BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14657
(605 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 167/295 (56%), Gaps = 22/295 (7%)
Query: 320 LTHFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGV 379
+ ++ K KQ++A ++ ++ N + +EN DLE PP DF YI P G+
Sbjct: 13 IAEYIVKKAKQRIA-LQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGI 71
Query: 380 VVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDE 439
+ ++ C C +C + CC AY++ +++K+ GTPIYECN +C C
Sbjct: 72 SLVNEATFGCSCT-DCFFQK--CCPAEAGVLLAYNK-NQQIKIPPGTPIYECNSRCQCGP 127
Query: 440 TCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRT--- 496
C NR+VQKG L IF+T N RGWGV+T KIK +FV EYVGE++T E A +R
Sbjct: 128 DCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFY 187
Query: 497 ---NQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSR--INNLNPDLHH 551
TY F+LD+ D F +DAARYGNVSHF+NHSCDPNL+V I+NL+ L
Sbjct: 188 DNKGITYLFDLDYESDE----FTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPR 243
Query: 552 VALFAKRDINKNEELSFCYL-----DLTKAKFTSSKRKKLVRNECRCGSSNCLGY 601
+ALF+ R IN EEL+F Y D++ S KK VR C+CG+ C GY
Sbjct: 244 IALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGY 298
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 8/174 (4%)
Query: 57 LTHFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGV 116
+ ++ K KQ++A ++ ++ N + +EN DLE PP DF YI P G+
Sbjct: 13 IAEYIVKKAKQRIA-LQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGI 71
Query: 117 VVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDE 176
+ ++ C C +C + CC AY++ +++K+ GTPIYECN +C C
Sbjct: 72 SLVNEATFGCSCT-DCFFQK--CCPAEAGVLLAYNK-NQQIKIPPGTPIYECNSRCQCGP 127
Query: 177 TCLNRVVQKGNLVQDCHTTITSRDGSVV--LLRVADINLT-KFSSDTMTEYEVE 227
C NR+VQKG C ++ G V L+++ ++ ++ + +T E E
Sbjct: 128 DCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAE 181
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
pdb|1MVX|A Chain A, Structure Of The Set Domain Histone Lysine
Methyltransferase Clr4
Length = 299
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 150/276 (54%), Gaps = 25/276 (9%)
Query: 349 AARLTLENNFDLES-PPMDFTYIPSSVPRDGVVVTDDPV-IWCECR--GNCVSNRDACCS 404
+TL N D E P +DF +I GV+ D C C G C N + C
Sbjct: 27 GPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCE 86
Query: 405 DLNDAD----FAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTK 460
L+D D FAY + R++ + G IYECN C+C C NRVVQ+G TLPL IFKTK
Sbjct: 87 CLDDLDEPTHFAYDAQ-GRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTK 145
Query: 461 NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ------TYCFNLDFNQDSNSVA 514
+GWGVR+ AGTF+ Y+GE++T A +R TY F+LD D++
Sbjct: 146 -EKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASE-- 202
Query: 515 FVLDAARYGNVSHFINHSCDPNLEV-SRINNLN-PDLHHVALFAKRDINKNEELSFCYL- 571
+ +DA YG+VS F NHSC PN+ + S + N ++ +A FA +DI EEL+F Y
Sbjct: 203 YTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 262
Query: 572 --DLTKAKFTSSKRKKL--VRNECRCGSSNCLGYYY 603
D + + S++ ++ +R +C+CGS+NC G+ +
Sbjct: 263 AKDFSPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 37/260 (14%)
Query: 86 AARLTLENNFDLES-PPMDFTYIPSSVPRDGVVVTDDPV-IWCECR--GNCVSNRDACCS 141
+TL N D E P +DF +I GV+ D C C G C N + C
Sbjct: 27 GPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCE 86
Query: 142 DLNDAD----FAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGNLVQDCHTTIT 197
L+D D FAY + R++ + G IYECN C+C C NRVVQ+G +
Sbjct: 87 CLDDLDEPTHFAYDAQ-GRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTK 145
Query: 198 SRDGSVVLLRVADIN--LTKFSSDTMTEYEVE-----------SVLDSLELTSDMTVYLV 244
+ V LR A +T + + +T E + L L++ D + Y V
Sbjct: 146 EKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTV 205
Query: 245 KWKNY-----------DPEYNTWEPIENLG-NCAKKLAEFL--KAGPDQERT-DFEKMKS 289
+NY P + + N G LA F P +E T D+ K
Sbjct: 206 DAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD 265
Query: 290 FLSQHTEEEVESVLAKLRNK 309
F +++ ++ ++KLR +
Sbjct: 266 FSPVQSQKSQQNRISKLRRQ 285
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 20/201 (9%)
Query: 422 LEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCE 481
L+ PIYEC++ CAC + C NRVV++G T+PL IF+TK +RGWGV+ P IK G FV
Sbjct: 103 LQSQEPIYECHQGCACSKDCPNRVVERGRTVPLQIFRTK-DRGWGVKCPVNIKRGQFVDR 161
Query: 482 YVGEILTHENA--------LQRTNQTYCFNLDFNQDSNSVAFVL-------DAARYGNVS 526
Y+GEI+T E A + R Y F LD D +S+ +L D +
Sbjct: 162 YLGEIITSEEADRRRAESTIARRKDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPT 221
Query: 527 HFINHSCDPNLEV-SRI-NNLNPDLHHVALFAKRDINKNEELSFCYLD-LTKAKFTSSKR 583
FINHSCDPN+ + +R+ ++ + +H +ALFA +DI K EL+F Y++ LT + +
Sbjct: 222 RFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDP 281
Query: 584 KKLVR-NECRCGSSNCLGYYY 603
K+ +C CG++ C GY +
Sbjct: 282 SKISEMTKCLCGTAKCRGYLW 302
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 159 LEKGTPIYECNKKCACDETCLNRVVQKGNLV 189
L+ PIYEC++ CAC + C NRVV++G V
Sbjct: 103 LQSQEPIYECHQGCACSKDCPNRVVERGRTV 133
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 20/250 (8%)
Query: 356 NNFDLESPPMDFTYIPSSVPRDGVVVTDD--PVIWCECRGNCVSNRDACCSDLNDADFAY 413
N D E P D+ YI + + + + + C C +C S+ + C L+ + Y
Sbjct: 27 NGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDC-SSSNCLCGQLSIRCW-Y 84
Query: 414 SRRTKRLK-LEKGTP--IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTP 470
+ + L+ K P I+ECN+ C+C C NRVVQ GI + L +++T GWGVR
Sbjct: 85 DKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAK-MGWGVRAL 143
Query: 471 DKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFIN 530
I GTF+CEYVGE+++ A R + +Y F+LD N+D + +DA YGN+S FIN
Sbjct: 144 QTIPQGTFICEYVGELISDAEADVREDDSYLFDLD-NKDGE--VYCIDARYYGNISRFIN 200
Query: 531 HSCDPNLEVSRINNLNPDLH--HVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVR 588
H CDPN+ R+ L+ DL +A F+ RDI EEL F Y D +F K K
Sbjct: 201 HLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGD----RFWDIKSKYFT- 255
Query: 589 NECRCGSSNC 598
C+CGS C
Sbjct: 256 --CQCGSEKC 263
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 93 NNFDLESPPMDFTYIPSSVPRDGVVVTDD--PVIWCECRGNCVSNRDACCSDLNDADFAY 150
N D E P D+ YI + + + + + C C +C S+ + C L+ + Y
Sbjct: 27 NGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDC-SSSNCLCGQLSIRCW-Y 84
Query: 151 SRRTKRLK-LEKGTP--IYECNKKCACDETCLNRVVQKG 186
+ + L+ K P I+ECN+ C+C C NRVVQ G
Sbjct: 85 DKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSG 123
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 20/250 (8%)
Query: 356 NNFDLESPPMDFTYIPSSVPRDGVVVTDD--PVIWCECRGNCVSNRDACCSDLNDADFAY 413
N D E P D+ YI + + + + + C C +C S+ + C L+ + Y
Sbjct: 29 NGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDC-SSSNCLCGQLSIRCW-Y 86
Query: 414 SRRTKRLK-LEKGTP--IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTP 470
+ + L+ K P I+ECN+ C+C C NRVVQ GI + L +++T GWGVR
Sbjct: 87 DKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSGIKVRLQLYRTAK-MGWGVRAL 145
Query: 471 DKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFIN 530
I GTF+CEYVGE+++ A R + +Y F+LD N+D + +DA YGN+S FIN
Sbjct: 146 QTIPQGTFICEYVGELISDAEADVREDDSYLFDLD-NKDGE--VYCIDARYYGNISRFIN 202
Query: 531 HSCDPNLEVSRINNLNPDLH--HVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVR 588
H CDPN+ R+ L+ DL +A F+ RDI EEL F Y D +F K K
Sbjct: 203 HLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGD----RFWDIKSKYFT- 257
Query: 589 NECRCGSSNC 598
C+CGS C
Sbjct: 258 --CQCGSEKC 265
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 93 NNFDLESPPMDFTYIPSSVPRDGVVVTDD--PVIWCECRGNCVSNRDACCSDLNDADFAY 150
N D E P D+ YI + + + + + C C +C S+ + C L+ + Y
Sbjct: 29 NGVDGEPCPEDYKYISENCETSTMNIDRNITHLQHCTCVDDC-SSSNCLCGQLSIRCW-Y 86
Query: 151 SRRTKRLK-LEKGTP--IYECNKKCACDETCLNRVVQKG 186
+ + L+ K P I+ECN+ C+C C NRVVQ G
Sbjct: 87 DKDGRLLQEFNKIEPPLIFECNQACSCWRNCKNRVVQSG 125
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 98/173 (56%), Gaps = 13/173 (7%)
Query: 428 IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEIL 487
I+ECN C+C C NRVVQ G+ L +++T++ GWGVR+ I GTFVCEYVGE++
Sbjct: 121 IFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGELI 179
Query: 488 THENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNP 547
+ A R +Y F+LD N+D + +DA YGNVS FINH C+PNL R+ +
Sbjct: 180 SDSEADVREEDSYLFDLD-NKDGE--VYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 236
Query: 548 DLH--HVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNC 598
DL +A F+ R I E+L F Y +F K K CRCGS C
Sbjct: 237 DLRFPRIAFFSTRLIEAGEQLGFDY----GERFWDIKGKLF---SCRCGSPKC 282
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 165 IYECNKKCACDETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEY 224
I+ECN C+C C NRVVQ G + +RD + + DI F + EY
Sbjct: 121 IFECNHACSCWRNCRNRVVQNGLRAR--LQLYRTRDMGWGVRSLQDIPPGTF----VCEY 174
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPE 252
E + DS + YL N D E
Sbjct: 175 VGELISDSEADVREEDSYLFDLDNKDGE 202
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 98/173 (56%), Gaps = 13/173 (7%)
Query: 428 IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEIL 487
I+ECN C+C C NRVVQ G+ L +++T++ GWGVR+ I GTFVCEYVGE++
Sbjct: 123 IFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGELI 181
Query: 488 THENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNP 547
+ A R +Y F+LD N+D + +DA YGNVS FINH C+PNL R+ +
Sbjct: 182 SDSEADVREEDSYLFDLD-NKDGE--VYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 238
Query: 548 DLH--HVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNC 598
DL +A F+ R I E+L F Y +F K K CRCGS C
Sbjct: 239 DLRFPRIAFFSTRLIEAGEQLGFDY----GERFWDIKGKLF---SCRCGSPKC 284
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 165 IYECNKKCACDETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEY 224
I+ECN C+C C NRVVQ G + +RD + + DI F + EY
Sbjct: 123 IFECNHACSCWRNCRNRVVQNGLRAR--LQLYRTRDMGWGVRSLQDIPPGTF----VCEY 176
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPE 252
E + DS + YL N D E
Sbjct: 177 VGELISDSEADVREEDSYLFDLDNKDGE 204
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 98/173 (56%), Gaps = 13/173 (7%)
Query: 428 IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEIL 487
I+ECN C+C C NRVVQ G+ L +++T++ GWGVR+ I GTFVCEYVGE++
Sbjct: 97 IFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGELI 155
Query: 488 THENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNP 547
+ A R +Y F+LD N+D + +DA YGNVS FINH C+PNL R+ +
Sbjct: 156 SDSEADVREEDSYLFDLD-NKDGE--VYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 212
Query: 548 DLH--HVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNC 598
DL +A F+ R I E+L F Y +F K K CRCGS C
Sbjct: 213 DLRFPRIAFFSTRLIEAGEQLGFDY----GERFWDIKGKLF---SCRCGSPKC 258
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 165 IYECNKKCACDETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEY 224
I+ECN C+C C NRVVQ G + +RD + + DI F + EY
Sbjct: 97 IFECNHACSCWRNCRNRVVQNGLRAR--LQLYRTRDMGWGVRSLQDIPPGTF----VCEY 150
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPE 252
E + DS + YL N D E
Sbjct: 151 VGELISDSEADVREEDSYLFDLDNKDGE 178
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 97/173 (56%), Gaps = 13/173 (7%)
Query: 428 IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEIL 487
I+ECN C+C C NRVVQ G+ L +++T++ GWGVR+ I GTFVCEYVGE++
Sbjct: 122 IFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRSLQDIPPGTFVCEYVGELI 180
Query: 488 THENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNP 547
+ A R +Y F+LD N+D + +DA YGNVS FINH C+PNL R+ +
Sbjct: 181 SDSEADVREEDSYLFDLD-NKDGE--VYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQ 237
Query: 548 DLH--HVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNC 598
DL +A F+ R I E+L F +F K K CRCGS C
Sbjct: 238 DLRFPRIAFFSTRLIEAGEQLGF----DAGERFWDIKGKLF---SCRCGSPKC 283
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 165 IYECNKKCACDETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEY 224
I+ECN C+C C NRVVQ G + +RD + + DI F + EY
Sbjct: 122 IFECNHACSCWRNCRNRVVQNGLRAR--LQLYRTRDMGWGVRSLQDIPPGTF----VCEY 175
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPE 252
E + DS + YL N D E
Sbjct: 176 VGELISDSEADVREEDSYLFDLDNKDGE 203
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 119/257 (46%), Gaps = 32/257 (12%)
Query: 367 FTYIPSSVPRDGVVVTDDPVIWCEC---RGNCVSNRDACCSDLNDADFAYSRRTKRLKLE 423
F Y P V G + + + C + C+ +C + D R +
Sbjct: 38 FQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGK 97
Query: 424 KGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYV 483
P++ECN C C + C NRVVQKG+ +FKT + +GWG+RT + I G FVCEY
Sbjct: 98 YAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKT-HKKGWGLRTLEFIPKGRFVCEYA 156
Query: 484 GEILTHENALQRTNQTYCFNLDFNQDSNSVAFV-------------LDAARYGNVSHFIN 530
GE+L +R +L DSN + + +D GN+ F+N
Sbjct: 157 GEVLGFSEVQRR------IHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNIGRFLN 210
Query: 531 HSCDPNLEV--SRINNLNPDLHHVALFAKRDINKNEELSF----CYLDLTKAKFTSSKRK 584
HSC+PNL + RI+++ P L ALFA +DI EELS+ YL+LT +
Sbjct: 211 HSCEPNLLMIPVRIDSMVPKL---ALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDH 267
Query: 585 KLVRNECRCGSSNCLGY 601
+R C CG+ +C +
Sbjct: 268 GKLRKPCYCGAKSCTAF 284
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 104 FTYIPSSVPRDGVVVTDDPVIWCEC---RGNCVSNRDACCSDLNDADFAYSRRTKRLKLE 160
F Y P V G + + + C + C+ +C + D R +
Sbjct: 38 FQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGK 97
Query: 161 KGTPIYECNKKCACDETCLNRVVQKG 186
P++ECN C C + C NRVVQKG
Sbjct: 98 YAEPVFECNVLCRCSDHCRNRVVQKG 123
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 435 CACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQ 494
C C E C N+ +Q+ + +GWG+RT + +KAG F+ EY+GE+++ +
Sbjct: 56 CPCGEQCCNQRIQRHEWVQCLERFRAEEKGWGIRTKEPLKAGQFIIEYLGEVVSEQEFRN 115
Query: 495 RT-------NQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNP 547
R + YC NLD V+D+ R GN + FINHSCDPN E+ + ++N
Sbjct: 116 RMIEQYHNHSDHYCLNLD-------SGMVIDSYRMGNEARFINHSCDPNCEMQKW-SVN- 166
Query: 548 DLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNCLG 600
++ + L+A +D+ EL++ D F K++ C+CG C G
Sbjct: 167 GVYRIGLYALKDMPAGTELTY---DYNFHSFNVEKQQL-----CKCGFEKCRG 211
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 85/181 (46%), Gaps = 24/181 (13%)
Query: 428 IYECNKK-CACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEI 486
+YEC+ C C N+ K + IF+T RGWG+RT IK G FV EYVGE+
Sbjct: 67 LYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQ-RGWGLRTKTDIKKGEFVNEYVGEL 125
Query: 487 LTHENA------LQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVS 540
+ E Q + T + L ++D ++DA GN + F+NH C PN E
Sbjct: 126 IDEEECRARIRYAQEHDITNFYMLTLDKDR-----IIDAGPKGNYARFMNHCCQPNCETQ 180
Query: 541 RINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNCLG 600
+ ++N D V LFA DI EL+F Y K V C+CG+ NC G
Sbjct: 181 KW-SVNGDT-RVGLFALSDIKAGTELTFNY------NLECLGNGKTV---CKCGAPNCSG 229
Query: 601 Y 601
+
Sbjct: 230 F 230
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 15/176 (8%)
Query: 428 IYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEIL 487
+ EC+ +C + C NR Q+ + + T+ +GWG+R + + TFV EY GE+L
Sbjct: 93 MIECSSRCPNGDYCSNRRFQRKQHADVEVILTEK-KGWGLRAAKDLPSNTFVLEYCGEVL 151
Query: 488 THENALQRTNQTYCFNLDFNQDSNSVA--FVLDAARYGNVSHFINHSCDPNLEVSRINNL 545
H+ R + Y N + + ++ ++DA + GN S F+NHSC+PN E + +
Sbjct: 152 DHKEFKARVKE-YARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKW-TV 209
Query: 546 NPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNCLGY 601
N L V F + + EL+F D ++ +K C CGS+NC GY
Sbjct: 210 NGQL-RVGFFTTKLVPSGSELTF---DYQFQRYGKEAQK------CFCGSANCRGY 255
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 26/143 (18%)
Query: 464 GWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ-------TYCFNLDFNQDSNSVAFV 516
G G+ I AG V EY G ++ +R Y F +D ++ V
Sbjct: 63 GRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSE-------V 115
Query: 517 LDAARYGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKA 576
+DA +GN + FINHSC+PN SR+ N++ H+ +FA R I + EEL++ Y
Sbjct: 116 VDATMHGNAARFINHSCEPNC-YSRVINIDGQ-KHIVIFAMRKIYRGEELTYDY------ 167
Query: 577 KF-TSSKRKKLVRNECRCGSSNC 598
KF KL C CG+ C
Sbjct: 168 KFPIEDASNKL---PCNCGAKKC 187
>pdb|1G6Z|A Chain A, Solution Structure Of The Clr4 Chromo Domain
Length = 70
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 216 FSSDTMTEYEVESVLD-SLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEF 272
SS EYEVE ++D L+ + +Y ++W NY +TWEP ENL C+ LAE+
Sbjct: 1 ISSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEW 58
>pdb|2DNT|A Chain A, Solution Structure Of Rsgi Ruh-064, A Chromo Domain From
Human Cdna
Length = 78
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEF 272
YEVE ++D + T YLV+WK YD E +TWEP ++L NC + + +F
Sbjct: 14 YEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF 62
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAG 276
+ V+W+ Y PE +TWEPI+NL +C +K+ EF++ G
Sbjct: 334 FKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEG 368
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAG 276
+ V+W+ Y PE +TWEPI+NL +C +K+ EF++ G
Sbjct: 334 FKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEG 368
>pdb|3FDT|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
Length = 59
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
EY VE VLD + YL+KWK + E+NTWEP +NL +C + ++EF+K
Sbjct: 3 EYVVEKVLDR-RVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMK 52
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 14/76 (18%)
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
Y ++S +NHSCDPN + + N P H+ L A RDI EEL+ CYLD+ TS
Sbjct: 234 YPSIS-LLNHSCDPNCSI--VFN-GP---HLLLRAVRDIEVGEELTICYLDML---MTSE 283
Query: 582 KRKKLVRN----ECRC 593
+R+K +R+ EC C
Sbjct: 284 ERRKQLRDQYCFECDC 299
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 14/76 (18%)
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
Y ++S +NHSCDPN + + N P H+ L A RDI EEL+ CYLD+ TS
Sbjct: 199 YPSIS-LLNHSCDPNCSI--VFN-GP---HLLLRAVRDIEVGEELTICYLDML---MTSE 248
Query: 582 KRKKLVRN----ECRC 593
+R+K +R+ EC C
Sbjct: 249 ERRKQLRDQYCFECDC 264
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 14/76 (18%)
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
Y ++S +NHSCDPN + + N P H+ L A RDI EEL+ CYLD+ TS
Sbjct: 200 YPSIS-LLNHSCDPNCSI--VFN-GP---HLLLRAVRDIEVGEELTICYLDML---MTSE 249
Query: 582 KRKKLVRN----ECRC 593
+R+K +R+ EC C
Sbjct: 250 ERRKQLRDQYCFECDC 265
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 14/76 (18%)
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
Y ++S +NHSCDPN + + N P H+ L A RDI EEL+ CYLD+ TS
Sbjct: 198 YPSIS-LLNHSCDPNCSI--VFN-GP---HLLLRAVRDIEVGEELTICYLDML---MTSE 247
Query: 582 KRKKLVRN----ECRC 593
+R+K +R+ EC C
Sbjct: 248 ERRKQLRDQYCFECDC 263
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 14/76 (18%)
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
Y ++S +NHSCDPN + + N P H+ L A RDI EEL+ CYLD+ TS
Sbjct: 198 YPSIS-LLNHSCDPNCSI--VFN-GP---HLLLRAVRDIEVGEELTICYLDML---MTSE 247
Query: 582 KRKKLVRN----ECRC 593
+R+K +R+ EC C
Sbjct: 248 ERRKQLRDQYCFECDC 263
>pdb|3F2U|A Chain A, Crystal Structure Of Human Chromobox Homolog 1 (Cbx1)
Length = 55
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
EY VE VLD + YL+KWK + E NTWEP ENL +C +AEFL++
Sbjct: 2 EYVVEKVLDR-RVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS 52
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 461 NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTN------QTYCFNLDFNQDSNSVA 514
+ +G GV + G FV EY G+++ +A +R T C+ F S +
Sbjct: 37 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKT-- 94
Query: 515 FVLDAARYGN-VSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDL 573
+ +DA R N + INHS N + +++++++ + H+ L A RDI EEL + Y D
Sbjct: 95 YCVDATRETNRLGRLINHSKSGNCQ-TKLHDID-GVPHLILIASRDIAAGEELLYDYGDR 152
Query: 574 TKA 576
+KA
Sbjct: 153 SKA 155
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 461 NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTN------QTYCFNLDFNQDSNSVA 514
+ +G GV + G FV EY G+++ +A +R T C+ F S +
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKT-- 95
Query: 515 FVLDAARYGN-VSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDL 573
+ +DA R N + INHS N + +++++++ + H+ L A RDI EEL F Y D
Sbjct: 96 YCVDATRETNRLGRLINHSKCGNCQ-TKLHDID-GVPHLILIASRDIAAGEELLFDYGDR 153
Query: 574 TKA 576
+KA
Sbjct: 154 SKA 156
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 14/76 (18%)
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
Y ++S +NHSCDPN + + N P H+ L A RDI EEL+ CYLD TS
Sbjct: 199 YPSIS-LLNHSCDPNCSI--VFN-GP---HLLLRAVRDIEVGEELTICYLDXLX---TSE 248
Query: 582 KRKKLVRN----ECRC 593
+R+K +R+ EC C
Sbjct: 249 ERRKQLRDQYCFECDC 264
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 461 NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTN------QTYCFNLDFNQDSNSVA 514
+ +G GV + G FV EY G+++ +A +R T C+ F S +
Sbjct: 39 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKT-- 96
Query: 515 FVLDAARYGN-VSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDL 573
+ +DA R N + INHS N + +++++++ + H+ L A RDI EEL + Y D
Sbjct: 97 YCVDATRETNRLGRLINHSKCGNCQ-TKLHDID-GVPHLILIASRDIAAGEELLYDYGDR 154
Query: 574 TKA 576
+KA
Sbjct: 155 SKA 157
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 461 NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTN------QTYCFNLDFNQDSNSVA 514
+ +G GV + G FV EY G+++ +A +R T C+ F S +
Sbjct: 33 DGKGRGVIATKQFSRGDFVVEYHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKT-- 90
Query: 515 FVLDAARYGN-VSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDL 573
+ +DA R N + INHS N + +++++++ + H+ L A RDI EEL + Y D
Sbjct: 91 YCVDATRETNRLGRLINHSKCGNCQ-TKLHDID-GVPHLILIASRDIAAGEELLYDYGDR 148
Query: 574 TKA 576
+KA
Sbjct: 149 SKA 151
>pdb|1AP0|A Chain A, Structure Of The Chromatin Binding (Chromo) Domain From
Mouse Modifier Protein 1, Nmr, 26 Structures
pdb|1GUW|A Chain A, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 73
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQERTD 283
YL+KWK + E NTWEP ENL +C +AEFL++ TD
Sbjct: 31 YLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQKTAHETD 71
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 11/123 (8%)
Query: 461 NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTN------QTYCFNLDFNQDSNSVA 514
+ +G GV + G FV E+ G+++ +A +R T C+ F S +
Sbjct: 38 DGKGRGVIATKQFSRGDFVVEFHGDLIEITDAKKREALYAQDPSTGCYMYYFQYLSKT-- 95
Query: 515 FVLDAARYGN-VSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDL 573
+ +DA R N + INHS N + +++++++ + H+ L A RDI EEL + Y D
Sbjct: 96 YCVDATRETNRLGRLINHSKCGNCQ-TKLHDID-GVPHLILIASRDIAAGEELLYDYGDR 153
Query: 574 TKA 576
+KA
Sbjct: 154 SKA 156
>pdb|3QO2|A Chain A, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|B Chain B, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|C Chain C, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
pdb|3QO2|D Chain D, Structural Insights For Mpp8 Chromodomain Interaction With
Histone H3 Lysine 9
Length = 64
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+EVE +LD ++ +Y V+WK Y + +TWEP +L +C + L EF K
Sbjct: 7 FEVEKILD-MKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRK 56
>pdb|2K28|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 4
Length = 60
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKW+ + P+YNTWEP EN+
Sbjct: 23 YLVKWRGWSPKYNTWEPEENI 43
>pdb|3I8Z|A Chain A, Crystal Structure Of Human Chromobox Homolog 4 (Cbx4)
Length = 55
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKW+ + P+YNTWEP EN+
Sbjct: 21 YLVKWRGWSPKYNTWEPEENI 41
>pdb|3LWE|A Chain A, The Crystal Structure Of Mpp8
pdb|3LWE|B Chain B, The Crystal Structure Of Mpp8
pdb|3R93|A Chain A, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|B Chain B, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|C Chain C, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|D Chain D, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3SVM|A Chain A, Human Mpp8 - Human Dnmt3ak47me2 Peptide
Length = 62
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+EVE +LD ++ +Y V+WK Y + +TWEP +L +C + L EF K
Sbjct: 5 FEVEKILD-MKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRK 54
>pdb|4HAE|A Chain A, Crystal Structure Of The Cdyl2-Chromodomain
Length = 81
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEF 272
YEVE ++D + YL++WK Y +TWEP +L +C + + EF
Sbjct: 24 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF 72
>pdb|2DNV|A Chain A, Solution Structure Of Rsgi Ruh-055, A Chromo Domain From
Mus Musculus Cdna
Length = 64
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGP 277
YLVKWK + +Y+TWEP EN+ + A+ LA F ++GP
Sbjct: 28 YLVKWKGWSQKYSTWEPEENILD-ARLLAAF-ESGP 61
>pdb|2L12|A Chain A, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|2L1B|A Chain A, Solution Nmr Structure Of The Chromobox Protein Cbx7 With
H3k27me3
Length = 56
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKWK + P+Y+TWEP E++
Sbjct: 22 YLVKWKGWPPKYSTWEPEEHI 42
>pdb|2KVM|A Chain A, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 74
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKWK + P+Y+TWEP E++
Sbjct: 31 YLVKWKGWPPKYSTWEPEEHI 51
>pdb|2K1B|A Chain A, Solution Nmr Structure Of The Chromo Domain Of The
Chromobox Protein Homolog 7
Length = 73
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKWK + P+Y+TWEP E++
Sbjct: 39 YLVKWKGWPPKYSTWEPEEHI 59
>pdb|3I91|A Chain A, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With
H3k9 Peptide
pdb|3I91|B Chain B, Crystal Structure Of Human Chromobox Homolog 8 (Cbx8) With
H3k9 Peptide
Length = 54
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGNCAKKLAEF 272
YLVKWK + +Y+TWEP EN+ + A+ LA F
Sbjct: 21 YLVKWKGWSQKYSTWEPEENILD-ARLLAAF 50
>pdb|3DM1|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|E Chain E, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
pdb|3DM1|G Chain G, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3) With Peptide
Length = 58
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFL---KAGPDQ 279
E+ VE VLD + + Y +KWK + NTWEP ENL +C + + FL KAG ++
Sbjct: 1 EFVVEKVLDR-RVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKEK 58
>pdb|2RSN|A Chain A, Solution Structure Of The Chromodomain Of Chp1 In Complex
With H3k9me3 Peptide
Length = 75
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENL 262
YEVE +L + + Y +KW YD NTWEP +NL
Sbjct: 22 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 60
>pdb|3G7L|A Chain A, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 61
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENL 262
YEVE +L + + Y +KW YD NTWEP +NL
Sbjct: 8 YEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNL 46
>pdb|2L11|A Chain A, Solution Nmr Structure Of The Cbx3 In Complex With H3k9me3
Peptide
Length = 54
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
E+ VE VLD + + Y +KWK + NTWEP ENL +C + + FL +
Sbjct: 2 EFVVEKVLDR-RVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNS 52
>pdb|3TZD|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 3 (cbx3)
Length = 58
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
E+ VE VLD + + Y +KWK + NTWEP ENL +C + + FL +
Sbjct: 6 EFVVEKVLDR-RVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNS 56
>pdb|3I90|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k27 Peptide
pdb|3I90|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k27 Peptide
Length = 51
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKWK + +Y+TWEP EN+
Sbjct: 20 YLVKWKGWAIKYSTWEPEENI 40
>pdb|3MTS|A Chain A, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
pdb|3MTS|B Chain B, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
pdb|3MTS|C Chain C, Chromo Domain Of Human Histone-lysine N-methyltransferase
Suv39h1
Length = 64
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
EVE + D ++ + YLVKW+ Y +TWEP +NL C + L +F K
Sbjct: 2 EVEYLCDYKKI-REQEYYLVKWRGYPDSESTWEPRQNL-KCVRILKQFHK 49
>pdb|3GV6|A Chain A, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6) With
H3k9 Peptide
Length = 58
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKWK + +Y+TWEP EN+
Sbjct: 21 YLVKWKGWAIKYSTWEPEENI 41
>pdb|1KNA|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|A Chain A, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|A Chain A, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9
Length = 69
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 224 YEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENL 262
Y VE ++D + M Y +KWK Y NTWEP NL
Sbjct: 17 YAVEKIIDR-RVRKGMVEYYLKWKGYPETENTWEPENNL 54
>pdb|2D9U|A Chain A, Solution Structure Of The Chromo Domain Of Chromobox
Homolog 2 From Human
Length = 74
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKW+ + ++N+WEP EN+
Sbjct: 28 YLVKWRGWSSKHNSWEPEENI 48
>pdb|3H91|A Chain A, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|B Chain B, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
Length = 54
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
YLVKW+ + ++N+WEP EN+
Sbjct: 21 YLVKWRGWSSKHNSWEPEENI 41
>pdb|1PFB|A Chain A, Structural Basis For Specific Binding Of Polycomb
Chromodomain To Histone H3 Methylated At K27
Length = 55
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
Y VKWK ++ YNTWEP N+
Sbjct: 21 YRVKWKGWNQRYNTWEPEVNI 41
>pdb|1PDQ|A Chain A, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 72
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
Y VKWK ++ YNTWEP N+
Sbjct: 38 YRVKWKGWNQRYNTWEPEVNI 58
>pdb|3SQN|A Chain A, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
pdb|3SQN|B Chain B, Putative Mga Family Transcriptional Regulator From
Enterococcus Faecalis
Length = 485
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 66 KQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPVIW 125
K L IR E+ N TA RL + + D YI S +P D + TD I
Sbjct: 15 KDLLRQIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIR 74
Query: 126 CECRGNCVSN 135
+GN +N
Sbjct: 75 LRNQGNAQTN 84
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 329 KQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPVIW 388
K L IR E+ N TA RL + + D YI S +P D + TD I
Sbjct: 15 KDLLRQIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIR 74
Query: 389 CECRGNCVSN 398
+GN +N
Sbjct: 75 LRNQGNAQTN 84
>pdb|2B2U|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2V|C Chain C, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2W|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
pdb|2B2Y|C Chain C, Tandem Chromodomains Of Human Chd1
Length = 115
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGN----CAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEE 297
YL+KWK + +NTWE E L KKL + K DQE K +L + E
Sbjct: 60 YLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK--DQE------TKRWLKNASPE 111
Query: 298 EVE 300
+VE
Sbjct: 112 DVE 114
>pdb|2B2T|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
pdb|2B2T|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 187
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGN----CAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEE 297
YL+KWK + +NTWE E L KKL + K DQE K +L + E
Sbjct: 60 YLIKWKGWSHIHNTWETEETLKQQNVRGXKKLDNYKKK--DQE------TKRWLKNASPE 111
Query: 298 EVE 300
+VE
Sbjct: 112 DVE 114
>pdb|2B2U|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2U|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Dimethylarginine 2
pdb|2B2V|A Chain A, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2V|B Chain B, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
pdb|2B2W|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
pdb|2B2W|B Chain B, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4
pdb|2B2Y|A Chain A, Tandem Chromodomains Of Human Chd1
pdb|2B2Y|B Chain B, Tandem Chromodomains Of Human Chd1
Length = 187
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGN----CAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEE 297
YL+KWK + +NTWE E L KKL + K DQE K +L + E
Sbjct: 60 YLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK--DQE------TKRWLKNASPE 111
Query: 298 EVE 300
+VE
Sbjct: 112 DVE 114
>pdb|2B2T|C Chain C, Tandem Chromodomains Of Human Chd1 Complexed With Histone
H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 115
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGN----CAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEE 297
YL+KWK + +NTWE E L KKL + K DQE K +L + E
Sbjct: 60 YLIKWKGWSHIHNTWETEETLKQQNVRGXKKLDNYKKK--DQE------TKRWLKNASPE 111
Query: 298 EVE 300
+VE
Sbjct: 112 DVE 114
>pdb|2QP2|A Chain A, Structure Of A Macpf/perforin-like Protein
Length = 511
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 12/130 (9%)
Query: 480 CEYVGEILTHENALQRTNQTYCFNLDFNQDSN-----SVAFVLDAARYGNVSHFINHSCD 534
+Y+ EI+ N + Y L +D N ++ + A+Y + N C
Sbjct: 359 ADYIDEIIIGINNTNTPPEGY-IGLKSTKDENLNSKGNICLFMHKAKYD--PNIDNKDCI 415
Query: 535 PNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNEC-RC 593
L+ + + +P+ V + I+ N+ L CYL AK+++ K K ++ C C
Sbjct: 416 TELKFITVRDKSPEGDWVKIPQDIYISPNQYLYLCYL---PAKYSAEKAIKDIQLLCSSC 472
Query: 594 GSSNCLGYYY 603
GSS L Y Y
Sbjct: 473 GSSMILPYGY 482
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 7 NSLRRKGENGELTTLIE-PNADEVHRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFLHGKR 65
++L+R EL T+ + P+A + HR+ S N KL A Y L F+ +
Sbjct: 552 DTLKRMMSASELDTMWKNPSAKQYHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQ 611
Query: 66 KQQLANIREAEERYN 80
Q N+R E ++
Sbjct: 612 LSQYENVRAEFESHS 626
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 7 NSLRRKGENGELTTLIE-PNADEVHRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFLHGKR 65
++L+R EL T+ + P+A + HR+ S N KL A Y L F+ +
Sbjct: 552 DTLKRMMSASELDTMWKNPSAKQYHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQ 611
Query: 66 KQQLANIREAEERYN 80
Q N+R E ++
Sbjct: 612 LSQYENVRAEFESHS 626
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 7 NSLRRKGENGELTTLIE-PNADEVHRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFLHGKR 65
++L+R EL T+ + P+A + HR+ S N KL A Y L F+ +
Sbjct: 552 DTLKRMMSASELDTMWKNPSAKQYHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQ 611
Query: 66 KQQLANIREAEERYN 80
Q N+R E ++
Sbjct: 612 LSQYENVRAEFESHS 626
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 7 NSLRRKGENGELTTLIE-PNADEVHRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFLHGKR 65
++L+R EL T+ + P+A + HR+ S N KL A Y L F+ +
Sbjct: 552 DTLKRMMSASELDTMWKNPSAKQYHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQ 611
Query: 66 KQQLANIREAEERYN 80
Q N+R E ++
Sbjct: 612 LSQYENVRAEFESHS 626
>pdb|1J5Q|A Chain A, The Structure And Evolution Of The Major Capsid Protein Of
A Large, Lipid-Containing, Dna Virus.
pdb|1J5Q|B Chain B, The Structure And Evolution Of The Major Capsid Protein Of
A Large, Lipid-Containing, Dna Virus.
pdb|3KK5|A Chain A, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|B Chain B, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|C Chain C, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|D Chain D, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|E Chain E, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|F Chain F, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|G Chain G, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|H Chain H, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|I Chain I, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|J Chain J, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|K Chain K, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|L Chain L, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|M Chain M, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
Length = 437
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 176 ETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEYEVESVLDSLEL 235
+ +N V GN V +T SR+G ++ V + LTK + T Y E +L +EL
Sbjct: 43 QQTINGSVGFGNKV----STQISRNGDLITDIVVEFVLTKGGNGGTTYYPAEELLQDVEL 98
Query: 236 TSDMTVYLVKWKNYDPEYNTW 256
+ + D YN W
Sbjct: 99 E-------IGGQRIDKHYNDW 112
>pdb|1M4X|A Chain A, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|B Chain B, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|C Chain C, Pbcv-1 Virus Capsid, Quasi-Atomic Model
Length = 413
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 176 ETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEYEVESVLDSLEL 235
+ +N V GN V +T SR+G ++ V + LTK + T Y E +L +EL
Sbjct: 19 QQTINGSVGFGNKV----STQISRNGDLITDIVVEFVLTKGGNGGTTYYPAEELLQDVEL 74
Query: 236 TSDMTVYLVKWKNYDPEYNTW 256
+ + D YN W
Sbjct: 75 E-------IGGQRIDKHYNDW 88
>pdb|1M3Y|A Chain A, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|B Chain B, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|C Chain C, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|D Chain D, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
Length = 413
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 11/81 (13%)
Query: 176 ETCLNRVVQKGNLVQDCHTTITSRDGSVVLLRVADINLTKFSSDTMTEYEVESVLDSLEL 235
+ +N V GN V +T SR+G ++ V + LTK + T Y E +L +EL
Sbjct: 19 QQTINGSVGFGNKV----STQISRNGDLITDIVVEFVLTKGGNGGTTYYPAEELLQDVEL 74
Query: 236 TSDMTVYLVKWKNYDPEYNTW 256
+ + D YN W
Sbjct: 75 E-------IGGQRIDKHYNDW 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,938,499
Number of Sequences: 62578
Number of extensions: 747309
Number of successful extensions: 2011
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1882
Number of HSP's gapped (non-prelim): 96
length of query: 605
length of database: 14,973,337
effective HSP length: 104
effective length of query: 501
effective length of database: 8,465,225
effective search space: 4241077725
effective search space used: 4241077725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)