RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14657
(605 letters)
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 167 bits (424), Expect = 4e-48
Identities = 84/279 (30%), Positives = 125/279 (44%), Gaps = 39/279 (13%)
Query: 353 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPV-IWCECRGNCVSNRDAC-CSDLNDAD 410
++ N D +F +I S+ V V D + C C + C C D D
Sbjct: 5 SIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPD 64
Query: 411 FAYS-------------------RRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGIT 451
+ L+ PIYEC++ CAC + C NRVV++G T
Sbjct: 65 SDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERGRT 124
Query: 452 LPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ--------TYCFN 503
+PL IF+TK +RGWGV+ P IK G FV Y+GEI+T E A +R + Y F
Sbjct: 125 VPLQIFRTK-DRGWGVKCPVNIKRGQFVDRYLGEIITSEEADRRRAESTIARRKDVYLFA 183
Query: 504 LDFNQDSNSVA-------FVLDAARYGNVSHFINHSCDPNLEV--SRINNLNPDLHHVAL 554
LD D +S+ +D + FINHSCDPN+ + ++ + +H +AL
Sbjct: 184 LDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADKHIHDLAL 243
Query: 555 FAKRDINKNEELSFCYLDLTKAKFTSSKRKKLVRNECRC 593
FA +DI K EL+F Y++ + + + +C
Sbjct: 244 FAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKC 282
Score = 78.8 bits (193), Expect = 8e-17
Identities = 29/118 (24%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 90 TLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPV-IWCECRGNCVSNRDAC-CSDLNDAD 147
++ N D +F +I S+ V V D + C C + C C D D
Sbjct: 5 SIVNREDDAFLNPNFRFIDHSIIGKNVPVADQSFRVGCSCASDEECMYSTCQCLDEMAPD 64
Query: 148 FAYS-------------------RRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
+ L+ PIYEC++ CAC + C NRVV++G
Sbjct: 65 SDEEADPYTRKKRFAYYSQGAKKGLLRDRVLQSQEPIYECHQGCACSKDCPNRVVERG 122
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 165 bits (418), Expect = 2e-47
Identities = 87/233 (37%), Positives = 119/233 (51%), Gaps = 18/233 (7%)
Query: 353 TLENNFDLES-PPMDFTYIPSSVPRDGVVVTDDPV-IWCECRG----NCVSNRDACCSDL 406
TL N D E P +DF +I GV+ D C C + + C D
Sbjct: 30 TLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD 89
Query: 407 NDADFAY-SRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGW 465
D + R++ + G IYECN C+C C NRVVQ+G TLPL IFKTK +GW
Sbjct: 90 LDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTK-EKGW 148
Query: 466 GVRTPDKIKAGTFVCEYVGEILTHENALQRTNQ------TYCFNLDFNQDSNSVAFVLDA 519
GVR+ AGTF+ Y+GE++T A +R TY F+LD D++ + +DA
Sbjct: 149 GVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASE--YTVDA 206
Query: 520 ARYGNVSHFINHSCDPNLEVSRI--NNLNPDLHHVALFAKRDINKNEELSFCY 570
YG+VS F NHSC PN+ + N+ ++ +A FA +DI EEL+F Y
Sbjct: 207 QNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDY 259
Score = 77.5 bits (190), Expect = 2e-16
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 90 TLENNFDLES-PPMDFTYIPSSVPRDGVVVTDDPV-IWCECRG----NCVSNRDACCSDL 143
TL N D E P +DF +I GV+ D C C + + C D
Sbjct: 30 TLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDD 89
Query: 144 NDADFAY-SRRTKRLKLEKGTPIYECNKKCACDETCLNRVVQKG 186
D + R++ + G IYECN C+C C NRVVQ+G
Sbjct: 90 LDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRG 133
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 96.4 bits (239), Expect = 8e-24
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 6/144 (4%)
Query: 430 ECNKKCACDETCLNRVVQKGITLPLTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTH 489
+ C L + + + + G G+ + + T + Y G +TH
Sbjct: 2 KSTSSCISTNALLPDPYES-ERVYVAESLISS-AGEGLFSKVAVGPNTVMSFYNGVRITH 59
Query: 490 ENALQRT--NQTYCFNLDFNQDSNS-VAFVLDAARYGNVSHFINHSCDPNLEVSRINNLN 546
+ R +LD + + + ++ H NHS PN +
Sbjct: 60 QEVDSRDWALNGNTLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVH-P 118
Query: 547 PDLHHVALFAKRDINKNEELSFCY 570
+ R + +EEL+ Y
Sbjct: 119 RFGPIKCIRTLRAVEADEELTVAY 142
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 72.9 bits (179), Expect = 8e-17
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 217 SSDTMTEYEVESVLDS-LELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
SS EYEVE ++D L+ + +Y ++W NY +TWEP ENL C+ LAE+ +
Sbjct: 2 SSPKQEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRR 61
Query: 276 GPDQERTD 283
+ ++
Sbjct: 62 KRRLKGSN 69
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 71.7 bits (176), Expect = 2e-16
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQER 281
YEVE ++D + T YLV+WK YD E +TWEP ++L NC + + +F + ++++
Sbjct: 6 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQK 64
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 72.1 bits (176), Expect = 6e-16
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 17/119 (14%)
Query: 454 LTIFKTKNNRGWGVRTPDKIKAGTFVCEYVGEILTHENALQRTNQTYCFNLDFNQDSNSV 513
+ + K+ G+GV + G V E + + +++ Y F+
Sbjct: 6 VIVKKSPL-GGYGVFARKSFEKGELVEECLCIVRHNDDWGTALE-DYLFSRKN------- 56
Query: 514 AFVLDAARYGNVSHFINHSCDPNLEVSRINNLNPDLHHVALFAKRDINKNEELSFCYLD 572
+A NHS DPN + L L + +F + I EE++ Y D
Sbjct: 57 ----MSAMALGFGAIFNHSKDPNA----RHELTAGLKRMRIFTIKPIAIGEEITISYGD 107
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 52
Score = 64.4 bits (157), Expect = 5e-14
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKA 275
EY VE ++D + M Y +KWK Y NTWEP NL +C + ++ +
Sbjct: 1 EYAVEKIIDR-RVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEAS 51
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus
musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 73
Score = 63.7 bits (155), Expect = 1e-13
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQERT 282
EY VE VLD + YL+KWK + E NTWEP ENL +C +AEFL++ T
Sbjct: 13 EYVVEKVLDR-RVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQKTAHET 70
Query: 283 D 283
D
Sbjct: 71 D 71
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 61.7 bits (150), Expect = 4e-13
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEF 272
+ E++L + YLVKWK + +Y+TWEP EN+ A+ LA F
Sbjct: 4 VFAAEALLKR-RIRKGRMEYLVKWKGWSQKYSTWEPEENI-LDARLLAAF 51
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 55
Score = 58.6 bits (142), Expect = 6e-12
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 223 EYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLK 274
Y E ++ + + Y VKWK ++ YNTWEP N+ + + + +
Sbjct: 3 VYAAEKIIQK-RVKKGVVEYRVKWKGWNQRYNTWEPEVNI-LDRRLIDIYEQ 52
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 57.2 bits (138), Expect = 3e-11
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 222 TEYEVESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNCA--KKLAEFLK 274
+ ++V D + +L+KW + +NTWE E++G K+L + K
Sbjct: 23 GKVLEKTVPDL-NNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCK 76
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 56.4 bits (136), Expect = 4e-11
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 223 EYEVESVLDSLELTSD----MTVYLVKWKNYDPEYNTWEPIENLG-NCAKKLAEFLK 274
+ E ++DS + + YLVKW+ + + TWE ++ +++ F
Sbjct: 6 FHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQN 62
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 54.5 bits (131), Expect = 3e-10
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 223 EYEVESVLDSLELTSDMTV--YLVKWKNYDPEYNTWEPIENLGN-CAKKLAEFLK 274
V ++ S Y KW+ +WE + + E+
Sbjct: 23 YQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFS 77
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 54
Score = 44.7 bits (106), Expect = 5e-07
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 226 VESVLDSLELTSDMTV-YLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAGPDQE 280
ESV+ T+ YLVKW + TWEP +N+ + + + + P E
Sbjct: 3 AESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVDS--TLVLLYQQQQPMNE 54
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 45.7 bits (108), Expect = 5e-07
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 222 TEYEVESVLDSLE-----LTSDMTVYLVKWKNYDPEYNTWEPIENLGNCAKKLAEFLKAG 276
T Y VE+ D YL+KWK + +NTWE E L + + L
Sbjct: 23 TIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNY 82
Query: 277 PDQERTDFEKMKS 289
+++ +K+
Sbjct: 83 KKKDQETKRWLKN 95
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15
{Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 31.0 bits (70), Expect = 0.074
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 242 YLVKWKNYDPEYNTWEPIENL 262
Y + + ++ ++ W P +
Sbjct: 37 YFIHYSGWNKNWDEWVPESRV 57
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 32.3 bits (72), Expect = 0.14
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 528 FINHSCDPNL-----EVSRINNLNPDLHHVALFAKRDINKNEELSFCY 570
INHS EV L + +L + + E++ Y
Sbjct: 191 LINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia
coli [TaxId: 562]}
Length = 308
Score = 30.1 bits (67), Expect = 0.74
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 24/118 (20%)
Query: 22 IEPNADEVHRTVSRFLFNRKLL----------SSAKDFAYAHMLLL----THFLHGKRKQ 67
I P E + R++L SS YA + L+ H +
Sbjct: 16 IRPLLLESGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQS 75
Query: 68 QLANIREAEERYNAACETAARLTLENNFDLESPPMDFTYIPSSVPRDGVVVTDDPVIW 125
L I E + + A + DF P D D+PVIW
Sbjct: 76 ALRFIVEGKGAFTAVDGERTPMN----------EGDFILTPQWRWHDHGNPGDEPVIW 123
Score = 29.7 bits (66), Expect = 1.0
Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 311 DFAYAHMLLL----THFLHGKRKQQLANIREAEERYNAACETAARLTLENNFDLESPPMD 366
YA + L+ H + L I E + + A + D
Sbjct: 52 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMN----------EGD 101
Query: 367 FTYIPSSVPRDGVVVTDDPVIW 388
F P D D+PVIW
Sbjct: 102 FILTPQWRWHDHGNPGDEPVIW 123
>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta
chain {Escherichia coli [TaxId: 562]}
Length = 509
Score = 27.8 bits (61), Expect = 3.9
Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 34/215 (15%)
Query: 114 DGVVVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEKGT---PIYECNK 170
DG+V+ D C C+ C K K EK P E +
Sbjct: 207 DGIVLIDQD--KCRGWRMCI---TGCPYK------KIYFNWKSGKSEKCIFCYPRIEAGQ 255
Query: 171 KCACDETCLNRVVQKGNLVQD---CHTTITSRDGSVVLLRVADINLTKFSSDTMTEYE-- 225
C ETC+ R+ G L+ D ++ + + R D+ L + +
Sbjct: 256 PTVCSETCVGRIRYLGVLLYDADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKD 315
Query: 226 --VESVLDSLELTSDMTVYLVKWKNYDPEYNTWEPIENLGNC-----AKKLAEFLKAGPD 278
SV+++ S + ++WK P + + + + + A+ + G +
Sbjct: 316 GIPLSVIEA-AQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSN 374
Query: 279 QERTDFEKMKS-------FLSQHTEEEVESVLAKL 306
D E ++ L+ + V L ++
Sbjct: 375 GILPDVESLRIPVQYLANLLTAGDTKPVLRALKRM 409
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Length = 85
Score = 25.4 bits (56), Expect = 6.8
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 286 KMKSFLSQHTEEEVESVLAKLRNKKDFAYAHMLLLTHF 323
++K+ +S +TE E + ++ + N + L HF
Sbjct: 2 ELKNSISDYTETEFKKIIEDIINCEGDEKKQDDNLEHF 39
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous
sarcoma virus RSV [TaxId: 11886]}
Length = 147
Score = 26.1 bits (56), Expect = 8.0
Identities = 14/77 (18%), Positives = 20/77 (25%)
Query: 102 MDFTYIPSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEK 161
DFT P PR + VT D A R K +K +
Sbjct: 12 TDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDN 71
Query: 162 GTPIYECNKKCACDETC 178
G+ + +
Sbjct: 72 GSCFTSKSTREWLARWG 88
Score = 26.1 bits (56), Expect = 8.0
Identities = 14/77 (18%), Positives = 20/77 (25%)
Query: 365 MDFTYIPSSVPRDGVVVTDDPVIWCECRGNCVSNRDACCSDLNDADFAYSRRTKRLKLEK 424
DFT P PR + VT D A R K +K +
Sbjct: 12 TDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDN 71
Query: 425 GTPIYECNKKCACDETC 441
G+ + +
Sbjct: 72 GSCFTSKSTREWLARWG 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,255,502
Number of extensions: 107774
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 32
Length of query: 605
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 514
Effective length of database: 1,158,166
Effective search space: 595297324
Effective search space used: 595297324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)