BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14658
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H90|A Chain A, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|B Chain B, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|C Chain C, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
pdb|3H90|D Chain D, Structural Basis For The Autoregulation Of The Zinc
Transporter Yiip
Length = 283
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 32 VFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVV 91
+ ++ +I +++GS++I L D + + +L+ + + +PA FG +AE +
Sbjct: 15 LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESL 74
Query: 92 TGI------------LLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHS 139
+ L I+ +I+ +P + + ++ LI CT+ S
Sbjct: 75 AALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALI------CTIILVSFQ 128
Query: 140 HGGVREDVNVNVRAAFIHVLGDFLQSFGVFVA 171
VR + VRA +H D + + + +A
Sbjct: 129 RWVVRRTQSQAVRADMLHYQSDVMMNGAILLA 160
>pdb|2QFI|A Chain A, Structure Of The Zinc Transporter Yiip
pdb|2QFI|B Chain B, Structure Of The Zinc Transporter Yiip
Length = 300
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 32 VFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVV 91
+ ++ +I +++GS++I L D + + +L+ + + +PA FG +AE +
Sbjct: 22 LLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESL 81
Query: 92 TGI------------LLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHS 139
+ L I+ +I+ +P + + ++ LI CT+ S
Sbjct: 82 AALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALI------CTIILVSFQ 135
Query: 140 HGGVREDVNVNVRAAFIHVLGDFLQSFGVFVA 171
VR + VRA +H D + + + +A
Sbjct: 136 RWVVRRTQSQAVRADMLHYQSDVMMNGAILLA 167
>pdb|1HSL|A Chain A, Refined 1.89 Angstroms Structure Of The Histidine-Binding
Protein Complexed With Histidine And Its Relationship
With Many Other Active Transport(Slash)chemosensory
Receptors
pdb|1HSL|B Chain B, Refined 1.89 Angstroms Structure Of The Histidine-Binding
Protein Complexed With Histidine And Its Relationship
With Many Other Active Transport(Slash)chemosensory
Receptors
pdb|1HPB|P Chain P, The Bacterial Periplasmic Histidine-Binding Protein:
Structure(Slash)function Analysis Of The Ligand-Binding
Site And Comparison With Related Proteins
Length = 238
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 96 LYIAIER-VITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSH 140
LY A R V+ KN DI+PT+ S+ G V VL G T + H
Sbjct: 87 LYAADSRLVVAKNSDIQPTV---ASLKGKRVGVLQGTTQETFGNEH 129
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 108 FDIEPTIMLYTSVFGLIVNVLMGCTLHQHSH-SHGGVREDVNVNVRAAFIHVLGDFLQSF 166
F +P+I+++T+ FG +G H+ HGG+ + V+ + I LGD
Sbjct: 270 FTDQPSIVIFTANFGD-----LGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKA 324
Query: 167 GVFVAAVVIY 176
G A IY
Sbjct: 325 GEKYQATTIY 334
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 108 FDIEPTIMLYTSVFGLIVNVLMGCTLHQHSH-SHGGVREDVNVNVRAAFIHVLGDFLQSF 166
F +P+I+++T+ FG +G H+ HGG+ + V+ + I LGD
Sbjct: 270 FTDQPSIVIFTANFGD-----LGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKA 324
Query: 167 GVFVAAVVIY 176
G A IY
Sbjct: 325 GEKYQATTIY 334
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 108 FDIEPTIMLYTSVFGLIVNVLMGCTLHQHSH-SHGGVREDVNVNVRAAFIHVLGDFLQSF 166
F +P+I+++T+ FG +G H+ HGG+ + V+ + I LGD
Sbjct: 270 FTDQPSIVIFTANFGD-----LGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKA 324
Query: 167 GVFVAAVVIY 176
G A IY
Sbjct: 325 GEKYQATTIY 334
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 108 FDIEPTIMLYTSVFGLIVNVLMGCTLHQHSH-SHGGVREDVNVNVRAAFIHVLGDFLQSF 166
F +P+I+++T+ FG +G H+ HGG+ + V+ + I LGD
Sbjct: 270 FTDQPSIVIFTANFGD-----LGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKA 324
Query: 167 GVFVAAVVIY 176
G A IY
Sbjct: 325 GEKYQATTIY 334
>pdb|2ZOV|A Chain A, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form I)
Length = 210
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 203 ILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT 262
ILR I VL GIP + + F G + N W LS D+A S V G
Sbjct: 89 ILRAIAPVL-NGIPNRISLAGHTDDFPYANGEKGYSN---WELSADRANASRRELVAGGL 144
Query: 263 DAGLILK 269
D G +L+
Sbjct: 145 DNGKVLR 151
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 108 FDIEPTIMLYTSVFGLIVNVLMGCTLHQHSH-SHGGVREDVNVNVRAAFIHVLGDFLQSF 166
F +P+I+++T+ FG +G H+ HGG+ + V+ + I LGD
Sbjct: 270 FTDQPSIVIFTANFGD-----LGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKA 324
Query: 167 GVFVAAVVIY 176
G A IY
Sbjct: 325 GEKYQATTIY 334
>pdb|2ZVY|A Chain A, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Ii)
pdb|2ZVY|B Chain B, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Ii)
pdb|2ZVZ|A Chain A, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Iii)
pdb|2ZVZ|B Chain B, Structure Of The Periplasmic Domain Of Motb From
Salmonella (Crystal Form Iii)
Length = 183
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 203 ILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT 262
ILR I VL GIP + + F G + N W LS D+A S V G
Sbjct: 78 ILRAIAPVL-NGIPNRISLAGHTDDFPYANGEKGYSN---WELSADRANASRRELVAGGL 133
Query: 263 DAGLILK 269
D G +L+
Sbjct: 134 DNGKVLR 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,923,429
Number of Sequences: 62578
Number of extensions: 280749
Number of successful extensions: 2067
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2063
Number of HSP's gapped (non-prelim): 10
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)