RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14655
(261 letters)
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 106 bits (264), Expect = 5e-28
Identities = 28/239 (11%), Positives = 74/239 (30%), Gaps = 35/239 (14%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD-------VFGPSIPILMNLPDTP 53
++ KGGVGK+T +A + ++ + +D S+ L P
Sbjct: 23 IMLMGKGGVGKTTMAAAIAVRLADM--GFDVHLTTSDPAAHLSMTLNGSLNNLQVSRIDP 80
Query: 54 LLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFID 113
+ ++ K L + + + ++ + +D
Sbjct: 81 HEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMD 140
Query: 114 TPP-------------------------GTGDTHLSLIQNLFIDTAIIITIPDTMSLQVA 148
T P G T + L+Q+ +++T+P+T + A
Sbjct: 141 TAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEA 200
Query: 149 QRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELYENNLHQFEAKNFLKSYERKLYGI 207
++ I G ++N + + + + + + ++ + + ++ +
Sbjct: 201 ANLQADLERAGIHPWGWIINNSLSIADTRSPLLR-MRAQQELPQIESVKRQHASRVALV 258
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 73.1 bits (178), Expect = 6e-16
Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 20/207 (9%)
Query: 2 IA-SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMN----------LP 50
+A KGG+GKSTTT NL + + K I ++ D S +L+ L
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLR 61
Query: 51 DTPLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDIL 110
+ + + ++ G++C+ G RG++ + + D +
Sbjct: 62 EEGEDVELDSILKEGYGGIRCVESG-GPEPGVGCAGRGIITSINMLEQLGAY-TDDLDYV 119
Query: 111 FIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGY-----TMFKKLNIPVAGL 165
F D ++ I I M A K + + G+
Sbjct: 120 FYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGI 179
Query: 166 VMNMNSVLCPSCNHMFELYENNLHQFE 192
+ N V E
Sbjct: 180 ICNSRKVANEYELLDAFAKELGSQLIH 206
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 71.6 bits (174), Expect = 4e-15
Identities = 33/272 (12%), Positives = 71/272 (26%), Gaps = 67/272 (24%)
Query: 4 SSKGGVGKSTTTVNLATAMKICYPDKEIGILDAD-------VFGPSIPILMNLPDT---- 52
+ KGGVGK++ + A + K + ++ D VF +I + +
Sbjct: 14 TGKGGVGKTSISCATAIRLAEQ--GKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGL 71
Query: 53 ------PLLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKL----TVQV 102
P +V+ L + + + A ++ T
Sbjct: 72 SALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDAS 131
Query: 103 QWGPCDILFIDTPPGTG--------------------------------------DTHLS 124
D + DT P +
Sbjct: 132 LLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVE 191
Query: 125 LIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCNHMFELY 184
+ + +++ +LQ R + + + LV+N + P +
Sbjct: 192 ALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVING---VLPKTEAANDTL 248
Query: 185 ENNLHQFEAKNFLKSYERKLYGIHMWNFLIPL 216
+ + E + L + L G+ + L
Sbjct: 249 AAAIWEREQE-ALANLPADLAGLPT--DTLFL 277
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 70.3 bits (171), Expect = 8e-15
Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 13/206 (6%)
Query: 2 IA-SSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTP------- 53
A KGG+GKSTTT NL A+ K++ I+ D S ++++
Sbjct: 5 CAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAA 62
Query: 54 --LLNKDNLMIPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTV-QVQWGPCDIL 110
+D + ++ G + + G V+ A+N L D +
Sbjct: 63 EAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFV 122
Query: 111 FIDTPPGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMN 170
F D ++ I I M A + + +
Sbjct: 123 FYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGL 182
Query: 171 SVLCPSCNHMFELYENNLHQFEAKNF 196
+ + EL ++ +
Sbjct: 183 ICNSRNTDREDELIIALANKLGTQMI 208
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 237
Score = 63.2 bits (152), Expect = 1e-12
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Query: 2 IASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLM 61
I S KGG GK+T T NL+ A+ +++ +D D+ ++ +++ + D + D L
Sbjct: 7 IVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLA 64
Query: 62 --IPLVNYGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPP 116
+ + + + L ++ D + ID P
Sbjct: 65 GEANVEDAIYMTQFDNVYVLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFILIDCPA 121
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 232
Score = 57.5 bits (137), Expect = 1e-10
Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 4/185 (2%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNL 60
+AS KGG GK+T T NL A+ ++ I+DAD+ ++ +++ + P+ ++ L
Sbjct: 5 TVASGKGGTGKTTITANLGVALAQL--GHDVTIVDADITMANLELILGMEGLPVTLQNVL 62
Query: 61 MIPLVNYGVKCLSMG--NLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGT 118
+ G ++ + + L + Q+ +L
Sbjct: 63 AGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLE 122
Query: 119 GDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCPSCN 178
+++ + + I + + V + +
Sbjct: 123 RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTLGIEMAKNE 182
Query: 179 HMFEL 183
L
Sbjct: 183 IEAIL 187
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 57.0 bits (136), Expect = 2e-10
Identities = 24/193 (12%), Positives = 49/193 (25%), Gaps = 7/193 (3%)
Query: 1 MIASSKGGVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNL 60
+ + VGK+ + L A K G L + N
Sbjct: 5 FVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKPVASGSEKTPEGLRNSDALALQRNS 62
Query: 61 MIPLVN-----YGVKCLSMGNLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTP 115
+ L Y + ++I+ + L++ L L Q W +
Sbjct: 63 SLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFT 122
Query: 116 PGTGDTHLSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVAGLVMNMNSVLCP 175
P + + I++ + A + + + +AG V N +
Sbjct: 123 PLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGK 182
Query: 176 SCNHMFELYENNL 188
+
Sbjct: 183 RHAEYMTTLTRMI 195
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 1.2
Identities = 20/167 (11%), Positives = 40/167 (23%), Gaps = 17/167 (10%)
Query: 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNLPDTPLLNKDNLMIPLVNY 67
G GK+TT LA K + ++ AD + L +
Sbjct: 20 GSGKTTTAAKLALYYK--GKGRRPLLVAADTQ-RPAAREQLRLLGEKVGVPVLEVMDGES 76
Query: 68 GVKCLSMGNLITEK-------SAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGD 120
R + + +L + D + + TG
Sbjct: 77 PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 136
Query: 121 THLSLIQNLF----IDTAIIITIPDTMSLQVAQRGYTMFKKLNIPVA 163
LS+ + + ++ + A + P+
Sbjct: 137 EALSVARAFDEKVGVTGLVLTKLDGDARGGAA---LSARHVTGKPIY 180
>d1ds1a_ b.82.2.2 (A:) Clavaminate synthase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 323
Score = 27.4 bits (60), Expect = 1.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 90 MVMQALNKLTVQVQWGPCDILFID 113
+ +AL+++T V P D+L +D
Sbjct: 249 ALSKALDEVTEAVYLEPGDLLIVD 272
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human
(Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 26.3 bits (57), Expect = 4.1
Identities = 6/73 (8%), Positives = 13/73 (17%), Gaps = 2/73 (2%)
Query: 182 ELYENNLHQFEAKNFLKSYERKLYGIHMWNFLIPLCNLIIKIRNVAYGNSHGHGNTVHH- 240
L + + + N + HH
Sbjct: 286 SLGLLPVPPEFWNKSMLEKPTDGREVVCHASAWDFYNGKDFRIKQCTTVNLEDLVVAHHE 345
Query: 241 -HHVLNLIGEEDQ 252
H+ + +D
Sbjct: 346 MGHIQYFMQYKDL 358
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase
{Moorella thermoacetica [TaxId: 1525]}
Length = 549
Score = 26.3 bits (58), Expect = 4.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 2 IASSKGGVGKSTTTVNLATAM 22
I + G GK+TT+V L A+
Sbjct: 59 ITPTPAGEGKTTTSVGLTDAL 79
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 24.2 bits (52), Expect = 5.5
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 165 LVMNMNSVLCPSCNHMFELYENNLH 189
L+ + + C C+ F L
Sbjct: 12 LMRDPKFLWCAQCSFGFIYEREQLE 36
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 24.9 bits (53), Expect = 8.4
Identities = 14/153 (9%), Positives = 40/153 (26%), Gaps = 9/153 (5%)
Query: 8 GVGKSTTTVNLATAMKICYPDKEIGILDADVFGPSIPILMNL----PDTPLLNKDNLMIP 63
GVG +T++ ++ + ++ + +F + + +
Sbjct: 11 GVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQK 70
Query: 64 LVNYGVKCLSMG-NLITEKSAAIWRGLMVMQALNKLTVQVQWGPCDILFIDTPPGTGDTH 122
+ + ++ + + + + + L + I+ T D
Sbjct: 71 MAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTG----DEI 126
Query: 123 LSLIQNLFIDTAIIITIPDTMSLQVAQRGYTMF 155
L + + T Q R M
Sbjct: 127 LMRRMSDETRVRDLDTASTIEQHQFMNRCAAMS 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.426
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 979,437
Number of extensions: 43814
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 16
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.5 bits)