RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14655
(261 letters)
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Length = 262
Score = 227 bits (581), Expect = 8e-75
Identities = 67/182 (36%), Positives = 102/182 (56%), Gaps = 5/182 (2%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNL 60
+ S KGGVGKST T LA K++GILDAD GPSIPIL L + +
Sbjct: 22 AVMSGKGGVGKSTVTALLAVHYA--RQGKKVGILDADFLGPSIPILFGLRNARIAVSAEG 79
Query: 61 MIPLV--NYGVKCLSMGNLIT-EKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPG 117
+ P++ YG+K +SM L+ E + IWRG ++ + + +V WG D L ID PPG
Sbjct: 80 LEPVLTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPG 139
Query: 118 TGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSC 177
TGD L+++Q+ ++++ P ++ + ++ M ++ N V GLV NM+ +CP+C
Sbjct: 140 TGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYFVCPNC 199
Query: 178 NH 179
H
Sbjct: 200 GH 201
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 75.6 bits (186), Expect = 2e-16
Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 32/195 (16%)
Query: 2 IASS-KGGVGKSTTTVNLATAMKICYPDKEIGILDAD-------VFGPSIPILMNLPDTP 53
+A + KGGVGK+T L M +I +D D G SI +
Sbjct: 3 LAVAGKGGVGKTTVAAGLIKIM--ASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPL- 59
Query: 54 LLNKDNLMIPLVNYGVKCL-SMGNLITEKSAAIWRG---LMVM---------------QA 94
+ KD + + G+ L + +K L+ M
Sbjct: 60 IEMKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSF 119
Query: 95 LNKLTVQVQWGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTM 154
L + + + + +D G HL+ +D I + P+ S++ +
Sbjct: 120 LGSVVSALFLDKKEAVVMDMGAGIE--HLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKL 177
Query: 155 FKKLNIPVAGLVMNM 169
L I V+N
Sbjct: 178 AGDLGIKKVRYVINK 192
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 68.0 bits (167), Expect = 1e-13
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 21/177 (11%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP-----LLN 56
+AS KGG GK+T T NL A+ ++ I+DAD+ ++ +++ + P +L
Sbjct: 7 VASGKGGTGKTTITANLGVALAQL--GHDVTIVDADITMANLELILGMEGLPVTLQNVLA 64
Query: 57 KD----NLMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFI 112
+ + GVK + G + A L L ++ DIL +
Sbjct: 65 GEARIDEAIYV-GPGGVKVVPAGVSLEGLRKANPEKL--EDVLTQIM-----ESTDILLL 116
Query: 113 DTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169
D P G + + I +++ P+ S+ + + ++L V G+V+N
Sbjct: 117 DAPAGLERSAVIAI--AAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNR 171
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 66.5 bits (162), Expect = 7e-13
Identities = 35/191 (18%), Positives = 57/191 (29%), Gaps = 32/191 (16%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLL------ 55
S GGVG ST A A K++ L+ + G + + +
Sbjct: 148 FTSPCGGVGTSTVAAACAIAHANM--GKKVFYLNIEQCG-TTDVFFQAEGNATMSDVIYS 204
Query: 56 ---NKDNLMIPL------VNYGVKCLSMGNLITEK---SAAIWRGLMVMQALNKLTVQVQ 103
K NL++ L GV S + + S A L + +
Sbjct: 205 LKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEISYADIDTL-----IGNIQ---G 256
Query: 104 WGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKL-NIPV 162
D + +D P L L+ I++ +S R Y L
Sbjct: 257 MDNYDEIIVDLPFSLEIEKLKLLSKA--WRIIVVNDGSQLSNYKFMRAYESVVLLEQNDD 314
Query: 163 AGLVMNMNSVL 173
++ NMN +
Sbjct: 315 INIIRNMNMIY 325
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 64.4 bits (157), Expect = 1e-12
Identities = 44/240 (18%), Positives = 77/240 (32%), Gaps = 72/240 (30%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM 61
+AS KGGVGK+TT V+L+ + + E ++D D P
Sbjct: 5 VASFKGGVGKTTTAVHLSAYLAL---QGETLLIDGD---P-------------------- 38
Query: 62 IPLVNYGVKCLSMGNLITEKSAAIW--RGLMVMQALNKLTVQVQWGPCDILFIDTPPGTG 119
+SA W RG + + +++ + IDT
Sbjct: 39 ------------------NRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80
Query: 120 DTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNH 179
D L + + D +I + PD ++L +KL +++ + P
Sbjct: 81 DEDLEALADGC-DLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTI----IPP--- 132
Query: 180 MFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVH 239
+ EA+ L + +PL I R A+ + +G V
Sbjct: 133 -----YPSKDGDEARQLLTTAG------------LPLFKRGI-KRYSAFQKASLNGVVVS 174
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA
segregation, unknown function; HET: ADP; 1.80A
{Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Length = 206
Score = 58.5 bits (142), Expect = 1e-10
Identities = 34/251 (13%), Positives = 60/251 (23%), Gaps = 84/251 (33%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD---------VFGPSIPILMNLPD 51
+ KGG GK+T +N+ATA+ I ++D D G + +
Sbjct: 5 SFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAAS 62
Query: 52 TPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILF 111
+ + L +Y D
Sbjct: 63 EKDV--YGIRKDLADY----------------------------------------DFAI 80
Query: 112 IDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIP---VAGLVMN 168
+D + + D II P + A T+ + A ++
Sbjct: 81 VDGAGSLSVITSAAVMV--SDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLIT 138
Query: 169 MNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAY 228
M K +K G+ + I + Y
Sbjct: 139 R----KIEMATMLN---------VLKESIKD-----TGVKAFRTAIT--------QRQVY 172
Query: 229 GNSHGHGNTVH 239
S G++V
Sbjct: 173 VKSILDGDSVF 183
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 58.8 bits (143), Expect = 1e-10
Identities = 32/182 (17%), Positives = 64/182 (35%), Gaps = 23/182 (12%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP------LL 55
S+KGG G S N A A+ PD + +D + + + ++
Sbjct: 9 FVSAKGGDGGSCIAANFAFAL-SQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISN 67
Query: 56 NKDNLMIPLVN-YGVKCLSMGNLIT-----EKSAAIWRGLMVMQALNKLTVQVQWGPCDI 109
D L L++ +LI EK I + ++ D
Sbjct: 68 ASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVNIEPERVS-DLIHIAASF-----YDY 121
Query: 110 LFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVA--GLVM 167
+ +D + +++ +D I+T P SL+ A + + K+ P++ +++
Sbjct: 122 IIVDFGASIDHVGVWVLE--HLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIIL 179
Query: 168 NM 169
N
Sbjct: 180 NR 181
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell
division inhibitor, MINC, MINE, cell hydrolase; HET:
ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Length = 260
Score = 57.6 bits (140), Expect = 4e-10
Identities = 33/189 (17%), Positives = 68/189 (35%), Gaps = 34/189 (17%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD--------VFGPSIPILMNLPDTP 53
+ S KGGVGK+T++ +AT + K+ ++D + G ++ + +
Sbjct: 7 VTSGKGGVGKTTSSAAIATGL--AQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVN-- 62
Query: 54 LLNK----DNLMIPLVNYGVKCLSMGNLITEKSAAIWRGLM-VMQALNKLTVQVQWGPCD 108
++ + +I + + +K A G+ V+ L + +
Sbjct: 63 VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVAKVLDDLKAM-------DFE 115
Query: 109 ILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQ--------VAQRGYTMFKKLNI 160
+ D+P G L + F D AII T P+ S++ +A +
Sbjct: 116 FIVCDSPAGIETGALMAL--YFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEP 173
Query: 161 PVAGLVMNM 169
L++
Sbjct: 174 IKEHLLLTR 182
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered,
protein-ADP complex, cell cycle, hydrolase; HET: ADP;
2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A*
1ion_A*
Length = 237
Score = 51.7 bits (125), Expect = 3e-08
Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 44/189 (23%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM 61
I S KGG GK+T T NL+ A+ +++ +D D + + NL + +L D+
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDGD-----LT-MANL--SLVLGVDDPD 56
Query: 62 IPLVNY---------GVKCLSMGNL------ITEKSAAIWRGLMVMQALNKLTVQVQWGP 106
+ L + + N+ + + + + + L +
Sbjct: 57 VTLHDVLAGEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDK----- 111
Query: 107 CDILFIDTPPGTGDTHLSLIQNLFI------DTAIIITIPDTMSLQVAQRGYTMFKKLNI 160
D + ID P G +Q + + A+++T P+ L + + KK +
Sbjct: 112 FDFILIDCPAG--------LQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGL 163
Query: 161 PVAGLVMNM 169
+ G V+N
Sbjct: 164 AILGFVLNR 172
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 52.2 bits (125), Expect = 5e-08
Identities = 35/228 (15%), Positives = 66/228 (28%), Gaps = 71/228 (31%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK T+++ ATA+++ K + ++ D VF +I N + +
Sbjct: 16 KGGVGK--TSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIG---NTI-QAIASVP 69
Query: 59 NL-----------------MIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQ-ALNKLTV 100
L ++ + + + ++ + S A + LT
Sbjct: 70 GLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTD 129
Query: 101 QVQWGPCDILFIDTPPGTGDT-----------------------------------HLSL 125
D + DT P TG T +
Sbjct: 130 ASLLTRFDHIIFDTAP-TGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAY 188
Query: 126 IQNLFID----TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169
D +++ +LQ R + + + LV+N
Sbjct: 189 AVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVING 236
Score = 49.2 bits (117), Expect = 6e-07
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 27/102 (26%)
Query: 94 ALNKLTVQVQWGPCDILFIDTPPGTGDT----------------------HLSLIQNLFI 131
+ ++ + +DT P TG T H + L
Sbjct: 428 VFQAFSRVIREAGKRFVVMDTAP-TGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQ 486
Query: 132 D----TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169
D +++T+P+T + A ++ I G ++N
Sbjct: 487 DPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINN 528
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 51.4 bits (123), Expect = 8e-08
Identities = 42/296 (14%), Positives = 78/296 (26%), Gaps = 95/296 (32%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK+TT+ ++A + + P+++ ++ D +D F +
Sbjct: 26 KGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAFCQKFG---KDA-RKVEGLP 81
Query: 59 NL--------------MIPLVNYGVKCLSMGNLITEKSAAIWRGL---MVMQALNKL--- 98
NL Y + G+ + + K
Sbjct: 82 NLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMSDMTGSIPGIDEALSFMEVLKHIKN 141
Query: 99 ------TVQVQWGPCDILFIDTPPGTGDT------------------------------- 121
+ DT P TG T
Sbjct: 142 QKVLEGEDNSNAISYKTIIFDTAP-TGHTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMM 200
Query: 122 -----------------HLSLIQNLFID----TAIIITIPDTMSLQVAQRGYTMFKKLNI 160
++S + F + T I + I + +SL +R N+
Sbjct: 201 GGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETERMIQELMSYNM 260
Query: 161 PVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPL 216
V +V+N +L + + + + K L H+ +PL
Sbjct: 261 DVNSIVVNQ--LLFAEGDDHSCKRCESRWKMQKKY-LDQMGELYEDYHL--VKMPL 311
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 49.1 bits (117), Expect = 5e-07
Identities = 38/253 (15%), Positives = 74/253 (29%), Gaps = 94/253 (37%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK+T++ ++A M + P+K+ ++ D +D FG + +
Sbjct: 26 KGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFG---KDA-RKVTGMN 81
Query: 59 NL-------------------------MIPLVNYGVKCLSMGNLITEKSAAI--WRGLMV 91
NL + L G + + + +I +
Sbjct: 82 NLSCMEIDPSAALKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALS 141
Query: 92 MQALNKLTVQVQW---GPCDILFIDTPPGTGDT--------------------------- 121
+ K + + D + DT P TG T
Sbjct: 142 FMEVMKHIKRQEQGEGETFDTVIFDTAP-TGHTLRFLQLPNTLSKLLEKFGEITNKLGPM 200
Query: 122 ---------------------HLSLIQNLFID----TAIIITIPDTMSLQVAQRGYTMFK 156
++ I+ F D T + + I + +SL +R
Sbjct: 201 LNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELI 260
Query: 157 KLNIPVAGLVMNM 169
++ V +++N
Sbjct: 261 SYDMDVNSIIVNQ 273
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A
{Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Length = 286
Score = 48.2 bits (115), Expect = 8e-07
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD 37
+ + KGG GKST V+L TA+ Y ++ ++D D
Sbjct: 9 VGNEKGGAGKSTIAVHLVTAL--LYGGAKVAVIDLD 42
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase;
chimerical protein, P-loop protein, capsule
biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus
aureus} PDB: 2ved_A*
Length = 271
Score = 47.6 bits (114), Expect = 1e-06
Identities = 38/192 (19%), Positives = 64/192 (33%), Gaps = 47/192 (24%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP-----LL 55
+I S G GKST NLA A + I+D D+ P+ + NLP+ LL
Sbjct: 86 VITSEAPGAGKSTIAANLAVAY--AQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLL 143
Query: 56 NKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRG--------LMVMQALNKLTVQVQWGPC 107
N +++ ++ L ++T G L+ +A L +
Sbjct: 144 NWSTYQDSIISTEIEDLD---VLT-------SGPIPPNPSELITSRAFANLYDTLL-MNY 192
Query: 108 DILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT----------MFKK 157
+ + IDTPP N D + + V + +
Sbjct: 193 NFVIIDTPP----------VNTVTDAQLFSKFTGN-VVYVVNSENNNKDEVKKGKELIEA 241
Query: 158 LNIPVAGLVMNM 169
+ G+V+N
Sbjct: 242 TGAKLLGVVLNR 253
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein;
2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Length = 403
Score = 47.8 bits (114), Expect = 1e-06
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIG----ILDAD 37
+ + KGGV K+ +TV LA A+++ ++D D
Sbjct: 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLD 155
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA
bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB:
3ez6_A* 3ez7_A
Length = 398
Score = 46.7 bits (111), Expect = 3e-06
Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 52/214 (24%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIG----ILDAD-------VFGPSIPILMNLP 50
I++ KGGV K+ +TV+LA AM+ ++D D I +
Sbjct: 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSATMFLSHKHSIGIVNA 172
Query: 51 DTPLLNKDNLMIPL-VNYGVKCLSMGNL---------------ITEKSAAIWRGLMVMQA 94
+ N+ + + + + E G +
Sbjct: 173 TSAQAMLQNVSREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAV 232
Query: 95 LNKLTVQVQWGPCDILFIDTPPGTGDTHLSLI-QN-LFIDTAIIITIP------------ 140
L + + D + +D+ P HL +N L + +P
Sbjct: 233 LKENVIDKLKSDYDFILVDSGP-----HLDAFLKNALASANILFTPLPPATVDFHSSLKY 287
Query: 141 -----DTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169
+ + L ++ G NI + N
Sbjct: 288 VARLPELVKL-ISDEGCECQLATNIGFMSKLSNK 320
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH,
niaid, borellia burgdorferi, plasmid partition protein,
iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 44.9 bits (107), Expect = 9e-06
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
IAS KGGVGKST+ + LAT +
Sbjct: 32 IASIKGGVGKSTSAIILATLL 52
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding
domain, walker A motif, B protein kinase,
oligomerization; HET: ADP; 3.20A {Escherichia coli}
Length = 286
Score = 44.6 bits (106), Expect = 1e-05
Identities = 35/192 (18%), Positives = 65/192 (33%), Gaps = 47/192 (24%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP-----LL 55
M+ +G + NLA + +K + ++D D+ L+ + L+
Sbjct: 96 MMTGVSPSIGMTFVCANLAAVI--SQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILI 153
Query: 56 NKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRG--------LMVMQALNKLTVQVQWGPC 107
+ ++ + LI RG L++ + +L
Sbjct: 154 GQGDITTAAKPTSIAKFD---LIP-------RGQVPPNPSELLMSERFAELVNWAS-KNY 202
Query: 108 DILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT----------MFKK 157
D++ IDTPP D AI+ T +L VA+ F++
Sbjct: 203 DLVLIDTPP----------ILAVTDAAIVGRHVGT-TLMVARYAVNTLKEVETSLSRFEQ 251
Query: 158 LNIPVAGLVMNM 169
IPV G+++N
Sbjct: 252 NGIPVKGVILNS 263
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 44.2 bits (105), Expect = 1e-05
Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 47/192 (24%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP-----LL 55
MI + GK+ + LA + D+++ +DAD+ L + + L
Sbjct: 108 MITGATPDSGKTFVSSTLAAVI--AQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLA 165
Query: 56 NKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRG--------LMVMQALNKLTVQVQWGPC 107
KD L + ++G +IT RG L++ + +L
Sbjct: 166 GKDELNKVIQHFGKGGFD---VIT-------RGQVPPNPSELLMRDRMRQLLEWAN-DHY 214
Query: 108 DILFIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYT----------MFKK 157
D++ +DTPP D A++ T SL VA+ G ++
Sbjct: 215 DLVIVDTPP----------MLAVSDAAVVGRSVGT-SLLVARFGLNTAKEVSLSMQRLEQ 263
Query: 158 LNIPVAGLVMNM 169
+ + G ++N
Sbjct: 264 AGVNIKGAILNG 275
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 44.1 bits (104), Expect = 2e-05
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 133 TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM---NSVLCPSCNHMFELYENNLH 189
+ ++ IP+ MS+ ++R +K +I G+++N C CN +L + L
Sbjct: 224 SFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLK 283
Query: 190 QFEAK 194
Q K
Sbjct: 284 QIREK 288
Score = 34.8 bits (80), Expect = 0.022
Identities = 31/140 (22%), Positives = 49/140 (35%), Gaps = 33/140 (23%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK TT++ ATA+ + K+ ++ D +D + TP +
Sbjct: 22 KGGVGK--TTISAATALWMARSGKKTLVISTDPAHSLSDSLE------REIGHTPTKITE 73
Query: 59 NL---MI-----------PLVNYGVKCLSMGNLITEKSAAIWRGLMVMQ---ALNKLTVQ 101
NL I L MG + + + + A ++
Sbjct: 74 NLYAVEIDPEVAMEEYQAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRY 133
Query: 102 VQWGPCDILFIDTPPGTGDT 121
+ DI+ DT P TG T
Sbjct: 134 MTTDEYDIVIFDTAP-TGHT 152
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome
segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A*
2bek_A*
Length = 257
Score = 43.7 bits (104), Expect = 2e-05
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
+A+ KGGVGK+TT +NLA +
Sbjct: 11 LANQKGGVGKTTTAINLAAYL 31
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 43.6 bits (103), Expect = 3e-05
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 133 TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM----NSVLCPSCNHMFELYENNL 188
T + + I + +SL +R I +V+N + CP C ++ + L
Sbjct: 223 TFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYL 282
Query: 189 HQFEAK 194
Q E
Sbjct: 283 AQIEEL 288
Score = 34.0 bits (78), Expect = 0.034
Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 28/136 (20%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK TT + + A+++ + ++ D +D FG + D
Sbjct: 27 KGGVGK--TTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTKFG---KDA-RKVPGFD 80
Query: 59 NL-------------MIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWG 105
NL M + + ++ + + G+ A ++ Q++
Sbjct: 81 NLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMMQDLAFT-IPGIDEALAFAEILKQIKSM 139
Query: 106 PCDILFIDTPPGTGDT 121
D + DT P TG T
Sbjct: 140 EFDCVIFDTAP-TGHT 154
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 43.0 bits (102), Expect = 5e-05
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
KGGVGKS + A
Sbjct: 41 NNYFKGGVGKSKLSTMFAYLT 61
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 43.0 bits (101), Expect = 5e-05
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 133 TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM---NSVLCPSCNHMFELYENNLH 189
++ IP+ MS+ ++R +K IP+ +++N V C C EL L
Sbjct: 239 AFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLE 298
Query: 190 QFEAK 194
+ K
Sbjct: 299 MIKEK 303
Score = 32.2 bits (73), Expect = 0.14
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 30/139 (21%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK TT++ AT + + ++ I+ D D+F + P T + D
Sbjct: 34 KGGVGK--TTMSAATGVYLAEKGLKVVIVSTDPAHSLRDIFEQEFG---HEP-TKVKGYD 87
Query: 59 NL---MI-----------PLVNYGVKCLSMGNLITEK--SAAIWRGLMVMQALNKLTVQV 102
NL I L + +G ++ ++ AA+ G A + +
Sbjct: 88 NLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYM 147
Query: 103 QWGPCDILFIDTPPGTGDT 121
D++ DT P TG T
Sbjct: 148 DSNEFDVVIFDTAP-TGHT 165
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 7e-05
Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 99/322 (30%)
Query: 7 GGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNL-----PDTPLLNKDNLM 61
G GK+ + A+ +C K +D +F +NL P+T L L+
Sbjct: 159 LGSGKTW----V--ALDVCLSYKVQCKMDFKIF------WLNLKNCNSPETVLEMLQKLL 206
Query: 62 IPLV-NYGVKCLSMGNLITEKSAAIWR------------GLMVM------QALNKLTVQV 102
+ N+ + N+ + L+V+ +A N +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS- 265
Query: 103 QWGPCDILF-------IDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMF 155
C IL D TH+SL ++ +T + SL
Sbjct: 266 ----CKILLTTRFKQVTDFLSAATTTHISL-----DHHSMTLTPDEVKSL---------L 307
Query: 156 -KKLNIPVAGL---VMNMN----SVLCPSCNHMFELYENNLHQFEAK---------NFLK 198
K L+ L V+ N S++ S ++N H K N L+
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 199 SYE-RKLY---GIHMWNFLIP---LCNL------------IIKIRNVAYGNSHGHGNTVH 239
E RK++ + + IP L + + K+ + +T+
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 240 HHHV-LNLIGEEDQKSGPYKKL 260
+ L L + + + ++ +
Sbjct: 428 IPSIYLELKVKLENEYALHRSI 449
Score = 26.7 bits (58), Expect = 9.0
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 239 HHHHVLNL-IGEEDQKSGPYKKL 260
HHHH ++ GE + YK +
Sbjct: 2 HHHHHMDFETGEHQYQ---YKDI 21
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 3.30A {Corynebacterium
diphtheriae}
Length = 361
Score = 41.3 bits (97), Expect = 1e-04
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
++KGGVGK+T + N+A
Sbjct: 6 FFNNKGGVGKTTLSTNVAHYF 26
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 39.5 bits (92), Expect = 5e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 133 TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNM 169
T + + IP+ +SL +R I +V+N
Sbjct: 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQ 260
Score = 35.7 bits (82), Expect = 0.009
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 27/136 (19%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKEIGIL--D-----ADVFGPSIPILMNLPDTPLLNKD 58
KGGVGK TT + + A+++ + + +L D +D F + D
Sbjct: 24 KGGVGK--TTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFG---KEA-RLVEGFD 77
Query: 59 NL-------------MIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWG 105
NL ++ G + + A G+ + ++ QV
Sbjct: 78 NLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSL 137
Query: 106 PCDILFIDTPPGTGDT 121
+ + DT P TG T
Sbjct: 138 SYETIVFDTAP-TGHT 152
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 39.5 bits (92), Expect = 7e-04
Identities = 4/41 (9%), Positives = 18/41 (43%)
Query: 133 TAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVL 173
A ++T D + + + + +++ + + G++ +
Sbjct: 216 AAFLVTTADPLEVVSVRYLWGSAQQIGLTIGGVIQVSSQTE 256
Score = 32.6 bits (74), Expect = 0.11
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 31/138 (22%)
Query: 6 KGGVGKSTTTVNLATAMKICYPDKE---IGILD---ADVFGPSIPILMNLPDTPLLNKDN 59
K GV + T + +A A + K G+ + + L P N
Sbjct: 10 KSGVAR--TKIAIAAAKLLASQGKRVLLAGLAEPVLPLLLE------QTLTPDPQQIAPN 61
Query: 60 LMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQ----------------ALNKLTVQVQ 103
L + V + + A R ++ + ALN +
Sbjct: 62 LEVVQFQSSVLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDA 121
Query: 104 WGPCDILFIDTPPGTGDT 121
G D + D T
Sbjct: 122 SGKYDTIVYDGTG-DAFT 138
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur,
metal-binding, molybdenum, oxidoreductase; HET: HCA CFN
CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii}
SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E*
1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A
1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A*
1rw4_A
Length = 289
Score = 37.3 bits (87), Expect = 0.003
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 6 KGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL A+
Sbjct: 10 KGGIGKSTTTQNLVAAL 26
>3end_A Light-independent protochlorophyllide reductase iron-sulfur
ATP-binding protein; BCHL, electron donor, DPOR, Fe
protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter
sphaeroides 2} PDB: 3fwy_A*
Length = 307
Score = 37.5 bits (87), Expect = 0.003
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 6 KGGVGKSTTTVNLATAM 22
KGG+GKSTT+ NL+ A
Sbjct: 49 KGGIGKSTTSSNLSAAF 65
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium
pasteurianum} SCOP: c.37.1.10
Length = 269
Score = 35.4 bits (82), Expect = 0.010
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 6 KGGVGKSTTTVNLATAM 22
KGG+GKSTTT NL + +
Sbjct: 9 KGGIGKSTTTQNLTSGL 25
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 33.5 bits (76), Expect = 0.043
Identities = 24/209 (11%), Positives = 59/209 (28%), Gaps = 26/209 (12%)
Query: 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNY 67
G GK+T T ++ + ++ ++ D +P ++ + + +M
Sbjct: 24 GSGKTTLTGEFGRYLED---NYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGP 80
Query: 68 GVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD-THLSLI 126
+ + + EK ++ ++ D + IDTP
Sbjct: 81 NGAIVESYDRLMEKFNEYLNKILRLE-----------KENDYVLIDTPGQMETFLFHEFG 129
Query: 127 QNLF--IDTAIIITIPDTMSLQVAQR-------GYTMFKKLNIPVAGLVMNMNSVLCPSC 177
L + +++ I D L+ + +L +N +L
Sbjct: 130 VRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTI-PALNKVDLLSEEE 188
Query: 178 NHMFELYENNLHQF-EAKNFLKSYERKLY 205
Y ++ S + +
Sbjct: 189 KERHRKYFEDIDYLTARLKLDPSMQGLMA 217
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.37
Identities = 42/222 (18%), Positives = 69/222 (31%), Gaps = 75/222 (33%)
Query: 41 PSIPILMNLPDT-PLLNKDNLMIPLVNYGVKC----LSMGNLITEKSAAIWRGLMVMQAL 95
P L+++P + PL+ +I L +Y V + G L + A ++ A+
Sbjct: 226 PDKDYLLSIPISCPLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 96 -----------NKLTVQVQWGPCDILFI------DTPPGTGDTHLSLIQNLFIDT-AIII 137
+ +LF + P + SL ++ D+
Sbjct: 282 AIAETDSWESFFVSVRKA----ITVLFFIGVRCYEAYP-----NTSLPPSILEDSLENNE 332
Query: 138 TIPDTMSLQVAQRGYT------MFKKLN--IPVA-----GLVMNMNS----VLC--PSCN 178
+P M L + T K N +P LV N V+ P
Sbjct: 333 GVPSPM-LSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISLV---NGAKNLVVSGPPQ-- 384
Query: 179 HMFELY--ENNLHQFEAKNFLKSY-----ERKLYGIHMWNFL 213
LY L + +A + L ERKL + FL
Sbjct: 385 ---SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFL 421
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.78
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 33/61 (54%)
Query: 80 EKSAAIWRGLMVMQALNKLTVQVQ-WGPCDILFIDTPPGTGDTHLSLIQNLFIDTAIIIT 138
EK QAL KL ++ + D+ P +L AI T
Sbjct: 18 EK-----------QALKKLQASLKLYAD------DSAP-------AL--------AIKAT 45
Query: 139 I 139
+
Sbjct: 46 M 46
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 27.6 bits (61), Expect = 3.0
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 13/110 (11%)
Query: 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKD-------NL 60
GVGKSTT LA + ++ D+ + P +L
Sbjct: 12 GVGKSTTCKRLAAQLDNSA------YIEGDIINHMVVGGYRPPWESDELLALTWKNITDL 65
Query: 61 MIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDIL 110
+ + + +++ A+ + + ++ + W + L
Sbjct: 66 TVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREEL 115
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 27.5 bits (60), Expect = 5.8
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 107 CDILFIDTPPGTGDTHLSLIQNLFIDTAIIITIP 140
++ +D PG G T I + +I +P
Sbjct: 161 AKVVLVDGVPGCGKTK--EILSRVNFEEDLILVP 192
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 26.8 bits (58), Expect = 8.9
Identities = 13/84 (15%), Positives = 28/84 (33%)
Query: 10 GKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNYGV 69
++ T V C+ I PSI +++ + + +N V
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNV 356
Query: 70 KCLSMGNLITEKSAAIWRGLMVMQ 93
CL + + + +I G ++
Sbjct: 357 VCLGVVDGGSNLRTSIVIGGHQLE 380
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,990,514
Number of extensions: 231623
Number of successful extensions: 696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 59
Length of query: 261
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 169
Effective length of database: 4,133,061
Effective search space: 698487309
Effective search space used: 698487309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)