RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14657
(605 letters)
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 277 bits (711), Expect = 2e-89
Identities = 119/288 (41%), Positives = 159/288 (55%), Gaps = 21/288 (7%)
Query: 327 KRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPV 386
K+ +Q ++ ++ N + +EN DLE PP DF YI P G+ + ++
Sbjct: 19 KKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEAT 78
Query: 387 IWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVV 446
C C CC AY++ +++K+ GTPIYECN +C C C NR+V
Sbjct: 79 FGCSCTDCFFQK---CCPAEAGVLLAYNKN-QQIKIPPGTPIYECNSRCQCGPDCPNRIV 134
Query: 447 QKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ------TY 500
QKG L IF+T N RGWGV+T KIK +FV EYVGE++T E A +R TY
Sbjct: 135 QKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEYVGEVITSEEAERRGQFYDNKGITY 194
Query: 501 CFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVS--RINNLNPDLHHVALFAKR 558
F+LD+ D F +DAARYGNVSHF+NHSCDPNL+V I+NL+ L +ALF+ R
Sbjct: 195 LFDLDYESD----EFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTR 250
Query: 559 DINKNEELSFCY-----LDLTKAKFTSSKRKKLVRNECRCGSSNCLGY 601
IN EEL+F Y D++ S KK VR C+CG+ C GY
Sbjct: 251 TINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGY 298
Score = 112 bits (282), Expect = 8e-28
Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 64 KRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPV 123
K+ +Q ++ ++ N + +EN DLE PP DF YI P G+ + ++
Sbjct: 19 KKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEAT 78
Query: 124 IWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVV 183
C C CC AY++ +++K+ GTPIYECN +C C C NR+V
Sbjct: 79 FGCSCTDCFFQK---CCPAEAGVLLAYNKN-QQIKIPPGTPIYECNSRCQCGPDCPNRIV 134
Query: 184 QKG 186
QKG
Sbjct: 135 QKG 137
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 262 bits (672), Expect = 1e-83
Identities = 99/272 (36%), Positives = 139/272 (51%), Gaps = 25/272 (9%)
Query: 353 TLENNFDLES-PPMDFTYIPSSVPRDGVVVTDDPVIW---CECRGNCVSNRDACCS---- 404
TL N D E P +DF +I GV+ D C G C N + C
Sbjct: 31 TLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD 90
Query: 405 DLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRG 464
FAY R++ + G IYECN C+C C NRVVQ+G TLPL IFKTK +G
Sbjct: 91 LDEPTHFAYDA-QGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTK-EKG 148
Query: 465 WGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ------TYCFNLDFNQDSNSVAFVLD 518
WGVR+ AGTF+ Y+GE++T A +R TY F+LD D++ + +D
Sbjct: 149 WGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDAS--EYTVD 206
Query: 519 AARYGNVSHFINHSCDPNLEVSR--INNLNPDLHHVALFAKRDINKNEELSFCY-----L 571
A YG+VS F NHSC PN+ + N+ ++ +A FA +DI EEL+F Y
Sbjct: 207 AQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDF 266
Query: 572 DLTKAKFTSSKRKKLVRNECRCGSSNCLGYYY 603
+++ + R +R +C+CGS+NC G+ +
Sbjct: 267 SPVQSQKSQQNRISKLRRQCKCGSANCRGWLF 298
Score = 86.4 bits (214), Expect = 7e-19
Identities = 36/105 (34%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 90 TLENNFDLES-PPMDFTYIPSSVPRDGVVVTDDPVIW---CECRGNCVSNRDACCS---- 141
TL N D E P +DF +I GV+ D C G C N + C
Sbjct: 31 TLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD 90
Query: 142 DLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
FAY R++ + G IYECN C+C C NRVVQ+G
Sbjct: 91 LDEPTHFAYDA-QGRVRADTGAVIYECNSFCSCSMECPNRVVQRG 134
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 245 bits (627), Expect = 7e-77
Identities = 90/291 (30%), Positives = 128/291 (43%), Gaps = 41/291 (14%)
Query: 353 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPVIW-CECRGNCVSNRDAC-CSDLNDAD 410
++ N D +F +I S+ V V D C C + C C D D
Sbjct: 13 SIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPD 72
Query: 411 FAYSR-------------------RTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGIT 451
+ L+ PIYEC++ CAC + C NRVV++G T
Sbjct: 73 SDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRT 132
Query: 452 LPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ--------TYCFN 503
+PL IF+TK +RGWGV+ P IK G FV Y+GEI+T E A +R + Y F
Sbjct: 133 VPLQIFRTK-DRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFA 191
Query: 504 LDFNQDSNSV-------AFVLDAARYGNVSHFINHSCDPNLEVSR--INNLNPDLHHVAL 554
LD D +S+ +D + FINHSCDPN+ + ++ + +H +AL
Sbjct: 192 LDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLAL 251
Query: 555 FAKRDINKNEELSFCY--LDLTKAKFTSSKRKKLVRNECRCGSSNCLGYYY 603
FA +DI K EL+F Y K +C CG++ C GY +
Sbjct: 252 FAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRGYLW 302
Score = 84.6 bits (209), Expect = 3e-18
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 21/118 (17%)
Query: 90 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPVIW-CECRGNCVSNRDAC-CSDLNDAD 147
++ N D +F +I S+ V V D C C + C C D D
Sbjct: 13 SIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPD 72
Query: 148 FAYSR-------------------RTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
+ L+ PIYEC++ CAC + C NRVV++G
Sbjct: 73 SDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERG 130
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 240 bits (614), Expect = 4e-75
Identities = 77/260 (29%), Positives = 114/260 (43%), Gaps = 16/260 (6%)
Query: 356 NNFDLESPPMDFTYIPSSVPRDGVVV--TDDPVIWCECRGNCVSNRDACCSDLNDADFAY 413
+ + P F Y P V G + T C C C +
Sbjct: 27 GAWPPGAAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDN 86
Query: 414 SR-RTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDK 472
S R + P++ECN C C + C NRVVQKG+ +FKT +GWG+RT +
Sbjct: 87 SCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKGLQFHFQVFKTH-KKGWGLRTLEF 145
Query: 473 IKAGTFVCEYVGEILTHENALQRTNQ------TYCFNLDFNQDSNSVA-FVLDAARYGNV 525
I G FVCEY GE+L +R + Y + + + V +D GN+
Sbjct: 146 IPKGRFVCEYAGEVLGFSEVQRRIHLQTKSDSNYIIAIREHVYNGQVMETFVDPTYIGNI 205
Query: 526 SHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCY----LDLTKAKFTSS 581
F+NHSC+PNL + + ++ + +ALFA +DI EELS+ Y L+LT +
Sbjct: 206 GRFLNHSCEPNLLMIPV-RIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKER 264
Query: 582 KRKKLVRNECRCGSSNCLGY 601
+R C CG+ +C +
Sbjct: 265 LDHGKLRKPCYCGAKSCTAF 284
Score = 79.1 bits (195), Expect = 2e-16
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Query: 93 NNFDLESPPMDFTYIPSSVPRDGVVV--TDDPVIWCECRGNCVSNRDACCSDLNDADFAY 150
+ + P F Y P V G + T C C C +
Sbjct: 27 GAWPPGAAPAPFQYTPDHVVGPGADIDPTQITFPGCICVKTPCLPGTCSCLRHGENYDDN 86
Query: 151 SR-RTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
S R + P++ECN C C + C NRVVQKG
Sbjct: 87 SCLRDIGSGGKYAEPVFECNVLCRCSDHCRNRVVQKG 123
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 239 bits (612), Expect = 7e-75
Identities = 81/253 (32%), Positives = 120/253 (47%), Gaps = 16/253 (6%)
Query: 353 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDP--VIWCECRGNCVSNRDAC-CSDLNDA 409
N D E P ++ Y+ + + + + + +C C +C S+ C +
Sbjct: 45 PCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCW 104
Query: 410 DFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRT 469
R + + I+ECN C+C C NRVVQ G+ L +++T++ GWGVR+
Sbjct: 105 YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRD-MGWGVRS 163
Query: 470 PDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFI 529
I GTFVCEYVGE+++ A R +Y F+LD + +DA YGNVS FI
Sbjct: 164 LQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGE---VYCIDARFYGNVSRFI 220
Query: 530 NHSCDPNLEVSR--INNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLV 587
NH C+PNL R + + + +A F+ R I E+L F Y + +F K K
Sbjct: 221 NHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGE----RFWDIKGKLF- 275
Query: 588 RNECRCGSSNCLG 600
CRCGS C
Sbjct: 276 --SCRCGSPKCRH 286
Score = 87.3 bits (216), Expect = 3e-19
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 90 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDP--VIWCECRGNCVSNRDAC-CSDLNDA 146
N D E P ++ Y+ + + + + + +C C +C S+ C +
Sbjct: 45 PCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCW 104
Query: 147 DFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
R + + I+ECN C+C C NRVVQ G
Sbjct: 105 YDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNG 144
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 210 bits (536), Expect = 2e-64
Identities = 70/245 (28%), Positives = 111/245 (45%), Gaps = 45/245 (18%)
Query: 367 FTYIPSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSD-LNDADFAYSRRTKRLKLEKG 425
+ I S+V D ++ C C+ R C D LN R+
Sbjct: 3 YKKIRSNVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLN-----------RM----- 46
Query: 426 TPIYECN-KKCACDETCLNRVVQKGITLP-LTIFKTKNNRGWGVRTPDKIKAGTFVCEYV 483
EC+ C C E C N+ +Q+ + L F+ + +GWG+RT + +KAG F+ EY+
Sbjct: 47 -IFAECSPNTCPCGEQCCNQRIQRHEWVQCLERFRAEE-KGWGIRTKEPLKAGQFIIEYL 104
Query: 484 GEILTHENALQRTNQ-------TYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPN 536
GE+++ + R + YC NLD V+D+ R GN + FINHSCDPN
Sbjct: 105 GEVVSEQEFRNRMIEQYHNHSDHYCLNLDSG-------MVIDSYRMGNEARFINHSCDPN 157
Query: 537 LEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSS 596
E+ + + ++ + L+A +D+ EL++ Y F S +K + C+CG
Sbjct: 158 CEMQKWS--VNGVYRIGLYALKDMPAGTELTYDY------NFHSFNVEK--QQLCKCGFE 207
Query: 597 NCLGY 601
C G
Sbjct: 208 KCRGI 212
Score = 58.1 bits (141), Expect = 9e-10
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 104 FTYIPSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSD-LNDADFAYSRRTKRLKLEKG 162
+ I S+V D ++ C C+ R C D LN R+
Sbjct: 3 YKKIRSNVYVDVKPLSGYEATTCNCKKPDDDTRKGCVDDCLN-----------RM----- 46
Query: 163 TPIYECN-KKCACDETCLNRVVQKG 186
EC+ C C E C N+ +Q+
Sbjct: 47 -IFAECSPNTCPCGEQCCNQRIQRH 70
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing
protein 2, S-adenos methionine, structural genomics,
structural genomics consor SGC; HET: SAM; 1.99A {Homo
sapiens}
Length = 278
Score = 207 bits (529), Expect = 8e-63
Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 39/259 (15%)
Query: 353 TLENNFDLESPPMDFTYIPSSV--PRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDAD 410
+ P F I +V + + +C +S + ++ +
Sbjct: 26 RWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGE 85
Query: 411 FAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTP 470
+R + EC+ +C + C NR Q+ + + T+ +GWG+R
Sbjct: 86 DCLNR----------LLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEK-KGWGLRAA 134
Query: 471 DKIKAGTFVCEYVGEILTHENALQRTNQ--------TYCFNLDFNQDSNSVAFVLDAARY 522
+ + TFV EY GE+L H+ R + Y L + ++DA +
Sbjct: 135 KDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKND-------EIIDATQK 187
Query: 523 GNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSK 582
GN S F+NHSC+PN E + V F + + EL+F Y +F
Sbjct: 188 GNCSRFMNHSCEPNCETQKWTVNG--QLRVGFFTTKLVPSGSELTFDY------QFQRYG 239
Query: 583 RKKLVRNECRCGSSNCLGY 601
++ +C CGS+NC GY
Sbjct: 240 KEAQ---KCFCGSANCRGY 255
Score = 56.3 bits (136), Expect = 6e-09
Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 12/99 (12%)
Query: 90 TLENNFDLESPPMDFTYIPSSV--PRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDAD 147
+ P F I +V + + +C +S + ++ +
Sbjct: 26 RWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGE 85
Query: 148 FAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
+R + EC+ +C + C NR Q+
Sbjct: 86 DCLNR----------LLMIECSSRCPNGDYCSNRRFQRK 114
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 187 bits (478), Expect = 5e-56
Identities = 68/260 (26%), Positives = 98/260 (37%), Gaps = 48/260 (18%)
Query: 354 LENNFDLESPPMDFTYIPSSVPRDGVVV---TDDPVIWCECRGNCVSNRDACCSDLNDAD 410
L+ + + P + +I + P V + + C C+ + C D +
Sbjct: 7 LQEDRKNDKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATD---ENPCGIDSECIN 63
Query: 411 FAYSRRTKRLKLEKGTPIYECNKK-CACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRT 469
+YEC+ C C N+ K + IF+T RGWG+RT
Sbjct: 64 RM--------------LLYECHPTVCPAGGRCQNQCFSKRQYPEVEIFRTLQ-RGWGLRT 108
Query: 470 PDKIKAGTFVCEYVGEILTHENALQRTNQ--------TYCFNLDFNQDSNSVAFVLDAAR 521
IK G FV EYVGE++ E R Y LD + ++DA
Sbjct: 109 KTDIKKGEFVNEYVGELIDEEECRARIRYAQEHDITNFYMLTLDKD-------RIIDAGP 161
Query: 522 YGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSS 581
GN + F+NH C PN E + + V LFA DI EL+F Y
Sbjct: 162 KGNYARFMNHCCQPNCETQKWSVNG--DTRVGLFALSDIKAGTELTFNY------NLECL 213
Query: 582 KRKKLVRNECRCGSSNCLGY 601
K C+CG+ NC G+
Sbjct: 214 GNGKT---VCKCGAPNCSGF 230
Score = 43.9 bits (104), Expect = 5e-05
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 21/100 (21%)
Query: 91 LENNFDLESPPMDFTYIPSSVPRDGVVV---TDDPVIWCECRGNCVSNRDACCSDLNDAD 147
L+ + + P + +I + P V + + C C+ + C D +
Sbjct: 7 LQEDRKNDKKPPPYKHIKVNRPIGRVQIFTADLSEIPRCNCKATD---ENPCGIDSECIN 63
Query: 148 FAYSRRTKRLKLEKGTPIYECNKK-CACDETCLNRVVQKG 186
+YEC+ C C N+ K
Sbjct: 64 RM--------------LLYECHPTVCPAGGRCQNQCFSKR 89
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET,
lysine, alternative splicing, cell cycle, cell division,
chromatin regulator, chromosomal protein, coiled coil;
HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A*
3f9z_A* 1zkk_A* 2bqz_A*
Length = 166
Score = 145 bits (369), Expect = 3e-41
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 431 CNKKCACDE-TCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTH 489
+ +E ++ +++ G + I + +G GV + G FV EY G+++
Sbjct: 8 SKAELQSEERKRIDELIESGKEEGMKIDLI-DGKGRGVIATKQFSRGDFVVEYHGDLIEI 66
Query: 490 ENALQRTNQ------TYCFNLDFNQDSNSVAFVLDAARYGN-VSHFINHSCDPNLEVSRI 542
+A +R T C+ F S + + +DA R N + INHS N +
Sbjct: 67 TDAKKREALYAQDPSTGCYMYYFQYLSKT--YCVDATRETNRLGRLINHSKCGNCQTKLH 124
Query: 543 NNLNPDLHHVALFAKRDINKNEELSFCYLD 572
+ + H+ L A RDI EEL F Y D
Sbjct: 125 DIDG--VPHLILIASRDIAAGEELLFDYGD 152
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation,
chromosomal rearrangement, protein lysine
methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo
sapiens} PDB: 2w5z_A*
Length = 192
Score = 146 bits (370), Expect = 5e-41
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 28/182 (15%)
Query: 430 ECNKKCACDETCLN---RVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEI 486
+ ++ + + R ++K + ++++ G G+ I AG V EY G +
Sbjct: 27 KSARRATSMDLPMPMRFRHLKKTSKEAVGVYRSPI-HGRGLFCKRNIDAGEMVIEYAGNV 85
Query: 487 LTHENALQRTNQ-------TYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEV 539
+ +R Y F +D + V+DA +GN + FINHSC+PN
Sbjct: 86 IRSIQTDKREKYYDSKGIGCYMFRIDDS-------EVVDATMHGNAARFINHSCEPNCYS 138
Query: 540 SRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNCL 599
IN H+ +FA R I + EEL++ Y KF + C CG+ C
Sbjct: 139 RVINID--GQKHIVIFAMRKIYRGEELTYDY------KFPIEDASN--KLPCNCGAKKCR 188
Query: 600 GY 601
+
Sbjct: 189 KF 190
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 114 bits (287), Expect = 7e-29
Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 14/185 (7%)
Query: 391 CRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGI 450
G + + A + +L G +Y +K N ++
Sbjct: 55 IDGEMIEGKLATL-------MSTEEGRPHFELMPGNSVYHFDK-STSSCISTNALLPDPY 106
Query: 451 TLPLTIFKTKN--NRGWGVRTPDKIKAGTFVCEYVGEILTHENALQR--TNQTYCFNLDF 506
+ G G+ + + T + Y G +TH+ R +LD
Sbjct: 107 ESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDE 166
Query: 507 NQDSNSVAFVLDAARY-GNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEE 565
+ ++Y ++ H NHS PN + + R + +EE
Sbjct: 167 ETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGP-IKCIRTLRAVEADEE 225
Query: 566 LSFCY 570
L+ Y
Sbjct: 226 LTVAY 230
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 100 bits (251), Expect = 2e-25
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 453 PLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNS 512
+ + K+ G+GV + G V E + + +++ Y F+ N
Sbjct: 5 RVIVKKSPL-GGYGVFARKSFEKGELVEECLCIVRHNDDWGTALE-DYLFSRK-----NM 57
Query: 513 VAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCY 570
A L NHS DPN L + +F + I EE++ Y
Sbjct: 58 SAMALGFGA------IFNHSKDPNARHELTA----GLKRMRIFTIKPIAIGEEITISY 105
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 86.3 bits (213), Expect = 6e-19
Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 23/156 (14%)
Query: 448 KGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRT---NQTYCFNL 504
G + + G + + K + VG I + + F++
Sbjct: 131 SGFEILPCNRYSSEQNGAKIVATKEWKRNDKIELLVGCIAELSEIEENMLLRHGENDFSV 190
Query: 505 DFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNE 564
++ N A + + FINH C PN + + A RDI E
Sbjct: 191 MYSTRKN------CAQLWLGPAAFINHDCRPNCKFVST-----GRDTACVKALRDIEPGE 239
Query: 565 ELSFCYLDLTKAKFTSSKRKKLVRNECRCGSSNCLG 600
E+S Y C C + G
Sbjct: 240 EISCYY------GDGFFGENN---EFCECYTCERRG 266
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3
tail, choromatin organization modifier, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Length = 78
Score = 79.8 bits (197), Expect = 9e-19
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQER 281
YEVE ++D + T YLV+WK YD E +TWEP ++L NC + + +F + ++++
Sbjct: 13 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQK 71
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP:
b.34.13.2
Length = 70
Score = 77.9 bits (192), Expect = 4e-18
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 217 SSDTMTEYEVESVLDS-LELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
SS EYEVE ++D L+ + +Y ++W NY +TWEP ENL C+ LAE+ +
Sbjct: 2 SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61
Query: 276 GPDQERTD 283
+ ++
Sbjct: 62 KRRLKGSN 69
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 77.4 bits (191), Expect = 5e-18
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQER 281
+EVE +LD + +Y V+WK Y + +TWEP +L +C + L EF K + +
Sbjct: 4 VFEVEKILDM-KTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENKA 61
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 75.8 bits (187), Expect = 2e-17
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
YEVE +L + + Y +KW YD NTWEP +NL K L ++ K
Sbjct: 7 VYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLKKWKK 58
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 84.5 bits (208), Expect = 4e-17
Identities = 65/437 (14%), Positives = 133/437 (30%), Gaps = 105/437 (24%)
Query: 9 LRRKGENGE---LTTLIEPN----ADEVHRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFL 61
L K E + ++ N + + ++ +D Y + +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129
Query: 62 HGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMD-F--TYIPSSVPRDGVVV 118
+ R Q +R+A L N ++ + T++ V V
Sbjct: 130 NVSRLQPYLKLRQA----------LLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQ 177
Query: 119 T--DDPVIW-----CECRGNCVSNRDACCSDLN-------DADFAYSRRTKRLKLEKGTP 164
D + W C + ++ D R ++ E
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 165 IYECNKKCAC----DETCLNRVVQKGNLVQDCHTTITSRDGSVV----LLRVADINLTKF 216
+ C + NL C +T+R V I+L
Sbjct: 238 LKS-KPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 217 SSDTMTEYEVESVL------DSLEL------TSDMTVYLVKWKNYDPEYNTWEPIENLGN 264
S T+T EV+S+L +L T+ + ++ ++ TW+ +++
Sbjct: 295 -SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVNC 352
Query: 265 CAKKLAEFLKAG-----PDQERTDFEKMKSF----------LS----QHTEEEVESVLAK 305
KL +++ P + R F+++ F LS + +V V+ K
Sbjct: 353 --DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 306 LRNK-------KDFAYA-HMLLLTHFLHGKRKQQL-ANIREAEERYNAACETAARLTLEN 356
L K+ + + L + + + L +I + YN T ++
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYN------IPKTFDS 461
Query: 357 NFDLESPPMD---FTYI 370
+ DL P +D +++I
Sbjct: 462 D-DLIPPYLDQYFYSHI 477
Score = 69.5 bits (169), Expect = 2e-12
Identities = 100/649 (15%), Positives = 184/649 (28%), Gaps = 150/649 (23%)
Query: 4 FKTNSLRRKGENGELTTLIEPN--ADEVHRTVSRFLFNRKLLSSAKDFAYAHMLLLTHFL 61
F+T + + ++ ++ E + + V + +LS + H+++ +
Sbjct: 9 FETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEE---IDHIIMSKDAV 61
Query: 62 HGKRKQQLANI--REAEERYNAACETAARLTLENNFD---------LESPPMD---FTYI 107
G + L + EE E L N+ P M +
Sbjct: 62 SGTLR--LFWTLLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 108 PSSVPRDGVVVTDDPVIWCECRGNCVSN-RDACCSDLNDADFAYSRRTKRLKLE--KGTP 164
+ D V V R R A R K + ++ G
Sbjct: 116 RDRLYNDNQVFAKYNV----SRLQPYLKLRQALLEL---------RPAKNVLIDGVLG-- 160
Query: 165 IYECNKKCACDETCLNRVVQKGNL-------VQDCHTTITSRDGSVVLLRVADINLTKFS 217
K + CL+ VQ +++C++ T + LL D N T S
Sbjct: 161 ---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 218 SDTMT-EYEVESVLDSLELTSDMTVYLVKWKNY-------DPEYNTWEP--IE--NLGNC 265
+ + + S+ L L+K K Y N NL C
Sbjct: 218 DHSSNIKLRIHSIQAELR-------RLLKSKPYENCLLVLL---NVQNAKAWNAFNLS-C 266
Query: 266 -------AKKLAEFLKAGPDQERTDFEKMKSFLSQHTEEEVESVLAKLRNKKDFAYAHML 318
K++ +FL A + + T +EV+S+L K + + +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTL----TPDEVKSLLLKYLDCRPQDLPREV 322
Query: 319 LLTHFLH----GKRKQQLANIREAEERYNA-ACETAARLTLENNFDLESPPMDFTYIPSS 373
L T+ + + + + N T +L LE + S
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLS 379
Query: 374 VPRDGVVVTDD--PVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYEC 431
V + +IW + + V + + ++ K + I
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTIS----IPSI 431
Query: 432 --NKKCACD-ETCLNR-VVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEIL 487
K + E L+R +V I KT ++ D+ + ++G
Sbjct: 432 YLELKVKLENEYALHRSIVDH-----YNIPKTFDSDDLIPPYLDQ-----YFYSHIGH-- 479
Query: 488 THENALQRTNQTYCFN---LDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEVSRINN 544
H ++ + F LDF F L+ I H I N
Sbjct: 480 -HLKNIEHPERMTLFRMVFLDFR-------F-LEQK--------IRHDSTAWNASGSILN 522
Query: 545 LNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRC 593
L F K I N+ ++ F + L+ ++
Sbjct: 523 TLQQLK----FYKPYICDNDPKYERLVNAIL-DFLPKIEENLICSKYTD 566
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 79.7 bits (196), Expect = 7e-17
Identities = 32/202 (15%), Positives = 55/202 (27%), Gaps = 24/202 (11%)
Query: 407 NDADFAYSRRTK----RLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNN 462
D + AY T + P E K + + G T+ +
Sbjct: 58 RDLEAAYRALTLGGWTARYFQSRGPRQEAALKTHVYRYLRAFLPESGFTILPCTRYSMET 117
Query: 463 RGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNSVAFVLDAARY 522
G + + K + VG I A + + + + A +
Sbjct: 118 NGAKIVSTRAWKKNEKLELLVGCIAELREADEGLLRAGENDFSIMYSTRKR----SAQLW 173
Query: 523 GNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSK 582
+ FINH C PN + D + + RDI +E++ Y
Sbjct: 174 LGPAAFINHDCKPNCKFVPA-----DGNAACVKVLRDIEPGDEVTCFY---------GEG 219
Query: 583 RKKLVRNECRCGS--SNCLGYY 602
C C + G +
Sbjct: 220 FFGEKNEHCECHTCERKGEGAF 241
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 76.9 bits (189), Expect = 9e-17
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 15/140 (10%)
Query: 437 CDETCLNRVVQKGITLP--LTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQ 494
D +R +LP L + ++ GV T + I T +G+ +
Sbjct: 9 PDTPIESRARL---SLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAE 65
Query: 495 RTNQTYCFNLDFNQDSNSVAFV-LDAARYGNVSHFINHSCDP---NLEVSRINNLNPDLH 550
T++ + + N F+ + + NL +
Sbjct: 66 WTDKAVNHIWKIYHNGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDG------ 119
Query: 551 HVALFAKRDINKNEELSFCY 570
+ +DI EL F Y
Sbjct: 120 KIFFCTSQDIPPENELLFYY 139
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 75.1 bits (184), Expect = 3e-16
Identities = 26/128 (20%), Positives = 40/128 (31%), Gaps = 16/128 (12%)
Query: 451 TLP--LTIFKTK-NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFN 507
LP + +F + + GV I G +VG+ Q N Y + + +
Sbjct: 26 GLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRS---QVKNNVYMWEVYYP 82
Query: 508 QDSNSVAFVLDAARYGNVSHFINHSCDP---NLEVSRINNLNPDLHHVALFAKRDINKNE 564
D GN ++N +C NL IN + + I E
Sbjct: 83 NLGWMCIDATD-PEKGNWLRYVNWACSGEEQNLFPLEINR------AIYYKTLKPIAPGE 135
Query: 565 ELSFCYLD 572
EL Y
Sbjct: 136 ELLVWYNG 143
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural
GENO structural genomics consortium, SGC, centromere,
nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Length = 59
Score = 70.0 bits (172), Expect = 2e-15
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQE 280
EY VE VLD + YL+KWK + E+NTWEP +NL +C + ++EF+K +
Sbjct: 3 EYVVEKVLDR-RVVKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKYKKMK 58
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 72.8 bits (178), Expect = 3e-15
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 450 ITLP--LTIFKTK-NNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDF 506
+ LP + I ++ G G+ + IKAGT + + G ++ E+ N + +
Sbjct: 23 LVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIAPEHVDICKNNNLMWEVFN 82
Query: 507 NQDSNSVAFVLDAARYGNVSHFINHSCDP---NLEVSRINNLNPDLHHVALFAKRDINKN 563
+ + + +I + + NLEV +I + A I +
Sbjct: 83 EDGTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQIGT------SIFYKAIEMIPPD 136
Query: 564 EELSFCYLD 572
+EL Y +
Sbjct: 137 QELLVWYGN 145
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif,
alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB:
1guw_A*
Length = 73
Score = 68.3 bits (167), Expect = 1e-14
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 215 KFSSDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+ + EY VE VLD + YL+KWK + E NTWEP ENL +C +AEFL+
Sbjct: 5 EVLEEEEEEYVVEKVLDR-RVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQ 62
Query: 275 AGPDQERTD 283
+ TD
Sbjct: 63 SQKTAHETD 71
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 71.3 bits (174), Expect = 2e-14
Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 16/149 (10%)
Query: 430 ECNKKCACDETCLNRVVQKGITLP--LTIFKTKN-NRGWGVRTPDKIKAGTFVCEYVGEI 486
+ D + +LP L N GV + + I GT +GEI
Sbjct: 37 DHPWDSGADGGTSVQAEA---SLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEI 93
Query: 487 LTHENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDP---NLEVSRIN 543
T++ + N+ Y + +++ N ++N + P NL +
Sbjct: 94 YTNDTVPKNANRKYFWR-IYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQNG 152
Query: 544 NLNPDLHHVALFAKRDINKNEELSFCYLD 572
++ + + I N+EL Y
Sbjct: 153 M------NIYFYTIKPIPANQELLVWYCR 175
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1,
structural genomics, struct genomics consortium, SGC,
centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A*
2l11_A* 3dm1_A*
Length = 55
Score = 66.9 bits (164), Expect = 2e-14
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
EY VE VLD + YL+KWK + E NTWEP ENL +C +AEFL+
Sbjct: 2 EYVVEKVLDR-RVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQ 51
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin,
methyllysine, monomethyllysine, structural protein; HET:
MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2
PDB: 1kne_A* 1kna_A*
Length = 69
Score = 66.7 bits (163), Expect = 3e-14
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 214 TKFSSDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFL 273
+ + EY VE ++D + M Y +KWK Y NTWEP NL +C + ++
Sbjct: 7 HHHAEEEEEEYAVEKIIDR-RVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYE 64
Query: 274 KAGPD 278
+ D
Sbjct: 65 ASRKD 69
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone
methyltransferase, histone-lysine N-methyltransferas
SUV39H1, histone H3, TRI-methylation; 2.20A {Homo
sapiens}
Length = 64
Score = 65.1 bits (159), Expect = 9e-14
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQERTDF 284
EVE + D + + YLVKW+ Y +TWEP +NL C + L +F K +
Sbjct: 2 EVEYLCDY-KKIREQEYYLVKWRGYPDSESTWEPRQNL-KCVRILKQFHKDLERELLRRH 59
Query: 285 EKMKS 289
+ K+
Sbjct: 60 HRSKT 64
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail,
choromatin organization modifier, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Length = 64
Score = 65.1 bits (159), Expect = 9e-14
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 218 SDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
S + E++L + YLVKWK + +Y+TWEP EN+ A+ LA F
Sbjct: 5 SSGERVFAAEALLKR-RIRKGRMEYLVKWKGWSQKYSTWEPEENI-LDARLLAAFESG 60
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin
regulator, nucleus, repressor, transcription,
transcription regulation; NMR {Homo sapiens} PDB:
2l12_A* 2l1b_A*
Length = 73
Score = 65.2 bits (159), Expect = 1e-13
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 215 KFSSDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+ VES+ + YLVKWK + P+Y+TWEP E++ + + + +
Sbjct: 13 NLYFQGEQVFAVESIRKK-RVRKGKVEYLVKWKGWPPKYSTWEPEEHI-LDPRLVMAYEE 70
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2,
chromo domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 74
Score = 65.2 bits (159), Expect = 1e-13
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 217 SSDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAG 276
S + E +L L YLVKW+ + ++N+WEP EN+ + L F K
Sbjct: 4 GSSGEQVFAAECILSK-RLRKGKLEYLVKWRGWSSKHNSWEPEENI-LDPRLLLAFQKKE 61
Query: 277 PDQERTDFEK 286
++E +
Sbjct: 62 HEKEVQNSGP 71
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2,
structural genomics, structural genomics consortium,
SGC, chromatin regulator, D binding, nucleus; HET: M3L;
1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A
Length = 54
Score = 63.8 bits (156), Expect = 2e-13
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+ E +L L YLVKW+ + ++N+WEP EN+ + L F K
Sbjct: 3 VFAAECILSK-RLRKGKLEYLVKWRGWSSKHNSWEPEENI-LDPRLLLAFQK 52
>2kvm_A Chromobox protein homolog 7; histone modification, lysine
methylation, chromobox, polycom chromatin-binding; HET:
MLY; NMR {Mus musculus}
Length = 74
Score = 64.4 bits (157), Expect = 2e-13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQERT 282
+ VES+ + YLVKWK + P+Y+TWEP E++ + + + + +
Sbjct: 13 VFAVESIRKK-RVRKGKVEYLVKWKGWPPKYSTWEPEEHI-LDPRLVMAYEEKEERDRAS 70
Query: 283 DFEK 286
+ K
Sbjct: 71 GYRK 74
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine
methylation, trimethyllysine, cation-PI, chromo,
structural protein; HET: M3L; 1.76A {Drosophila
melanogaster} SCOP: b.34.13.2
Length = 72
Score = 63.2 bits (154), Expect = 6e-13
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 217 SSDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
Y E ++ + + Y VKWK ++ YNTWEP N+ + + + +
Sbjct: 14 DDPVDLVYAAEKIIQK-RVKKGVVEYRVKWKGWNQRYNTWEPEVNI-LDRRLIDIYEQ 69
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural
genomics structural genomics consortium, SGC, chromatin
regulator, N phosphoprotein, repressor; HET: M3L; 1.55A
{Homo sapiens} PDB: 3gv6_A* 3i90_A*
Length = 54
Score = 62.0 bits (151), Expect = 1e-12
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+ E++L + YLVKWK + +Y+TWEP EN+ A+ LA F +
Sbjct: 3 VFAAEALLKR-RIRKGRMEYLVKWKGWSQKYSTWEPEENI-LDARLLAAFEE 52
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb,
chromodomain, peptide binding protein; HET: M3L; 1.40A
{Drosophila melanogaster} SCOP: b.34.13.2
Length = 55
Score = 60.8 bits (148), Expect = 3e-12
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
Y E ++ + + Y VKWK ++ YNTWEP N+ + + + +
Sbjct: 3 VYAAEKIIQK-RVKKGVVEYRVKWKGWNQRYNTWEPEVNI-LDRRLIDIYEQ 52
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 53.5 bits (128), Expect = 1e-08
Identities = 22/144 (15%), Positives = 43/144 (29%), Gaps = 20/144 (13%)
Query: 437 CDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRT 496
+ L R +LPL + + GV + +I T G ++ L+
Sbjct: 9 PNRPVLTRARA---SLPLVL--YIDRFLGGVFSKRRIPKRTQFGPVEGPLVRGS-ELKDC 62
Query: 497 NQTYCFNLDFNQD---SNSVAFVLDAAR--YGNVSHFINHSCDP---NLEVSRINNLNPD 548
+LD + + N F+ + + NL + +
Sbjct: 63 YIHLKVSLDKGDRKERDLHEDLWFELSDETLCNWMMFVRPAQNHLEQNLVAYQYGH---- 118
Query: 549 LHHVALFAKRDINKNEELSFCYLD 572
HV +++ +EL Y
Sbjct: 119 --HVYYTTIKNVEPKQELKVWYAA 140
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 52.9 bits (126), Expect = 6e-08
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 20/146 (13%)
Query: 451 TLP--LTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQ 508
T+P + + K + + I G Y G+I T + + +
Sbjct: 69 TIPQGMEVVKDTSGESDVRCVNEVIPKGHIFGPYEGQISTQDKSAGFFSWLIVDK----- 123
Query: 509 DSNSVAFVLDAA--RYGNVSHFINHSCDP---NLEVSRINNLNPDLHHVALFAKRDINKN 563
N+ +D + N ++ S + NL + + + A RDI
Sbjct: 124 --NNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSE------RIYFRACRDIRPG 175
Query: 564 EELSFCYLDLTKAKFTSSKRKKLVRN 589
E L Y + + S ++ + RN
Sbjct: 176 EWLRVWYSEDYMKRLHSMSQETIHRN 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 50.7 bits (120), Expect = 1e-06
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 528 FINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLV 587
+NHSCDPN + H+ L A RDI EEL+ CYLD+ + +RK+L
Sbjct: 204 LLNHSCDPNCSIVFNGP------HLLLRAVRDIEVGEELTICYLDMLMT--SEERRKQLR 255
Query: 588 RN---ECRC 593
EC C
Sbjct: 256 DQYCFECDC 264
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 49.1 bits (116), Expect = 3e-06
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 528 FINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLV 587
+NHSC PN+ V+ + A ++I+ +E+ Y+DL T + +L
Sbjct: 204 LMNHSCCPNVIVTYKGT------LAEVRAVQEIHPGDEVFTSYIDLLYP--TEDRNDRLR 255
Query: 588 RN---ECRC 593
+ C C
Sbjct: 256 DSYFFTCEC 264
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 48.0 bits (113), Expect = 5e-06
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 22/125 (17%)
Query: 480 CEYVGEILTHENALQRTNQTYCFNLDFNQDSNSVAFVLDAARYGNVSHFINHSCDPNLEV 539
++ + ++H + N F L + +V + + N+ NH C PN V
Sbjct: 163 QQFSMQYISHIFGVINCN---GFTLSDQRGLQAVGVGI----FPNLGLV-NHDCWPNCTV 214
Query: 540 S-------RINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRN--- 589
+ ++ + L A I++ EEL+ Y+D S +R++ ++
Sbjct: 215 IFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLH---LSEERRRQLKKQYY 271
Query: 590 -ECRC 593
+C C
Sbjct: 272 FDCSC 276
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded
antiparallel beta sheet, alpha helix linker, peptide
binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2
PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Length = 115
Score = 44.3 bits (104), Expect = 9e-06
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
Query: 242 YLVKWKNYDPEYNTWEPIENLGNCA----KKLAEFLKAGPDQERTDFEKMKSFLSQHTEE 297
YL+KWK + +NTWE E L KKL + K + +R +L + E
Sbjct: 60 YLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKR--------WLKNASPE 111
Query: 298 EVE 300
+VE
Sbjct: 112 DVE 114
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein
translocation, unknown function; NMR {Arabidopsis
thaliana} SCOP: b.34.13.2
Length = 54
Score = 41.2 bits (96), Expect = 2e-05
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 226 VESVLDSLELTSDMTV-YLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQE 280
ESV+ T+ YLVKW D TWEP +N+ + + + + P E
Sbjct: 3 AESVIGKRVGDDGKTIEYLVKWT--DMSDATWEPQDNVD--STLVLLYQQQQPMNE 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 73/434 (16%), Positives = 124/434 (28%), Gaps = 143/434 (32%)
Query: 205 LLRVADINLTKFSSDTMTEYEVESVLDSLELTSDMTVYLVKW--KNYDPEYN----TWEP 258
+L + LT+F + + ++ ++ L +D T+ K KNY P
Sbjct: 83 VLNLC---LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY---ITARIMAKRP 136
Query: 259 IENLGNCAKKLAEFLKAGPDQERTDFEKMKSFLSQ-HTE---EEVESVLAKLRNKKDFAY 314
+ N A +A + + + F Q +T+ EE L L Y
Sbjct: 137 FDKKSNSA-----LFRAVGEGN---AQLVAIFGGQGNTDDYFEE----LRDLYQ----TY 180
Query: 315 AHMLLLTHFLH--GKRKQQLANIREAEERYNAACETAARLTLENNFDLES--------PP 364
L+ + + +L E+ ++ P
Sbjct: 181 HV--LVGDLIKFSAETLSELIRTTLDAEKV-----------FTQGLNILEWLENPSNTPD 227
Query: 365 MDF-TYIPSSVPRDGVV------VTDDPVIWCECRGNCVSN-RD------ACCSDL---- 406
D+ IP S P GV+ VT + G R L
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVT------AKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 407 ------NDADFAYSRRTKRLKL--EKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFK 458
+ F + K + + G C E N +LP +I +
Sbjct: 282 AIAETDSWESF-FVSVRKAITVLFFIG---------VRCYEAYPN------TSLPPSILE 325
Query: 459 TKNNRGWGVRTP-------DKIKAGTFVCEYVGEILTHENA-LQRTNQTYCFNLDFNQDS 510
GV +P + E V + + N+ L Q +L N
Sbjct: 326 DSLENNEGVPSPMLSISNLTQ--------EQVQDYVNKTNSHLPAGKQVE-ISL-VNGAK 375
Query: 511 NSVAFVLD---AARYGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELS 567
N V+ + YG L+ SRI P F++R + + S
Sbjct: 376 N---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI----P-------FSERKL----KFS 417
Query: 568 FCYLDLTKAKFTSS 581
+L + + F S
Sbjct: 418 NRFLPVA-SPFHSH 430
Score = 45.4 bits (107), Expect = 5e-05
Identities = 70/529 (13%), Positives = 139/529 (26%), Gaps = 189/529 (35%)
Query: 1 MKAFKTNSLRRKGEN-----GELTTLIEPNADEVHRTV-----SRFLFNRK--------L 42
+ F+ L G + +L + + + +R + R L
Sbjct: 88 LTEFENCYLE--GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 43 LSSAKD-----FA---------------------YAHMLLLTHFLH--GKRKQQLANIRE 74
+ + A Y L+ + + +L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV--LVGDLIKFSAETLSELIRTTL 203
Query: 75 AEERYNAACETAARLTLENNFDLES--------PPMDF-TYIPSSVPRDGVV------VT 119
E+ ++ P D+ IP S P GV+ VT
Sbjct: 204 DAEKV-----------FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 120 DDPVIWCECRGNCVSN-RD------ACCSDL----------NDADFAYSRRTKRLKL--E 160
+ G R L + F + K + +
Sbjct: 253 ------AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFF 305
Query: 161 KGTPIYECNKKCACDETCLNRVVQKGNLVQDCHTTITSRDGSVV-LLRVADINLTKFSSD 219
G C E ++++D + + +G +L ++++
Sbjct: 306 IG---------VRCYEA-YPNTSLPPSILEDS---LENNEGVPSPMLSISNLTQE----- 347
Query: 220 TMTEYEVESVLD----SLELTSDMTVYLVKWKNYDPEYNTWE------PIENLGNCAKKL 269
+V+ ++ L + + LV N + P ++L L
Sbjct: 348 -----QVQDYVNKTNSHLPAGKQVEISLV---------NGAKNLVVSGPPQSLYGLNLTL 393
Query: 270 AEFLKA--GPDQERTDFEKMK-----SFL-------SQHTEEEVESVLAKLRNKKDFAY- 314
+ KA G DQ R F + K FL S + + L K + ++
Sbjct: 394 RK-AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV-KNNVSFN 451
Query: 315 AHMLLLT--HFLHGKRKQQLANIREAEERYNAA-CETAARLTLENNFDLESPPMDFTYI- 370
A + + G ++R + + RL + ++ + T+I
Sbjct: 452 AKDIQIPVYDTFDGS------DLRVLSGSISERIVDCIIRLPV--KWE-TTTQFKATHIL 502
Query: 371 ---PSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSDLN---DADFAY 413
P GV+ + G V R L+ D D+ +
Sbjct: 503 DFGPGGASGLGVLTHRN------KDGTGV--RVIVAGTLDINPDDDYGF 543
Score = 31.2 bits (70), Expect = 1.3
Identities = 31/191 (16%), Positives = 48/191 (25%), Gaps = 94/191 (49%)
Query: 365 MDFTYIPSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRT------- 417
MD Y S +D +W N AD + + T
Sbjct: 1633 MDL-YKTSKAAQD---------VW------------------NRAD-NHFKDTYGFSILD 1663
Query: 418 ------KRLKL----EKGTPIYECN-----KKCACDETCLNRVVQKGITLPLT--IF--- 457
L + EKG I E N + D + K I T F
Sbjct: 1664 IVINNPVNLTIHFGGEKGKRIRE-NYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 458 -----KTKNN---------------RGWGVRTPDKIKAGTFVC----EY-----VGEILT 488
T+ + G+ D AG EY + ++++
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG----HSLGEYAALASLADVMS 1778
Query: 489 HENAL----QR 495
E+ + R
Sbjct: 1779 IESLVEVVFYR 1789
Score = 30.8 bits (69), Expect = 1.7
Identities = 48/282 (17%), Positives = 86/282 (30%), Gaps = 97/282 (34%)
Query: 219 DTMTEYEVE----SVLD-SLELTSDMTVYLVKWK------NYDPEYNTWEPIENLGNCAK 267
+ + + S+LD + ++T++ K NY +E I + +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA--MIFETIVDGKLKTE 1704
Query: 268 KLAEFLKAGPDQERTDFEKMKSFLSQHTE--------EEVESVLAKLRNK----KDFAYA 315
K+ F + F K LS T+ E + L++K D +A
Sbjct: 1705 KI--FKEINEHSTSYTFRSEKGLLSA-TQFTQPALTLMEK-AAFEDLKSKGLIPADATFA 1760
Query: 316 -HMLLLTHFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDL-----ESPPMDFTY 369
H L G E Y A A +++E+ ++
Sbjct: 1761 GHSL-------G-------------E-YAALASLADVMSIESLVEVVFYRGM-------T 1792
Query: 370 IPSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDADFAY-----SRRTKRLKLEK 424
+ +VPRD + ++ +I N + + Y +RT L +E
Sbjct: 1793 MQVAVPRDELGRSNYGMIAI--------NPGRVAASFSQEALQYVVERVGKRTGWL-VE- 1842
Query: 425 GTPI--YECN----------KKCACDE--TCLNRVVQKGITL 452
I Y N A D LN + + I +
Sbjct: 1843 ---IVNY--NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 38.0 bits (88), Expect = 5e-04
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 223 EY-EVESVLDSLELTSD-----MTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
+Y EV+ +L+ +T YLVKW + E +TWE E++ K+ EF
Sbjct: 10 DYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELEEDVDPA--KVKEFES 65
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP-
dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa
protein, MI2-beta; NMR {Homo sapiens}
Length = 64
Score = 36.4 bits (84), Expect = 0.002
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 225 EVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIE 260
+ +L+ YL+KW++ + +WE +
Sbjct: 13 MIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESED 48
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded
antiparallel beta sheet, alpha helix linker, peptide
binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2
b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Length = 187
Score = 33.8 bits (76), Expect = 0.077
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 242 YLVKWKNYDPEYNTWEPIENL----GNCAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEE 297
YL+KWK + +NTWE E L KKL + K + +R + + +
Sbjct: 60 YLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQ 119
Query: 298 E 298
+
Sbjct: 120 Q 120
Score = 33.8 bits (76), Expect = 0.089
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 3/72 (4%)
Query: 206 LRVADINLTKFSSDTMTEYEVESVLDSLELTSDMTV--YLVKWKNYDPEYNTWEPIENLG 263
+ + V ++ S Y KW+ +WE +
Sbjct: 113 VEYYNCQQELTDDLHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIS 172
Query: 264 NCAKKL-AEFLK 274
+ E+
Sbjct: 173 KKFQACIDEYFS 184
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 34.7 bits (80), Expect = 0.10
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 222 TEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNC--AKKLAEFLK----- 274
+E + L + +L+KW + +NTWE E++G K+L + K
Sbjct: 54 EGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE 113
Query: 275 ----------AGPDQERTDFEKMKSFLSQHTEEEVESVLAKLRNKKDFAY 314
D E D E+ + E ++ R +
Sbjct: 114 DQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGT 163
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded
ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae}
PDB: 2dy7_A 2dy8_A
Length = 177
Score = 33.0 bits (74), Expect = 0.13
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 210 DINLTKFSSDTMTEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKL 269
+ L +F + E ++S SLE + YLVKW+ + + TWE ++ A +
Sbjct: 111 ERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQ 170
Score = 32.7 bits (73), Expect = 0.19
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 222 TEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCA--KKLAEFLKAGPDQ 279
+E + L + +L+KW + +NTWE E++G K+L + K +
Sbjct: 29 EGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIE 88
Query: 280 E 280
+
Sbjct: 89 D 89
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
{Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
2c08_A
Length = 256
Score = 31.3 bits (70), Expect = 0.68
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 257 EPIENLGNCAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEEEVESVLAKLRNKKDFAYAH 316
+P++NL + + + + R DF K + +EE+ L K K+ A +
Sbjct: 141 DPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESS 200
Query: 317 M--LLLTHFLHGKRKQQLANIREAEERY 342
M LL QL+ + +A+ Y
Sbjct: 201 MFNLLEMDIEQ---VSQLSALVQAQLEY 225
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 31.4 bits (72), Expect = 0.87
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 453 PLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVG 484
+ F +NN GV+T G V
Sbjct: 171 EVKGFLIENNEIKGVKTNK----GIIKTGIVV 198
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.94
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 30/98 (30%)
Query: 217 SSDTMTEYEVESVLDSLELTSDMTVYLVKWK-NYDPEYNTWEPIENLGNCAKKLAEFLKA 275
+D +T+ E ES+ KW+ ++ L +K + + +
Sbjct: 76 QADRLTQ-EPESI--------------RKWREEQRKR------LQELDAASKVMEQEWRE 114
Query: 276 GPDQERTDFEKMKSFLSQHTEEEVESVLAKLRNK-KDF 312
++ ++ + E+VE R K F
Sbjct: 115 KAKKDLEEWNQ-------RQSEQVEKNKINNRIADKAF 145
Score = 29.4 bits (65), Expect = 2.3
Identities = 10/80 (12%), Positives = 27/80 (33%), Gaps = 21/80 (26%)
Query: 275 AGPDQERTDFEKMKSF-------LSQHTEEEVESVLAKLRNK-----KDFAYAHMLLLTH 322
A D+ + E ++ + L + + + + R K +++
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEW-NQ------R 126
Query: 323 FLHGKRKQQLANIREAEERY 342
K ++ N R A++ +
Sbjct: 127 QSEQVEKNKINN-RIADKAF 145
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 31.1 bits (71), Expect = 1.0
Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 459 TKNNRGWGVRTPDKIKAGTFVCEYV 483
+ + W VR G++ +
Sbjct: 181 RRVDGAWEVRCDA----GSYRAAVL 201
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
splicing, coiled coil, SH3 domain, endocytosis,
structural genomics, NPPSFA; 2.49A {Homo sapiens}
Length = 240
Score = 30.9 bits (69), Expect = 1.1
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 257 EPIENLGNCAKKLAEFLKAGPDQERTDFEKMKSFLSQHTEEEVESVLAKLRNKKDFAYAH 316
+P++ L + K + R D++ K + + +EEV + K K+ A
Sbjct: 125 DPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERS 184
Query: 317 MLLLTHFLHGKRKQQLANIREAEERY 342
M ++ QLA EA Y
Sbjct: 185 MFNFLE-NDVEQVSQLAVFIEAALDY 209
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.1
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 27/47 (57%)
Query: 66 KQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVP 112
KQ +++ + A L L Y S P
Sbjct: 19 KQA---LKKLQ----------ASLKL--------------YADDSAP 38
Score = 30.3 bits (67), Expect = 1.1
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 27/47 (57%)
Query: 329 KQQLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVP 375
KQ +++ + A L L Y S P
Sbjct: 19 KQA---LKKLQ----------ASLKL--------------YADDSAP 38
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 30.3 bits (67), Expect = 2.3
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 126 CECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNR 181
C C C S CC D ++ +R + K G C C E CL+R
Sbjct: 38 CRCDNLCKSYSS-CCHDFDELCLKTARGWECTKDRCGEV-RNEENACHCSEDCLSR 91
Score = 30.3 bits (67), Expect = 2.3
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 389 CECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETCLNR 444
C C C S CC D ++ +R + K G C C E CL+R
Sbjct: 38 CRCDNLCKSYSS-CCHDFDELCLKTARGWECTKDRCGEV-RNEENACHCSEDCLSR 91
>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin,
cell inner membrane, cell membrane, membrane, rotamase,
stress response; NMR {Escherichia coli}
Length = 102
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 295 TEEEVESVLAKLRNKKDFA 313
TE+E ++VL +L DFA
Sbjct: 15 TEDEAKAVLDELNKGGDFA 33
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 30.1 bits (68), Expect = 2.6
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 453 PLTIFKTKNNRGWGVRTPDKIKAGTFVCEYV 483
+T + R GV+T D G + V
Sbjct: 173 TVTGIEQSGGRVTGVQTAD----GVIPADIV 199
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 29.8 bits (66), Expect = 2.7
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 528 FINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLDLTKAKFT 579
NH+ N + A +D E++ Y + A+F
Sbjct: 275 MCNHTNGLI-----TTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFV 321
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 29.8 bits (66), Expect = 2.8
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 525 VSHFINHSCDPNL-----EVSRINNLNPDLHHVALFAKRDINKNEELSFCY 570
++ INHS EV L + +L + + E++ Y
Sbjct: 189 MADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 239
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 29.2 bits (66), Expect = 2.9
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 280 ERTDFEKMKSFLSQHTEEEVESVLAKLRNKKDFAYAHMLLLTHF--LHGKRKQQLANIRE 337
+R D EK + L T + + + + + + + HG + N E
Sbjct: 3 KREDLEKKQQLLRAATGKAILNGIDSINKVLEHFRRKGINQHVQNGYHG----IVMNNFE 58
Query: 338 AEERYNAACETAA 350
E + E A
Sbjct: 59 CEPAFYTCVEVTA 71
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR
{Bacillus subtilis}
Length = 93
Score = 27.5 bits (62), Expect = 3.5
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 295 TEEEVESVLAKLRNKKDFA 313
++ E V KL+ + F
Sbjct: 14 DKKTAEEVEKKLKKGEKFE 32
>4a5v_A MIC4, micronemal protein 4; adhesion; NMR {Toxoplasma gondii}
Length = 161
Score = 28.0 bits (61), Expect = 6.9
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 129 RGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETC 178
+ +C + +Y + + +C CA D +C
Sbjct: 70 LTGGKTASRSCDRSCFEQHVSYEGAPDVMTAMVTSQSADCQAACAADPSC 119
Score = 28.0 bits (61), Expect = 6.9
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 392 RGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGTPIYECNKKCACDETC 441
+ +C + +Y + + +C CA D +C
Sbjct: 70 LTGGKTASRSCDRSCFEQHVSYEGAPDVMTAMVTSQSADCQAACAADPSC 119
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 28.5 bits (64), Expect = 7.1
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 259 IENLGNCAKKLAEFLKAGPDQE------RTDFEKMKSFLSQHTEEEVESVLAKLRNKKDF 312
++ K+ +FL+ G E+M+ + +E+ R K
Sbjct: 185 RKDPEGELWKVVDFLELGGRDGVADAVANCTLERMREMEERSKLLGLETTGLMTRGGKQL 244
Query: 313 AY 314
+
Sbjct: 245 PF 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,126,382
Number of extensions: 547260
Number of successful extensions: 1680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1554
Number of HSP's successfully gapped: 93
Length of query: 605
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 506
Effective length of database: 3,937,614
Effective search space: 1992432684
Effective search space used: 1992432684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.6 bits)