33 455666655
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.08 E-value=0.29 Score=36.24 Aligned_cols=30 Identities=33% Similarity=0.423 Sum_probs=21.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+--|+||||++..||..| | .+ ++|+|.
T Consensus 11 ~l~G~~GsGKSTva~~La~~l---g--~~--~id~D~ 40 (168)
T 1zuh_A 11 VLIGFMGSGKSSLAQELGLAL---K--LE--VLDTDM 40 (168)
T ss_dssp EEESCTTSSHHHHHHHHHHHH---T--CC--EEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CC--EEEChH
Confidence 345667999999999888765 4 54 456664
No 281
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=87.02 E-value=1.6 Score=32.29 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=42.3
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..++..+...+..+... +.+ +.+|.|+.+.
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRS--GEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCCcccHHHHHHHhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 346899999997543 223344455 89999999854 45666666665554432 445 5589999664
No 282
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.98 E-value=0.29 Score=38.05 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC 25 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~ 25 (261)
++.+..|+||||++..++..+...
T Consensus 49 ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 49 LFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHHhcCC
Confidence 456788999999999999888654
No 283
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.89 E-value=1.4 Score=31.80 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+...+..+... +.+ +-+|.|+.+.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 121 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRS--GEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDL 121 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccc
Confidence 346899999997432 223344455 89999999854 55666666665555432 445 5699999664
No 284
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.77 E-value=0.43 Score=43.60 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=25.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc--CCCCeEEEE
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC--YPDKEIGIL 34 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~--g~~~~Vllv 34 (261)
++.+..|+||||+...+...|.+. +++.+|+++
T Consensus 168 vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 168 VISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp EEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 567889999999999999888743 212688775
No 285
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.67 E-value=0.38 Score=42.94 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=27.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+||||+|..+|..+ | .+++.+++...
T Consensus 81 LL~GppGtGKTtla~~la~~l---~--~~~i~in~s~~ 113 (516)
T 1sxj_A 81 MLYGPPGIGKTTAAHLVAQEL---G--YDILEQNASDV 113 (516)
T ss_dssp EEECSTTSSHHHHHHHHHHHT---T--CEEEEECTTSC
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--CCEEEEeCCCc
Confidence 456778999999999999887 7 89988887544
No 286
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.67 E-value=1.6 Score=31.53 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=42.9
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.++++... +..+...+...++.+.. .+.+ +-+|.|+.+.
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKN--GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDL 120 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccc
Confidence 45689999999743 2333344555 8999999974 45566666666655543 2445 5589999764
No 287
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.64 E-value=1.1 Score=32.57 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC-----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL-----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+...+..+.+. +.+ +.+|.|+.+.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl 121 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISK--GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDE 121 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHH--CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhccc--CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence 356799999997543 223334444 89999999854 44555556555555432 445 5689999664
No 288
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=86.59 E-value=0.93 Score=41.26 Aligned_cols=64 Identities=20% Similarity=0.105 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|||+..... ....+.. ||.+++|++.+..-..++...++.+...+.+ +-+++|+++.
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~--aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl 134 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGAL--ADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDR 134 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBS--CSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhh--CCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEeccccc
Confidence 3469999999754322 1122233 8999999997764445555666777777888 5589999775
No 289
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.58 E-value=1.4 Score=32.35 Aligned_cols=64 Identities=11% Similarity=0.042 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.+++|...+ ..+...+...+..+... +. .+-+|.|+.+.
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl 128 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRD--AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV-ALMLLGNKVDS 128 (180)
T ss_dssp EEEEEEEECCCC--------CCGGG--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECCST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-cEEEEEECccc
Confidence 468999999974322 22233444 89999999854 45666666666665542 33 46689999775
No 290
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.56 E-value=1.4 Score=33.44 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.++++... +..++..+...++.+... +.+ +.+|.|+.+.
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIG--VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADL 141 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTT--CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTC
T ss_pred EEEEEEEEECCCccchHHHHHHHHhc--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 567889999996432 222334444 8999999984 456777777777766543 444 5689999764
No 291
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.55 E-value=3.5 Score=30.90 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=42.4
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.+++|.+. +..++..+...+..+... +. .+-+|.|+.+.
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~-piilv~NK~Dl 142 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQN--TQGLIFVVDSNDRERVQESADELQKMLQEDELRDA-VLLVFANKQDM 142 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHT--CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC-eEEEEEECCCC
Confidence 46789999999643 2333344555 9999999985 455677777666655432 33 46689999764
No 292
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.54 E-value=0.27 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 16 ~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 16 FIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 356678999999999998876
No 293
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.49 E-value=0.48 Score=37.44 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=24.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+-+--|+||||++..|+..+.. | .+|+..
T Consensus 31 i~G~~GsGKsT~~~~l~~~l~~-~--~~~~~~ 59 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYHRLVK-D--YDVIMT 59 (229)
T ss_dssp EECCTTSCHHHHHHHHHHHHTT-T--SCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHHhc-C--CCceee
Confidence 4566799999999999999988 8 888654
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.48 E-value=0.32 Score=37.66 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||+|..||..+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999998765
No 295
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.45 E-value=0.46 Score=38.47 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=24.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+..|+||||++..+|..+ + .+++.+++.
T Consensus 55 ll~G~~GtGKT~la~~la~~~---~--~~~~~v~~~ 85 (285)
T 3h4m_A 55 LLYGPPGTGKTLLAKAVATET---N--ATFIRVVGS 85 (285)
T ss_dssp EEESSSSSSHHHHHHHHHHHT---T--CEEEEEEGG
T ss_pred EEECCCCCcHHHHHHHHHHHh---C--CCEEEEehH
Confidence 345778999999999988764 5 777777764
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.36 E-value=0.21 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=22.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+..|+||||++..|+..+ ..+.+|+.|..
T Consensus 26 i~G~~GsGKSTl~~~L~~~~------~~~~~i~~D~~ 56 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKHL------PNCSVISQDDF 56 (207)
T ss_dssp EEESTTSSHHHHHHHHHTTS------TTEEEEEGGGG
T ss_pred EECCCCCCHHHHHHHHHHhc------CCcEEEeCCcc
Confidence 34566999999988776432 25788888854
No 297
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.15 E-value=0.36 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 4 ~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999998876
No 298
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.12 E-value=0.3 Score=37.17 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+-.|+||||+|..||.. | .++++|+...
T Consensus 4 V~Gg~~SGKS~~A~~la~~----~--~~~~yiaT~~ 33 (180)
T 1c9k_A 4 VTGGARSGKSRHAEALIGD----A--PQVLYIATSQ 33 (180)
T ss_dssp EEECTTSSHHHHHHHHHCS----C--SSEEEEECCC
T ss_pred EECCCCCcHHHHHHHHHhc----C--CCeEEEecCC
Confidence 4566799999999998744 7 8899999865
No 299
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=86.06 E-value=0.29 Score=37.09 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=21.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..||..+ | .. ++|.|
T Consensus 13 ~l~G~~GsGKsT~~~~La~~l---~--~~--~i~~d 41 (196)
T 2c95_A 13 FVVGGPGSGKGTQCEKIVQKY---G--YT--HLSTG 41 (196)
T ss_dssp EEEECTTSSHHHHHHHHHHHH---C--CE--EEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--Ce--EEcHH
Confidence 345667999999999998766 4 44 56665
No 300
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=85.96 E-value=1.4 Score=33.32 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+...++.+... +.+ +.+|.|+.+.
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRK--ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhh--CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 346799999997543 223334455 89999999854 45666666666666543 444 6689999653
No 301
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.93 E-value=0.32 Score=37.79 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=17.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+.-|+||||++..||..+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 455677999999999998876
No 302
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=85.89 E-value=1.4 Score=33.11 Aligned_cols=66 Identities=14% Similarity=0.022 Sum_probs=43.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|... +..+...+...+..+.... -..+.+|.|+.+.
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl 140 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRG--SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 140 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTT--CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhcc--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 456899999996432 222334444 8999999985 4556777777777666532 2346689999664
No 303
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.88 E-value=0.54 Score=38.78 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=26.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+-.|+||||+|..++..+ + .++..+++...
T Consensus 42 ll~G~~GtGKT~la~~i~~~~---~--~~~~~~~~~~~ 74 (324)
T 1hqc_A 42 LLFGPPGLGKTTLAHVIAHEL---G--VNLRVTSGPAI 74 (324)
T ss_dssp EEECCTTCCCHHHHHHHHHHH---T--CCEEEECTTTC
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--CCEEEEecccc
Confidence 456788999999999999876 5 67777777654
No 304
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.86 E-value=2.6 Score=31.71 Aligned_cols=65 Identities=9% Similarity=0.041 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCC--hhH---HHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHh-----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTH---LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKK-----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~---~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~-----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ... ...+.. +|.+++|.+.+.........+.+.+.. .+. .+-+|.|+.+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~-piilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRG--TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM-NFEVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHT--CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTC-EEEEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhccccccc--CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC-cEEEEEecccc
Confidence 568999999997533 222 345555 999999998766444444444444432 234 46689999653
No 305
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.80 E-value=0.49 Score=40.19 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=25.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
..+.-|+||||+|..+|..+ + .++..+|+..-
T Consensus 77 l~Gp~GtGKT~la~~la~~l---~--~~~~~~~~~~~ 108 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAKHL---D--IPIAISDATSL 108 (376)
T ss_dssp EECCTTSSHHHHHHHHHHHT---T--CCEEEEEGGGC
T ss_pred EECCCCCCHHHHHHHHHHHh---C--CCEEEecchhh
Confidence 45667999999999999877 6 78888887653
No 306
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.78 E-value=0.3 Score=36.81 Aligned_cols=29 Identities=24% Similarity=0.191 Sum_probs=21.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..|+..+ | . ..+|.|
T Consensus 10 ~l~G~~GsGKsT~~~~L~~~l---~--~--~~i~~d 38 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIVRDF---G--W--VHLSAG 38 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHH---C--C--EEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHh---C--C--eEeeHH
Confidence 355678999999999888765 4 3 455665
No 307
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.75 E-value=0.47 Score=39.61 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=29.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcC-----CCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICY-----PDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g-----~~~~VllvD~D~~~ 40 (261)
++++.-|+|||+++..++..|.+.. ++.+++.|+|-...
T Consensus 49 li~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 49 YITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 5678999999999999999997531 11567778876543
No 308
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=85.74 E-value=0.28 Score=44.33 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=25.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH---HhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAM---KICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l---a~~g~~~~VllvD~D~~ 39 (261)
++.+-||+||||+|..++... ...- ...|+.++++..
T Consensus 151 ~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~v~wv~~~~~ 190 (591)
T 1z6t_A 151 TIHGMAGCGKSVLAAEAVRDHSLLEGCF-PGGVHWVSVGKQ 190 (591)
T ss_dssp EEECCTTSSHHHHHHHHHCCHHHHHHHC-TTCEEEEEEESC
T ss_pred EEEcCCCCCHHHHHHHHHhchhHHHhhC-CCceEEEECCCC
Confidence 467889999999999998654 2222 125788877654
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=85.70 E-value=0.32 Score=36.14 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=20.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+.+.-|+||||++..||..+ | . .++|.|
T Consensus 9 l~G~~GsGKSTl~~~La~~l---~--~--~~id~d 36 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQL---N--M--EFYDSD 36 (173)
T ss_dssp EECCTTSCHHHHHHHHHHHT---T--C--EEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHh---C--C--CEEecc
Confidence 45677999999998887654 3 3 456765
No 310
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=85.67 E-value=0.62 Score=41.87 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=31.3
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.-.|+|||.+++.|++.|+++| .+|..+-+||.
T Consensus 20 g~~s~~gk~~~~~~~~~~l~~~g--~~v~~~k~~py 53 (550)
T 1vco_A 20 GVVSSLGKGILTSSLGALLRARG--YRVTAIKIDPY 53 (550)
T ss_dssp CSSSCSCHHHHHHHHHHHHHTTT--CCEEEEEEECS
T ss_pred CcccCcchHHHHHHHHHHHHhCC--ceeeEeecccc
Confidence 66789999999999999999999 99999999864
No 311
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.58 E-value=0.55 Score=37.85 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=22.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+..+.-|+|||++|..+|..+ + .+++.+++
T Consensus 68 Ll~G~~GtGKT~la~~ia~~~---~--~~~~~i~~ 97 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAKIAEES---N--FPFIKICS 97 (272)
T ss_dssp EEECSTTSSHHHHHHHHHHHH---T--CSEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHh---C--CCEEEEeC
Confidence 355778999999999998873 5 66666654
No 312
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.57 E-value=0.33 Score=37.83 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 9 ~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 345667999999999999877
No 313
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.55 E-value=1.5 Score=32.81 Aligned_cols=65 Identities=15% Similarity=0.017 Sum_probs=42.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQ-RGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+. .++..+... +.+ +-+|.|+.+.
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 134 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPM--TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDL 134 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 346889999996432 222333444 89999999854 45666665 566666553 455 5599999775
No 314
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.55 E-value=0.26 Score=40.80 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=29.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+.-|+|||++|..++....+.+ .+.+.|+|...
T Consensus 29 Li~Ge~GtGKt~lAr~i~~~~~~~~--~~~v~v~~~~~ 64 (304)
T 1ojl_A 29 LIHGDSGTGKELVARALHACSARSD--RPLVTLNCAAL 64 (304)
T ss_dssp EEESCTTSCHHHHHHHHHHHSSCSS--SCCCEEECSSC
T ss_pred EEECCCCchHHHHHHHHHHhCcccC--CCeEEEeCCCC
Confidence 3557789999999999998877777 88999998754
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.54 E-value=0.39 Score=37.40 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 8 ~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 8 VLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 455778999999999998866
No 316
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.54 E-value=0.61 Score=37.19 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=22.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
..+.-|+||||++..+|..+ + .+++.+++.
T Consensus 50 l~G~~GtGKT~la~~la~~~---~--~~~~~i~~~ 79 (257)
T 1lv7_A 50 MVGPPGTGKTLLAKAIAGEA---K--VPFFTISGS 79 (257)
T ss_dssp EECCTTSCHHHHHHHHHHHH---T--CCEEEECSC
T ss_pred EECcCCCCHHHHHHHHHHHc---C--CCEEEEeHH
Confidence 45677999999999999865 4 566666543
No 317
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=85.51 E-value=2 Score=36.52 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=34.2
Q ss_pred CCEEEEeCCCCCChh----------HHHHhhhcCCCeEEEEeCCCcch---HHHHHHHHHHHHhC---CCCeEEEEEcCC
Q psy14655 107 CDILFIDTPPGTGDT----------HLSLIQNLFIDTAIIITIPDTMS---LQVAQRGYTMFKKL---NIPVAGLVMNMN 170 (261)
Q Consensus 107 yd~IiiD~~~~~~~~----------~~~~~~~~~ad~viiv~~~~~~s---~~~~~~~~~~l~~~---~~~~~giv~N~~ 170 (261)
..+.++||++..... ....+.. +|.+++|+..+... ........+.+... +.+ +-+|.|+.
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~--aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~ 302 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKY--SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKP-ILVTLNKI 302 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGG--SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCC-EEEEEECG
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHh--CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCC-EEEEEECC
Confidence 456778887643210 1112233 89999998854433 33333334445443 344 55889986
Q ss_pred CC
Q psy14655 171 SV 172 (261)
Q Consensus 171 ~~ 172 (261)
+.
T Consensus 303 Dl 304 (364)
T 2qtf_A 303 DK 304 (364)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 318
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.47 E-value=1.9 Score=31.16 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..++..+...+..+.... ...+.+|.|+.+.
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl 123 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRG--AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence 357899999997432 222333444 89999999854 456677776666655432 1235577799664
No 319
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=85.46 E-value=0.58 Score=43.02 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=27.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
+-+--|+|||++.+++...+.++| .+||++=.
T Consensus 210 I~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~ 241 (646)
T 4b3f_X 210 IHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAP 241 (646)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTT--CCEEEEES
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcC
Confidence 445579999999999999999999 99998753
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=85.43 E-value=0.26 Score=37.86 Aligned_cols=27 Identities=33% Similarity=0.383 Sum_probs=19.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+.+.-|+||||++..||. + | .++ +|+|
T Consensus 6 i~G~~GsGKSTl~~~L~~-~---g--~~~--i~~d 32 (204)
T 2if2_A 6 LTGNIGCGKSTVAQMFRE-L---G--AYV--LDAD 32 (204)
T ss_dssp EEECTTSSHHHHHHHHHH-T---T--CEE--EEHH
T ss_pred EECCCCcCHHHHHHHHHH-C---C--CEE--EEcc
Confidence 456679999999988887 4 6 655 4554
No 321
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.40 E-value=2.9 Score=31.36 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=43.5
Q ss_pred CCCCEEEEeCCCCCC-hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG-DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~-~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..++..+...++.+.. .+.+ +-+|.|+.+.
T Consensus 74 ~~~~~~l~Dt~G~~~~~~~~~~~~~--~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 144 (196)
T 2atv_A 74 EVVSMEILDTAGQEDTIQREGHMRW--GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADL 144 (196)
T ss_dssp EEEEEEEEECCCCCCCHHHHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCCCcccchhhhhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccc
Confidence 357899999997554 333444455 89999999854 4666666666655543 2444 5699999664
No 322
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.34 E-value=0.56 Score=41.96 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+.-|+||||++..++..+...| .+++++....
T Consensus 286 i~G~~GsGKSTLl~~l~g~~~~~G--~~vi~~~~ee 319 (525)
T 1tf7_A 286 ATGATGTGKTLLVSRFVENACANK--ERAILFAYEE 319 (525)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTT--CCEEEEESSS
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCC--CCEEEEEEeC
Confidence 456679999999999999998888 8898887653
No 323
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.24 E-value=0.83 Score=36.23 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=26.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
.+.=|.||||-+..++..+..+| ++|+++-
T Consensus 25 ~G~MgsGKTT~lL~~~~r~~~~g--~kvli~k 54 (234)
T 2orv_A 25 LGPMFSGKSTELMRRVRRFQIAQ--YKCLVIK 54 (234)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred ECCCCCcHHHHHHHHHHHHHHCC--CeEEEEe
Confidence 34458999999999999999999 9999987
No 324
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=85.23 E-value=0.7 Score=36.68 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=24.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc-----CCCCeEEEEecCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC-----YPDKEIGILDADV 38 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~-----g~~~~VllvD~D~ 38 (261)
.+.-|+||||++..|+..+... . .++.+++.|.
T Consensus 31 ~G~~GsGKSTl~k~L~~~lG~~~~~~~~--~~i~~v~~d~ 68 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMELLGQNEVEQRQ--RKVVILSQDR 68 (245)
T ss_dssp ECSTTSSHHHHHHHHHHHHTGGGSCGGG--CSEEEEEGGG
T ss_pred ECCCCCCHHHHHHHHHHHhchhcccccC--CceEEEeCCc
Confidence 4667999999999999877321 2 4677888774
No 325
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.14 E-value=1.5 Score=33.39 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHH-HHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVA-QRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~-~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|...+ ..++..+ ..+++.+... +.+ +-+|.|+.+.
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPD--TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDL 141 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTT--CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence 47899999996532 222233444 89999998854 4566666 4566666553 455 5599999664
No 326
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.06 E-value=3.4 Score=29.84 Aligned_cols=65 Identities=9% Similarity=0.011 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..++......+..+.. .+. .+-+|.|+.+.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 120 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSN--TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA-ILVVFANKQDM 120 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTT--CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTS
T ss_pred CCEEEEEEECCCChhhhHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC-EEEEEEECCCC
Confidence 357899999996432 222233344 89999999854 4567766666655443 233 46699999764
No 327
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=84.98 E-value=0.51 Score=39.48 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=24.1
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+--|+||||++..||..+ ...+||+|..
T Consensus 9 ~i~GptGsGKTtla~~La~~l-------~~~iis~Ds~ 39 (323)
T 3crm_A 9 FLMGPTAAGKTDLAMALADAL-------PCELISVDSA 39 (323)
T ss_dssp EEECCTTSCHHHHHHHHHHHS-------CEEEEEECTT
T ss_pred EEECCCCCCHHHHHHHHHHHc-------CCcEEeccch
Confidence 467788999999998888643 3578888854
No 328
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=84.96 E-value=2.4 Score=30.41 Aligned_cols=64 Identities=19% Similarity=0.101 Sum_probs=41.1
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.++++... +..+...+......+.+ .+.+ +-+|.|+.+.
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKN--GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDL 120 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhcc--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcc
Confidence 456899999974432 22334444 8999999884 44566666666654443 2445 6699999664
No 329
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=84.91 E-value=1.1 Score=40.84 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=43.1
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..|.+.|+|||+..+ ......+.. ||.+++|++.+.....+....+..+...+.+ +-+++|+++.
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~--aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl 135 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAA--CEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDL 135 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHH--CSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTS
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHH--CCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCc
Confidence 357899999997643 223445555 9999999987554333344444444556776 5589999775
No 330
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=84.90 E-value=0.64 Score=34.57 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=22.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+--|+||||++..|+..+ | . .++|.|.-
T Consensus 13 l~G~~GsGKSTl~~~l~~~~---g--~--~~i~~d~~ 42 (175)
T 1knq_A 13 LMGVSGSGKSAVASEVAHQL---H--A--AFLDGDFL 42 (175)
T ss_dssp EECSTTSCHHHHHHHHHHHH---T--C--EEEEGGGG
T ss_pred EEcCCCCCHHHHHHHHHHhh---C--c--EEEeCccc
Confidence 45677999999999988765 5 4 35677643
No 331
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=84.90 E-value=2.3 Score=31.72 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=43.2
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+...+..+.. .+.+ +.+|.|+.+.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 136 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRG--VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDL 136 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTT--CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHcc--CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCC
Confidence 567899999996432 222333444 89999999854 5677777766665543 3444 6689999764
No 332
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.89 E-value=0.21 Score=37.52 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=13.0
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 9 ~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEECCC----CHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 456778999999999887654
No 333
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=84.81 E-value=0.6 Score=38.90 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
=||+|||-++..|+..|. + +++.+|---+.+
T Consensus 46 vGGTGKTP~vi~L~~~L~--~--~~~~ilsRGYg~ 76 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLK--D--KRVCILSRGYKR 76 (315)
T ss_dssp SSCCSHHHHHHHHHHHTT--T--SCEEEEECCCSC
T ss_pred eCCCChHHHHHHHHHHHh--h--cCceEEeecccc
Confidence 399999999999999994 4 566666554443
No 334
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=84.80 E-value=0.92 Score=37.69 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=27.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+.-|+||||++..|+..+...+...+|.+|-.|..
T Consensus 95 I~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred EECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3467799999999999999875421256888877653
No 335
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.71 E-value=0.33 Score=37.60 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=16.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||+|..||..+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999887554
No 336
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=84.62 E-value=1.3 Score=36.44 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCC---------------hhHHHHhhhcCCCeEEEEeCC-Ccc-hHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14655 106 PCDILFIDTPPGTG---------------DTHLSLIQNLFIDTAIIITIP-DTM-SLQVAQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 106 ~yd~IiiD~~~~~~---------------~~~~~~~~~~~ad~viiv~~~-~~~-s~~~~~~~~~~l~~~~~~~~giv~N 168 (261)
.++++|+|||+... ......+.. +|.+++++.+ +.. .-.....+++.+...+.+ +-+|+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~-~i~v~N 206 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK--QNAIIVAVTPANTDLANSDALQLAKEVDPEGKR-TIGVIT 206 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHS--TTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSS-EEEEEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC--CCeEEEEEEecCcchhhhHHHHHHHHhCCCCCc-EEEEEc
Confidence 47899999997432 111223344 8988888875 222 112223455666655666 558899
Q ss_pred CCCCC
Q psy14655 169 MNSVL 173 (261)
Q Consensus 169 ~~~~~ 173 (261)
+.+..
T Consensus 207 K~Dl~ 211 (315)
T 1jwy_B 207 KLDLM 211 (315)
T ss_dssp CTTSS
T ss_pred CcccC
Confidence 97753
No 337
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=84.62 E-value=0.98 Score=40.69 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=40.9
Q ss_pred CEEEEeCCCCCC-------------hhHHHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 108 DILFIDTPPGTG-------------DTHLSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 108 d~IiiD~~~~~~-------------~~~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++|+|||+... ......+.. +|.+++|+.++.. .......+++.+...+.+ +.+|+|+++.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~--aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAER--VDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHH--CSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHh--CCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCc
Confidence 689999996443 122233444 8999999997663 344555666666655555 6699999664
No 338
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.59 E-value=0.7 Score=43.99 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=27.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-------cCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-------CYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-------~g~~~~VllvD~D~ 38 (261)
+..+..|+||||++..+|..+.. .+ .+++.+|+..
T Consensus 195 lL~G~pG~GKT~la~~la~~l~~~~~p~~l~~--~~~~~l~~~~ 236 (854)
T 1qvr_A 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKG--KRIVSLQMGS 236 (854)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTCSCTTSTT--CEEEEECC--
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCchhhcC--CeEEEeehHH
Confidence 44567899999999999999976 35 8899888743
No 339
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.56 E-value=2.5 Score=33.85 Aligned_cols=64 Identities=19% Similarity=0.069 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCCh------------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTGD------------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~------------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~ 171 (261)
.+..+.|+|+|+..+. .....+....+|.+++|++.+. ......+...+...+.+ +.+|+|+++
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~D 121 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMD 121 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChh
Confidence 4568999999975432 1122231122899999998665 34444556667677777 558999955
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=84.53 E-value=0.66 Score=35.70 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=23.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
.+.-|+||||++..|+..+. .++.+|+.|..
T Consensus 12 ~G~~GsGKSTl~~~l~~~~~-----~~i~~v~~d~~ 42 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTLG-----ERVALLPMDHY 42 (211)
T ss_dssp EESTTSSHHHHHHHHHHHHG-----GGEEEEEGGGC
T ss_pred ECCCCCCHHHHHHHHHHHhC-----CCeEEEecCcc
Confidence 35569999999998887762 25788888864
No 341
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.44 E-value=0.4 Score=36.88 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.7
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..|+..+
T Consensus 16 ~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 16 VVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEECCTTSCHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 456778999999999988766
No 342
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=84.38 E-value=1.5 Score=33.34 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=41.7
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHH-HHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVA-QRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~-~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+ ..+++.+... +.+ +.+|.|+.+.
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPD--TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL 141 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence 346889999986432 222233334 89999998844 4566666 4566666553 555 5599999664
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.05 E-value=0.49 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+.-|+||||++..||..+
T Consensus 20 ~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 20 VLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 455677999999999999876
No 344
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.04 E-value=0.4 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=17.5
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 9 ~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 455678999999999998876
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.01 E-value=4.8 Score=29.60 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=42.1
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.++++... +..+...+...+..+.. .+.+ +.+|.|+.+.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 121 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRT--GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDL 121 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccC
Confidence 4668889999743 3334444555 8999999884 45566666666665554 2344 5689999774
No 346
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=84.01 E-value=2.7 Score=31.13 Aligned_cols=66 Identities=11% Similarity=0.005 Sum_probs=42.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
+++.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+...+..+... .-..+-+|.|+.+.
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFES--TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTT--CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 457899999986421 112223334 89999999854 55677777666655432 22346699999774
No 347
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.94 E-value=0.38 Score=36.82 Aligned_cols=29 Identities=24% Similarity=0.169 Sum_probs=21.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..|+..+ | . ..+|.|
T Consensus 19 ~l~G~~GsGKsT~~~~L~~~~---g--~--~~i~~d 47 (203)
T 1ukz_A 19 FVLGGPGAGKGTQCEKLVKDY---S--F--VHLSAG 47 (203)
T ss_dssp EEECSTTSSHHHHHHHHHHHS---S--C--EEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHc---C--c--eEEeHH
Confidence 456778999999999888654 4 4 456666
No 348
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.89 E-value=0.32 Score=38.16 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.1
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..||..+
T Consensus 11 ~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEECTTSSHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHc
Confidence 456778999999999888754
No 349
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.79 E-value=0.5 Score=36.14 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=16.8
Q ss_pred CcccCCCCCcHHHHHHHHHHH
Q psy14655 1 MIASSKGGVGKSTTTVNLATA 21 (261)
Q Consensus 1 ~v~s~KGGvGKTT~a~~lA~~ 21 (261)
+|+++..|+||||+...|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 378899999999998776443
No 350
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=83.64 E-value=0.5 Score=38.59 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+--|+||||++..|+ . .| ..+ ||+|.
T Consensus 80 I~G~~GSGKSTva~~La-~---lg--~~~--id~D~ 107 (281)
T 2f6r_A 80 LTGISGSGKSSVAQRLK-N---LG--AYI--IDSDH 107 (281)
T ss_dssp EEECTTSCHHHHHHHHH-H---HT--CEE--EEHHH
T ss_pred EECCCCCCHHHHHHHHH-H---CC--CcE--EehhH
Confidence 45677999999999888 3 47 654 77764
No 351
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.57 E-value=0.79 Score=35.05 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+--|+||||++..|+..+ | . ..+|.|.
T Consensus 34 l~G~~GsGKSTl~~~L~~~~---g--~--~~i~~d~ 62 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADET---G--L--EFAEADA 62 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHH---C--C--EEEEGGG
T ss_pred EECCCCCCHHHHHHHHHHhh---C--C--eEEcccc
Confidence 45677999999999999877 6 4 4566664
No 352
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=83.57 E-value=1 Score=43.86 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=26.4
Q ss_pred cccCCCCCcHHHHHHHHHHH--HHh-cCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATA--MKI-CYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~--la~-~g~~~~VllvD~D~~ 39 (261)
.+.+-||+||||+|..++.. ... -. ..++.++++..
T Consensus 154 ~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd--~gV~WVsVs~~ 192 (1221)
T 1vt4_I 154 LIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIFWLNLKNC 192 (1221)
T ss_dssp EECCSTTSSHHHHHHHHHHHCHHHHHHS--SCEEEEECCCS
T ss_pred EEEcCCCccHHHHHHHHHHhhHHHHhCC--CcEEEEEeCCC
Confidence 35678999999999999853 333 33 56888988654
No 353
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.50 E-value=1.1 Score=36.08 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=25.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D 37 (261)
+.+.-|+||||+...++..+... . -+|.+.+-+
T Consensus 30 i~Gp~GsGKSTll~~l~g~~~~~~~--G~I~~~g~~ 63 (261)
T 2eyu_A 30 VTGPTGSGKSTTIASMIDYINQTKS--YHIITIEDP 63 (261)
T ss_dssp EECSTTCSHHHHHHHHHHHHHHHCC--CEEEEEESS
T ss_pred EECCCCccHHHHHHHHHHhCCCCCC--CEEEEcCCc
Confidence 45677999999999999998765 5 577776644
No 354
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=83.33 E-value=0.75 Score=40.47 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=28.3
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++-+--|+||||++..||..+...+ .++..++.|.
T Consensus 43 vlvGlpGsGKSTia~~La~~l~~~~--~~t~~~~~d~ 77 (469)
T 1bif_A 43 VMVGLPARGKTYISKKLTRYLNFIG--VPTREFNVGQ 77 (469)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhccC--CCceEEecch
Confidence 3456679999999999999998877 7877777553
No 355
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=83.14 E-value=0.75 Score=38.02 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=25.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.++.-|+||||++..+|..+ + .+++.+++..
T Consensus 52 L~~G~~G~GKT~la~~la~~l---~--~~~~~i~~~~ 83 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHDV---N--ADMMFVNGSD 83 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHHT---T--EEEEEEETTT
T ss_pred EeeCcCCCCHHHHHHHHHHHh---C--CCEEEEcccc
Confidence 456778999999999998776 6 7888888543
No 356
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.09 E-value=0.82 Score=38.65 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=24.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+.+.-|+|||++|..+|..+ + .+++.+++.
T Consensus 122 l~GppGtGKT~la~aia~~~---~--~~~~~i~~~ 151 (357)
T 3d8b_A 122 LFGPPGTGKTLIGKCIASQS---G--ATFFSISAS 151 (357)
T ss_dssp EESSTTSSHHHHHHHHHHHT---T--CEEEEEEGG
T ss_pred EECCCCCCHHHHHHHHHHHc---C--CeEEEEehH
Confidence 45677999999999998764 6 888888875
No 357
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=83.02 E-value=0.95 Score=38.23 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=24.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
..+.-|+|||++|..+|..+ + .+++.|++.
T Consensus 89 L~GppGtGKT~la~ala~~~---~--~~~~~v~~~ 118 (355)
T 2qp9_X 89 LYGPPGTGKSYLAKAVATEA---N--STFFSVSSS 118 (355)
T ss_dssp EECSTTSCHHHHHHHHHHHH---T--CEEEEEEHH
T ss_pred EECCCCCcHHHHHHHHHHHh---C--CCEEEeeHH
Confidence 45677999999999999877 5 778888764
No 358
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.00 E-value=0.62 Score=35.30 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.3
Q ss_pred cccCCCCCcHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLAT 20 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~ 20 (261)
++.+..|+||||+|..|..
T Consensus 20 li~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 20 LITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESSSSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 4567789999999987765
No 359
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.98 E-value=0.8 Score=37.29 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=23.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+||||++..+|..+ + .+.+.+++.
T Consensus 58 ll~Gp~GtGKT~la~~la~~~---~--~~~~~i~~~ 88 (297)
T 3b9p_A 58 LLFGPPGNGKTLLARAVATEC---S--ATFLNISAA 88 (297)
T ss_dssp EEESSSSSCHHHHHHHHHHHT---T--CEEEEEEST
T ss_pred EEECcCCCCHHHHHHHHHHHh---C--CCeEEeeHH
Confidence 345778999999999998765 5 677777764
No 360
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.98 E-value=0.95 Score=37.56 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=24.5
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+|||++|..+|..+ + .+++.|++.
T Consensus 55 Ll~GppGtGKT~la~aia~~~---~--~~~~~v~~~ 85 (322)
T 3eie_A 55 LLYGPPGTGKSYLAKAVATEA---N--STFFSVSSS 85 (322)
T ss_dssp EEECSSSSCHHHHHHHHHHHH---T--CEEEEEEHH
T ss_pred EEECCCCCcHHHHHHHHHHHH---C--CCEEEEchH
Confidence 345678999999999998775 5 788888763
No 361
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=82.93 E-value=2.5 Score=31.41 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=39.2
Q ss_pred CCCEEEEeCCCCCC------------hhHHHHhhh-cCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG------------DTHLSLIQN-LFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~------------~~~~~~~~~-~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
+..+.|+|+|+... ......+.. ..+|.+++++..+.........+.+.+...+.+ +.+|.|+.+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 145 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIP-FTIVLTKMDK 145 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 45688999996210 111112222 014788888886654444444566777777777 4589999663
No 362
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.90 E-value=0.74 Score=38.90 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=24.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
..+--|+|||++|..+|..+ + .+.+.+++-
T Consensus 56 l~GppGtGKT~la~~ia~~~---~--~~~~~~~~~ 85 (363)
T 3hws_A 56 LIGPTGSGKTLLAETLARLL---D--VPFTMADAT 85 (363)
T ss_dssp EECCTTSSHHHHHHHHHHHT---T--CCEEEEEHH
T ss_pred EECCCCCCHHHHHHHHHHHc---C--CCEEEechH
Confidence 44667999999999999887 5 788888775
No 363
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.89 E-value=0.46 Score=41.91 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=23.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcC-----CCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICY-----PDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g-----~~~~VllvD~D 37 (261)
+.-+--|+|||+++..+|..+...+ .+.+++.+|+.
T Consensus 205 LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 3456789999999999999987632 01555555544
No 364
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.85 E-value=0.77 Score=36.76 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
+..+.-|+|||++|..+|..+
T Consensus 48 ll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 48 LLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCBCSSCSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 456778999999999999876
No 365
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.61 E-value=0.38 Score=39.55 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=25.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+..|+||||++..+|..+...+.+..++.+++
T Consensus 46 ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 46 IISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred EEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 45678899999999999999865430134555554
No 366
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.58 E-value=0.35 Score=39.87 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=24.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
++.+..|+||||++..+|..+...+....++.+++
T Consensus 50 ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 50 LFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp EEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred EEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 45677899999999999999865430123444443
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=82.53 E-value=0.62 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.6
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||+|..|+..+
T Consensus 33 ~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 33 IFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456778999999999998665
No 368
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=82.49 E-value=0.48 Score=42.74 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=27.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+-+.-|+||||++..||..+...+ +.++.++|.|.
T Consensus 374 LiG~sGSGKSTLar~La~~L~~~~-G~~i~~lDgD~ 408 (552)
T 3cr8_A 374 FTGLSGAGKSTLARALAARLMEMG-GRCVTLLDGDI 408 (552)
T ss_dssp EEESSCHHHHHHHHHHHHHHHTTC-SSCEEEESSHH
T ss_pred EECCCCChHHHHHHHHHHhhcccC-CceEEEECCcH
Confidence 345679999999999999997654 24677888774
No 369
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.35 E-value=0.87 Score=37.89 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=24.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
..+.-|+|||++|..+|..+ .+ ..++.+++.
T Consensus 50 L~GppGtGKT~la~ala~~~--~~--~~~~~i~~~ 80 (322)
T 1xwi_A 50 LFGPPGTGKSYLAKAVATEA--NN--STFFSISSS 80 (322)
T ss_dssp EESSSSSCHHHHHHHHHHHT--TS--CEEEEEECC
T ss_pred EECCCCccHHHHHHHHHHHc--CC--CcEEEEEhH
Confidence 45677999999999999876 35 777878775
No 370
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.32 E-value=0.52 Score=38.59 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=21.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..|+..+ .| ..+||.|
T Consensus 6 ~l~G~~GsGKST~a~~L~~~~--~~----~~~i~~D 35 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAREFIAKN--PG----FYNINRD 35 (301)
T ss_dssp EEECCTTSSHHHHHHHHHHHS--TT----EEEECHH
T ss_pred EEECCCCCCHHHHHHHHHHhC--CC----cEEeccc
Confidence 466778999999998887632 23 4566666
No 371
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=82.17 E-value=0.96 Score=42.37 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=30.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
..+--|+|||++|..+|..+-..+ .+++.|||....
T Consensus 526 l~Gp~GtGKT~lA~ala~~l~~~~--~~~i~i~~s~~~ 561 (758)
T 3pxi_A 526 FLGPTGVGKTELARALAESIFGDE--ESMIRIDMSEYM 561 (758)
T ss_dssp EESCTTSSHHHHHHHHHHHHHSCT--TCEEEEEGGGGC
T ss_pred EECCCCCCHHHHHHHHHHHhcCCC--cceEEEechhcc
Confidence 446679999999999999997777 899999986543
No 372
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.16 E-value=4.1 Score=29.31 Aligned_cols=65 Identities=17% Similarity=0.158 Sum_probs=38.0
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITI-PDTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~-~~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.++|+|+.... .....+.. +|.++++.. .+..++..+...+..+... +.+ +-+|.|+.+.
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 118 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAM--GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDL 118 (166)
T ss_dssp EEEEEEEEECC-----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccc
Confidence 4567889999864332 22233344 898988887 4556777777776666543 444 5689999774
No 373
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=82.05 E-value=3.5 Score=31.20 Aligned_cols=65 Identities=15% Similarity=0.013 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.+++|.+.+ ..++..+..+++.+.... -..+-+|.|+.+.
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 146 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRS--ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDL 146 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTT--CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcc
Confidence 478999999964322 22333444 89999999854 456666666666665421 1245689999764
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=82.04 E-value=5.5 Score=29.07 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC-----CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL-----NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-----~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ...+.. +|.+++|.+. +..+...+..+++.+... .-..+.+|.|+.+.
T Consensus 53 ~~~l~i~Dt~G~~~---~~~~~~--~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 53 THLVLIREEAGAPD---AKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp EEEEEEEECSSSCC---HHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred EEEEEEEECCCCch---hHHHHh--CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 46788999986544 234555 8999999984 456777777755544432 12246689999764
No 375
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.04 E-value=0.64 Score=34.97 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+.-|+||||++..|+..+
T Consensus 9 ~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 456788999999999988765
No 376
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=81.91 E-value=2.6 Score=31.70 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCCEEEEeCCCCCChh--HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC-----CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGDT--HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL-----NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~~--~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-----~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+..... ....+.. +|.+++|.+. +..+...+..++..+... .-..+.+|.|+.+.
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 144 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNG--VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDL 144 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCC--CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhh--CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECccc
Confidence 5789999999642211 1122233 8999999985 445667777777766652 12246699999764
No 377
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=81.89 E-value=4.3 Score=30.46 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.... .....+.. +|.++++... +..++..+...+..+... +.+ +.+|.|+.+.
T Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (206)
T 2bov_A 60 EEVQIDILDTAGQEDYAAIRDNYFRS--GEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDL 131 (206)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred EEEEEEEEcCCChhhhHHHHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence 3468999999975432 22334445 8999999884 455666666666655442 445 5699999774
No 378
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.88 E-value=0.56 Score=35.70 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=20.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+.-|+||||++..||.. | .. ++|.|.
T Consensus 13 i~G~~GsGKST~~~~La~~----g--~~--~id~d~ 40 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRSW----G--YP--VLDLDA 40 (203)
T ss_dssp EEECTTSCHHHHHHHHHHT----T--CC--EEEHHH
T ss_pred EECCCCCCHHHHHHHHHHC----C--CE--EEcccH
Confidence 4567799999999888864 6 54 567763
No 379
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=81.75 E-value=0.98 Score=41.33 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=26.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD 35 (261)
++.+--|+||||+...++..|.+ .+ .+||++=
T Consensus 199 li~GppGTGKT~~~~~~i~~l~~~~~--~~ilv~a 231 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYHLARQGN--GPVLVCA 231 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTSSS--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCC--CeEEEEe
Confidence 34566799999999999999887 56 8888864
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.58 E-value=0.74 Score=35.31 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=21.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+.-|+||||++..|+..+ | .. +||+|--
T Consensus 17 ltG~~GSGKSTva~~L~~~l---g--~~--vid~D~~ 46 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNKY---G--AH--VVNVDRI 46 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHH---C--CE--EEEHHHH
T ss_pred EECCCCCCHHHHHHHHHHhc---C--CE--EEECcHH
Confidence 34567999999998888653 5 54 5777754
No 381
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=81.54 E-value=3.1 Score=30.58 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=40.7
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.... .....+.. +|.++++... +..+...+...+..+.. .+.+ +-+|.|+.+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 123 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSID--INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDL 123 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTC
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3477899999964321 12233344 8999999884 45666666666655532 2444 5589999774
No 382
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.52 E-value=0.88 Score=37.39 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=22.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEec
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDA 36 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~ 36 (261)
..+.-|+||||+|..+|..+ + ...+.|++
T Consensus 54 L~Gp~GtGKT~la~ala~~~---~--~~~i~v~~ 82 (301)
T 3cf0_A 54 FYGPPGCGKTLLAKAIANEC---Q--ANFISIKG 82 (301)
T ss_dssp EECSSSSSHHHHHHHHHHHT---T--CEEEEECH
T ss_pred EECCCCcCHHHHHHHHHHHh---C--CCEEEEEh
Confidence 45677999999999998765 4 67777765
No 383
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.39 E-value=2.7 Score=30.95 Aligned_cols=64 Identities=8% Similarity=-0.026 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.... .....+.. +|.+++|.+.+ ..++..+..++..+... +. .+-+|.|+.+.
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl 125 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRG--AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV-EKMILGNKCDV 125 (183)
T ss_dssp EEEEEEEEC---------CCTTTTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC-EEEEEEEC--C
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECccC
Confidence 478999999964321 11223334 89999999854 45667777777666543 33 46689999775
No 384
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=81.33 E-value=4.7 Score=34.94 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=42.5
Q ss_pred CEEEEeCCCCCCh---------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCCC
Q psy14655 108 DILFIDTPPGTGD---------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173 (261)
Q Consensus 108 d~IiiD~~~~~~~---------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~~ 173 (261)
.+.|+|||+.... .....+.. +|.+++|++. ........+++.+.+.+.+ +-+|+|+.+..
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~--aD~vllVvD~--~~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~ 153 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYR--ADCGILVTDS--APTPYEDDVVNLFKEMEIP-FVVVVNKIDVL 153 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTS--CSEEEEECSS--SCCHHHHHHHHHHHHTTCC-EEEECCCCTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhc--CCEEEEEEeC--CChHHHHHHHHHHHhcCCC-EEEEEeCcCCC
Confidence 7899999964321 12334444 9999999987 3334456777888887877 45999998764
No 385
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.01 E-value=0.93 Score=35.00 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la 23 (261)
++.+.-|+|||+.|..++..++
T Consensus 9 l~tG~pGsGKT~~a~~~~~~~~ 30 (199)
T 2r2a_A 9 LITGTPGSGKTLKMVSMMANDE 30 (199)
T ss_dssp EEECCTTSSHHHHHHHHHHHCG
T ss_pred EEEeCCCCCHHHHHHHHHHHHH
Confidence 3567789999999988876665
No 386
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=80.92 E-value=0.93 Score=35.20 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.1
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+-+.-|+||||++..|+..+
T Consensus 10 i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 34667999999999888765
No 387
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.81 E-value=0.77 Score=35.03 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=21.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+.+--|+||||++..||..+ | +-++|.|.
T Consensus 7 i~G~~GsGKst~~~~la~~l---g----~~~~d~d~ 35 (208)
T 3ake_A 7 IDGPSASGKSSVARRVAAAL---G----VPYLSSGL 35 (208)
T ss_dssp EECSTTSSHHHHHHHHHHHH---T----CCEEEHHH
T ss_pred EECCCCCCHHHHHHHHHHhc---C----Cceeccch
Confidence 45677999999999988765 3 34566663
No 388
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.69 E-value=1.2 Score=38.61 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=27.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+-+.-|+|||++...+...+.+.| .+|+++|..
T Consensus 58 i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpk 90 (437)
T 1e9r_A 58 VNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPN 90 (437)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEET
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCC
Confidence 345669999999888888888888 999999864
No 389
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=80.14 E-value=2 Score=34.78 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCCCC-------h--------hHHHHhhhcCCCeEE-EEeCCCc-chHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14655 106 PCDILFIDTPPGTG-------D--------THLSLIQNLFIDTAI-IITIPDT-MSLQVAQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 106 ~yd~IiiD~~~~~~-------~--------~~~~~~~~~~ad~vi-iv~~~~~-~s~~~~~~~~~~l~~~~~~~~giv~N 168 (261)
.++++|+|||+... . .....+.. ++.++ +++..+. .+......+++.+...+.+ +-+|+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~-~i~V~N 200 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDALKIAKEVDPQGQR-TIGVIT 200 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS--TTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSS-EEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC--CCeEEEEEecCCcchhhhHHHHHHHHhCCCCCe-EEEEEE
Confidence 48999999996321 1 11223333 66666 4555432 2323333455666555555 558999
Q ss_pred CCCC
Q psy14655 169 MNSV 172 (261)
Q Consensus 169 ~~~~ 172 (261)
+.+.
T Consensus 201 K~Dl 204 (299)
T 2aka_B 201 KLDL 204 (299)
T ss_dssp CGGG
T ss_pred cccc
Confidence 9664
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=80.12 E-value=3 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCCC-------hh-----HHHHhhh-cCCCeEEEEeCCCc-chHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGTG-------DT-----HLSLIQN-LFIDTAIIITIPDT-MSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~~-------~~-----~~~~~~~-~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
..+.|+|+|+... .. ....+.. ..+|.++++++.+. .+... ..+.+.+...+.+ +.+|.|+.+.
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~p-~i~v~nK~Dl 146 (195)
T 1svi_A 69 DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYYGIP-VIVIATKADK 146 (195)
T ss_dssp TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHTTCC-EEEEEECGGG
T ss_pred CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCC-EEEEEECccc
Confidence 3689999996211 00 1122222 00288888887544 33333 3455666666666 5589999664
No 391
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=79.97 E-value=0.71 Score=36.01 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=18.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+.-|+||||+|..||..+
T Consensus 62 li~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 62 VFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEESCGGGCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 456788999999999999987
No 392
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=79.80 E-value=3.7 Score=30.63 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|.+.+ ..+...+...+..+... +. .+.+|.|+.+.
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl 138 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRG--AAGALLVYDITRRETFNHLTSWLEDARQHSSSNM-VIMLIGNKSDL 138 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECccc
Confidence 4688999998642 2223344455 89999999854 45666666666666543 33 46689999764
No 393
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=79.76 E-value=1.2 Score=37.03 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=24.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+-.|+|||++|..+|..+ + .+...+++...
T Consensus 59 ll~G~~GtGKT~la~~ia~~~---~--~~~~~~~~~~~ 91 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANIISYEM---S--ANIKTTAAPMI 91 (338)
T ss_dssp EEECSTTSSHHHHHHHHHHHT---T--CCEEEEEGGGC
T ss_pred EEECcCCCCHHHHHHHHHHHh---C--CCeEEecchhc
Confidence 456778999999999997653 5 67777777543
No 394
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.70 E-value=2.5 Score=31.59 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=41.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC-----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL-----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+...+..+... +.+ +.+|.|+.+.
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl 126 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISK--GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDE 126 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHH--CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 456799999996432 223334444 89999999854 45666555555544432 344 6699999775
No 395
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=79.61 E-value=2.1 Score=32.34 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+. +..++..+..++..+.... -..+-+|.|+.+.
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRG--AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CC--CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 36799999997432 222233344 8999999984 4567777777777776642 1245688999775
No 396
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=79.59 E-value=5.4 Score=29.01 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.4
Q ss_pred CCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHH-Hh---CCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMF-KK---LNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l-~~---~~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+.. .......+.. +|.+++|...+ ..+...+...+..+ .. .+.+ +-+|.|+.+.
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRA--GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHH--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhh--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4678999999743 2233444555 89999999854 45666666655544 22 2444 5699999664
No 397
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=79.55 E-value=7 Score=29.14 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=42.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.++.+.++|+|+... ......+.. +|.+++|.+. +..++......+..+.. .+.+ +-+|.|+.+.
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 136 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPE--VNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDA 136 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTT--CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhc--CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCC
Confidence 457889999996432 122233344 8999999985 44577777776665543 2444 6699999764
No 398
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.42 E-value=1.2 Score=37.15 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++++--|+||||++..||..+ ..-+|.+|..
T Consensus 7 ~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~ 37 (322)
T 3exa_A 7 AIVGPTAVGKTKTSVMLAKRL-------NGEVISGDSM 37 (322)
T ss_dssp EEECCTTSCHHHHHHHHHHTT-------TEEEEECCGG
T ss_pred EEECCCcCCHHHHHHHHHHhC-------ccceeecCcc
Confidence 567778999999999888543 3467888854
No 399
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=79.38 E-value=0.76 Score=38.63 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=18.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g 26 (261)
-+-=|+||||++..|+..|...+
T Consensus 13 EG~dGaGKTT~~~~La~~L~~~~ 35 (334)
T 1p6x_A 13 DGVYGIGKSTTGRVMASAASGGS 35 (334)
T ss_dssp ECSTTSSHHHHHHHHHSGGGCSS
T ss_pred ECCCCCCHHHHHHHHHHHhccCC
Confidence 34569999999999999987643
No 400
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=79.27 E-value=0.93 Score=35.92 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.0
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+-+.-|+||||++..|+..+
T Consensus 32 l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 32 ILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999776
No 401
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=79.24 E-value=8.1 Score=29.04 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=42.4
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.++++.++|+|+... ......+.. +|.+++|.+. +..++..+...+..+.+ .+.+ +-+|.|+.+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPA--INGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGG--CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 457899999996432 222234445 8999999985 45577777776665543 2445 5689999764
No 402
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=79.19 E-value=3.3 Score=30.47 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHhC--CCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQ-RGYTMFKKL--NIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~--~~~~~giv~N~~~ 171 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+. .++..+... +.+ +-+|.|+.+
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 120 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQ--TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 120 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccC--CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccc
Confidence 356788999996432 112223333 89999999854 45666665 456666543 445 558999855
No 403
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=79.15 E-value=1.3 Score=41.74 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=26.2
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD 35 (261)
++.+-.|+||||+...++..|.+ .+ .+||++=
T Consensus 375 lI~GppGTGKT~ti~~~i~~l~~~~~--~~ilv~a 407 (800)
T 2wjy_A 375 LIQGPPGTGKTVTSATIVYHLARQGN--GPVLVCA 407 (800)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTCS--SCEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCC--CcEEEEc
Confidence 45567799999999999999887 56 8888763
No 404
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.14 E-value=0.67 Score=35.96 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=14.8
Q ss_pred cccCCCCCcHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLAT 20 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~ 20 (261)
++.+.-|+||||+|..|+.
T Consensus 38 lI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 38 LITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEECCCTTTTHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4567889999999876653
No 405
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=78.96 E-value=5.3 Score=31.90 Aligned_cols=65 Identities=12% Similarity=-0.046 Sum_probs=40.7
Q ss_pred CCCCEEEEeCCCCCChh--------HHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT--------HLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~--------~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+..+.. ....+....+|.+++|++.+... ....+...+...+.+ +-+++|+++.
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~~~p-vilv~NK~Dl 122 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE--QSLYLLLEILEMEKK-VILAMTAIDE 122 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 46789999999754311 12233212289999999866532 233455566666777 5589999664
No 406
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=78.93 E-value=4.4 Score=30.15 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=43.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+...+..+.... -..+.+|.|+.+.
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRG--AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTT--CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence 456789999986432 233344455 89999999854 456666666666665532 2246689999664
No 407
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=78.92 E-value=4.4 Score=29.62 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=38.6
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHhC--CCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQ-RGYTMFKKL--NIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~--~~~~~giv~N~~~ 171 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+. .+++.+... +.+ +-+|.|+.+
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 123 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRG--ADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLD 123 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechh
Confidence 356778999996432 222333444 89999999854 55666665 466666553 444 558999855
No 408
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.90 E-value=2.2 Score=36.74 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 6 KGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 6 KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
--|+||||++..+|..+++++++..++++=++...
T Consensus 182 ~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp CSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCH
T ss_pred CCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCCh
Confidence 35999999999999999987644566666666544
No 409
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.89 E-value=0.74 Score=38.28 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=24.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++++--|+||||++..||..+ ..-+|.+|..
T Consensus 14 ~i~GptgsGKt~la~~La~~~-------~~~iis~Ds~ 44 (316)
T 3foz_A 14 FLMGPTASGKTALAIELRKIL-------PVELISVDSA 44 (316)
T ss_dssp EEECCTTSCHHHHHHHHHHHS-------CEEEEECCTT
T ss_pred EEECCCccCHHHHHHHHHHhC-------CCcEEecccc
Confidence 567888999999999988653 3457888854
No 410
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=78.86 E-value=4 Score=31.39 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhCC--CCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKLN--IPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+|+|... +..+...+..++..+.... -..+.+|.|+.+.
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl 130 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRG--AVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDL 130 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTT--CCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhcc--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 46889999997432 222333444 8999999985 4456677777666665431 2246689999764
No 411
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=78.78 E-value=0.88 Score=35.12 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=16.8
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+--|+||||++..|+..+
T Consensus 12 ~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEECCTTSCHHHHHHHHHHST
T ss_pred EEECcCCCCHHHHHHHHHhhC
Confidence 456778999999998887654
No 412
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=78.66 E-value=1.1 Score=42.61 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=31.0
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFG 40 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~ 40 (261)
++.+.-|+|||++|..+|..+...+ .+++.|||....
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~ 628 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYM 628 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCC
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhcc
Confidence 3456779999999999999998877 899999987543
No 413
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=78.63 E-value=0.57 Score=39.30 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=15.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g 26 (261)
-+-=|+||||++..|+..|...|
T Consensus 10 EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 10 DGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp CSCTTSSHHHHHHHHTC----CC
T ss_pred ECCCCCCHHHHHHHHHHHhhhCC
Confidence 34569999999999998886543
No 414
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=78.52 E-value=4 Score=30.26 Aligned_cols=66 Identities=12% Similarity=0.057 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+.+ ..++..+...+..+... .-..+-+|.|+.+.
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSD--TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTT--CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhc--CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 457899999986432 222223344 89999999854 45677766666554432 12246689999774
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.42 E-value=0.77 Score=38.38 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=25.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+.-|+||||++..+|..+...+ .++.++.++.
T Consensus 50 ll~Gp~G~GKTtla~~la~~l~~~~--~~~~~~~~~~ 84 (340)
T 1sxj_C 50 LFYGPPGTGKTSTIVALAREIYGKN--YSNMVLELNA 84 (340)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHTTS--HHHHEEEECT
T ss_pred EEECCCCCCHHHHHHHHHHHHcCCC--ccceEEEEcC
Confidence 3457789999999999999987554 4544555544
No 416
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=78.33 E-value=1.9 Score=33.02 Aligned_cols=63 Identities=14% Similarity=0.039 Sum_probs=40.7
Q ss_pred CCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 107 CDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 107 yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
+.+.|+|+|+... ......+.. +|.+++|.+. +..+...+...+..+... +.+ +.+|.|+.+.
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIG--ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAP-IVVCANKIDI 129 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred EEEEEEecCCchhhchHHHHHhhc--CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 6799999996421 222333444 8999999985 445566666655555442 445 5589999775
No 417
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=78.16 E-value=1.1 Score=33.80 Aligned_cols=19 Identities=53% Similarity=0.651 Sum_probs=15.7
Q ss_pred cccCCCCCcHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLAT 20 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~ 20 (261)
++.+.-|+||||++..|+.
T Consensus 6 ~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHhc
Confidence 3457789999999999975
No 418
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=77.75 E-value=3.7 Score=30.80 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQ-RGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+. .+++.+... +.+ +.+|.|+.+.
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTN--TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCC--CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 46788999996432 222233444 89999999854 45666665 466655543 445 5589999664
No 419
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=77.69 E-value=0.97 Score=34.43 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.3
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+.+.-|+||||++..|+..+
T Consensus 11 l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 11 LSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EECSTTSCHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 45678999999998887665
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.68 E-value=1.4 Score=33.98 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=20.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+--|+||||++..|+. .| .. ++|.|
T Consensus 8 ~i~G~~GSGKST~~~~L~~----lg--~~--~id~D 35 (218)
T 1vht_A 8 ALTGGIGSGKSTVANAFAD----LG--IN--VIDAD 35 (218)
T ss_dssp EEECCTTSCHHHHHHHHHH----TT--CE--EEEHH
T ss_pred EEECCCCCCHHHHHHHHHH----cC--CE--EEEcc
Confidence 3456779999999988875 46 54 56776
No 421
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=77.65 E-value=21 Score=30.21 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=23.5
Q ss_pred CCCEEEEeCCCCCC---------hhHHHHhhhcCCCeEEEEeCCCc
Q psy14655 106 PCDILFIDTPPGTG---------DTHLSLIQNLFIDTAIIITIPDT 142 (261)
Q Consensus 106 ~yd~IiiD~~~~~~---------~~~~~~~~~~~ad~viiv~~~~~ 142 (261)
...+.|+|+|+... ......+.. ||.+++|+....
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~--ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIRE--VAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHT--CSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHh--CCEEEEEEECCC
Confidence 35699999996432 223334455 999999998653
No 422
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=77.52 E-value=1.4 Score=38.22 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=26.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+.--|-.||||++.-++..|...| ++|.++
T Consensus 42 I~VtGTnGKtTT~~~l~~iL~~~G--~~vg~~ 71 (428)
T 1jbw_A 42 IHVTGTNGKGSAANAIAHVLEASG--LTVGLY 71 (428)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHHCC--CCEEEE
Confidence 344577899999999999999999 999876
No 423
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=77.50 E-value=3.7 Score=31.16 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHH-HHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQ-RGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~-~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+. +..++..+. .++..+... +.+ +-+|.|+.+.
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 125 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRG--ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDL 125 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHh
Confidence 457899999996532 222233444 8999999985 455666665 566666553 455 5599998653
No 424
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.48 E-value=1.6 Score=33.23 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=19.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g 26 (261)
-+.-|+||||+..-++..+...|
T Consensus 7 ~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHHHHTT
T ss_pred ECCCCChHHHHHHHHHhhcccCC
Confidence 36679999999999999998333
No 425
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.40 E-value=1.6 Score=38.27 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la 23 (261)
+..+.-|+|||++|..+|..+.
T Consensus 67 Ll~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 67 LLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp EEECCTTSSHHHHHHHHHHHHC
T ss_pred EEECCCcCCHHHHHHHHHHHhC
Confidence 3567789999999999999984
No 426
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=77.40 E-value=0.79 Score=39.13 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=15.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICY 26 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g 26 (261)
-+-=|+||||++..|+..|...|
T Consensus 55 EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 55 DGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CSSTTSSHHHHHHHHHC----CC
T ss_pred ECCCCCCHHHHHHHHHHHhhhCC
Confidence 34569999999999998886543
No 427
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=77.35 E-value=3.9 Score=33.57 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=40.8
Q ss_pred CCCCEEEEeCCCCCC-------hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC-----CCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG-------DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL-----NIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~-------~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~giv~N~~~ 171 (261)
+.+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+..+.+.+... +. .+.+|.|+.+
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~--ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~-piilv~NK~D 126 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQM--VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA-KIFVLLHKMD 126 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTT--CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTC-EEEEEEECGG
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhcc--CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCC-eEEEEEeccc
Confidence 457899999986432 112233344 89999999854 45666665554444331 44 4668999976
Q ss_pred C
Q psy14655 172 V 172 (261)
Q Consensus 172 ~ 172 (261)
.
T Consensus 127 l 127 (307)
T 3r7w_A 127 L 127 (307)
T ss_dssp G
T ss_pred c
Confidence 4
No 428
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=77.27 E-value=1.8 Score=34.97 Aligned_cols=36 Identities=3% Similarity=-0.065 Sum_probs=29.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGP 41 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~~~ 41 (261)
++-.|.||||++.+++...+++| .+++++-++....
T Consensus 27 ~g~p~~~~~~l~~qfl~~g~~~G--e~~~~~~~~e~~~ 62 (260)
T 3bs4_A 27 EEDASSRGKDILFYILSRKLKSD--NLVGMFSISYPLQ 62 (260)
T ss_dssp ECSGGGCHHHHHHHHHHHHHHTT--CEEEEEECSSCHH
T ss_pred EeCCCccHHHHHHHHHHHHHHCC--CcEEEEEEeCCHH
Confidence 33445666699999999999999 9999999986543
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=77.22 E-value=1.7 Score=32.61 Aligned_cols=65 Identities=17% Similarity=0.030 Sum_probs=43.3
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+.. .......+.. +|.+++|...+ ..++..+..+++.+... +. .+.+|.|+.+.
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl 140 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRG--AMGFILMYDITNEESFNAVQDWATQIKTYSWDNA-QVILVGNKCDM 140 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTT--CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTC
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHcc--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECCCC
Confidence 45779999998532 1223334444 89999999854 56777777777777653 33 46689999764
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=77.20 E-value=1 Score=39.67 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.1
Q ss_pred CCCCCcHHHHHHHHHHHHHhcCCCC-eEEEEecCCCC
Q psy14655 5 SKGGVGKSTTTVNLATAMKICYPDK-EIGILDADVFG 40 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g~~~-~VllvD~D~~~ 40 (261)
+.-|+||||+..-|+..+...+ - +++.+|.|+..
T Consensus 145 GpnGsGKSTLlr~L~Gl~~p~~--G~~pI~vdg~~~~ 179 (460)
T 2npi_A 145 GGSQTGKTSLSRTLCSYALKFN--AYQPLYINLDPQQ 179 (460)
T ss_dssp ESTTSSHHHHHHHHHHTTHHHH--CCCCEEEECCTTS
T ss_pred CCCCCCHHHHHHHHhCcccccC--CceeEEEcCCccC
Confidence 4569999999999999887766 5 66778887654
No 431
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=77.19 E-value=0.9 Score=44.60 Aligned_cols=37 Identities=11% Similarity=0.034 Sum_probs=25.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcC--CCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICY--PDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g--~~~~VllvD~D~~ 39 (261)
+.+-||+||||+|..++....... -...|+.|++...
T Consensus 152 i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 152 IYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred EEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 467899999999998887643211 0246778887653
No 432
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=77.18 E-value=1.5 Score=33.07 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la 23 (261)
.-+.-|+||||+...++..+.
T Consensus 5 l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHHG
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 346779999999999998883
No 433
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=77.17 E-value=3.6 Score=31.52 Aligned_cols=66 Identities=20% Similarity=0.160 Sum_probs=43.4
Q ss_pred CCCCEEEEeCCCCC--ChhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC--CCCeEEEEEcCCCCC
Q psy14655 105 GPCDILFIDTPPGT--GDTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL--NIPVAGLVMNMNSVL 173 (261)
Q Consensus 105 ~~yd~IiiD~~~~~--~~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~giv~N~~~~~ 173 (261)
..+.+.|+|+|+.. .......+.. +|.+++|...+ ..+...+...+..+... +.+ +.+|.|+.+..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQ--AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTT--CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccc
Confidence 45789999999632 2223334444 89999999854 45666666666655543 445 55999998763
No 434
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=77.14 E-value=11 Score=27.72 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCCh--hHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD--THLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~--~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
.++.+.++|+|+.... .....+.. +|.+++|.+.+ ..++..+...+..+.. .+.+ +-+|.|+.+.
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 129 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFEN--TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDL 129 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTT--CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCC--CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCc
Confidence 4578899999964322 12233444 89999999854 4677776665554432 2444 6689999764
No 435
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.14 E-value=1.1 Score=37.45 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.9
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
+..+.-|+||||++..+|..+
T Consensus 55 ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 55 LLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp EEESSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 345778999999999999887
No 436
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=77.08 E-value=1.1 Score=34.46 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.1
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++++.-|+||||+...|+..+
T Consensus 23 vl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHhhC
Confidence 567888999999998887654
No 437
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=77.06 E-value=3.1 Score=31.61 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHH-HHHHHHHhC--CCCeEEEEEcCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQ-RGYTMFKKL--NIPVAGLVMNMNS 171 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~-~~~~~l~~~--~~~~~giv~N~~~ 171 (261)
..+.+.|+|+|+... ......+.. +|.+++|... +..+...+. .+++.+... +.+ +-+|.|+.+
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 145 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQ--TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLD 145 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechh
Confidence 456777999986432 222233344 8999999984 445666665 566666654 444 568999855
No 438
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=76.84 E-value=1.5 Score=37.92 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=25.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+.--|-.||||++.-++..|...| ++|.++
T Consensus 52 I~VTGTnGKtTT~~~l~~iL~~~G--~~~g~~ 81 (422)
T 1w78_A 52 FTVAGTNGKGTTCRTLESILMAAG--YKVGVY 81 (422)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEeCCcChHHHHHHHHHHHHHCC--CCEEEE
Confidence 344577899999999999999999 999765
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=76.76 E-value=1.2 Score=35.70 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=21.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+.-|+||||++..||..+ | . -++|.|.
T Consensus 52 ~l~G~~GsGKSTl~~~La~~l---g--~--~~~d~d~ 81 (250)
T 3nwj_A 52 YLVGMMGSGKTTVGKIMARSL---G--Y--TFFDCDT 81 (250)
T ss_dssp EEECSTTSCHHHHHHHHHHHH---T--C--EEEEHHH
T ss_pred EEECCCCCCHHHHHHHHHHhc---C--C--cEEeCcH
Confidence 345677999999999998876 4 3 3566653
No 440
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.68 E-value=1.2 Score=37.49 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~ 24 (261)
++.+..|+||||++..+|..+..
T Consensus 42 ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 46788899999999999988854
No 441
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=76.60 E-value=3.7 Score=29.85 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|...+ ..+...+...+..+... +. .+-+|.|+.+.
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl 131 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRD--STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV-IIMLVGNKTDL 131 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHT--CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS-EEEEEEECGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcC--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECCcc
Confidence 46799999996432 222333444 89999999854 45666666666555432 33 36689999664
No 442
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.50 E-value=1.9 Score=35.75 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=23.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~ 36 (261)
+..+.-|+||||++..+|..+... .....+.-+++
T Consensus 62 ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 62 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 345677999999999999998632 10145555544
No 443
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=76.36 E-value=1.6 Score=37.77 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=26.3
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+.+.-|+||||+...++..+.... .+|+.++-+
T Consensus 172 I~GpnGSGKTTlL~allg~l~~~~--g~I~~~ed~ 204 (418)
T 1p9r_A 172 VTGPTGSGKSTTLYAGLQELNSSE--RNILTVEDP 204 (418)
T ss_dssp EECSTTSCHHHHHHHHHHHHCCTT--SCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHhhcCCCC--CEEEEeccc
Confidence 556779999999999999887655 678877743
No 444
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.17 E-value=1 Score=37.89 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=22.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEe
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILD 35 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD 35 (261)
++.+.-|+|||++|..+|..+... .+...+.
T Consensus 74 Ll~GppGtGKT~la~~la~~l~~~---~~~~~~~ 104 (368)
T 3uk6_A 74 LIAGQPGTGKTAIAMGMAQALGPD---TPFTAIA 104 (368)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCSS---CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhccc---CCccccc
Confidence 345677999999999999998643 3444444
No 445
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=76.14 E-value=0.6 Score=39.35 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=24.0
Q ss_pred ccCCCCCcHHHHH-HHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 3 ASSKGGVGKSTTT-VNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 3 ~s~KGGvGKTT~a-~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+.+-=|+||||++ ..|+..|...| . +++.-.|-
T Consensus 17 iEG~~GaGKTT~~~~~L~~~l~~~g--~--vv~trEPg 50 (341)
T 1osn_A 17 LDGAYGIGKTTAAEEFLHHFAITPN--R--ILLIGEPL 50 (341)
T ss_dssp EEESSSSCTTHHHHHHHHTTTTSGG--G--EEEECCCH
T ss_pred EeCCCCCCHHHHHHHHHHHHHhhCC--c--EEEEeCCC
Confidence 4455699999999 99988887776 4 44444443
No 446
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.96 E-value=1.6 Score=38.13 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=24.8
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+.-|+|||++|..+|..+ .+ ..++.|++.
T Consensus 171 LL~GppGtGKT~lA~aia~~~--~~--~~~~~v~~~ 202 (444)
T 2zan_A 171 LLFGPPGTGKSYLAKAVATEA--NN--STFFSISSS 202 (444)
T ss_dssp EEECSTTSSHHHHHHHHHHHC--CS--SEEEEECCC
T ss_pred EEECCCCCCHHHHHHHHHHHc--CC--CCEEEEeHH
Confidence 345677999999999999876 35 777777764
No 447
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.84 E-value=4.6 Score=29.62 Aligned_cols=66 Identities=9% Similarity=0.014 Sum_probs=40.9
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.++.+.|+|+|+... ......+.. +|.+++|.+. +..++..+...+..+... .-..+-+|.|+.+.
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYAD--TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTT--EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 457889999996432 222333444 8899999985 455777777766655432 22346789999764
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=75.67 E-value=1.4 Score=34.97 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=16.5
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+.+--|+||||++..||..+
T Consensus 14 i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 14 VDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45667999999999998766
No 449
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=75.66 E-value=1.4 Score=36.74 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=23.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIG 32 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vl 32 (261)
++--|-.||||++.-++..|...| +++.
T Consensus 111 IaVTGTnGKTTTt~ll~~iL~~~g--~~~~ 138 (326)
T 3eag_A 111 LGVAGTHGKTTTASMLAWVLEYAG--LAPG 138 (326)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHTT--CCCE
T ss_pred EEEECCCCHHHHHHHHHHHHHHcC--CCce
Confidence 345588999999999999999999 8764
No 450
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=75.62 E-value=3.1 Score=33.53 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=24.1
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+...-|.|||.++..++..+...+ +.+||+|
T Consensus 133 l~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil 163 (282)
T 1rif_A 133 LNLPTSAGRSLIQALLARYYLENY-EGKILII 163 (282)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEE
Confidence 456679999999988888776665 2488888
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.56 E-value=0.96 Score=35.70 Aligned_cols=20 Identities=30% Similarity=0.213 Sum_probs=16.8
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+.+--|+||||++..|+..|
T Consensus 7 ~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 7 IEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEECTTSSHHHHHHHHHHHC
T ss_pred EEcCCCCCHHHHHHHHHHHc
Confidence 44567999999999998877
No 452
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.34 E-value=1.3 Score=36.69 Aligned_cols=30 Identities=17% Similarity=0.075 Sum_probs=23.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
++.+-.|+||||++..++..+ .++.+|+..
T Consensus 35 ~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~~~~ 64 (350)
T 2qen_A 35 LLLGIRRVGKSSLLRAFLNER-------PGILIDCRE 64 (350)
T ss_dssp EEECCTTSSHHHHHHHHHHHS-------SEEEEEHHH
T ss_pred EEECCCcCCHHHHHHHHHHHc-------CcEEEEeec
Confidence 567889999999999887542 278888864
No 453
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.16 E-value=4 Score=43.74 Aligned_cols=45 Identities=22% Similarity=0.094 Sum_probs=36.4
Q ss_pred cCCCCCcHHHHHHHHHHHHHhc-CCCCeEEEEecCCCCCCcccccCCC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKIC-YPDKEIGILDADVFGPSIPILMNLP 50 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~-g~~~~VllvD~D~~~~~~~~~~~~~ 50 (261)
=+.-|+||||+..-||.++.+. | .++....++|..-+...++|.-
T Consensus 929 vGptgsGKTt~~~~La~al~~l~~--~~~~~~~inpk~~t~~el~G~~ 974 (2695)
T 4akg_A 929 VGKAGCGKTATWKTVIDAMAIFDG--HANVVYVIDTKVLTKESLYGSM 974 (2695)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHHTC--CEEEEEEECTTTSCHHHHTTEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcC--CCceEEEeCCCCCCHHHhccee
Confidence 3567999999999999999875 5 7777778888877777787753
No 454
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=75.16 E-value=11 Score=28.24 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCCEEEEeCCCCCCh---hHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh----CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGD---THLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK----LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~---~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~----~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+++.... .....+.. +|.+++|... +..++..+...+..+.. .+.+ +-+|.|+.+.
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~--~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 142 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQT--GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDL 142 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHH--CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred EEEEEEEEecCCCccchhhhHHHhhcc--CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhc
Confidence 3567889999864322 12223444 8999999984 45667777776666554 2445 5589999764
No 455
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=74.85 E-value=2.1 Score=40.50 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=26.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh-cCCCCeEEEEec
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI-CYPDKEIGILDA 36 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~-~g~~~~VllvD~ 36 (261)
++.+--|+|||++.+.+...|.+ .+ .+||++=.
T Consensus 379 lI~GppGTGKT~~i~~~i~~l~~~~~--~~ILv~a~ 412 (802)
T 2xzl_A 379 LIQGPPGTGKTVTSATIVYHLSKIHK--DRILVCAP 412 (802)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEEES
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCC--CeEEEEcC
Confidence 34566799999999999988876 66 89998753
No 456
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.66 E-value=2.1 Score=36.44 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
+..+--|+|||++|..+|.. .+ .+++.+++..
T Consensus 152 LL~GppGtGKT~la~aia~~---~~--~~~~~v~~~~ 183 (389)
T 3vfd_A 152 LLFGPPGNGKTMLAKAVAAE---SN--ATFFNISAAS 183 (389)
T ss_dssp EEESSTTSCHHHHHHHHHHH---TT--CEEEEECSCC
T ss_pred EEECCCCCCHHHHHHHHHHh---hc--CcEEEeeHHH
Confidence 34567899999999988765 46 7888887743
No 457
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.65 E-value=1.2 Score=35.31 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.8
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+-+.-|+||||++..+|..+
T Consensus 54 l~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 54 LVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EECCTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 45678999999999998765
No 458
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=74.59 E-value=1.5 Score=33.44 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=17.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la 23 (261)
+.+.-|+||||+...|+..+.
T Consensus 9 lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 9 LSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EECCTTSSHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHhhCc
Confidence 456779999999999988763
No 459
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.51 E-value=0.87 Score=37.86 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=26.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++.+--|+||||+...|.... .| +|+.+|..|.-
T Consensus 8 ~i~G~~GaGKTTll~~l~~~~--~~--~~~aVi~~d~G 41 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNEQ--HG--YKIAVIENEFG 41 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHSC--CC--CCEEEECSSCC
T ss_pred EEEecCCCCHHHHHHHHHhhc--CC--CcEEEEEecCc
Confidence 355677999999998887653 56 99999987754
No 460
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=74.42 E-value=1.1 Score=33.83 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=17.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la 23 (261)
+.+.-|+||||+...|+..+.
T Consensus 6 l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EESSSSSSHHHHHHHHHHHCG
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 456779999999999988775
No 461
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=74.38 E-value=1.4 Score=33.58 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=20.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
.-+.-|+||||++..||. .| ..+ +|.|.
T Consensus 7 l~G~~GsGKST~~~~La~----lg--~~~--id~d~ 34 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD----LG--VPL--VDADV 34 (206)
T ss_dssp EECSTTSCHHHHHHHHHT----TT--CCE--EEHHH
T ss_pred EECCCCCCHHHHHHHHHH----CC--Ccc--cchHH
Confidence 345679999999988875 46 654 57764
No 462
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.29 E-value=1.4 Score=32.63 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=16.1
Q ss_pred CCCCCcHHHHHHHHHHHH
Q psy14655 5 SKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~l 22 (261)
+.-|+||||+...++..+
T Consensus 40 G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 40 GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSTTSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 456999999999999988
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=74.25 E-value=7.1 Score=28.97 Aligned_cols=65 Identities=14% Similarity=0.117 Sum_probs=41.6
Q ss_pred CCCCEEEEeCCCCCChh-HHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHh------CCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTGDT-HLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKK------LNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~~~-~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~------~~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+..... ....+.. +|.+++|... +..++..+...+..+.. .+.+ +.+|.|+.+.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~--~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNCERYLNW--AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEEECCC---CCCTHHHHTT--CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEEECCCCCcchhHHHHHhh--CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 45678899998643211 2334444 8999999885 45677777766665554 2455 5699999664
No 464
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=73.89 E-value=1.9 Score=37.59 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=25.9
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+.--|-.||||++.-++..|...| ++|.+.
T Consensus 55 I~VTGTnGKtTT~~~l~~iL~~~G--~~vg~~ 84 (442)
T 1o5z_A 55 IHIGGTNGKGSVANMVSNILVSQG--YRVGSY 84 (442)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHHT--CCEEEE
T ss_pred EEEECCcCHHHHHHHHHHHHHHCC--CCEEEE
Confidence 344577899999999999999999 999875
No 465
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=73.89 E-value=2.2 Score=35.86 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCC---------------hhHHHHhhhcCCCeEEEEeC-CCc-chHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14655 106 PCDILFIDTPPGTG---------------DTHLSLIQNLFIDTAIIITI-PDT-MSLQVAQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 106 ~yd~IiiD~~~~~~---------------~~~~~~~~~~~ad~viiv~~-~~~-~s~~~~~~~~~~l~~~~~~~~giv~N 168 (261)
.++++|+|||+-.. ......+.. ++.+++++. .+. ..-.....+++.+...+.+ +-+|+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~-~i~V~N 205 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDALKVAKEVDPQGQR-TIGVIT 205 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTT-EEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHHHHHHHHhCcCCCc-eEEEec
Confidence 57899999996321 011122222 455555443 322 2222233455555555666 558899
Q ss_pred CCCC
Q psy14655 169 MNSV 172 (261)
Q Consensus 169 ~~~~ 172 (261)
+.+.
T Consensus 206 K~Dl 209 (353)
T 2x2e_A 206 KLDL 209 (353)
T ss_dssp CGGG
T ss_pred cccc
Confidence 9775
No 466
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.87 E-value=1.8 Score=35.89 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=24.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
+..+.-|+|||+++..+|..+ + .+...+.+.+.
T Consensus 50 ll~G~pGtGKT~la~~la~~~---~--~~~~~i~~~~~ 82 (331)
T 2r44_A 50 LLEGVPGLAKTLSVNTLAKTM---D--LDFHRIQFTPD 82 (331)
T ss_dssp EEESCCCHHHHHHHHHHHHHT---T--CCEEEEECCTT
T ss_pred EEECCCCCcHHHHHHHHHHHh---C--CCeEEEecCCC
Confidence 345677999999999998866 4 66677776543
No 467
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=73.60 E-value=1.2 Score=32.04 Aligned_cols=16 Identities=50% Similarity=0.758 Sum_probs=13.0
Q ss_pred cCCCCCcHHHHHHHHH
Q psy14655 4 SSKGGVGKSTTTVNLA 19 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA 19 (261)
-+.+|+||||+...+.
T Consensus 9 ~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLI 24 (166)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 3569999999987775
No 468
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=73.49 E-value=1.5 Score=32.77 Aligned_cols=18 Identities=44% Similarity=0.676 Sum_probs=14.3
Q ss_pred ccCCCCCcHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLAT 20 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~ 20 (261)
+-+.+|+||||+...|..
T Consensus 26 vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 26 VVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHc
Confidence 345699999999988863
No 469
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=73.35 E-value=18 Score=28.99 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCCCCh--------hHHHHhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTGD--------THLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~--------~~~~~~~~~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
++.+.|+|+|+..+. .....+....+|.+++|++.+. ......+...+.+.+.+ +-++.|+++.
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p-~ilv~NK~Dl 119 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIP-VTIALNMIDV 119 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSC-EEEEEECHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCC-EEEEEEChhh
Confidence 568999999975432 1222232112899999988554 33344455556666777 4588999653
No 470
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=73.24 E-value=1.6 Score=33.10 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=15.8
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+.+.-|+||||++..|+..+
T Consensus 12 l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhhC
Confidence 34667999999999888654
No 471
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=73.08 E-value=8 Score=34.11 Aligned_cols=62 Identities=16% Similarity=0.077 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCC-Ch----------hHHHHhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGT-GD----------THLSLIQNLFIDTAIIITIPDTM-SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~-~~----------~~~~~~~~~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.++.++|+|||+.. .. .....+.. ||.+++|++.+.. +... ..+++.+. +.+ +-+|.|+.+.
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~--aD~vl~VvD~s~~~s~~~-~~il~~l~--~~p-iivV~NK~DL 362 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK--ADIVLFVLDASSPLDEED-RKILERIK--NKR-YLVVINKVDV 362 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH--CSEEEEEEETTSCCCHHH-HHHHHHHT--TSS-EEEEEEECSS
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc--ccEEEEEecCCCCCCHHH-HHHHHHhc--CCC-EEEEEECccc
Confidence 45679999999744 21 12344555 9999999985443 4433 23444442 444 6699999876
No 472
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.94 E-value=2.1 Score=37.93 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=24.7
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
+..+--|+|||++|..+|..+ + .+++.|+|.
T Consensus 242 LL~GppGtGKT~lAraia~~~---~--~~fv~vn~~ 272 (489)
T 3hu3_A 242 LLYGPPGTGKTLIARAVANET---G--AFFFLINGP 272 (489)
T ss_dssp EEECSTTSSHHHHHHHHHHHC---S--SEEEEEEHH
T ss_pred EEECcCCCCHHHHHHHHHHHh---C--CCEEEEEch
Confidence 345678999999999887664 6 888998874
No 473
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.86 E-value=3.1 Score=36.16 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=24.6
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADV 38 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~ 38 (261)
..+--|+|||++|..+|..+ | .+.+.|++.-
T Consensus 211 L~GPPGtGKT~lakAiA~~~---~--~~~~~v~~~~ 241 (428)
T 4b4t_K 211 LYGPPGTGKTMLVKAVANST---K--AAFIRVNGSE 241 (428)
T ss_dssp EESCTTTTHHHHHHHHHHHH---T--CEEEEEEGGG
T ss_pred EECCCCCCHHHHHHHHHHHh---C--CCeEEEecch
Confidence 45667999999999999876 5 7788887653
No 474
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=72.85 E-value=1.6 Score=35.59 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=24.9
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
++.+..|+||||++..+|..+...+.+..++.+++.
T Consensus 42 ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred EEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 456778999999999999998644301345555554
No 475
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=72.85 E-value=2.2 Score=37.16 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.0
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
+.--|-.||||++.-++..|...| +||.+.
T Consensus 55 I~VtGTNGKgSt~~~l~~iL~~~G--~~vg~~ 84 (437)
T 3nrs_A 55 FTVAGTNGKGTTCCTLEAILLAAG--LRVGVY 84 (437)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEECCcChHHHHHHHHHHHHHCC--CcEEEE
Confidence 344588899999999999999999 999774
No 476
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=72.73 E-value=3.1 Score=31.92 Aligned_cols=33 Identities=15% Similarity=0.030 Sum_probs=27.4
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
.-+.=|+||||-....+......+ ++|+++-..
T Consensus 25 iyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 25 ILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred EECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 345668999999999888888888 999999733
No 477
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=72.58 E-value=1.4 Score=34.49 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=17.4
Q ss_pred cccCCCCCcHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~l 22 (261)
++.+.-|+||||+...|+..+
T Consensus 20 ~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEECCTTSCHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhccC
Confidence 456788999999998887765
No 478
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=72.27 E-value=15 Score=31.05 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=23.2
Q ss_pred CCCEEEEeCCCCCCh---------hHHHHhhhcCCCeEEEEeCCCc
Q psy14655 106 PCDILFIDTPPGTGD---------THLSLIQNLFIDTAIIITIPDT 142 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~---------~~~~~~~~~~ad~viiv~~~~~ 142 (261)
...+.|+|+|+.... .....+.. +|.++.|+....
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~--ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRE--TDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHT--CSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHh--cCeEEEEEecCC
Confidence 367999999964431 12233444 999999998653
No 479
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=72.19 E-value=2.5 Score=36.93 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=23.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecC
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D 37 (261)
.+--|+||||++..||..+ + ...+.+|+.
T Consensus 56 ~GppGtGKT~lar~lA~~l---~--~~~~~v~~~ 84 (444)
T 1g41_A 56 IGPTGVGKTEIARRLAKLA---N--APFIKVEAT 84 (444)
T ss_dssp ECCTTSSHHHHHHHHHHHT---T--CCEEEEEGG
T ss_pred EcCCCCCHHHHHHHHHHHc---C--CCceeecch
Confidence 4556999999999998776 5 777788873
No 480
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=72.16 E-value=5 Score=29.65 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHH-HHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVA-QRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~-~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.++++.+. +..++..+ ..+++.+... +. .+-+|.|+.+.
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl 123 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPD--SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 123 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTC-EEEEEEECGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCC--CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEcchh
Confidence 456789999986422 122223334 8999999984 44566666 4555555542 33 46689999664
No 481
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=72.13 E-value=2.2 Score=37.75 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=25.8
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
++--|-.||||++.-++..|...| ++|.++
T Consensus 111 I~VTGTnGKTTT~~ml~~iL~~~g--~~~~~~ 140 (498)
T 1e8c_A 111 VGVTGTNGKTTTTQLLAQWSQLLG--EISAVM 140 (498)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEEeCCcChHHHHHHHHHHHHhCC--CCEEEE
Confidence 344588899999999999999999 888765
No 482
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=71.92 E-value=9.9 Score=29.24 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=38.8
Q ss_pred CCCCEEEEeCCCCCC-----h-----h-HHHHhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHhC--CCCeEEEEEc
Q psy14655 105 GPCDILFIDTPPGTG-----D-----T-HLSLIQNLFIDTAIIITIPDTM---SLQVAQRGYTMFKKL--NIPVAGLVMN 168 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~-----~-----~-~~~~~~~~~ad~viiv~~~~~~---s~~~~~~~~~~l~~~--~~~~~giv~N 168 (261)
..+.+.|+|+|+... . . ....... +|.+++|.+.+.. .......++..+... +.+ +.+|.|
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI--NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS--SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc--ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 456899999997532 1 1 1112222 7888888875432 223334556666654 455 568999
Q ss_pred CCCC
Q psy14655 169 MNSV 172 (261)
Q Consensus 169 ~~~~ 172 (261)
+.+.
T Consensus 151 K~Dl 154 (228)
T 2qu8_A 151 KIDK 154 (228)
T ss_dssp CGGG
T ss_pred Cccc
Confidence 9764
No 483
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=71.85 E-value=5.9 Score=33.25 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCCh---------------hHHHHhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHhCCCCeEEEEEc
Q psy14655 106 PCDILFIDTPPGTGD---------------THLSLIQNLFIDTAIIITIPDTM--SLQVAQRGYTMFKKLNIPVAGLVMN 168 (261)
Q Consensus 106 ~yd~IiiD~~~~~~~---------------~~~~~~~~~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~giv~N 168 (261)
..++.|+|+|+-... .....+.. +|.+++++.+... .......+++.+...+.+ +-+|+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~--~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~-~i~V~n 211 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK--PNCIILAISPANQDLATSDAIKISREVDPSGDR-TFGVLT 211 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS--SSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTT-EEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc--CCeEEEEeecccCCcCCHHHHHHHHHhcccCCC-EEEEEe
Confidence 568999999964321 12233444 8888888765322 223334444555444555 557899
Q ss_pred CCCCC
Q psy14655 169 MNSVL 173 (261)
Q Consensus 169 ~~~~~ 173 (261)
+.+..
T Consensus 212 K~Dl~ 216 (360)
T 3t34_A 212 KIDLM 216 (360)
T ss_dssp CGGGC
T ss_pred CCccC
Confidence 97753
No 484
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=71.48 E-value=5.3 Score=30.58 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=42.5
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHH-HHHHHHHHHhC--CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQV-AQRGYTMFKKL--NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~-~~~~~~~l~~~--~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+++... ......+.. +|.+++|.+. +..++.. ...++..+... +. .+.+|.|+.+.
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl 143 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSD--SDAVLLCFDISRPETVDSALKKWRTEILDYCPST-RVLLIGCKTDL 143 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTT--CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTS-EEEEEEECGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCC--CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCC-CEEEEEEChhh
Confidence 457899999986432 222233444 8999999984 4566666 46666766654 33 46688999664
No 485
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=71.25 E-value=2.5 Score=36.93 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=23.7
Q ss_pred cCCCCCcHHHHHHHHHHHHHhcCCCCeEEE
Q psy14655 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGI 33 (261)
Q Consensus 4 s~KGGvGKTT~a~~lA~~la~~g~~~~Vll 33 (261)
+--|-.||||++.-++..|...| +++.+
T Consensus 116 aVTGTnGKTTTt~ml~~iL~~~g--~~~~~ 143 (451)
T 3lk7_A 116 GITGSNGKTTTTTMIAEVLNAGG--QRGLL 143 (451)
T ss_dssp EEECSSCHHHHHHHHHHHHHHTT--CCEEE
T ss_pred EEECCCCHHHHHHHHHHHHHhcC--CCEEE
Confidence 44577899999999999999999 87754
No 486
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=71.22 E-value=3.3 Score=37.29 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCCCCcHHHHHHHHHHHHHhcC-------CCCeEEEE
Q psy14655 5 SKGGVGKSTTTVNLATAMKICY-------PDKEIGIL 34 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA~~la~~g-------~~~~Vllv 34 (261)
..-|.|||.++..++..+.+.+ .+.+||+|
T Consensus 205 ~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil 241 (590)
T 3h1t_A 205 MATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFL 241 (590)
T ss_dssp ECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEE
T ss_pred ecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEE
Confidence 4459999999999998887643 34777766
No 487
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=71.21 E-value=1.7 Score=34.73 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=15.8
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+.+--|+||||++..||..|
T Consensus 32 I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EECCTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 34567999999999988554
No 488
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.87 E-value=1.6 Score=37.61 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=23.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEEecCCC
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVF 39 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~~g~~~~VllvD~D~~ 39 (261)
++++--|+||||++..||..+ + . -+|.+|..
T Consensus 6 ~i~GptgsGKttla~~La~~~---~--~--~iis~Ds~ 36 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQLAQKF---N--G--EVINSDSM 36 (409)
T ss_dssp EEEECSSSSHHHHHHHHHHHH---T--E--EEEECCTT
T ss_pred EEECcchhhHHHHHHHHHHHC---C--C--eEeecCcc
Confidence 456778999999999998776 2 2 36887753
No 489
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=70.85 E-value=16 Score=31.96 Aligned_cols=65 Identities=8% Similarity=-0.046 Sum_probs=43.1
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHhC----CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVAQRGYTMFKKL----NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~----~~~~~giv~N~~~~ 172 (261)
.++.+.|+|||+... ......+.. +|.+|+|++. +..++..+...+..+.+. +.+ +-+|.|+.+.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~--ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 435 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTG--TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDL 435 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTT--CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhcc--CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCC
Confidence 467899999997432 222334444 8999999984 456777777666655432 344 6689999774
No 490
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.77 E-value=1.6 Score=36.35 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=18.6
Q ss_pred cccCCCCCcHHHHHHHHHHHHHh
Q psy14655 2 IASSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la~ 24 (261)
++.+.-|+||||++..+|..+-.
T Consensus 40 ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 40 LLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp EEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHcC
Confidence 34577899999999999997643
No 491
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.57 E-value=1.7 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.8
Q ss_pred ccCCCCCcHHHHHHHHHHHH
Q psy14655 3 ASSKGGVGKSTTTVNLATAM 22 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~l 22 (261)
+-+.-|+||||++..+|..+
T Consensus 78 l~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 78 LVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EECCTTSSHHHHHHHHHHHT
T ss_pred EECCCcChHHHHHHHHHHHc
Confidence 45677999999999998765
No 492
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=70.41 E-value=3 Score=31.84 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHhC---CCCeEEEEEcCCCC
Q psy14655 106 PCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIPD-TMSLQVAQRGYTMFKKL---NIPVAGLVMNMNSV 172 (261)
Q Consensus 106 ~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~giv~N~~~~ 172 (261)
.+.+.|+|+|+... ......+.. +|.+++|.+.+ ..+...+..+++.+... .-..+.+|.|+.+.
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~--~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl 153 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRD--AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADL 153 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTT--CCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTC
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcC--CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcc
Confidence 57899999986322 122233444 89999999854 44555555544444332 12246689999764
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=70.39 E-value=5.6 Score=30.23 Aligned_cols=66 Identities=11% Similarity=-0.003 Sum_probs=40.8
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHH-HHHHHHHHhC-CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVA-QRGYTMFKKL-NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~-~~~~~~l~~~-~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|.+. +..++..+ ..++..+... .-..+-+|.|+.+.
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~--~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPD--SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccC--CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 456899999986422 122223344 8999999984 44566666 4555655543 22346689999664
No 494
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=70.19 E-value=6.4 Score=29.30 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=40.9
Q ss_pred CCCCEEEEeCCCCCC--hhHHHHhhhcCCCeEEEEeCC-CcchHHHH-HHHHHHHHhC-CCCeEEEEEcCCCC
Q psy14655 105 GPCDILFIDTPPGTG--DTHLSLIQNLFIDTAIIITIP-DTMSLQVA-QRGYTMFKKL-NIPVAGLVMNMNSV 172 (261)
Q Consensus 105 ~~yd~IiiD~~~~~~--~~~~~~~~~~~ad~viiv~~~-~~~s~~~~-~~~~~~l~~~-~~~~~giv~N~~~~ 172 (261)
..+.+.|+|+|+... ......+.. +|.+++|... +..+...+ ..++..+... .-..+-+|.|+.+.
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 139 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYAD--SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTT--CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccC--CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 456789999996432 222233444 8999999984 44566665 4455555543 22246689999764
No 495
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=70.09 E-value=2.2 Score=31.07 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHH
Q psy14655 5 SKGGVGKSTTTVNLA 19 (261)
Q Consensus 5 ~KGGvGKTT~a~~lA 19 (261)
+..|+||||+...|+
T Consensus 10 G~~gvGKStL~~~l~ 24 (165)
T 2wji_A 10 GNPNVGKSTIFNALT 24 (165)
T ss_dssp CSTTSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHh
No 496
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=70.04 E-value=2.6 Score=37.70 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.7
Q ss_pred ccCCCCCcHHHHHHHHHHHHHhcCCCCeEEEE
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKICYPDKEIGIL 34 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~~g~~~~Vllv 34 (261)
++--|-.||||++.-++..|...| ++|.++
T Consensus 149 I~VTGTnGKTTT~~ml~~iL~~~G--~~~g~~ 178 (535)
T 2wtz_A 149 IGITGTSGKTTTTYLVEAGLRAAG--RVAGLI 178 (535)
T ss_dssp EEEESSSCHHHHHHHHHHHHHHTT--CCEEEE
T ss_pred EEeeCCCChHHHHHHHHHHHHHCC--CCEEEE
Confidence 344588899999999999999999 888764
No 497
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=69.81 E-value=5.2 Score=33.58 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=42.5
Q ss_pred CCEEEEeCCCC---------CChhHHHHhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHhC-----CCCeEEEEEc
Q psy14655 107 CDILFIDTPPG---------TGDTHLSLIQNLFIDTAIIITIPD----TMSLQVAQRGYTMFKKL-----NIPVAGLVMN 168 (261)
Q Consensus 107 yd~IiiD~~~~---------~~~~~~~~~~~~~ad~viiv~~~~----~~s~~~~~~~~~~l~~~-----~~~~~giv~N 168 (261)
..++|+|+|+. +......-+.. +|.+++|++.+ ..+......+.+.+..+ +.+ +.+|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~--~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIER--TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH--CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHh--ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 67999999852 11222233334 89999999865 46777777777777764 334 558999
Q ss_pred CCCC
Q psy14655 169 MNSV 172 (261)
Q Consensus 169 ~~~~ 172 (261)
+++.
T Consensus 283 K~Dl 286 (342)
T 1lnz_A 283 KMDM 286 (342)
T ss_dssp CTTS
T ss_pred CccC
Confidence 9764
No 498
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.79 E-value=1.7 Score=40.67 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=18.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHH
Q psy14655 2 IASSKGGVGKSTTTVNLATAMK 23 (261)
Q Consensus 2 v~s~KGGvGKTT~a~~lA~~la 23 (261)
+..+--|+|||++|..+|..+.
T Consensus 205 LL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 205 VLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEESCTTTTTHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 3456789999999999999983
No 499
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=69.72 E-value=7.3 Score=31.86 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=44.3
Q ss_pred CEEEEeCCCCCChhHHHHhhhcCCCeEEEEeCCCc-c-hHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Q psy14655 108 DILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDT-M-SLQVAQRGYTMFKKLNIPVAGLVMNMNSV 172 (261)
Q Consensus 108 d~IiiD~~~~~~~~~~~~~~~~~ad~viiv~~~~~-~-s~~~~~~~~~~l~~~~~~~~giv~N~~~~ 172 (261)
.+.|.|+.+.........+.. +|.+++|.+.+. . +...+.+++..++..+.+ +-+|.|+++.
T Consensus 64 ~~~iwD~qer~~~l~~~~~~~--ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~p-iilv~NK~DL 127 (301)
T 1u0l_A 64 SGVIENVLHRKNLLTKPHVAN--VDQVILVVTVKMPETSTYIIDKFLVLAEKNELE-TVMVINKMDL 127 (301)
T ss_dssp SEEEEEECCCSCEETTTTEES--CCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCE-EEEEECCGGG
T ss_pred eEEEEEEccccceeecccccc--CCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEeHHHc
Confidence 678888866555555555555 999999998653 2 566777777777766665 5589999775
No 500
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=69.70 E-value=2.2 Score=36.08 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=18.5
Q ss_pred ccCCCCCcHHHHHHHHHHHHHh
Q psy14655 3 ASSKGGVGKSTTTVNLATAMKI 24 (261)
Q Consensus 3 ~s~KGGvGKTT~a~~lA~~la~ 24 (261)
+.+-.|+||||++..||..+..
T Consensus 29 l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 29 LVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EECCTTSSHHHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHhCC
Confidence 4567899999999999988864
Done!