Query psy14658
Match_columns 306
No_of_seqs 128 out of 1224
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:20:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03557 zinc transporter ZitB 100.0 1.1E-54 2.4E-59 392.6 36.1 276 19-304 17-305 (312)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 1.5E-52 3.2E-57 375.4 32.1 275 13-296 5-295 (304)
3 COG1230 CzcD Co/Zn/Cd efflux s 100.0 5.6E-52 1.2E-56 363.4 32.8 269 14-292 15-295 (296)
4 PRK09509 fieF ferrous iron eff 100.0 2.9E-51 6.4E-56 369.0 32.7 268 17-293 7-289 (299)
5 TIGR01297 CDF cation diffusion 100.0 7.8E-47 1.7E-51 336.0 28.2 251 33-291 2-268 (268)
6 KOG1482|consensus 100.0 1.3E-45 2.8E-50 325.4 22.4 300 5-304 52-379 (379)
7 PF01545 Cation_efflux: Cation 100.0 2.5E-46 5.3E-51 335.4 10.1 266 23-293 1-283 (284)
8 KOG1484|consensus 100.0 1.8E-38 3.9E-43 276.2 25.4 274 17-293 31-349 (354)
9 KOG1483|consensus 100.0 4.5E-40 9.8E-45 291.3 12.7 272 19-292 7-371 (404)
10 KOG1485|consensus 100.0 9.6E-36 2.1E-40 267.6 24.7 272 17-297 111-406 (412)
11 COG3965 Predicted Co/Zn/Cd cat 100.0 5.2E-29 1.1E-33 209.1 21.6 269 16-293 15-311 (314)
12 KOG2802|consensus 99.9 1.2E-21 2.6E-26 172.2 16.4 234 17-288 203-502 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 97.5 0.0013 2.9E-08 59.4 11.9 99 115-219 11-115 (304)
14 PRK09509 fieF ferrous iron eff 97.0 0.0052 1.1E-07 55.5 10.0 95 117-217 11-111 (299)
15 PRK03557 zinc transporter ZitB 96.8 0.011 2.3E-07 53.8 9.8 71 146-216 42-118 (312)
16 TIGR01297 CDF cation diffusion 96.5 0.016 3.4E-07 51.3 8.6 70 146-215 13-88 (268)
17 KOG1485|consensus 95.8 0.093 2E-06 48.7 10.4 92 116-213 114-211 (412)
18 COG1230 CzcD Co/Zn/Cd efflux s 95.0 0.21 4.5E-06 44.8 9.4 74 145-218 44-123 (296)
19 PF14535 AMP-binding_C_2: AMP- 92.1 1.6 3.6E-05 32.1 8.6 71 221-293 6-81 (96)
20 PF01545 Cation_efflux: Cation 90.2 0.27 5.8E-06 43.7 3.3 89 121-215 3-97 (284)
21 KOG1484|consensus 86.1 7.3 0.00016 35.4 9.4 70 145-214 57-132 (354)
22 TIGR03406 FeS_long_SufT probab 85.7 8.8 0.00019 31.7 9.2 78 219-296 73-161 (174)
23 COG4858 Uncharacterized membra 82.6 25 0.00054 29.3 10.3 101 91-201 105-210 (226)
24 PF03780 Asp23: Asp23 family; 82.5 11 0.00024 28.0 8.0 52 238-289 48-105 (108)
25 PF09580 Spore_YhcN_YlaJ: Spor 80.8 10 0.00023 31.1 7.9 66 220-290 76-142 (177)
26 KOG1483|consensus 80.2 13 0.00028 34.5 8.7 97 144-240 30-136 (404)
27 PF01883 DUF59: Domain of unkn 80.1 11 0.00024 25.8 6.7 42 245-286 31-72 (72)
28 PF09685 Tic20: Tic20-like pro 79.6 22 0.00048 26.3 8.8 67 17-83 35-104 (109)
29 TIGR02945 SUF_assoc FeS assemb 77.7 25 0.00054 25.8 9.1 47 248-294 37-83 (99)
30 PF06570 DUF1129: Protein of u 76.5 46 0.00099 28.1 10.9 17 120-136 185-201 (206)
31 COG1279 Lysine efflux permease 76.3 13 0.00028 31.4 7.0 61 148-210 34-94 (202)
32 cd04870 ACT_PSP_1 CT domains f 72.5 28 0.00062 23.9 8.0 65 219-290 11-75 (75)
33 PF04455 Saccharop_dh_N: LOR/S 67.9 21 0.00045 26.8 5.8 78 216-293 13-90 (103)
34 cd02413 40S_S3_KH K homology R 67.2 27 0.00058 24.8 6.1 69 223-292 6-78 (81)
35 TIGR02159 PA_CoA_Oxy4 phenylac 65.5 40 0.00087 27.0 7.4 43 247-290 24-66 (146)
36 KOG1482|consensus 64.3 58 0.0012 30.2 9.0 73 143-215 93-171 (379)
37 COG2092 EFB1 Translation elong 61.4 58 0.0013 23.6 6.8 68 217-287 15-83 (88)
38 cd02411 archeal_30S_S3_KH K ho 60.0 59 0.0013 23.2 6.9 69 222-291 13-83 (85)
39 COG4171 SapC ABC-type antimicr 59.8 1.2E+02 0.0025 26.3 10.1 70 95-177 83-153 (296)
40 PF07226 DUF1422: Protein of u 59.1 78 0.0017 24.1 8.5 86 13-108 2-90 (117)
41 PF13042 DUF3902: Protein of u 57.8 97 0.0021 24.8 9.5 77 13-90 56-138 (161)
42 cd02412 30S_S3_KH K homology R 55.3 69 0.0015 24.1 6.9 69 223-292 37-107 (109)
43 COG2056 Predicted permease [Ge 54.8 1.8E+02 0.004 27.1 11.2 22 112-133 190-211 (444)
44 KOG3320|consensus 50.7 86 0.0019 25.8 6.9 46 244-289 53-98 (192)
45 PF11712 Vma12: Endoplasmic re 49.6 77 0.0017 25.0 6.6 48 25-72 79-129 (142)
46 COG4956 Integral membrane prot 49.1 1.3E+02 0.0029 27.3 8.4 53 165-217 85-143 (356)
47 TIGR02898 spore_YhcN_YlaJ spor 48.4 1.2E+02 0.0026 24.6 7.6 65 221-291 56-124 (158)
48 TIGR00489 aEF-1_beta translati 48.0 1E+02 0.0023 22.3 7.7 67 217-287 15-83 (88)
49 PF01037 AsnC_trans_reg: AsnC 47.2 82 0.0018 21.0 5.8 61 220-289 11-71 (74)
50 PRK11589 gcvR glycine cleavage 45.9 1.3E+02 0.0029 25.2 7.7 68 220-293 108-180 (190)
51 PF04246 RseC_MucC: Positive r 45.3 1.4E+02 0.0031 23.1 7.8 58 22-79 66-123 (135)
52 PRK11056 hypothetical protein; 45.2 1.4E+02 0.003 22.9 8.8 87 15-111 4-93 (120)
53 cd04887 ACT_MalLac-Enz ACT_Mal 45.1 86 0.0019 21.0 5.6 56 219-280 11-66 (74)
54 PRK10447 HflBKC-binding inner 45.0 2E+02 0.0044 24.7 17.1 43 1-43 2-44 (219)
55 PRK00435 ef1B elongation facto 42.2 1.3E+02 0.0029 21.8 7.2 67 217-287 15-83 (88)
56 TIGR00439 ftsX putative protei 42.1 2.6E+02 0.0057 25.2 10.5 68 216-284 76-161 (309)
57 PRK10929 putative mechanosensi 42.1 4.9E+02 0.011 28.3 19.5 31 12-42 513-543 (1109)
58 PRK11118 putative monooxygenas 38.7 1.6E+02 0.0035 21.8 6.3 65 222-292 24-89 (100)
59 COG3333 Uncharacterized protei 38.5 3.7E+02 0.0081 25.9 10.6 25 66-90 276-300 (504)
60 cd04869 ACT_GcvR_2 ACT domains 36.6 1.4E+02 0.003 20.4 8.3 59 219-280 11-74 (81)
61 PRK10913 dipeptide transporter 36.4 3.2E+02 0.0069 24.5 13.8 112 78-212 76-188 (300)
62 PF13740 ACT_6: ACT domain; PD 36.3 1.4E+02 0.0031 20.4 6.8 49 219-271 14-62 (76)
63 PF12270 Cyt_c_ox_IV: Cytochro 34.9 2.3E+02 0.005 22.4 7.1 50 28-79 10-69 (137)
64 PRK04191 rps3p 30S ribosomal p 34.6 1.9E+02 0.0041 24.6 7.1 72 221-293 14-87 (207)
65 PF03147 FDX-ACB: Ferredoxin-f 33.3 1.9E+02 0.004 20.9 6.9 64 218-281 17-91 (94)
66 PRK15406 oligopeptide ABC tran 33.3 3.6E+02 0.0079 24.2 13.0 116 75-213 74-192 (302)
67 PHA02568 J baseplate assembly 32.8 1.3E+02 0.0029 27.1 6.2 65 213-278 178-243 (300)
68 PRK10555 aminoglycoside/multid 32.8 1.8E+02 0.0038 31.3 8.0 55 221-277 58-113 (1037)
69 PF04531 Phage_holin_1: Bacter 32.3 1.9E+02 0.0041 20.7 6.1 51 16-68 6-56 (84)
70 PRK15127 multidrug efflux syst 32.2 1.8E+02 0.0039 31.2 8.0 59 217-277 54-113 (1049)
71 PRK11670 antiporter inner memb 31.8 3E+02 0.0065 25.6 8.6 44 247-290 46-89 (369)
72 PF08803 ydhR: Putative mono-o 31.6 2.2E+02 0.0047 21.1 6.0 63 223-291 22-85 (97)
73 PF07687 M20_dimer: Peptidase 31.4 79 0.0017 23.0 3.9 32 247-278 76-107 (111)
74 PRK11023 outer membrane lipopr 31.3 79 0.0017 26.4 4.2 71 211-291 81-152 (191)
75 PF08478 POTRA_1: POTRA domain 30.9 1.3E+02 0.0029 19.8 4.7 46 206-254 21-66 (69)
76 PF06649 DUF1161: Protein of u 30.6 1.1E+02 0.0023 19.8 3.6 28 266-294 3-30 (52)
77 COG2151 PaaD Predicted metal-s 30.1 2.5E+02 0.0054 21.3 8.3 45 250-295 51-96 (111)
78 PF06645 SPC12: Microsomal sig 29.9 1.3E+02 0.0029 21.0 4.5 33 16-51 6-38 (76)
79 PF07444 Ycf66_N: Ycf66 protei 29.8 2.1E+02 0.0046 20.5 8.9 44 159-204 35-81 (84)
80 cd04885 ACT_ThrD-I Tandem C-te 29.8 1.7E+02 0.0037 19.4 6.4 50 221-277 12-61 (68)
81 TIGR00927 2A1904 K+-dependent 29.6 3.2E+02 0.007 29.1 8.7 29 182-212 584-612 (1096)
82 TIGR01008 rpsC_E_A ribosomal p 29.6 2.4E+02 0.0053 23.7 6.8 70 222-292 13-84 (195)
83 PF10934 DUF2634: Protein of u 29.5 2.3E+02 0.005 21.4 6.1 51 207-258 52-107 (112)
84 PF04865 Baseplate_J: Baseplat 29.3 3.5E+02 0.0076 23.1 8.2 54 219-275 119-173 (243)
85 PRK09579 multidrug efflux prot 29.1 2.3E+02 0.0049 30.4 8.1 53 221-276 60-113 (1017)
86 PRK10614 multidrug efflux syst 28.9 2.2E+02 0.0048 30.5 7.9 49 223-277 66-114 (1025)
87 PRK12585 putative monovalent c 28.3 3.6E+02 0.0078 22.7 7.7 18 158-175 41-58 (197)
88 PRK11179 DNA-binding transcrip 27.9 2.9E+02 0.0064 21.8 6.9 63 219-290 81-143 (153)
89 PRK09577 multidrug efflux prot 27.4 2.5E+02 0.0054 30.2 8.0 54 221-277 58-112 (1032)
90 PF11654 DUF2665: Protein of u 26.8 57 0.0012 20.6 1.9 17 182-198 5-21 (47)
91 PF04219 DUF413: Protein of un 26.8 30 0.00066 25.4 0.8 32 77-108 4-41 (93)
92 PF09877 DUF2104: Predicted me 26.7 1.4E+02 0.003 22.1 4.2 25 64-95 65-89 (99)
93 PF01810 LysE: LysE type trans 25.9 1.9E+02 0.004 23.7 5.6 64 149-214 25-88 (191)
94 PRK11281 hypothetical protein; 25.8 9E+02 0.019 26.4 20.6 30 13-42 536-565 (1113)
95 PF09390 DUF1999: Protein of u 25.7 1.6E+02 0.0034 23.6 4.6 52 239-291 73-126 (161)
96 PRK09304 arginine exporter pro 25.5 2.7E+02 0.0059 23.3 6.6 55 151-207 37-91 (207)
97 PF14007 YtpI: YtpI-like prote 25.2 2.7E+02 0.0059 20.2 8.7 27 184-210 54-80 (89)
98 PRK10417 nikC nickel transport 24.2 4.9E+02 0.011 22.8 12.4 17 74-90 40-56 (272)
99 PRK05783 hypothetical protein; 24.1 2.8E+02 0.006 19.9 5.9 63 221-290 20-83 (84)
100 COG1325 Predicted exosome subu 23.7 3.3E+02 0.007 21.9 6.1 57 217-274 18-77 (149)
101 TIGR00915 2A0602 The (Largely 23.4 3.5E+02 0.0075 29.1 8.2 54 222-277 59-113 (1044)
102 TIGR00949 2A76 The Resistance 23.4 3E+02 0.0064 22.3 6.3 56 150-207 21-76 (185)
103 PRK10633 hypothetical protein; 23.4 1.7E+02 0.0036 20.9 4.0 34 13-46 2-35 (80)
104 PF01390 SEA: SEA domain; Int 23.0 3E+02 0.0064 19.9 7.2 55 223-277 39-95 (107)
105 PF04865 Baseplate_J: Baseplat 23.0 2.6E+02 0.0056 23.9 6.1 64 214-279 159-225 (243)
106 PF04972 BON: BON domain; Int 22.9 29 0.00063 22.9 0.1 29 211-239 30-58 (64)
107 PRK08201 hypothetical protein; 22.6 3.2E+02 0.0068 26.0 7.2 43 246-289 318-360 (456)
108 KOG0144|consensus 22.3 1.8E+02 0.0039 27.6 5.1 86 206-297 33-120 (510)
109 PF13291 ACT_4: ACT domain; PD 22.3 2.6E+02 0.0057 19.0 7.5 59 220-284 19-78 (80)
110 TIGR02790 nickel_nikC nickel A 21.9 5.3E+02 0.011 22.4 13.0 79 75-174 36-115 (258)
111 PF11062 DUF2863: Protein of u 21.9 49 0.0011 30.9 1.3 39 264-305 336-374 (398)
112 PRK10503 multidrug efflux syst 21.5 3.9E+02 0.0084 28.8 8.1 53 222-277 70-123 (1040)
113 TIGR00948 2a75 L-lysine export 21.5 4.3E+02 0.0094 21.3 6.9 57 150-208 22-78 (177)
114 PF06796 NapE: Periplasmic nit 21.4 2.5E+02 0.0055 18.5 4.7 10 15-24 13-22 (56)
115 PF03755 YicC_N: YicC-like fam 21.2 1.7E+02 0.0037 23.6 4.3 50 239-292 20-71 (159)
116 COG0092 RpsC Ribosomal protein 21.1 2.8E+02 0.006 24.1 5.6 69 222-291 26-96 (233)
117 KOG0129|consensus 20.9 1.1E+02 0.0023 29.7 3.3 53 251-303 398-463 (520)
118 PRK11027 hypothetical protein; 20.5 48 0.001 25.2 0.8 31 77-107 13-49 (112)
119 PRK11380 hypothetical protein; 20.4 4.6E+02 0.0099 24.2 7.1 60 74-133 8-88 (353)
No 1
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=1.1e-54 Score=392.56 Aligned_cols=276 Identities=32% Similarity=0.583 Sum_probs=251.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH------
Q psy14658 19 ARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT------ 92 (306)
Q Consensus 19 ~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~------ 92 (306)
.+|++++++++|++++++|+++|+++||.||++||+||+.|+++++++++++++++||||++|||||+|+|+++
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 47788889999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred ------HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHH
Q psy14658 93 ------GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSF 166 (306)
Q Consensus 93 ------~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~ 166 (306)
.+++++|+.++++|.+ .+..++++++++++++|.+.++++++. ++.+|.+++++++|++.|+++|+
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~s~~l~a~~~h~~~D~l~s~ 168 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRP-VAGGMMMAIAVAGLLANILSFWLLHHG-------SEEKNLNVRAAALHVLGDLLGSV 168 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHHHHHHHHHHHHhcc-------cccCCHHHHHHHHHHHHHHHHHH
Confidence 3457999999998864 445567778889999999888877652 45567889999999999999999
Q ss_pred HHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHh-cCCcCccccceeEEEee
Q psy14658 167 GVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTF-LDIEGVEKVHNLRIWAL 245 (306)
Q Consensus 167 ~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i-~~~~~v~~v~~~~~~~~ 245 (306)
+++++.++..+ +||+|+||++++++++++++.+++++|+++++|||++|++++.+++++.+ ++.|+|.+++++|+|+.
T Consensus 169 ~vlv~~~~~~~-~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~ 247 (312)
T PRK03557 169 GAIIAALIIIW-TGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMV 247 (312)
T ss_pred HHHHHHHHHHH-cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEe
Confidence 99999988877 89999999999999999999999999999999999999988899999887 57999999999999999
Q ss_pred cCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCCCcccCCccCCC
Q psy14658 246 SLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNATMEACDQCQSP 304 (306)
Q Consensus 246 ~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~~~~~~~~~ 304 (306)
| +.+++++|+.++++.+.++++++++++|++++++.++|||+||.+...+.|+.|++-
T Consensus 248 G-~~~~v~~hv~v~~~~~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~~~~~~~~~ 305 (312)
T PRK03557 248 G-EKPVMTLHVQVIPPHDHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPDCHLNQGV 305 (312)
T ss_pred C-CeEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCcchhhhhhh
Confidence 6 788999999999999999999999999999999999999999988788888888864
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=375.42 Aligned_cols=275 Identities=23% Similarity=0.401 Sum_probs=257.7
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH
Q psy14658 13 NKNDKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT 92 (306)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~ 92 (306)
.++.+..+|+.++++++|++++++|+++|+++||.||+|||+||++|++++++.++++++++||||++|||||+|.|+++
T Consensus 5 ~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~ 84 (304)
T COG0053 5 EERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLA 84 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred ------------HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHH
Q psy14658 93 ------------GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLG 160 (306)
Q Consensus 93 ------------~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~ 160 (306)
..++++++.++++|++...+.+++++++++++++..++.+.++. .++.+|+.+.++++|.+.
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~------~kk~~S~aL~Ada~h~~s 158 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRV------GKKTNSQALIADALHHRS 158 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH------HHHhCCHHHHHHhHHHHH
Confidence 33678999999998888888999999999999999999999988 468899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCcccccee
Q psy14658 161 DFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNL 240 (306)
Q Consensus 161 D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~ 240 (306)
|+++|+++++|++. .+ +||+|+||+++++|+++|++.+++++|+++..|||+.++++..+++++.+.+.|+|.++|++
T Consensus 159 D~~ts~~~lvgl~~-~~-~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~l 236 (304)
T COG0053 159 DVLTSLAVLVGLLG-SL-LGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDL 236 (304)
T ss_pred HHHHHHHHHHHHHH-HH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeecc
Confidence 99999999999994 44 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCC-CceeEEEeeecCCCcc
Q psy14658 241 RIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFD-FFEMTLQIEEFNATME 296 (306)
Q Consensus 241 ~~~~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~-v~~v~i~i~p~~~~~~ 296 (306)
|+|+. |+.+++++|++++|++ ++|+|.+++++++++.++ +.+++||+||......
T Consensus 237 r~R~~-G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~ 295 (304)
T COG0053 237 RTRKS-GSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEE 295 (304)
T ss_pred eeeee-CCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCccccc
Confidence 99975 5899999999999997 789999999999999997 9999999999886443
No 3
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-52 Score=363.41 Aligned_cols=269 Identities=37% Similarity=0.688 Sum_probs=251.6
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHH--
Q psy14658 14 KNDKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVV-- 91 (306)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v-- 91 (306)
....+.+|.+++++.+|+.++++|+++|+++||.||++|++|++.|+++.++++++.+.++||++++|||||.|+|.+
T Consensus 15 ~~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa 94 (296)
T COG1230 15 HDNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAA 94 (296)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHH
Confidence 445678899999999999999999999999999999999999999999999999999999999999999999999993
Q ss_pred ----------HHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHH
Q psy14658 92 ----------TGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGD 161 (306)
Q Consensus 92 ----------~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D 161 (306)
+.++++|+++|+.+|. +.+...+++++++++++|+++++.+++. +.++.++|+.++|.++|
T Consensus 95 ~~nav~Li~~s~~I~~EAi~R~~~P~-~i~~~~ml~va~~GL~vN~~~a~ll~~~--------~~~~lN~r~a~LHvl~D 165 (296)
T COG1230 95 FLNALLLIVVSLLILWEAIQRLLAPP-PIHYSGMLVVAIIGLVVNLVSALLLHKG--------HEENLNMRGAYLHVLGD 165 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccchHHHHHHHHHHHHHHHHHhhCC--------CcccchHHHHHHHHHHH
Confidence 4457899999999998 4556899999999999999999999763 23579999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeE
Q psy14658 162 FLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLR 241 (306)
Q Consensus 162 ~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~ 241 (306)
.++|++++++.++..+ ++|+|+||+++++++++++..+++++|++.++|++..|+..+.+++++.+.+.|||.++||+|
T Consensus 166 ~Lgsv~vIia~i~i~~-~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlH 244 (296)
T COG1230 166 ALGSVGVIIAAIVIRF-TGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLH 244 (296)
T ss_pred HHHHHHHHHHHHHHHH-hCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecc
Confidence 9999999999999988 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 242 IWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 242 ~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
+|+++++....++|+.+++..+.+++.+++++++.++|++.++|||+|+..
T Consensus 245 vWsi~~~~~~~t~Hv~v~~~~~~~~~~~~~~~~l~~~~~I~hvTiQ~e~~~ 295 (296)
T COG1230 245 VWSITGGEHALTLHVVVDEVADADAALDQIVRRLLEKYGIEHVTIQLETEG 295 (296)
T ss_pred cCCCCCCceeEEEEEEecCccchHHHHHHHHHHHhhhcCcceEEEEecCCC
Confidence 999999999999999999767777799999999999999999999999753
No 4
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=2.9e-51 Score=368.96 Aligned_cols=268 Identities=17% Similarity=0.299 Sum_probs=246.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH----
Q psy14658 17 KKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT---- 92 (306)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~---- 92 (306)
+..+|+.++++++|++++++|+++|+++||.+|++||+||+.|+++.++++++.++++||||++|||||+|+|+++
T Consensus 7 ~~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~ 86 (299)
T PRK09509 7 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQ 86 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999932
Q ss_pred --------HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHH
Q psy14658 93 --------GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQ 164 (306)
Q Consensus 93 --------~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~ 164 (306)
.+++++|++++++|++...+.++++++++++++|.+++++.++. .++.+|++++++++|++.|+++
T Consensus 87 ~~~l~~~~~~~~~esi~~l~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~------~~~~~s~~l~a~~~~~~~D~~~ 160 (299)
T PRK09509 87 SMFISGSALFLFLTGIQHLISPTPMNDPGVGIIVTLVALICTLILVTFQRWV------VRKTQSQAVRADMLHYQSDVMM 160 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHH
Confidence 33579999999999866667777888999999999988887765 3467899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEe
Q psy14658 165 SFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWA 244 (306)
Q Consensus 165 s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~ 244 (306)
|+++++|+.+.++ ||+|+||++++++++++++.+++++|++...|+|++|+++..++|++.++++|+|.+++++|+|+
T Consensus 161 s~~vl~~~~~~~~--g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~ 238 (299)
T PRK09509 161 NGAILLALGLSWY--GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQ 238 (299)
T ss_pred HHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEe
Confidence 9999999888765 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 245 LSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 245 ~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
.| ++..+++|+.+++++ +.|++.++++++|+++++..+++||+||++.
T Consensus 239 ~G-~~~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~~v~ihveP~~~ 289 (299)
T PRK09509 239 SG-PTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGSDVIIHQDPCSV 289 (299)
T ss_pred eC-CeEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 86 667999999999986 6799999999999999987899999999764
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=7.8e-47 Score=335.96 Aligned_cols=251 Identities=38% Similarity=0.637 Sum_probs=232.0
Q ss_pred HHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH------------HHHHHHHH
Q psy14658 33 FMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT------------GILLYIAI 100 (306)
Q Consensus 33 ~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~------------~~i~~~si 100 (306)
++++|+++|+++||.+|++||+||+.|+++.++++++++.++||||++|||||+|+|+++ .+++++++
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999933 33579999
Q ss_pred HHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy14658 101 ERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPE 180 (306)
Q Consensus 101 ~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~ 180 (306)
.++++|++.+.+.++++++++++++|.+++++.++. .++.+|+.+++++.|++.|+++|+++++++.+..+ +
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~--~ 153 (268)
T TIGR01297 82 ERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRV------GHRLGSLALRAAALHVLSDALSSVGVLIGALLIYF--G 153 (268)
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHHh------CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 999998766677788889999999999999998876 35678999999999999999999999999999887 4
Q ss_pred CeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCC
Q psy14658 181 WVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKP 260 (306)
Q Consensus 181 ~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~ 260 (306)
++|+||++++++++++++.+++++|++...|+|.+|+++..+++++.+++.|+|.+++++|+|+.|++++.+++|+.+++
T Consensus 154 ~~~~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~ 233 (268)
T TIGR01297 154 WHWADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDP 233 (268)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999999999866899999999999
Q ss_pred CC---CHHHHHHHHHHHHhhhC-CCceeEEEeeec
Q psy14658 261 GT---DAGLILKQASRLVHTKF-DFFEMTLQIEEF 291 (306)
Q Consensus 261 ~~---~~~~i~~~i~~~l~~~~-~v~~v~i~i~p~ 291 (306)
++ +++++.+++++++++++ ++.+++||+||+
T Consensus 234 ~~~~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 234 DLDLKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred CCChhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 97 67999999999998875 899999999984
No 6
>KOG1482|consensus
Probab=100.00 E-value=1.3e-45 Score=325.37 Aligned_cols=300 Identities=52% Similarity=0.921 Sum_probs=274.4
Q ss_pred ccccccc-----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCC
Q psy14658 5 DHCHRER-----KNKNDKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATK 79 (306)
Q Consensus 5 ~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~ 79 (306)
+|||.+. ...+.+..+|.++.+.++.+.+.+.|++.|+..||.|+++|+.|.+.|+.+..+++++++.++||+++
T Consensus 52 ~~c~~~~~~~~~~~~~~~~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~ 131 (379)
T KOG1482|consen 52 HHCHRHPDSCDSSDAKRRAAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATK 131 (379)
T ss_pred cccccCCCCCccchhhhhhhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCC
Confidence 5676544 22233345789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHH------------HHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCc---
Q psy14658 80 QMPFGWYRAEVV------------TGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVR--- 144 (306)
Q Consensus 80 ~~p~G~~r~e~v------------~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~--- 144 (306)
+.+|||.|+|.+ .++++++++++++++..+.+-.++++++.+++++|.++.+++...++.++|..
T Consensus 132 r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~~ev~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s 211 (379)
T KOG1482|consen 132 RMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGDYEVNGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHS 211 (379)
T ss_pred ceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCceeecceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCC
Confidence 999999999993 34568999999999998888899999999999999999999876544443211
Q ss_pred ccc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q psy14658 145 EDV--------NVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIP 216 (306)
Q Consensus 145 ~~~--------s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p 216 (306)
..+ +.++++.+.|.+.|.+.|++|+++..+.++.|+|.++||+.+++.+++.+.+..+++|+.+..||+..|
T Consensus 212 ~g~~h~~~~~~n~nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P 291 (379)
T KOG1482|consen 212 HGHSHDHGEELNLNVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTP 291 (379)
T ss_pred cCcccccccccchHHHHHHHHHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCC
Confidence 112 389999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCCCcc
Q psy14658 217 RGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNATME 296 (306)
Q Consensus 217 ~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~ 296 (306)
.+.+.+++++.+.+.+||..+|++|+|.++-++....+|+..+++.+++++++++.+.++++|++.++|||+||..++.+
T Consensus 292 ~~~d~~~~~~~l~~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~ 371 (379)
T KOG1482|consen 292 RNLDFDKVKKGLLSIEGVKAVHDLHIWSITVGKVALSVHLAIDSEADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMD 371 (379)
T ss_pred ccCcHHHHHHHHhhhcceeEEEEEEEEEEecCceEEEEEEeecCCCCHHHHHHHHHHHHHhhcceEEEEEEecCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCC
Q psy14658 297 ACDQCQSP 304 (306)
Q Consensus 297 ~~~~~~~~ 304 (306)
+|..|+.|
T Consensus 372 ~c~~c~~p 379 (379)
T KOG1482|consen 372 DCLMCQTP 379 (379)
T ss_pred hHhhccCC
Confidence 99999976
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=2.5e-46 Score=335.42 Aligned_cols=266 Identities=29% Similarity=0.537 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH----------
Q psy14658 23 LWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT---------- 92 (306)
Q Consensus 23 l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~---------- 92 (306)
+++++++|++++++|+++|+++||.++++||+|++.|+++.++++++.+.++||+|++|||||+|+|+++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred --HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHH
Q psy14658 93 --GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFV 170 (306)
Q Consensus 93 --~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i 170 (306)
.+++++++++++++++...+.+++.++++++++|..++++.++.++ ..+.+|+.+++++.+++.|++.++++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~----~~~~~s~~l~~~~~~~~~d~~~s~~v~i 156 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPSPPGIVLIVALVSIIVNLLLAWYLRRVGK----RLQRRSPALRADALHSLIDVLSSLAVLI 156 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSSTTTS-THHHHHHHHHHHHHHHHHHHHHH----HS---SHHHHHHHHHHHHHTS-SSTS-S
T ss_pred hHHHHHHHHhhcccccccchhhhhhhhhhhhhhhHHHHHHHHHhhccc----ccccccccchhhhhhcccchhHHHHHHH
Confidence 2357889999999976666667666699999999999999988643 1234599999999999999999999999
Q ss_pred HHHHHHhcCCCee-cchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEeecCCe
Q psy14658 171 AAVVIYFKPEWVL-VDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDK 249 (306)
Q Consensus 171 ~~~~~~~~~~~~~-~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~ 249 (306)
+.++..+ .++.| +||++++++++++++.+++++|++...|+|++|+++..+++++.+++.|+|.+++++|+|+.|+++
T Consensus 157 ~~~~~~~-~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~ 235 (284)
T PF01545_consen 157 SLLLAYL-GPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNK 235 (284)
T ss_dssp SSTSSST-T-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-E
T ss_pred HHHHHHH-HhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCc
Confidence 9999887 55554 999999999999999999999999999999999999999999999999999999999999998769
Q ss_pred EEEEEEEEeCCCC---CHHHHHHHHHHHHhhhC-CCceeEEEeeecCC
Q psy14658 250 AALSAHLAVKPGT---DAGLILKQASRLVHTKF-DFFEMTLQIEEFNA 293 (306)
Q Consensus 250 ~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~-~v~~v~i~i~p~~~ 293 (306)
+++++++++++++ +.+++++++++++++++ ++.+++||+||+++
T Consensus 236 ~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 236 YVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 9999999999997 68899999999999999 89999999999875
No 8
>KOG1484|consensus
Probab=100.00 E-value=1.8e-38 Score=276.16 Aligned_cols=274 Identities=28% Similarity=0.524 Sum_probs=239.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH----
Q psy14658 17 KKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT---- 92 (306)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~---- 92 (306)
.+.+|-.+..+++|+.++.++++.|..+||..|++|++|+++|+.+..+.+++..++++|++..||||+.|+|.++
T Consensus 31 ~~~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n 110 (354)
T KOG1484|consen 31 DKDSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVN 110 (354)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHH
Confidence 3556677778999999999999999999999999999999999999999999999999999999999999999944
Q ss_pred --------HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCC---------------------
Q psy14658 93 --------GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQH-SHSHGG--------------------- 142 (306)
Q Consensus 93 --------~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~-~~~~~~--------------------- 142 (306)
.+++.|+++|+++|. +...+..++++..++++|++..+.++.. ++.++.
T Consensus 111 ~vflvl~a~fi~~Es~eRl~~pp-ei~t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~~~ 189 (354)
T KOG1484|consen 111 GVFLVLIAFFIFSESVERLFDPP-EIHTNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLGVW 189 (354)
T ss_pred HHHHHHHHHHHhHHHHHHhcCch-hcCCceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccccc
Confidence 346899999999995 7778888889999999999999887652 222210
Q ss_pred ---------CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q psy14658 143 ---------VREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLME 213 (306)
Q Consensus 143 ---------~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~ 213 (306)
.....+..+...+.|.++|.++|++++++.++... .||.++||+++++|+++++.+.+|++|++..+||+
T Consensus 190 ~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~-~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq 268 (354)
T KOG1484|consen 190 DLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKL-FGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQ 268 (354)
T ss_pred ccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01112234668899999999999999999999987 79999999999999999999999999999999999
Q ss_pred CCCCCCC--HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeec
Q psy14658 214 GIPRGVE--FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEF 291 (306)
Q Consensus 214 ~~p~~~~--~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 291 (306)
++||+.. .++..+.+.+.+||.++.+.|+|+++.+.++..+|+++..+.|.+.+..++.+++.+. ||++.|||+|.+
T Consensus 269 ~tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~dade~~vl~~V~~~~~~~-gV~~ltvQv~~~ 347 (354)
T KOG1484|consen 269 RTPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDADEQSVLAHVTRKLEDA-GVKDLTVQVEKE 347 (354)
T ss_pred cCChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCcchhHHHHHHHHHHHhc-ceeEEEEEEecc
Confidence 9998763 2455666667999999999999999999999999999999999999999999988764 899999998876
Q ss_pred CC
Q psy14658 292 NA 293 (306)
Q Consensus 292 ~~ 293 (306)
+.
T Consensus 348 ~~ 349 (354)
T KOG1484|consen 348 NS 349 (354)
T ss_pred cc
Confidence 54
No 9
>KOG1483|consensus
Probab=100.00 E-value=4.5e-40 Score=291.26 Aligned_cols=272 Identities=29% Similarity=0.543 Sum_probs=246.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHHH-----
Q psy14658 19 ARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVTG----- 93 (306)
Q Consensus 19 ~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~~----- 93 (306)
.+..++..++++++++++|++.|+.++|+||++|++|++.|+++.++++++.+.+++.++.++|||+.|.|.+++
T Consensus 7 k~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~i 86 (404)
T KOG1483|consen 7 KSLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAI 86 (404)
T ss_pred cccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHH
Confidence 455667788999999999999999999999999999999999999999999999998899999999999999433
Q ss_pred -------HHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCC------------------------
Q psy14658 94 -------ILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGG------------------------ 142 (306)
Q Consensus 94 -------~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~------------------------ 142 (306)
.++.|+++|+++|....+|...+.+++++++.|.+..+.++..++.+++
T Consensus 87 fl~alc~~I~~EA~~R~I~p~~i~~P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~~~~ 166 (404)
T KOG1483|consen 87 FLTALCVSILIEAIERIIEPHHIENPILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHLHSH 166 (404)
T ss_pred HHHHHHHHHHHHHHHhhcCCccccCceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCCchh
Confidence 3679999999999988889999999999999999999999887655421
Q ss_pred ------------------------------------------------------CccccchhHHHHHHHHHHHHHHHHHH
Q psy14658 143 ------------------------------------------------------VREDVNVNVRAAFIHVLGDFLQSFGV 168 (306)
Q Consensus 143 ------------------------------------------------------~~~~~s~~l~a~~~~~~~D~~~s~~v 168 (306)
.++.++.+++..+.|.+.|++.++.|
T Consensus 167 ~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~I~V 246 (404)
T KOG1483|consen 167 AIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGSIIV 246 (404)
T ss_pred ccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccceEE
Confidence 11224567788899999999999999
Q ss_pred HHHHHHHHhcCCC---eecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEee
Q psy14658 169 FVAAVVIYFKPEW---VLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWAL 245 (306)
Q Consensus 169 ~i~~~~~~~~~~~---~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~ 245 (306)
+++++++|+ ++| .|+||++++++.++++.++++++|++..+||+.+|...+.+++++.+.++|||.++|++|+|++
T Consensus 247 i~~A~~v~~-t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvWqL 325 (404)
T KOG1483|consen 247 IVSALFVYK-TEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVWQL 325 (404)
T ss_pred EEEEEEEEe-cceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeeeee
Confidence 999999988 776 3799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 246 SLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 246 ~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
.+.++.+++||++....+--+++++||+.+.+ +|++.+|||+|.++
T Consensus 326 ~~~r~IAt~Hi~~~~p~~~~~~a~~ir~~fh~-~GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 326 AGSRIIATIHIQIQNPKEYMKIAEKIRSYFHD-QGIHSTTIQPEFAP 371 (404)
T ss_pred ccceEEEEEEEEecCcHHHHHHHHHHHHHHHh-cCCcceeeccchhh
Confidence 99999999999998887777999999988854 79999999999877
No 10
>KOG1485|consensus
Probab=100.00 E-value=9.6e-36 Score=267.56 Aligned_cols=272 Identities=17% Similarity=0.152 Sum_probs=220.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHH--
Q psy14658 17 KKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVTGI-- 94 (306)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~~~-- 94 (306)
+.++|+.|+++++|+.+++.|.++|+.+||+|++||++||+.|+++.++.++.++.++||++.+||+|++|.|+++.+
T Consensus 111 ~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~ 190 (412)
T KOG1485|consen 111 NAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAV 190 (412)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHH
Confidence 355889999999999999999999999999999999999999999999999999999999999999999999993322
Q ss_pred ----------HHHHHHHHhhcCCCc----Cc----hhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHH
Q psy14658 95 ----------LLYIAIERVITKNFD----IE----PTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFI 156 (306)
Q Consensus 95 ----------i~~~si~~l~~~~~~----~~----~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~ 156 (306)
++.+++.++..|... .+ +..+++..++.+....+.++..++- +.+.+|..+++.++
T Consensus 191 S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a~~~i~i~is~~~vk~~l~~~c------~~~~ns~iv~a~A~ 264 (412)
T KOG1485|consen 191 SVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINALWLIAIMISAKEVKLRLTLYC------AIKTNSNIVRANAW 264 (412)
T ss_pred HHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccchhhhheehhhHHHHHHHHHHHH------HHhcCcHHHHHHHH
Confidence 346666666652211 11 1222333334444444444443332 34567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcC-CcCcc
Q psy14658 157 HVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLD-IEGVE 235 (306)
Q Consensus 157 ~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~-~~~v~ 235 (306)
|+|.|++++..+++|+.+.++ .++|+||+++++++.++++.+.+-..+++.+|+|++.+++..+++.....+ .+.+.
T Consensus 265 dHr~D~lTn~vaLva~~la~~--~~~~lDP~gailVS~~ii~t~~~t~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~ 342 (412)
T KOG1485|consen 265 DHRNDVLTNSVALVAASLAYY--YNYWLDPIGAILVSTYIIYTGGRTGLENIKELVGRSAPPEYLEIITYLILQHGKLIK 342 (412)
T ss_pred HHHhHHHHHHHHHHHHHHHHh--hhhcccchhhhhhheehhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccc
Confidence 999999999999999999987 678999999999999999999999999999999997666667776666555 55788
Q ss_pred ccceeEEEeecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCCCceeEEEeeecCCCccc
Q psy14658 236 KVHNLRIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFDFFEMTLQIEEFNATMEA 297 (306)
Q Consensus 236 ~v~~~~~~~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~~ 297 (306)
.+..++....| ..+.+++++++++++ .++++.+.+++.|+..-.+....||++......++
T Consensus 343 ~idtv~~y~~g-~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~ever~fvh~d~e~~hr~~ 406 (412)
T KOG1485|consen 343 HIDTVRAYTFG-SHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPEVERAFVHIDYEFLHRPH 406 (412)
T ss_pred cceeeeeeccc-ceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcchheeeeeecCccccCCch
Confidence 88999999886 789999999999997 57999999999998755788999999976554433
No 11
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.2e-29 Score=209.13 Aligned_cols=269 Identities=15% Similarity=0.167 Sum_probs=227.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHc-CCCCCCCCCcchHHHH----
Q psy14658 16 DKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVAS-RPATKQMPFGWYRAEV---- 90 (306)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~-~~~~~~~p~G~~r~e~---- 90 (306)
...+++.+.++++.+++++.+++++|+++||.+++.||++|+.|+....+++...|+.. +|.|.|||||+.-+|+
T Consensus 15 ~~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~ 94 (314)
T COG3965 15 SSNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLA 94 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhh
Confidence 34678899999999999999999999999999999999999999999999999999998 6778899999999999
Q ss_pred --------HHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHH
Q psy14658 91 --------VTGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDF 162 (306)
Q Consensus 91 --------v~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~ 162 (306)
++.+-++.|+..+++++++.+|+.++.+++++...|...++..+|- +|...|+.+..+.+.|+.|.
T Consensus 95 ing~ll~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~------nrr~~s~lIald~kqW~Mst 168 (314)
T COG3965 95 INGTLLALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRL------NRRLKSPLIALDTKQWLMST 168 (314)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhh------hccCCCchhhhHHHHHHHHH
Confidence 3445689999999999999999999999999999999999999886 45678999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC------CeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCc---C
Q psy14658 163 LQSFGVFVAAVVIYFKPE------WVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIE---G 233 (306)
Q Consensus 163 ~~s~~v~i~~~~~~~~~~------~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~---~ 233 (306)
..|.++++|+...+...+ .+|+||..-.+++++++..+++.+|.+.++.+..+|++ ..+++.....+.. +
T Consensus 169 ~lS~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmtP~e-l~q~ies~~~~~v~k~~ 247 (314)
T COG3965 169 CLSAALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMTPNE-LQQSIESHAHEIVEKYG 247 (314)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHhc
Confidence 999999999998876322 26999999999999999999999999999999999984 4555555444322 2
Q ss_pred ccccceeEEEeecCCeEEEEEEEEeCCCC------CHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 234 VEKVHNLRIWALSLDKAALSAHLAVKPGT------DAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 234 v~~v~~~~~~~~~~~~~~v~v~i~~~~~~------~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
..+. ..++-+.| +...+++|..+|++. +.++|++++.+.|.+.-.-..+||.+..+++
T Consensus 248 f~~~-~~yvArVG-r~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~D~k 311 (314)
T COG3965 248 FPSY-HVYVARVG-RGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTRDEK 311 (314)
T ss_pred CchH-HHHHHHhc-cceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEecccc
Confidence 2222 33355665 779999999998885 5688888888888776434577777765544
No 12
>KOG2802|consensus
Probab=99.88 E-value=1.2e-21 Score=172.19 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=175.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHHHH--
Q psy14658 17 KKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVTGI-- 94 (306)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~~~-- 94 (306)
+...|+..+++++|++-..+|+.+|+++||.+|+|+++||++|+.+.++..+|++.+.+.||..|||||++..++...
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 456788899999999999999999999999999999999999999999999999999999999999999999995443
Q ss_pred -----------HHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhh----ccCCCC-----CCccccchhHHHH
Q psy14658 95 -----------LLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQ----HSHSHG-----GVREDVNVNVRAA 154 (306)
Q Consensus 95 -----------i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~----~~~~~~-----~~~~~~s~~l~a~ 154 (306)
-+|.++..+++|+|.++..|+..+...+++.-....+...+ ..+..+ +-.+.++|.....
T Consensus 283 gvGIfc~G~GlSiyhGv~gLlhpePi~~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DPs~nvV 362 (503)
T KOG2802|consen 283 GVGIFCMGCGLSIYHGVMGLLHPEPIESLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDPSTNVV 362 (503)
T ss_pred ccceeeecccchhhhccccccCCCCCcchHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCCcceEE
Confidence 37999999999998887778777777777766555544322 111100 0122334433322
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q psy14658 155 FIHVLGDFLQSFGVFVA---AVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDI 231 (306)
Q Consensus 155 ~~~~~~D~~~s~~v~i~---~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~ 231 (306)
.+.|...-.+++++ ..+..+ +|.|+.|++++++|+.++...
T Consensus 363 ---l~EDtAAVtGv~IAaa~m~lss~-tgnPIyD~~GSivvGaLLGmV-------------------------------- 406 (503)
T KOG2802|consen 363 ---LLEDTAAVTGVIIAAACMGLSSI-TGNPIYDSLGSIVVGALLGMV-------------------------------- 406 (503)
T ss_pred ---EecchHHHHHHHHHHHHHHHHHh-cCCCCccccchHHHHHHHHHH--------------------------------
Confidence 23344444444443 344555 899999999999999776654
Q ss_pred cCccccceeEEEeecCCeEEEEEEEEeCCCC------CH---------------------------HH-------HHHHH
Q psy14658 232 EGVEKVHNLRIWALSLDKAALSAHLAVKPGT------DA---------------------------GL-------ILKQA 271 (306)
Q Consensus 232 ~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~------~~---------------------------~~-------i~~~i 271 (306)
+.+++|++...+|.+++.....+.++..+ +- +. -.+++
T Consensus 407 --e~diyDvK~~diG~g~vRfKAE~DFdGr~vtrsYL~kqd~akml~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRl 484 (503)
T KOG2802|consen 407 --ENDIYDVKATDIGLGKVRFKAEVDFDGRVVTRSYLEKQDFAKMLQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRL 484 (503)
T ss_pred --HHhhhhccceeeccceeEEEEEeccCchhhHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHH
Confidence 23478888888898889999999998874 00 11 13678
Q ss_pred HHHHhhhC-CCceeEEEe
Q psy14658 272 SRLVHTKF-DFFEMTLQI 288 (306)
Q Consensus 272 ~~~l~~~~-~v~~v~i~i 288 (306)
+++|++.+ ++.+|++++
T Consensus 485 Ekel~~~~PeirHVDlEi 502 (503)
T KOG2802|consen 485 EKELKKRNPEIRHVDLEI 502 (503)
T ss_pred HHHHHHhCCCceeeeeec
Confidence 88888888 688888875
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.0013 Score=59.41 Aligned_cols=99 Identities=19% Similarity=0.243 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeecchhh
Q psy14658 115 MLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKP------EWVLVDPIC 188 (306)
Q Consensus 115 ~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~------~~~~~D~~~ 188 (306)
..-.+.+++.+|+.+.....-.+ .-.+|..|.+++.|.+.|+++++.+++++-....++ |+.-++.++
T Consensus 11 ~~~~~~~sl~~nl~l~~~K~~~g------~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~ 84 (304)
T COG0053 11 VRRAALISLAVNLALALLKLIAG------ILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLA 84 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Confidence 33455666666666665543332 345799999999999999999999999999887622 455699999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCCCCC
Q psy14658 189 TFLFALLVLATTFTILRDIMIVLMEGIPRGV 219 (306)
Q Consensus 189 si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~ 219 (306)
+++++++++..++.++++++..++...+.+.
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~ 115 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVEP 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 9999999999999999999999998555444
No 14
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=97.04 E-value=0.0052 Score=55.52 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCeecchhhHH
Q psy14658 117 YTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYF------KPEWVLVDPICTF 190 (306)
Q Consensus 117 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~------~~~~~~~D~~~si 190 (306)
-++.+++++|++++....-. ....+|..+.+++.|.+.|+++++.++++.-.... ..|+.-+++++++
T Consensus 11 ~~~~~~~~~n~~l~i~k~~~------g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l 84 (299)
T PRK09509 11 RAAIAATAMASLLLLIKIFA------WWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAAL 84 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHH
Confidence 35667777777777664333 23467999999999999999999999999888754 1255569999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCC
Q psy14658 191 LFALLVLATTFTILRDIMIVLMEGIPR 217 (306)
Q Consensus 191 ~i~~~i~~~~~~~~~~s~~~Ll~~~p~ 217 (306)
+.+++++..++.++++++..++...+.
T Consensus 85 ~~~~~l~~~~~~~~~esi~~l~~~~~~ 111 (299)
T PRK09509 85 AQSMFISGSALFLFLTGIQHLISPTPM 111 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999875543
No 15
>PRK03557 zinc transporter ZitB; Provisional
Probab=96.77 E-value=0.011 Score=53.82 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=62.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q psy14658 146 DVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFK------PEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIP 216 (306)
Q Consensus 146 ~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~------~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p 216 (306)
.+|..+.+++.|.+.|+++++..+++.-+...+ .|+.-++++.+++.+++++..++.++++++..|....+
T Consensus 42 tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l~~~~~ 118 (312)
T PRK03557 42 SGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERFRTPRP 118 (312)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 468999999999999999999999998887542 25556999999999999999999999999999986543
No 16
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=96.47 E-value=0.016 Score=51.35 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=62.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q psy14658 146 DVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFK------PEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGI 215 (306)
Q Consensus 146 ~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~------~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~ 215 (306)
.+|..+.+++.|.+.|+++++.++++....... .|+..++++++++.+++++..++.++++++..|++..
T Consensus 13 ~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~ 88 (268)
T TIGR01297 13 SGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPE 88 (268)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999998876542 2566799999999999999999999999999999754
No 17
>KOG1485|consensus
Probab=95.84 E-value=0.093 Score=48.68 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCeecchhhH
Q psy14658 116 LYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYF------KPEWVLVDPICT 189 (306)
Q Consensus 116 l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~------~~~~~~~D~~~s 189 (306)
..++-+++.+|+.++.-.... .-..+|..+-+++.|.+.|.++++...+++..... +-|..-+.|++.
T Consensus 114 ~~~~~i~l~~Nigl~vaK~~a------s~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~ 187 (412)
T KOG1485|consen 114 RRAAWIGLAANIGLAVAKVVA------SYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGL 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhH
Confidence 455666777777766554332 23567899999999999999999999999888654 224456999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhc
Q psy14658 190 FLFALLVLATTFTILRDIMIVLME 213 (306)
Q Consensus 190 i~i~~~i~~~~~~~~~~s~~~Ll~ 213 (306)
++++.+|...+.++++++...+.+
T Consensus 188 i~~S~iMa~agv~ii~sSl~~i~~ 211 (412)
T KOG1485|consen 188 IAVSVIMAMAGVQIIWSSLRLIVG 211 (412)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhc
Confidence 999999999999999999999998
No 18
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.21 Score=44.79 Aligned_cols=74 Identities=20% Similarity=0.242 Sum_probs=63.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCC
Q psy14658 145 EDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYF------KPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRG 218 (306)
Q Consensus 145 ~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~------~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~ 218 (306)
..+|..+.+++.|.+.|++.-+.++++..+..- -.|+.-+..+++++-+++++..+.-+++|++..+....|.+
T Consensus 44 ~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~ 123 (296)
T COG1230 44 LTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIH 123 (296)
T ss_pred HhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 357999999999999999999988888877643 13667799999999999999999999999999999765543
No 19
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=92.15 E-value=1.6 Score=32.08 Aligned_cols=71 Identities=7% Similarity=0.134 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC-----CHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT-----DAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~-----~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
..+|.+.+.++|++..-.++.+.+-+ +.=.+.+.++..++. +.+.+.++++++|++..++. +.|++.|...
T Consensus 6 P~~Ie~vl~~~~~~~~~y~i~v~~~~-~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~gt 81 (96)
T PF14535_consen 6 PSQIEEVLREFPEVSPEYQIVVTREG-GLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPPGT 81 (96)
T ss_dssp HHHHHHHHCTSTTEEEEEEEEEEEET-TEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-TT-
T ss_pred HHHHHHHHHhCcCCCCcEEEEEEcCC-CCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECCCC
Confidence 46899999999999877888888765 667888999998876 35778899999999998875 6787777653
No 20
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=90.23 E-value=0.27 Score=43.74 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCeecchhhHHHHHH
Q psy14658 121 FGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYF------KPEWVLVDPICTFLFAL 194 (306)
Q Consensus 121 ~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~------~~~~~~~D~~~si~i~~ 194 (306)
++++++++++....-. ....+|..+.+++.|.+.|+++.+..+.+...... ..|+.-++++++++.++
T Consensus 3 i~~~~~~~~~~~~~~~------~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~ 76 (284)
T PF01545_consen 3 ISLILNLILAVVKIIA------GIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSI 76 (284)
T ss_dssp HHHHHHCCTHHCTTCS------S-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhh
Confidence 3444455544443322 24568999999999999999999999888877654 12555699999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCC
Q psy14658 195 LVLATTFTILRDIMIVLMEGI 215 (306)
Q Consensus 195 ~i~~~~~~~~~~s~~~Ll~~~ 215 (306)
+++..++.++.+++..+++..
T Consensus 77 ~l~~~~~~~~~~si~~~~~~~ 97 (284)
T PF01545_consen 77 LLIFLGLFLIVESIQRLISPH 97 (284)
T ss_dssp HHHHHHHHHHHHHTTTSSSSS
T ss_pred hHhhhHHHHHHHHhhcccccc
Confidence 999999999999999999764
No 21
>KOG1484|consensus
Probab=86.08 E-value=7.3 Score=35.42 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=59.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q psy14658 145 EDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFK------PEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEG 214 (306)
Q Consensus 145 ~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~------~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~ 214 (306)
.++|..+.+++.|.+-|....++-+.+..+...+ .|...+..++++.=+++....++.+++|++.-|++-
T Consensus 57 ~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a~fi~~Es~eRl~~p 132 (354)
T KOG1484|consen 57 WSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIAFFIFSESVERLFDP 132 (354)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 4678999999999999999888888887776542 244468889999999999999999999999999983
No 22
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=85.66 E-value=8.8 Score=31.71 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=48.8
Q ss_pred CCHHHHHHHhcCC--cC----ccc---cceeEEEeecCC--eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 219 VEFTDVLNTFLDI--EG----VEK---VHNLRIWALSLD--KAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 219 ~~~~~i~~~i~~~--~~----v~~---v~~~~~~~~~~~--~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
...++|.+.++++ |+ +.+ ++++.+.....+ +..+.+.+..+.--....+.+.+++++....++.++.|+
T Consensus 73 ~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~ 152 (174)
T TIGR03406 73 DNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVE 152 (174)
T ss_pred ccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEE
Confidence 3446677777773 32 122 334444331113 555555554444446678889999999876689999999
Q ss_pred eeecCCCcc
Q psy14658 288 IEEFNATME 296 (306)
Q Consensus 288 i~p~~~~~~ 296 (306)
+...+.++.
T Consensus 153 l~~dp~W~~ 161 (174)
T TIGR03406 153 LVFDPPWSR 161 (174)
T ss_pred EEecCCCCh
Confidence 988887664
No 23
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=82.57 E-value=25 Score=29.27 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhcCCCcCchhHHHH----HHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHH
Q psy14658 91 VTGILLYIAIERVITKNFDIEPTIMLY----TSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSF 166 (306)
Q Consensus 91 v~~~i~~~si~~l~~~~~~~~~~~~l~----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~ 166 (306)
++.+.+.+++..+++.. .+...++ .++++-..-.++++|.+|+.- .++.+-...+.... .....+..+
T Consensus 105 lg~~aLlsgitaff~~n---A~~~GlItlll~a~vgGfamy~my~y~yr~~a----d~sqr~~~~K~~lv-~~~sm~lWi 176 (226)
T COG4858 105 LGAMALLSGITAFFQKN---AQVYGLITLLLTAVVGGFAMYIMYYYAYRMRA----DNSQRPGTWKYLLV-AVLSMLLWI 176 (226)
T ss_pred HHHHHHHHHHHHHHhcC---CcchhHHHHHHHHHhhhHHHHHHHHHHHHhhc----ccccCCchHHHHHH-HHHHHHHHH
Confidence 56777889999998764 2333333 334444444444455444321 11222233332211 111222223
Q ss_pred HHHHHHHHHHhcCC-CeecchhhHHHHHHHHHHHhH
Q psy14658 167 GVFVAAVVIYFKPE-WVLVDPICTFLFALLVLATTF 201 (306)
Q Consensus 167 ~v~i~~~~~~~~~~-~~~~D~~~si~i~~~i~~~~~ 201 (306)
++.++-.+ +++. .+-+||++-.+++..++..=+
T Consensus 177 ~v~i~t~~--lPtslN~~L~pi~l~IiGav~lalRf 210 (226)
T COG4858 177 AVMIATVF--LPTSLNPQLPPIALTIIGAVILALRF 210 (226)
T ss_pred HHHHHHhh--CCCcCCcCCchHHHHHHHHHHHHHHH
Confidence 33322111 1112 256999998888887765544
No 24
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=82.49 E-value=11 Score=28.03 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=33.6
Q ss_pred ceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHh----hhCC--CceeEEEee
Q psy14658 238 HNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVH----TKFD--FFEMTLQIE 289 (306)
Q Consensus 238 ~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~----~~~~--v~~v~i~i~ 289 (306)
..+++..-.++.+.+++++.+..+.+..++.++++++++ +.-| +.+|+|+++
T Consensus 48 ~~v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 48 KGVKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred CCeEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 345666431577999999999999866555555555544 4323 557777665
No 25
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=80.82 E-value=10 Score=31.08 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=48.6
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhC-CCceeEEEeee
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKF-DFFEMTLQIEE 290 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~-~v~~v~i~i~p 290 (306)
..+++.+.+.+++||. +..+--. ++..+|-+.+..+ .....++.++|++.+++.+ ++.+|.|--+|
T Consensus 76 ~a~~i~~~v~~~~~V~---~A~vvv~-~~~a~Vav~~~~~-~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~ 142 (177)
T PF09580_consen 76 LADRIANRVKKVPGVE---DATVVVT-DDNAYVAVDLDFN-RFNTKKIKKKVEKAVKSADPRIYNVYVSTDP 142 (177)
T ss_pred HHHHHHHHHhcCCCce---EEEEEEE-CCEEEEEEEeccc-ccchhHHHHHHHHHHHHhCCCccEEEEEcCH
Confidence 3467788888888664 5555544 4767777777733 5678999999999999988 56888887665
No 26
>KOG1483|consensus
Probab=80.23 E-value=13 Score=34.54 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=70.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC--
Q psy14658 144 REDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYF------KPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGI-- 215 (306)
Q Consensus 144 ~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~------~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~-- 215 (306)
.-.+|..+.++..|+++|++.-+.++.+.-.... ..||.-+|-+++++-+++.....+.++.|++...+...
T Consensus 30 yv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl~alc~~I~~EA~~R~I~p~~i 109 (404)
T KOG1483|consen 30 YVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFLTALCVSILIEAIERIIEPHHI 109 (404)
T ss_pred cccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 3567899999999999999888877777655432 24777899999999999999999999999999998643
Q ss_pred --CCCCCHHHHHHHhcCCcCcccccee
Q psy14658 216 --PRGVEFTDVLNTFLDIEGVEKVHNL 240 (306)
Q Consensus 216 --p~~~~~~~i~~~i~~~~~v~~v~~~ 240 (306)
|-......+.-.+.++-|..-+++.
T Consensus 110 ~~P~~vL~vgi~gLi~Nvlg~~lfhdh 136 (404)
T KOG1483|consen 110 ENPILVLYVGIIGLISNVLGLFLFHDH 136 (404)
T ss_pred cCceeeehhhHHHHHHHHHHhheeecc
Confidence 2222333444444444444444443
No 27
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=80.09 E-value=11 Score=25.82 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=25.8
Q ss_pred ecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEE
Q psy14658 245 LSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTL 286 (306)
Q Consensus 245 ~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i 286 (306)
..++...+.+.+..+.....+.+.+++++.|+..-++.+|.|
T Consensus 31 i~~~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 31 IEGGKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp ECTCEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EECCEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 344555555444433334678899999999986558877765
No 28
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=79.65 E-value=22 Score=26.29 Aligned_cols=67 Identities=19% Similarity=0.087 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhchH---HHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCC
Q psy14658 17 KKARRKLWFASILCLVFMICEIVGGYFSGSL---AIATDAAHLLTDFASFMISLIALWVASRPATKQMPF 83 (306)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~---allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~ 83 (306)
+..++..+.++...+...+..++.+..+.=. ..+..-+....-++....++++...+.+..+.+||+
T Consensus 35 ~~vr~ha~qal~~~i~~~i~~~i~~~l~~~~~~~~~i~~~~~~~~~l~~~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 35 PFVRFHAKQALNFQITFLIISIILFILSFILIFFIGIGILLLIVLWLLSLVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeecCe
Confidence 3455555555555444444444444433222 223333444444566777888888888888888886
No 29
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=77.71 E-value=25 Score=25.75 Aligned_cols=47 Identities=11% Similarity=-0.012 Sum_probs=32.6
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCCC
Q psy14658 248 DKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNAT 294 (306)
Q Consensus 248 ~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~ 294 (306)
+...+.+.+..+.....+.+.+++++.+.+.-|+..+.|.+.....+
T Consensus 37 ~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~ 83 (99)
T TIGR02945 37 GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDPPW 83 (99)
T ss_pred CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeCCC
Confidence 55555555555544566778888999997755888888888765543
No 30
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=76.49 E-value=46 Score=28.14 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy14658 120 VFGLIVNVLMGCTLHQH 136 (306)
Q Consensus 120 ~~~l~v~~~~~~~~~~~ 136 (306)
+++++.-.+-+++.+++
T Consensus 185 iig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 185 IIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444434444444443
No 31
>COG1279 Lysine efflux permease [General function prediction only]
Probab=76.30 E-value=13 Score=31.36 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHH
Q psy14658 148 NVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIV 210 (306)
Q Consensus 148 s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~ 210 (306)
+..+.....+..+|++.-..-+.|...... ..||+.+++-+.-++++++.++..+|++.+.
T Consensus 34 ~~~l~~~~~c~i~D~~Li~~gv~G~~~li~--~~p~l~~i~~~~G~~FLl~yg~~a~~~a~~~ 94 (202)
T COG1279 34 EYVLPIALLCAISDIVLISAGVFGVGALIA--KSPWLLLIVRWGGAAFLLYYGLLALKSAPRG 94 (202)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 577888899999998887766666555443 6789999999999999999999999999884
No 32
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.51 E-value=28 Score=23.91 Aligned_cols=65 Identities=8% Similarity=0.116 Sum_probs=44.5
Q ss_pred CCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 219 VEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 219 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
-...++.+.+.+.. .++.+++...++ +.+.+.+.+.++++.+..+..+.+++.. +..+ +.++++|
T Consensus 11 Giv~~vt~~la~~~--~nI~dl~~~~~~-~~f~~~~~v~~p~~~~~~~l~~~l~~l~-~~l~---l~i~~~~ 75 (75)
T cd04870 11 GLTSALTEVLAAHG--VRILDVGQAVIH-GRLSLGILVQIPDSADSEALLKDLLFKA-HELG---LQVRFEP 75 (75)
T ss_pred CHHHHHHHHHHHCC--CCEEecccEEEc-CeeEEEEEEEcCCCCCHHHHHHHHHHHH-HHcC---ceEEEeC
Confidence 34678888887765 677788776665 6688889999988877777777665444 3344 4444443
No 33
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=67.88 E-value=21 Score=26.78 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 216 PRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 216 p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
.+.-...++.+.+++..|-..+.++.+-+.....-.+.+.|.-+.....++|++++++.-...-...++..+.-|.+.
T Consensus 13 iDSgil~~vLD~I~d~GG~F~i~~~~vG~~~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~~~~~~d~~l~~a~~d~ 90 (103)
T PF04455_consen 13 IDSGILNRVLDIIMDMGGDFEILEFDVGKSKDDTSYARLQVSAPDEEHLDEILDELHQLGAVPVEPQDAELEPAPKDG 90 (103)
T ss_dssp TTSSHHHHHHHHHHHTT-EEEEEEEE--SSTTS-EEEEEEEEESSHHHHHHHHHHHHHHHHHSCCCCEEEECESSCTT
T ss_pred echhhHHHHHHHHHhcCCCEEEEEEEeCCCCCCceeEEEEEecCCHHHHHHHHHHHHHHcCCCCCCcccEEEEcCCCC
Confidence 455567899999999999999999999765555567777777776666678888876544432345566665554444
No 34
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=67.21 E-value=27 Score=24.85 Aligned_cols=69 Identities=10% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCCCceeEEEe--eecC
Q psy14658 223 DVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFDFFEMTLQI--EEFN 292 (306)
Q Consensus 223 ~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~v~~v~i~i--~p~~ 292 (306)
.+++.++..-.-..+.++.+.+. ++...+.+|..-|.-. ....-.+++++.|++.+++.+-.|++ ++.+
T Consensus 6 ~Ire~l~k~~~~agis~IeI~Rt-~~~i~I~I~tarPg~vIG~~G~~i~~L~~~L~k~~~~~~~~i~v~~~~v~ 78 (81)
T cd02413 6 ELNEFLTRELAEDGYSGVEVRVT-PTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFNFPEGSVELYAEKVA 78 (81)
T ss_pred HHHHHHHHHHHhCCeeeEEEEEc-CCeEEEEEEeCCCceEECCCchhHHHHHHHHHHHhCCCCCeEEEEEEEcc
Confidence 34455544333467788888874 5777777777666543 23334577888888888877777777 6654
No 35
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=65.55 E-value=40 Score=26.95 Aligned_cols=43 Identities=5% Similarity=-0.103 Sum_probs=28.8
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 247 LDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 247 ~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
++...+.+.+....-...+.+.+.+++.|++. |+.++.|++.-
T Consensus 24 gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~ 66 (146)
T TIGR02159 24 GGGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSL 66 (146)
T ss_pred CCEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEee
Confidence 35555555555444445678888999999875 87777776653
No 36
>KOG1482|consensus
Probab=64.28 E-value=58 Score=30.21 Aligned_cols=73 Identities=11% Similarity=0.076 Sum_probs=59.6
Q ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q psy14658 143 VREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFK------PEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGI 215 (306)
Q Consensus 143 ~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~------~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~ 215 (306)
....+|..+.+++.|.+.|..+-+..+++++..... +||.-+|.+++++-.+.+-.....++.+++..++...
T Consensus 93 g~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~~ 171 (379)
T KOG1482|consen 93 GYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSGD 171 (379)
T ss_pred CeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcCc
Confidence 357789999999999999999888888888776541 3566688888888888887888888999999888654
No 37
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=61.41 E-value=58 Score=23.58 Aligned_cols=68 Identities=6% Similarity=0.050 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 217 RGVEFTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
++.+.+.+.+.+.+ .|.-..+++...--.+.+-..+.+++.+ ++.+. -.+++++.|...-|+.++.|.
T Consensus 15 ~evdl~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv-~D~Eg--~td~~ee~l~~vegV~sveve 83 (88)
T COG2092 15 PEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVV-EDKEG--GTDALEEALEEVEGVESVEVE 83 (88)
T ss_pred CCCCHHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEE-ccccc--CcHHHHHHHhhccCcceEEEE
Confidence 33456667777665 4444454577777777788899999999 45433 356667888776688777664
No 38
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=60.01 E-value=59 Score=23.17 Aligned_cols=69 Identities=10% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCCCceeEEEeeec
Q psy14658 222 TDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFDFFEMTLQIEEF 291 (306)
Q Consensus 222 ~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 291 (306)
..+++.+...-.-..+.++.+.+. ++...+.+|..-|.-. ....-.+++++.|++.++..++.+.+.+-
T Consensus 13 ~~Ir~fl~~~~~~agIs~IeI~r~-~~~i~V~I~t~~pg~iIGk~G~~I~~l~~~l~k~~~~~~v~I~v~ev 83 (85)
T cd02411 13 TMIDEYLEKELERAGYGGMEILRT-PLGTQITIYAERPGMVIGRGGKNIRELTEILETKFGLENPQIDVQEV 83 (85)
T ss_pred HHHHHHHHhhhhhCcccEEEEEEc-CCcEEEEEEECCCCceECCCchhHHHHHHHHHHHhCCCCceEEEEEe
Confidence 345555544222346677888664 4668888888544332 23333577788887777765677776543
No 39
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=59.81 E-value=1.2e+02 Score=26.32 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHH-
Q psy14658 95 LLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAV- 173 (306)
Q Consensus 95 i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~- 173 (306)
+-.+-+.|++.+. ....+.++++.+.+.++...+..+..- ...+++....+..|.+.|+-.++-++
T Consensus 83 lGRDvlSRli~Gt-~~t~G~allvt~~a~l~g~~lGi~AG~------------t~gl~s~~lnHilDt~lSiPsLLlAii 149 (296)
T COG4171 83 LGRDVLSRLISGT-APTVGGALLVTLAATICGGVLGIFAGA------------THGLRSAVLNHILDTLLSIPSLLLAII 149 (296)
T ss_pred chHHHHHHHHccC-ccccchHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3466788899886 444555665555555554444444321 25688888999999999987665444
Q ss_pred HHHh
Q psy14658 174 VIYF 177 (306)
Q Consensus 174 ~~~~ 177 (306)
++-+
T Consensus 150 vvaf 153 (296)
T COG4171 150 VVAF 153 (296)
T ss_pred HHHH
Confidence 4444
No 40
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=59.10 E-value=78 Score=24.14 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=45.6
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHH--
Q psy14658 13 NKNDKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEV-- 90 (306)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~-- 90 (306)
.++.+.+++.+..+++.-+.. =....+ ++.|.. =.|++=.++.+++.+.+..-. -+...|-|.-+.-.
T Consensus 2 ~~~~~~ek~tLlLaliaGl~~--n~~~s~-L~~s~V-----pFSiFPlIaLvLavy~LyQ~Y--l~~~m~eg~P~~a~ac 71 (117)
T PF07226_consen 2 TEQNRSEKKTLLLALIAGLCG--NATFSA-LFSSEV-----PFSIFPLIALVLAVYCLYQRY--LNHPMPEGTPKLALAC 71 (117)
T ss_pred CCccCCchhhHHHHHHHHHhc--cchhHH-HHhccc-----ccHHHHHHHHHHHHHHHHHHH--hcCCCCCCChHHHHHH
Confidence 445567777777666533221 112222 222211 135555566666666665432 23444556666666
Q ss_pred -HHHHHHHHHHHHhhcCCC
Q psy14658 91 -VTGILLYIAIERVITKNF 108 (306)
Q Consensus 91 -v~~~i~~~si~~l~~~~~ 108 (306)
+.+...|.++.+...|+-
T Consensus 72 FflG~f~ySA~vraqyPei 90 (117)
T PF07226_consen 72 FFLGLFGYSAFVRAQYPEI 90 (117)
T ss_pred HHHHHHHHHHHHHHhchhh
Confidence 334456888888887763
No 41
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=57.77 E-value=97 Score=24.81 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=50.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhh---HH---HHhhHHHHHHHHHHHHHHcCCCCCCCCCcch
Q psy14658 13 NKNDKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDA---AH---LLTDFASFMISLIALWVASRPATKQMPFGWY 86 (306)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa---~~---sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~ 86 (306)
...+++-.|.+.-+.+.++-+++.++++|+...+.+=-.-. .+ .+.--+..+++++.+...++ .|..||.++.
T Consensus 56 ~ty~k~~~k~l~kt~~iSF~~avLGiifgI~~qll~~WslsiM~wYWll~LlLyl~tiisLViLVf~n~-k~~~~~~~y~ 134 (161)
T PF13042_consen 56 NTYDKKFSKVLIKTNVISFNFAVLGIIFGIIHQLLGKWSLSIMMWYWLLILLLYLITIISLVILVFVNR-KNSNYSILYK 134 (161)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCccHHHH
Confidence 44566778888889999999999999999998765422211 22 22333344455555555554 6788888665
Q ss_pred HHHH
Q psy14658 87 RAEV 90 (306)
Q Consensus 87 r~e~ 90 (306)
-+-.
T Consensus 135 ~Lil 138 (161)
T PF13042_consen 135 ILIL 138 (161)
T ss_pred HHHH
Confidence 4444
No 42
>cd02412 30S_S3_KH K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=55.33 E-value=69 Score=24.07 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=43.0
Q ss_pred HHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 223 DVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 223 ~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
.|++.++..-.-..+.++.+.+. .+.+.+.+|..-|.-. ...+.++++++.|++.++...+.|.+.+..
T Consensus 37 ~IR~yL~k~~~~agis~I~I~R~-~~~i~I~I~t~rPg~vIG~~G~~i~~L~~~l~~~~~~~~~~I~V~ev~ 107 (109)
T cd02412 37 KIRKFIKKKLKKAGISRIEIERK-ADRVEVTIHTARPGIIIGKKGAGIEKLRKELQKLLGNKKVRINIVEVK 107 (109)
T ss_pred HHHHHHHHHHhhCCccEEEEEEc-CCCEEEEEEeCCCCcccCCchHHHHHHHHHHHHHhCCCceEEEEEEec
Confidence 34444444222346678888874 4667777777776544 334556788888887776456777776543
No 43
>COG2056 Predicted permease [General function prediction only]
Probab=54.80 E-value=1.8e+02 Score=27.09 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy14658 112 PTIMLYTSVFGLIVNVLMGCTL 133 (306)
Q Consensus 112 ~~~~l~~~~~~l~v~~~~~~~~ 133 (306)
-+.+.++..+++++.++.+.+.
T Consensus 190 V~~am~ip~lgMi~GLl~ai~~ 211 (444)
T COG2056 190 VPKAMWIPGLGMIVGLLLAIFV 211 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888776
No 44
>KOG3320|consensus
Probab=50.70 E-value=86 Score=25.84 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.3
Q ss_pred eecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 244 ALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 244 ~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
.+||++-.+-+.|-++.--..+.+--++.++|+++|...+|..-.+
T Consensus 53 ev~Gg~Kaivi~VP~p~lk~fqki~~~LvreleKKF~gk~Vifia~ 98 (192)
T KOG3320|consen 53 EVGGGRKAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVIFIAQ 98 (192)
T ss_pred EecCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 3455665665666555545678888899999999997677766533
No 45
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=49.61 E-value=77 Score=25.03 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHH---HHHhhHHHHhhHHHHHHHHHHHHH
Q psy14658 25 FASILCLVFMICEIVGGYFSGSLA---IATDAAHLLTDFASFMISLIALWV 72 (306)
Q Consensus 25 ~~~~~~~~~~i~~i~~g~~~~S~a---llaDa~~sl~d~~~~~~~l~~~~~ 72 (306)
+++++|++++++..+++.+..+.. -..++..-+..++..++++++-..
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~ 129 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVV 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777666644443 357788888888888777766543
No 46
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=49.07 E-value=1.3e+02 Score=27.27 Aligned_cols=53 Identities=6% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHh------cCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCC
Q psy14658 165 SFGVFVAAVVIYF------KPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPR 217 (306)
Q Consensus 165 s~~v~i~~~~~~~------~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~ 217 (306)
.++.++|+++..+ ..+.|++-++.++++++++.+.++.+.-.-..+++--.++
T Consensus 85 tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~ 143 (356)
T COG4956 85 TIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNP 143 (356)
T ss_pred HHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcch
Confidence 3444555444333 2467899999999999999999999988877777765544
No 47
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=48.38 E-value=1.2e+02 Score=24.61 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhC-CCceeEEEeeec
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKF-DFFEMTLQIEEF 291 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~-~v~~v~i~i~p~ 291 (306)
.++|.+.+.++|+| .+..+--.| +..++-+ .++... ..+++..++.+.+++.. .+.+|.|--+|.
T Consensus 56 A~~Ia~~v~~v~~V---~dA~vvVtg-~~A~Vgv--~~~~~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd 124 (158)
T TIGR02898 56 ADEIASEAAKVKGV---KDATVVITG-NYAYVGV--DLTNGLEGSVTDELKEKVAETVKSTDNRIANVYVSADPD 124 (158)
T ss_pred HHHHHHHHhcCCCC---ceEEEEEEC-CEEEEEE--EcCCCcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHH
Confidence 35566666777755 556665544 5444434 444443 46888999999998856 688888877764
No 48
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=48.00 E-value=1e+02 Score=22.29 Aligned_cols=67 Identities=6% Similarity=0.082 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCC-CHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 217 RGVEFTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGT-DAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~-~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
++.+.+++.+.+++ .++-..+.+...--++.+-..+.+.+.++.+. .. +.+++.+.+.-++.++.|.
T Consensus 15 ~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~t----d~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 15 PDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGT----EAAEESLSGIEGVESVEVT 83 (88)
T ss_pred CccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcCh----HHHHHHHhcCCCccEEEEE
Confidence 44567888888877 56666777888888888888999999997663 33 4456667665578777764
No 49
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=47.18 E-value=82 Score=21.03 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=40.1
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
..+++.+.+.+.|+|..+ +.+.| .+..-+++.++ +..++.+-+.+.|.+.-|+.++...+.
T Consensus 11 ~~~~~~~~l~~~p~V~~~-----~~vtG-~~d~~~~v~~~---d~~~l~~~i~~~l~~~~gV~~~~t~iv 71 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVEC-----YSVTG-EYDLILKVRAR---DMEELEEFIREKLRSIPGVRRTETSIV 71 (74)
T ss_dssp HHHHHHHHHHTSTTEEEE-----EEESS-SSSEEEEEEES---SHHHHHHHHHHTHHTSTTEEEEEEEEE
T ss_pred hHHHHHHHHHcCCCEEEE-----EEEeC-CCCEEEEEEEC---CHHHHHHHHHHHhhcCCCEEEEEEEEE
Confidence 478899999999977554 33443 35555677775 455555555555777668887776653
No 50
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=45.94 E-value=1.3e+02 Score=25.15 Aligned_cols=68 Identities=12% Similarity=0.025 Sum_probs=46.9
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeec-----CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALS-----LDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~-----~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
.+.++.+.+.+.. .++.+++.+..+ +..+.+.+.+.+|++.+..++.+..+ .+.+..+ +++.+||.+.
T Consensus 108 IV~~vT~~la~~~--iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~-~l~~eL~---vd~~l~~~~~ 180 (190)
T PRK11589 108 LIERFTALFDSHH--MNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFK-ALCTELN---AQGSINVVNY 180 (190)
T ss_pred HHHHHHHHHHHcC--CChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHH-HHHHHhC---ceEEEEEeec
Confidence 3467777777665 677888887543 23689999999999999888877775 4445554 4455555544
No 51
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.30 E-value=1.4e+02 Score=23.10 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCC
Q psy14658 22 KLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATK 79 (306)
Q Consensus 22 ~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~ 79 (306)
.+..+.++..++=++-+++|.+.++.....|++--+.-++..++.++..+.-.|...+
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3443444444555555666666666666668888888888888888888887765443
No 52
>PRK11056 hypothetical protein; Provisional
Probab=45.17 E-value=1.4e+02 Score=22.92 Aligned_cols=87 Identities=18% Similarity=0.280 Sum_probs=46.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHH---H
Q psy14658 15 NDKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEV---V 91 (306)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~---v 91 (306)
+.+.+++.+..+++.-+. .=....+.+ .|.. =.|++=+++.+++.+.+..-. -++..|-|.-+.-. +
T Consensus 4 ~~~~ek~tLlLaliaGl~--~ng~fs~Lf-~s~V-----pFSiFPlIaLvLavycLyQ~Y--l~~~m~eg~P~~a~acFf 73 (120)
T PRK11056 4 QSRQEKGTLLLALIAGLS--INGTFAALF-SSIV-----PFSIFPLIALVLAVYCLHQRY--LNRPMPEGLPGLAAACFF 73 (120)
T ss_pred ccccchhhHHHHHHHHHh--hchhhHHHH-cccc-----ccHHHHHHHHHHHHHHHHHHH--hcCCCCCCChHHHHHHHH
Confidence 445677777766653322 212222222 2111 145555666666666665432 24445566666666 3
Q ss_pred HHHHHHHHHHHhhcCCCcCc
Q psy14658 92 TGILLYIAIERVITKNFDIE 111 (306)
Q Consensus 92 ~~~i~~~si~~l~~~~~~~~ 111 (306)
.+...|.++.+.-.|+--.+
T Consensus 74 lG~f~ySA~vraeyPeiGSN 93 (120)
T PRK11056 74 LGVFLYSAFVRAEYPEIGSN 93 (120)
T ss_pred HHHHHHHHHHHhcCcccccc
Confidence 44567888888888874333
No 53
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.09 E-value=86 Score=21.00 Aligned_cols=56 Identities=7% Similarity=-0.021 Sum_probs=34.8
Q ss_pred CCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCC
Q psy14658 219 VEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFD 280 (306)
Q Consensus 219 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~ 280 (306)
-...++.+.+.+.. ..+.++.......+...+.+.++++.....+. +.++|++.-+
T Consensus 11 g~L~~i~~~i~~~~--~nI~~v~~~~~~~~~~~~~~~vev~~~~~l~~----i~~~L~~i~g 66 (74)
T cd04887 11 GMLGRVTTAIGEAG--GDIGAIDLVEQGRDYTVRDITVDAPSEEHAET----IVAAVRALPE 66 (74)
T ss_pred chHHHHHHHHHHcC--CcEEEEEEEEecCCEEEEEEEEEcCCHHHHHH----HHHHHhcCCC
Confidence 34678888887765 45556666654446777888888875544444 4455555434
No 54
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=45.00 E-value=2e+02 Score=24.68 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=26.8
Q ss_pred CCCcccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy14658 1 DDEEDHCHRERKNKNDKKARRKLWFASILCLVFMICEIVGGYF 43 (306)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~ 43 (306)
|...+..||++.....++--|..+..+..+++.+.+...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~ 44 (219)
T PRK10447 2 DRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV 44 (219)
T ss_pred CccccCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666633335555666666777777777777777764
No 55
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=42.20 E-value=1.3e+02 Score=21.77 Aligned_cols=67 Identities=6% Similarity=0.078 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCC-CHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 217 RGVEFTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGT-DAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~-~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
++.+.+++.+.+++ .++-....+.+.--++.+-..+.+.+.++.+. .. +.+++.+.+.-++.++.|.
T Consensus 15 ~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~t----d~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 15 PEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGT----EPVEEAFANVEGVESVEVE 83 (88)
T ss_pred CCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCc----HHHHHHHhccCCCcEEEEE
Confidence 44567888888877 55566667778777777888888888887652 33 4456666554477777764
No 56
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=42.12 E-value=2.6e+02 Score=25.25 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHhcCCcCcccccee---------EEEeec---------CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 216 PRGVEFTDVLNTFLDIEGVEKVHNL---------RIWALS---------LDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 216 p~~~~~~~i~~~i~~~~~v~~v~~~---------~~~~~~---------~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
.+++..+++.+.+++.|+|.+++-+ +-| .+ ++-+-..+.+.++++.+.++..+++++.+++
T Consensus 76 ~~~~~~~~l~~~l~~~~~V~~v~~iskeeAl~~l~~~-~g~~~~l~~l~~nPLP~si~V~l~~~~~~~~~~~~l~~~l~~ 154 (309)
T TIGR00439 76 LAQSDADTVVSLLTRDKGVENINYISREDGLAEFQSW-SGFGNLLSMLDGNPLPAVFIVTPDPAFTPAEMQAILRDNITK 154 (309)
T ss_pred CCHHHHHHHHHHHhCCCCccEEEEECHHHHHHHHHHh-cCCchhhhhcccCCCCCeEEEEeCCCCChHHHHHHHHHHHhc
Confidence 3444557888889998887765322 122 11 1222233555555555566677788888877
Q ss_pred hCCCcee
Q psy14658 278 KFDFFEM 284 (306)
Q Consensus 278 ~~~v~~v 284 (306)
..++.++
T Consensus 155 ~~gV~~v 161 (309)
T TIGR00439 155 IPGVEEV 161 (309)
T ss_pred CCCCCcc
Confidence 5566665
No 57
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=42.11 E-value=4.9e+02 Score=28.31 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=22.1
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14658 12 KNKNDKKARRKLWFASILCLVFMICEIVGGY 42 (306)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~ 42 (306)
+.++....-++++++++..+.+.++=+..|+
T Consensus 513 ~~D~~~~T~~al~~t~l~alP~pl~~~~~g~ 543 (1109)
T PRK10929 513 TQDHFSLTLRTVFWSILVASPLPVLWAALGY 543 (1109)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344455567888899888888777666666
No 58
>PRK11118 putative monooxygenase; Provisional
Probab=38.74 E-value=1.6e+02 Score=21.83 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=42.4
Q ss_pred HHHHHHhcCCcCccccceeEEEeecCC-eEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 222 TDVLNTFLDIEGVEKVHNLRIWALSLD-KAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 222 ~~i~~~i~~~~~v~~v~~~~~~~~~~~-~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
+.+.+.|.+-||.. =++|..+.+ +-..-+++ ++...+++..+++-.+||++ +|+.+|.+++=..+
T Consensus 24 ~~LA~sI~~EpGli----WKIWTen~~t~eaGGiYl-F~~e~~a~aYl~mH~aRL~~-~Gv~~v~~kiFdin 89 (100)
T PRK11118 24 KPLAESINEEPGFI----WKIWTENEKTQEAGGIYL-FEDEASAEAYLEMHTARLKN-FGVEEVRAKIFDVN 89 (100)
T ss_pred HHHHHHHhcCCCce----EEEeecCCCCcccceEEE-ECCHHHHHHHHHHHHHHHHh-cCCCeeEEEEEecc
Confidence 34555666677753 367765543 34555554 44455778888888889966 69999888765443
No 59
>COG3333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.54 E-value=3.7e+02 Score=25.92 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCCCCCCCCcchHHHH
Q psy14658 66 SLIALWVASRPATKQMPFGWYRAEV 90 (306)
Q Consensus 66 ~l~~~~~s~~~~~~~~p~G~~r~e~ 90 (306)
++.++..+||-+.+...||++.+|-
T Consensus 276 sFlsY~~ekr~sk~~eeFG~GsieG 300 (504)
T COG3333 276 SFLSYSTEKRLSKKPEEFGKGSIEG 300 (504)
T ss_pred HHHHHHHHHhhccChhhcCCCCccc
Confidence 3444445555444557899999987
No 60
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=36.59 E-value=1.4e+02 Score=20.41 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=40.0
Q ss_pred CCHHHHHHHhcCCcCccccceeEEEeec-----CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCC
Q psy14658 219 VEFTDVLNTFLDIEGVEKVHNLRIWALS-----LDKAALSAHLAVKPGTDAGLILKQASRLVHTKFD 280 (306)
Q Consensus 219 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~-----~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~ 280 (306)
-...++.+.+.+.. .++.++.....+ .+.+.+.+.+.++++.+..++.+.+++ +.++++
T Consensus 11 Giv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~-l~~~~~ 74 (81)
T cd04869 11 GIVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEE-LCDDLN 74 (81)
T ss_pred CHHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHH-HHHHhc
Confidence 34677888887755 456666665433 256788888888877777888777764 545555
No 61
>PRK10913 dipeptide transporter; Provisional
Probab=36.40 E-value=3.2e+02 Score=24.52 Aligned_cols=112 Identities=13% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHH
Q psy14658 78 TKQMPFGWYRAEVVTGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIH 157 (306)
Q Consensus 78 ~~~~p~G~~r~e~v~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~ 157 (306)
+..||||....-. +-+.+++.+. ...-..++...++++++......+..+++ ........
T Consensus 76 ~~~h~lGTD~~Gr-------Dv~~r~~~g~-~~tl~i~~~a~~l~~~iG~~lG~~ag~~~------------~~~d~~l~ 135 (300)
T PRK10913 76 SWAHILGTDDVGR-------DVLSRLMYGA-RLSLLVGCLVVVLSLVMGVILGLIAGYFG------------GLVDNIIM 135 (300)
T ss_pred CcCCcCcCCCccc-------hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------cHHHHHHH
Confidence 6789998765543 2222233332 12223344444555555554444443321 12223556
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q psy14658 158 VLGDFLQSFGVFVAAVV-IYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLM 212 (306)
Q Consensus 158 ~~~D~~~s~~v~i~~~~-~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll 212 (306)
...|++.++-.++-.++ ..+ .|..... ..+.+++.....-.+.+|.......
T Consensus 136 ~i~dv~~siP~~~l~lll~~~-~g~~~~~--~ilal~l~~~p~~ar~~r~~~l~~~ 188 (300)
T PRK10913 136 RVVDIMLALPSLLLALVLVAI-FGPSIVN--AALALTFVALPHYVRLTRAAVLVEV 188 (300)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-HcccHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888776544333 333 3432221 2233333333334455555544443
No 62
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=36.27 E-value=1.4e+02 Score=20.44 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=34.2
Q ss_pred CCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHH
Q psy14658 219 VEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQA 271 (306)
Q Consensus 219 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i 271 (306)
....++.+.+.+.. .++.+.+...++ +.+...+.++.+++ +.+++.+.+
T Consensus 14 Giv~~v~~~l~~~g--~ni~d~~~~~~~-~~f~~~~~v~~~~~-~~~~l~~~L 62 (76)
T PF13740_consen 14 GIVAAVTGVLAEHG--CNIEDSRQAVLG-GRFTLIMLVSIPED-SLERLESAL 62 (76)
T ss_dssp THHHHHHHHHHCTT---EEEEEEEEEET-TEEEEEEEEEESHH-HHHHHHHHH
T ss_pred cHHHHHHHHHHHCC--CcEEEEEEEEEc-CeEEEEEEEEeCcc-cHHHHHHHH
Confidence 34677888888876 677889988886 67888899999844 334443333
No 63
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.94 E-value=2.3e+02 Score=22.43 Aligned_cols=50 Identities=20% Similarity=0.483 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhc----------hHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCC
Q psy14658 28 ILCLVFMICEIVGGYFSG----------SLAIATDAAHLLTDFASFMISLIALWVASRPATK 79 (306)
Q Consensus 28 ~~~~~~~i~~i~~g~~~~----------S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~ 79 (306)
.+.+++.+..++.++.++ +.||..-+.-++ .+...+.+.+-|...||.|+
T Consensus 10 ~l~~Ff~~~~~vY~~~t~~~~~~~E~~Gt~aL~ls~~l~~--mig~yl~~~~rr~~~rPED~ 69 (137)
T PF12270_consen 10 GLAVFFLVVAVVYGFWTKWSGDGGEWVGTVALVLSGGLAL--MIGFYLRFTARRIGPRPEDR 69 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcchHHHHHHHHHHHH--HHHHHHHHHHhhCCCCCccc
Confidence 444566666777776665 788887776555 33333333333444455544
No 64
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=34.62 E-value=1.9e+02 Score=24.55 Aligned_cols=72 Identities=7% Similarity=0.000 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
..++++-+...-.-..+.++.+.+. ++...+.+|..-+.-. ....-.+++++.|++.++..++.|.+.+...
T Consensus 14 ~~~irefi~~~~~~AgIs~IeI~Rt-~~~i~I~I~ta~PGivIGk~G~~I~klk~~Lkk~~~~~~v~I~v~ev~~ 87 (207)
T PRK04191 14 KVMIDEYLAKELYRAGYGGMEIKKT-PLGTRITIYAERPGMVIGRGGKNIRELTEILEKKFGLENPQIDVKEVEN 87 (207)
T ss_pred HHHHHHHHHhhhhhcceeEEEEEEc-CCcEEEEEEECCCCeEECCCchhHHHHHHHHHHHhCCCceeEEEEEEeC
Confidence 3455555555333356778888764 4667777777433322 3344457777788777776667777765443
No 65
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=33.29 E-value=1.9e+02 Score=20.87 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=38.6
Q ss_pred CCCHHHHHHHhcCCc--CccccceeEEEeec---CCeEEEEEEEEeCCCC------CHHHHHHHHHHHHhhhCCC
Q psy14658 218 GVEFTDVLNTFLDIE--GVEKVHNLRIWALS---LDKAALSAHLAVKPGT------DAGLILKQASRLVHTKFDF 281 (306)
Q Consensus 218 ~~~~~~i~~~i~~~~--~v~~v~~~~~~~~~---~~~~~v~v~i~~~~~~------~~~~i~~~i~~~l~~~~~v 281 (306)
+.....+.+.+.+.. -+.++.-+-+++-. .++..+.+.+.+.... +.+++.+++.+.|.+++|+
T Consensus 17 ~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~ 91 (94)
T PF03147_consen 17 DVPFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGA 91 (94)
T ss_dssp TS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-
T ss_pred CCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCc
Confidence 334556666666533 35555555555421 3567777777775542 5688889999999888875
No 66
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=33.28 E-value=3.6e+02 Score=24.25 Aligned_cols=116 Identities=14% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCC--CCCCCCcchHHHHHHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHH
Q psy14658 75 RPA--TKQMPFGWYRAEVVTGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVR 152 (306)
Q Consensus 75 ~~~--~~~~p~G~~r~e~v~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~ 152 (306)
.|| +..||||....-. +-+.+++.+. ...-..++...+++.++......+...++ ...
T Consensus 74 ~~P~~s~~h~lGTD~~Gr-------Dv~sr~l~G~-r~SL~i~l~a~~l~~~iGi~lG~~ag~~g------------g~~ 133 (302)
T PRK15406 74 SAPDMESGHYFGTDSSGR-------DLLVRVAIGG-RISLMVGVAAALVAVVVGTLYGSLSGYLG------------GKV 133 (302)
T ss_pred CCCCccCCCCCCCCCCcc-------hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------chH
Confidence 355 5679999766533 2222333333 22233344444444444444444432221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q psy14658 153 AAFIHVLGDFLQSFGVFVAAVV-IYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLME 213 (306)
Q Consensus 153 a~~~~~~~D~~~s~~v~i~~~~-~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~ 213 (306)
........|++.++-.++-+++ ..+ .+... ....+.+++.-...-.+++|.....+.+
T Consensus 134 D~~l~~~~di~~siP~l~l~i~l~~~-~g~~~--~~~~~~l~~~~~~~~aR~vR~~~l~~~~ 192 (302)
T PRK15406 134 DSVMMRLLEILNSFPFMFFVILLVTF-FGQNI--LLIFVAIGMVSWLDMARIVRGQTLSLKR 192 (302)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-HhccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678888888776544333 333 23211 1122233333333445566666555543
No 67
>PHA02568 J baseplate assembly protein; Provisional
Probab=32.80 E-value=1.3e+02 Score=27.11 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=41.5
Q ss_pred cCCCCCCCHHHHHHHhcCCcCccccc-eeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhh
Q psy14658 213 EGIPRGVEFTDVLNTFLDIEGVEKVH-NLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTK 278 (306)
Q Consensus 213 ~~~p~~~~~~~i~~~i~~~~~v~~v~-~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~ 278 (306)
+..|+++..+++++.+.. +++.-+. .+.+..-..-.+.+++++.+.++.+...+.+.+++.+.+.
T Consensus 178 ~G~ps~~Ll~~V~~~l~~-e~vrPl~d~VtV~sa~~v~~~I~a~l~l~~g~~~~~v~~~a~~~l~~y 243 (300)
T PHA02568 178 NGTASEDLLAAVRAALNR-EDVRPVTDRVTVQSATIVPYQIRATLYLYPGPDSEVILAAAEARLQAY 243 (300)
T ss_pred CCCCCHHHHHHHHHHhcc-cccCCCCCEEEEECCEEEEEEEEEEEEEcCCCChHHHHHHHHHHHHHH
Confidence 345777788888888844 2333333 3344332223577888888888887777777777666553
No 68
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=32.78 E-value=1.8e+02 Score=31.30 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=32.7
Q ss_pred HHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 221 FTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 221 ~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
.+.|.+-+|+ +.++.++++++......+ ...+.++++++.+.++..+++++++.+
T Consensus 58 E~~Vt~plE~~l~~v~gv~~i~S~S~~~G--~s~i~v~f~~g~d~~~a~~~V~~~v~~ 113 (1037)
T PRK10555 58 ENTVTQVIEQNMTGLDNLMYMSSQSSGTG--QASVTLSFKAGTDPDEAVQQVQNQLQS 113 (1037)
T ss_pred HHHHhHHHHHHhcCCCCceEEEEEecCCC--eEEEEEEEECCCCHHHHHHHHHHHHHH
Confidence 3444444444 455556677777653123 445666777777777777777777654
No 69
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=32.29 E-value=1.9e+02 Score=20.66 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=24.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHH
Q psy14658 16 DKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLI 68 (306)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~ 68 (306)
-|..++..|++++..+++.+- -+.+ ++|=.+....-...+.+.+..++.++
T Consensus 6 vR~kN~~~w~ali~~i~l~vq-~~~~-~fg~~~~~~~~~~~i~~~v~~vl~iL 56 (84)
T PF04531_consen 6 VRFKNKAFWVALISAILLLVQ-QVGG-LFGWGADFDVLLDQISNIVNAVLTIL 56 (84)
T ss_pred hcccCHHHHHHHHHHHHHHHH-HHHH-HhcccccHHHHHHHHHHHHHHHHHHH
Confidence 355677777777665555444 3333 33433333333334444444444443
No 70
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=32.17 E-value=1.8e+02 Score=31.25 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 217 RGVEFTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
+++..+.|.+-+|+ +.++.++++++......+ ...+.++++.+.+.+....++++++.+
T Consensus 54 p~~vE~~Vt~piE~~l~~v~gi~~i~S~S~~~G--~s~I~v~f~~g~d~~~a~~~V~~~i~~ 113 (1049)
T PRK15127 54 AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTG--TVQITLTFESGTDADIAQVQVQNKLQL 113 (1049)
T ss_pred HHHHHHHhhHHHHHHhcCCCCceEEEEEecCCc--eEEEEEEEECCCChHHHHHHHHHHHHH
Confidence 33444555555554 556667777777653223 445666666777666666666666654
No 71
>PRK11670 antiporter inner membrane protein; Provisional
Probab=31.79 E-value=3e+02 Score=25.59 Aligned_cols=44 Identities=7% Similarity=-0.063 Sum_probs=30.3
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 247 LDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 247 ~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
++...+.+.+..+.....+.+.+++++.+++..++.+++|.+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (369)
T PRK11670 46 DDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSH 89 (369)
T ss_pred CCEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEee
Confidence 35555555554444446677889999999875588888887765
No 72
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=31.60 E-value=2.2e+02 Score=21.12 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=40.3
Q ss_pred HHHHHhcCCcCccccceeEEEeecC-CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeec
Q psy14658 223 DVLNTFLDIEGVEKVHNLRIWALSL-DKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEF 291 (306)
Q Consensus 223 ~i~~~i~~~~~v~~v~~~~~~~~~~-~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 291 (306)
.+.+.+.+.||... |+|.-++ +.-..-+|+- +.+.+++..+++-..+|++ +|+.+|..++=..
T Consensus 22 ~LA~sI~~ePGliw----KiWten~~t~eaGGiYLF-e~e~~A~aY~~~h~aRl~~-~Gv~~i~~kiFdv 85 (97)
T PF08803_consen 22 DLAESINQEPGLIW----KIWTENEETGEAGGIYLF-EDEASAEAYLEMHTARLAA-FGVTEIRGKIFDV 85 (97)
T ss_dssp HHHHHHTTSTTEEE----EEEEEETTTTEEEEEEEE-SSHHHHHHHHHHHHHHHGG-GTSS--EEEEEEE
T ss_pred HHHHHHhhCCCeEE----EEEEecCCCCccceEEEE-CCHHHHHHHHHHHHHHHHh-cCccceEEEEEec
Confidence 34456777887543 5565553 4466667664 4444678888888899954 6999999887543
No 73
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=31.44 E-value=79 Score=23.03 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhh
Q psy14658 247 LDKAALSAHLAVKPGTDAGLILKQASRLVHTK 278 (306)
Q Consensus 247 ~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~ 278 (306)
++...+.+.+++.|..+.+++.+.+++.+++.
T Consensus 76 p~~a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 76 PDEATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp SSEEEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 57789999999999999999999998888763
No 74
>PRK11023 outer membrane lipoprotein; Provisional
Probab=31.29 E-value=79 Score=26.41 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=43.9
Q ss_pred HhcCCCCCCCHHHHHHHhcCCcCccccce-eEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 211 LMEGIPRGVEFTDVLNTFLDIEGVEKVHN-LRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 211 Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~-~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
|.|..|.+...++..+.+.+.+||.++++ +++.. +. .+....+-..|..+++..|...-.+....|+++
T Consensus 81 L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~V~~--~~--------~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~ 150 (191)
T PRK11023 81 LTGQSPNAELSERAKQIAMGVEGVNEVYNEIRQGQ--PI--------GLGTASKDTWITTKVRSQLLTSDSVKSSNVKVT 150 (191)
T ss_pred EEEEeCCHHHHHHHHHHHhcCCCceeecceeeecc--cc--------ccccccCcHHHHHHHHHHHhcCCCCCcceEEEE
Confidence 45666777777788888888999888863 33321 11 111222445688888888876555555555555
Q ss_pred ec
Q psy14658 290 EF 291 (306)
Q Consensus 290 p~ 291 (306)
-.
T Consensus 151 t~ 152 (191)
T PRK11023 151 TE 152 (191)
T ss_pred EE
Confidence 43
No 75
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=30.91 E-value=1.3e+02 Score=19.81 Aligned_cols=46 Identities=2% Similarity=-0.018 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEE
Q psy14658 206 DIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSA 254 (306)
Q Consensus 206 ~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v 254 (306)
++.....+.+--..+.+++++.+++.|.| .+..+.+..|+.+.+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~V---~~v~V~r~~P~~l~I~V 66 (69)
T PF08478_consen 21 QALGIQKGKNLFSLDLKKIEQRLEKLPWV---KSVSVSRRFPNTLEIKV 66 (69)
T ss_dssp HHHCTTSTTTCCCSHHHHHHHCCCCTTTE---EEEEEEEETTTEEEEEE
T ss_pred HHhCcCCCCeEEEECHHHHHHHHHcCCCE---EEEEEEEeCCCEEEEEE
Confidence 33333334444455678899999998855 56667666688766655
No 76
>PF06649 DUF1161: Protein of unknown function (DUF1161); InterPro: IPR010595 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=30.61 E-value=1.1e+02 Score=19.81 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhCCCceeEEEeeecCCC
Q psy14658 266 LILKQASRLVHTKFDFFEMTLQIEEFNAT 294 (306)
Q Consensus 266 ~i~~~i~~~l~~~~~v~~v~i~i~p~~~~ 294 (306)
++.++|.++|... |+...++++.|.+.-
T Consensus 3 ~lk~eI~~KI~an-GV~~ftLeiV~nd~~ 30 (52)
T PF06649_consen 3 ELKAEIEQKIIAN-GVSSFTLEIVPNDQA 30 (52)
T ss_pred HHHHHHHHHHHHc-CCCceEEEEeeCccc
Confidence 4566777777654 899999999998763
No 77
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=30.12 E-value=2.5e+02 Score=21.34 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=32.1
Q ss_pred EEEEEEEEeCCCC-CHHHHHHHHHHHHhhhCCCceeEEEeeecCCCc
Q psy14658 250 AALSAHLAVKPGT-DAGLILKQASRLVHTKFDFFEMTLQIEEFNATM 295 (306)
Q Consensus 250 ~~v~v~i~~~~~~-~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~ 295 (306)
..+.+.... +.+ -++.+.+++++.+++..++.++.|++.-.+.+.
T Consensus 51 v~v~mtlT~-~gCP~~~~i~~~v~~al~~~~~v~~v~V~l~~~p~Wt 96 (111)
T COG2151 51 VKVKMTLTS-PGCPLAEVIADQVEAALEEIPGVEDVEVELTLSPPWT 96 (111)
T ss_pred EEEEEecCC-CCCCccHHHHHHHHHHHHhcCCcceEEEEEEEcCCCc
Confidence 333333333 334 678899999999988778999999888776543
No 78
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=29.87 E-value=1.3e+02 Score=21.03 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=22.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q psy14658 16 DKKARRKLWFASILCLVFMICEIVGGYFSGSLAIAT 51 (306)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~alla 51 (306)
++..++.....+. +.+++.++.|++++|.....
T Consensus 6 Q~~ae~l~~~il~---~~~iisfi~Gy~~q~~~~~~ 38 (76)
T PF06645_consen 6 QRLAEKLMQYILI---ISAIISFIVGYITQSFSYTF 38 (76)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444 66788889999998876553
No 79
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=29.83 E-value=2.1e+02 Score=20.52 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeecchh---hHHHHHHHHHHHhHHHH
Q psy14658 159 LGDFLQSFGVFVAAVVIYFKPEWVLVDPI---CTFLFALLVLATTFTIL 204 (306)
Q Consensus 159 ~~D~~~s~~v~i~~~~~~~~~~~~~~D~~---~si~i~~~i~~~~~~~~ 204 (306)
..|.+-+..-+++.++.++ .+|. +||+ .-++.+...+..+++.+
T Consensus 35 d~D~~fs~vgLl~g~IL~~-~gwR-ldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 35 DYDIFFSSVGLLYGLILWF-QGWR-LDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhHHHHHHHHHHHHHHHH-Hhhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566656555555555555 4665 8999 44555555555555544
No 80
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.81 E-value=1.7e+02 Score=19.43 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
..++.+.+.+ + .++.+++-++.+.+...+.+.++++.....+++ .+.|++
T Consensus 12 l~~~~~~i~~-~--~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i----~~~L~~ 61 (68)
T cd04885 12 LKKFLELLGP-P--RNITEFHYRNQGGDEARVLVGIQVPDREDLAEL----KERLEA 61 (68)
T ss_pred HHHHHHHhCC-C--CcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHH----HHHHHH
Confidence 5777777766 4 455555666544556677777777654344444 445544
No 81
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=29.60 E-value=3.2e+02 Score=29.05 Aligned_cols=29 Identities=7% Similarity=-0.001 Sum_probs=14.3
Q ss_pred eecchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q psy14658 182 VLVDPICTFLFALLVLATTFTILRDIMIVLM 212 (306)
Q Consensus 182 ~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll 212 (306)
.|.+. .+++.+|+++..+-.+-+.+..++
T Consensus 584 tr~Eg--IILLlLYiiYVvvm~~n~~i~~~~ 612 (1096)
T TIGR00927 584 AWWES--LLLLLAYALYVFTMKWNKQIELWV 612 (1096)
T ss_pred cHHHH--HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34443 344555566655555544444443
No 82
>TIGR01008 rpsC_E_A ribosomal protein S3, eukaryotic/archaeal type. This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly.
Probab=29.56 E-value=2.4e+02 Score=23.73 Aligned_cols=70 Identities=9% Similarity=0.018 Sum_probs=42.5
Q ss_pred HHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 222 TDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 222 ~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
.++++.++..-.-..+.++.+.+. ++...+.+|..-|.-. ....-.+++++.|++.++..++.|.+.+..
T Consensus 13 ~~ire~l~k~~~~agis~ieI~r~-~~~~~I~I~~~rPg~vIG~~g~~i~~l~~~l~k~~~~~~~~I~v~ev~ 84 (195)
T TIGR01008 13 TLIDEFLKKELREAGYSGVDVRVT-PLGTKVIIFAERPGLVIGRGGRRIRELTEKLQKKFGLENPQIDVEEVE 84 (195)
T ss_pred HHHHHHHHHHHHhCCeeEEEEEEc-CCcEEEEEEECCCceEECCCchHHHHHHHHHHHHhCCCceEEEEEEEe
Confidence 445555554323346778888874 5777777777666543 233345777777877676545666665443
No 83
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=29.53 E-value=2.3e+02 Score=21.37 Aligned_cols=51 Identities=12% Similarity=-0.028 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCCC-----CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEe
Q psy14658 207 IMIVLMEGIPRGV-----EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAV 258 (306)
Q Consensus 207 s~~~Ll~~~p~~~-----~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~ 258 (306)
.+..|++...+.+ ..+.|++++...|-+.+|.++.+.. .++.+.++..|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~-~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEW-EGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEE-ECCEEEEEEEEEE
Confidence 3567787733332 2356788888899999999999965 4577877777765
No 84
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=29.29 E-value=3.5e+02 Score=23.07 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCHHHHHHHhcCC-cCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Q psy14658 219 VEFTDVLNTFLDI-EGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLV 275 (306)
Q Consensus 219 ~~~~~i~~~i~~~-~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l 275 (306)
-..+.++..+++. |||.++.-+.-|. +++ .+.+.|.-+.+.-.+.+.+++++.|
T Consensus 119 gt~~dy~~~a~~~~~gV~~v~v~~~~~-~~G--~V~v~v~~~~g~~~~~l~~~V~~~i 173 (243)
T PF04865_consen 119 GTADDYEYWALSVSPGVADVKVYPNWN-GPG--TVDVYVLGANGAPSQELLAAVQAYI 173 (243)
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCC-CCC--EEEEEEccCCCCCCHHHHHHHHHHh
Confidence 3457788888887 8876665555554 444 3555555554455688889999999
No 85
>PRK09579 multidrug efflux protein; Reviewed
Probab=29.11 E-value=2.3e+02 Score=30.40 Aligned_cols=53 Identities=6% Similarity=0.062 Sum_probs=31.7
Q ss_pred HHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHh
Q psy14658 221 FTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVH 276 (306)
Q Consensus 221 ~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~ 276 (306)
.+.|.+-+|+ +.++.++++++.... .+ ...+.++++.+.+.++..+++++++.
T Consensus 60 E~~Vt~plE~~L~~v~gi~~i~S~S~-~G--~s~I~v~f~~g~d~~~a~~~v~~~v~ 113 (1017)
T PRK09579 60 QGYITQPLQQSLASAEGIDYMTSVSR-QN--FSIISIYARIGADSDRLFTELLAKAN 113 (1017)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEec-CC--eEEEEEEEECCCCHHHHHHHHHHHHH
Confidence 3444444444 555666777777763 34 45566677777666666666666664
No 86
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=28.87 E-value=2.2e+02 Score=30.51 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=26.1
Q ss_pred HHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 223 DVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 223 ~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
.+++.+.+.+ ++++++.... .+. ..++++++++.+.+...+++++++.+
T Consensus 66 piE~~l~~i~---gv~~i~S~s~-~G~--s~i~l~f~~~~d~~~a~~~v~~~v~~ 114 (1025)
T PRK10614 66 PLERSLGRIA---GVNEMTSSSS-LGS--TRIILQFDFDRDINGAARDVQAAINA 114 (1025)
T ss_pred HHHHHhcCCC---CceEEEEEec-CCe--EEEEEEEECCCChHHHHHHHHHHHHH
Confidence 3444444454 5566665542 343 44555666666655555556655553
No 87
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.28 E-value=3.6e+02 Score=22.66 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14658 158 VLGDFLQSFGVFVAAVVI 175 (306)
Q Consensus 158 ~~~D~~~s~~v~i~~~~~ 175 (306)
.++|.++...+++|.++.
T Consensus 41 TKa~TLGv~LILlgv~l~ 58 (197)
T PRK12585 41 GISNTFGVSLLLFATVGY 58 (197)
T ss_pred ccchhhhHHHHHHHHHHH
Confidence 346666666666665543
No 88
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=27.90 E-value=2.9e+02 Score=21.82 Aligned_cols=63 Identities=6% Similarity=0.057 Sum_probs=39.7
Q ss_pred CCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 219 VEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 219 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
...+++.+.+.+.|+|..++.. . | .+.+.+.+.++ +.+++.+-+.+.+.+.-||.++..++.-
T Consensus 81 ~~~~~~~~~l~~~p~V~~~~~~---t-G--~~dl~~~v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~ivl 143 (153)
T PRK11179 81 KDYPSALAKLESLDEVVEAYYT---T-G--HYSIFIKVMCR---SIDALQHVLINKIQTIDEIQSTETLISL 143 (153)
T ss_pred ccHHHHHHHHhCCCCEEEEEEc---c-c--CCCEEEEEEEC---CHHHHHHHHHHHhhcCCCeeeEEEEEEE
Confidence 4467888889999977554332 2 3 35555666666 3445545555667665588877666654
No 89
>PRK09577 multidrug efflux protein; Reviewed
Probab=27.45 E-value=2.5e+02 Score=30.17 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=32.1
Q ss_pred HHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 221 FTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 221 ~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
.+.+.+-+|+ +.++.++++++.... .+ ...+.++++++.+.+....++++++.+
T Consensus 58 E~~Vt~plE~~L~~v~gv~~i~S~S~-~G--~s~I~v~f~~g~d~~~a~~~V~~~v~~ 112 (1032)
T PRK09577 58 EESVTALIEREMNGAPGLLYTSATSS-AG--QASLSLTFKQGVNADLAAVEVQNRLKT 112 (1032)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEec-CC--eEEEEEEEECCCChHHHHHHHHHHHHH
Confidence 3444444444 445556667776653 34 566777777777766656666665553
No 90
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=26.83 E-value=57 Score=20.64 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=12.9
Q ss_pred eecchhhHHHHHHHHHH
Q psy14658 182 VLVDPICTFLFALLVLA 198 (306)
Q Consensus 182 ~~~D~~~si~i~~~i~~ 198 (306)
.++||+.+++++..-.+
T Consensus 5 r~lDP~~av~iG~~ayy 21 (47)
T PF11654_consen 5 RFLDPLFAVFIGTSAYY 21 (47)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 46999999998865443
No 91
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=26.78 E-value=30 Score=25.36 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=19.9
Q ss_pred CCCCCCCcchHHHHHHH---HH---HHHHHHHhhcCCC
Q psy14658 77 ATKQMPFGWYRAEVVTG---IL---LYIAIERVITKNF 108 (306)
Q Consensus 77 ~~~~~p~G~~r~e~v~~---~i---~~~si~~l~~~~~ 108 (306)
+|++||+|+.|---++. -+ -..++..|.++..
T Consensus 4 D~~~fPrGF~RsGdFTi~Ea~lLe~~G~~~~~L~~G~~ 41 (93)
T PF04219_consen 4 DDKNFPRGFSRSGDFTIKEAQLLEQYGHAMKALESGER 41 (93)
T ss_pred cCCCCCCccccCCcccHHHHHHHHHHHHHHHHHHcCCc
Confidence 58999999999764221 11 2445666666653
No 92
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=26.70 E-value=1.4e+02 Score=22.07 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCcchHHHHHHHHH
Q psy14658 64 MISLIALWVASRPATKQMPFGWYRAEVVTGIL 95 (306)
Q Consensus 64 ~~~l~~~~~s~~~~~~~~p~G~~r~e~v~~~i 95 (306)
...+.+.....|| ||+|.|++.+++
T Consensus 65 g~~li~~~~GmRP-------GYGr~E~~iG~i 89 (99)
T PF09877_consen 65 GAFLIGFPLGMRP-------GYGRIETVIGLI 89 (99)
T ss_pred HHHHHhhhccCCC-------CCCeehhhhhHH
Confidence 3344455555554 899999955543
No 93
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=25.92 E-value=1.9e+02 Score=23.67 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q psy14658 149 VNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEG 214 (306)
Q Consensus 149 ~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~ 214 (306)
..+....-....|.+-...+..++..... ..+++-.+.-++-++++++.+++.+++..+.....
T Consensus 25 ~~~~~~~G~~~~~~i~~~~~~~g~~~l~~--~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~ 88 (191)
T PF01810_consen 25 AGLPVALGAALGDLIYILLAVFGLSALLK--SSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSST 88 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhh
Confidence 56667777888888877766666544332 47789999999999999999999998876665543
No 94
>PRK11281 hypothetical protein; Provisional
Probab=25.80 E-value=9e+02 Score=26.40 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=16.9
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy14658 13 NKNDKKARRKLWFASILCLVFMICEIVGGY 42 (306)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~ 42 (306)
.++....-+++.++++.++...++=+..|+
T Consensus 536 ~D~~~~T~~al~~t~l~alp~~l~~~~~g~ 565 (1113)
T PRK11281 536 RDSQLHTPKAILITLLLALPVTLIFLAVGL 565 (1113)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777777776655554444444
No 95
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=25.74 E-value=1.6e+02 Score=23.60 Aligned_cols=52 Identities=13% Similarity=0.332 Sum_probs=27.1
Q ss_pred eeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhC--CCceeEEEeeec
Q psy14658 239 NLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKF--DFFEMTLQIEEF 291 (306)
Q Consensus 239 ~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~--~v~~v~i~i~p~ 291 (306)
-..+|+ |..-.+.--.+.+++..+.+...--++.-+|..| ++.+|-.+++|.
T Consensus 73 AQaVWQ-GdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~ 126 (161)
T PF09390_consen 73 AQAVWQ-GDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPE 126 (161)
T ss_dssp EEEEE--SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHHTT-SEEEE---TH
T ss_pred hhHHhc-CCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhccceEEEEeeCCHH
Confidence 345898 5454555555666666655444444555566666 799999999883
No 96
>PRK09304 arginine exporter protein; Provisional
Probab=25.45 E-value=2.7e+02 Score=23.28 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHH
Q psy14658 151 VRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDI 207 (306)
Q Consensus 151 l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s 207 (306)
+....-....|.+-...+..++..... ..|++-.+.-++-++++++.+++.+|+.
T Consensus 37 ~~~~~Gi~~g~~~~~~la~~Gl~~Ll~--~~p~~~~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 37 LMIALLCALSDLVLICAGIFGGSALLM--QSPWLLALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444567777777666666544332 5678999999999999999999999874
No 97
>PF14007 YtpI: YtpI-like protein
Probab=25.16 E-value=2.7e+02 Score=20.21 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=19.1
Q ss_pred cchhhHHHHHHHHHHHhHHHHHHHHHH
Q psy14658 184 VDPICTFLFALLVLATTFTILRDIMIV 210 (306)
Q Consensus 184 ~D~~~si~i~~~i~~~~~~~~~~s~~~ 210 (306)
.+....++++..++..|...++...+.
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r~ 80 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIRA 80 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455677778888887777777766654
No 98
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=24.20 E-value=4.9e+02 Score=22.85 Aligned_cols=17 Identities=12% Similarity=-0.167 Sum_probs=12.7
Q ss_pred cCCCCCCCCCcchHHHH
Q psy14658 74 SRPATKQMPFGWYRAEV 90 (306)
Q Consensus 74 ~~~~~~~~p~G~~r~e~ 90 (306)
..||+..||+|....-.
T Consensus 40 ~~~Ps~~h~lGTD~~Gr 56 (272)
T PRK10417 40 LLSPDAQHWLGTDHLGR 56 (272)
T ss_pred cCCCCCCCCCCCCCCCc
Confidence 35788899999776543
No 99
>PRK05783 hypothetical protein; Provisional
Probab=24.09 E-value=2.8e+02 Score=19.91 Aligned_cols=63 Identities=6% Similarity=0.029 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHH-hhhCCCceeEEEeee
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLV-HTKFDFFEMTLQIEE 290 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l-~~~~~v~~v~i~i~p 290 (306)
-+.|.+.+.+. |...+.++|+ | . .+++.+.-+...++.+..+++-++| -..-.+.+.+|.+++
T Consensus 20 G~aI~~aL~~l-g~~~V~~VRv---G-K--~iel~l~~~~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~~ 83 (84)
T PRK05783 20 GETIQRYVIER-YTGNIIEVRA---G-K--YLVFKIEANSPEEAKELALKIAREGRLYNPIVHKIVVRVRR 83 (84)
T ss_pred HHHHHHHHHHc-CCCCcceEEe---e-E--EEEEEEcCCCHHHHHHHHHHHHHhcCcCCceeEEEEEEEEe
Confidence 47788888654 3444666664 2 3 2333333332223333334443333 232235566776654
No 100
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=23.69 E-value=3.3e+02 Score=21.87 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhcC-CcCcc--ccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHH
Q psy14658 217 RGVEFTDVLNTFLD-IEGVE--KVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRL 274 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~--~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~ 274 (306)
..++.+++.+++++ +|+.. ++........-||. ..-+.+.++...+..+..+.+++.
T Consensus 18 aTED~~kV~eAL~~~~p~~~~~e~ev~~aeGhyGNp-I~il~~~l~~~~~~~~flk~i~e~ 77 (149)
T COG1325 18 ATEDEEKVLEALENFFPEAIDVEIEVTEAEGHYGNP-ITILEVRLERSREARKFLKKLREL 77 (149)
T ss_pred ccCCHHHHHHHHHHhcCcccccceEEEEeecccCCe-EEEEEEEecCcHHHHHHHHHHHHh
Confidence 45678999999999 67665 22233333222343 344677777655444444443333
No 101
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=23.43 E-value=3.5e+02 Score=29.13 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=31.6
Q ss_pred HHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 222 TDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 222 ~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
+++.+.+|+ +.++.++.+++.+....+ ...+++.++++.+.+...+++++++.+
T Consensus 59 ~~vt~plE~~l~~v~gv~~i~S~s~~~g--~s~i~v~f~~~~d~~~a~~~v~~~l~~ 113 (1044)
T TIGR00915 59 DTVTQVIEQQMNGIDGLRYMSSESDSDG--SMTITLTFEQGTDPDIAQVQVQNKLQL 113 (1044)
T ss_pred HHHHHHHHHHhcCCCCceEEEEEEcCCC--eEEEEEEEECCCChHHHHHHHHHHHHH
Confidence 444444442 455556677777652223 446677777777666656666666654
No 102
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=23.39 E-value=3e+02 Score=22.35 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHH
Q psy14658 150 NVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDI 207 (306)
Q Consensus 150 ~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s 207 (306)
.+....-....|.+-.+.+.+++..... ..+++..++.++-++++++.+++++++.
T Consensus 21 ~~~~~~G~~~g~~~~~~~~~~Gl~~l~~--~~~~~~~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 21 GVLTILGIALGDAIWIVLSLLGLAVLIS--KSVILFTVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444445566777666666555443332 4678889999999999999999999853
No 103
>PRK10633 hypothetical protein; Provisional
Probab=23.35 E-value=1.7e+02 Score=20.88 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=24.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhch
Q psy14658 13 NKNDKKARRKLWFASILCLVFMICEIVGGYFSGS 46 (306)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S 46 (306)
++|-++++|=.++++++.++..+.=.+.++..++
T Consensus 2 d~Rf~Qa~kEA~~al~L~l~y~~~W~~~aY~~~~ 35 (80)
T PRK10633 2 DTRFVQAHKEARWALGLTLLYLAAWLVAAYLPGN 35 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4566777888888888887777666666665444
No 104
>PF01390 SEA: SEA domain; InterPro: IPR000082 SEA is an extracellular domain associated with O-glycosylation []. Proteins found to contain SEA-modules include, agrin, enterokinase, 63 kDa Strongylocentrotus purpuratus (Purple sea urchin) sperm protein, perlecan (heparan sulphate proteoglycan core, mucin 1 and the cell surface antigen, 114/A10, and two functionally uncharacterised, probably extracellular, Caenorhabditis elegans proteins. Despite the functional diversity of these adhesive proteins, a common denominator seems to be their existence in heavily glycosylated environments. In addition, the better characterised proteins all contain O-glycosidic-linked carbohydrates such as heparan sulphate that contribute considerably to their molecular masses. The common module might regulate or assist binding to neighbouring carbohydrate moieties. Enterokinase, the initiator of intestinal digestion, is a mosaic protease composed of a distinctive assortment of domains []. ; PDB: 2ACM_B 1IVZ_A 2E7V_A.
Probab=23.04 E-value=3e+02 Score=19.87 Aligned_cols=55 Identities=7% Similarity=0.062 Sum_probs=34.7
Q ss_pred HHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhh
Q psy14658 223 DVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHT 277 (306)
Q Consensus 223 ~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~ 277 (306)
++.......+.-..+..++++++.++.+.++..+.+.++. ....+.+.+++.+.+
T Consensus 39 ~i~~~~~~~~~~~~~~~~~I~~f~~gsViv~~~~~f~~~~~~~~~~~~~~l~~~l~~ 95 (107)
T PF01390_consen 39 QINSVFRNSSLSPGFVGVTITSFRPGSVIVDFDVIFDPPSSAPPADIEEALQNALQQ 95 (107)
T ss_dssp HHHHHHHTSTTTTTEEEEEEEEEEETEEEEEEEEEEETTT-S-HHHHHHHHHHHHCC
T ss_pred HHHHhhccCccCCCcceEEEEEEECCCEEEEEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3444444431114556666666666779999999995553 467777777777776
No 105
>PF04865 Baseplate_J: Baseplate J-like protein; InterPro: IPR006949 The temperate bacteriophage P2 has four defined tail genes: V, J, W and I. Their order is the late gene promoter, VWJI, followed by the tail fibre genes H and G and then a transcription terminator. BAP V protein is the small spike at the tip of the tail and basal plate assembly protein J lies at the edge of the baseplate []. This family also includes a number of bacterial homologues, which are thought to have been horizontally transferred.
Probab=23.03 E-value=2.6e+02 Score=23.94 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCCCCCCHHHHHHHh--cCCcCccccceeEEEeecCCeEEEEEEEEeCCCCC-HHHHHHHHHHHHhhhC
Q psy14658 214 GIPRGVEFTDVLNTF--LDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTD-AGLILKQASRLVHTKF 279 (306)
Q Consensus 214 ~~p~~~~~~~i~~~i--~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~-~~~i~~~i~~~l~~~~ 279 (306)
..|++...+++++.+ +..-.. -.++.+.......+.+++.+.+.++.+ .+.+.+.+++.|.+.+
T Consensus 159 g~~~~~l~~~V~~~i~~~~~~p~--~~~v~v~~~~~~~v~v~~~l~~~~~~~~~~~~~~~i~~al~~y~ 225 (243)
T PF04865_consen 159 GAPSQELLAAVQAYINAEDVRPL--GDRVTVKAPTYVPVDVTATLTVYPGYDTAEVIQAAIKAALRAYF 225 (243)
T ss_pred CCCCHHHHHHHHHHhhhhccCCC--ceEEEEECCEEEEEEEEEEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 357777788888888 442211 125566543333355555655666665 4444447777776654
No 106
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=22.87 E-value=29 Score=22.86 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=22.6
Q ss_pred HhcCCCCCCCHHHHHHHhcCCcCccccce
Q psy14658 211 LMEGIPRGVEFTDVLNTFLDIEGVEKVHN 239 (306)
Q Consensus 211 Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~ 239 (306)
|.|..|..+..+++.+.+++++|+.++.+
T Consensus 30 L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 30 LSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 45667777888899999999999888764
No 107
>PRK08201 hypothetical protein; Provisional
Probab=22.61 E-value=3.2e+02 Score=25.98 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=32.7
Q ss_pred cCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 246 SLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 246 ~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
-+++..+.+.+++.|..+.+++.+++++.+.+... ..+.++++
T Consensus 318 VP~~a~~~~diR~~p~~~~e~v~~~i~~~l~~~~~-~~~~v~~~ 360 (456)
T PRK08201 318 IPAEAHAKITCRLVPDQDPQEILDLIEAHLQAHTP-AGVRVTIR 360 (456)
T ss_pred ECcceEEEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEE
Confidence 36789999999999999999999999999876421 23444443
No 108
>KOG0144|consensus
Probab=22.35 E-value=1.8e+02 Score=27.61 Aligned_cols=86 Identities=13% Similarity=0.128 Sum_probs=58.9
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhh--CCCce
Q psy14658 206 DIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTK--FDFFE 283 (306)
Q Consensus 206 ~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~--~~v~~ 283 (306)
++++..++..|..-..+++++..+....|.++.-+|=+..+.++ ...-|......++++- .+.|... ++-.+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~--gcCFv~~~trk~a~~a----~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSK--GCCFVKYYTRKEADEA----INALHNQKTLPGMH 106 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCccc--ceEEEEeccHHHHHHH----HHHhhcccccCCCC
Confidence 45677778888888889999999999989888877776654443 3444555555455554 3444443 34457
Q ss_pred eEEEeeecCCCccc
Q psy14658 284 MTLQIEEFNATMEA 297 (306)
Q Consensus 284 v~i~i~p~~~~~~~ 297 (306)
--|++.|.+.+.+.
T Consensus 107 ~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 107 HPVQVKYADGERER 120 (510)
T ss_pred cceeecccchhhhc
Confidence 77888888876655
No 109
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=22.26 E-value=2.6e+02 Score=19.01 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=39.5
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeec-CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCcee
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALS-LDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEM 284 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~-~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v 284 (306)
...+|.+.+.+.. ..+.++++.... ++...+.+.+.++...+ .+++-++|++.-+|.+|
T Consensus 19 lL~dI~~~i~~~~--~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~----L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 19 LLADITSVISENG--VNIRSINARTNKDDGTARITLTVEVKDLEH----LNQIIRKLRQIPGVISV 78 (80)
T ss_dssp HHHHHHHHHHCSS--SEEEEEEEEE--ETTEEEEEEEEEESSHHH----HHHHHHHHCTSTTEEEE
T ss_pred HHHHHHHHHHHCC--CCeEEEEeEEeccCCEEEEEEEEEECCHHH----HHHHHHHHHCCCCeeEE
Confidence 4677888887765 677788887753 57899999999974323 34445666665566554
No 110
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=21.92 E-value=5.3e+02 Score=22.37 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=38.4
Q ss_pred CCCCCCCCCcchHHHH-HHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHH
Q psy14658 75 RPATKQMPFGWYRAEV-VTGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRA 153 (306)
Q Consensus 75 ~~~~~~~p~G~~r~e~-v~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a 153 (306)
.||+..||+|..+.-. +.. +++.+. ...-..++...+++.++.....+...+++ ..+ .
T Consensus 36 ~~P~~~~~lGTd~~Grdv~~--------~l~~g~-~~TL~ia~~~~~i~~~ig~~lG~~ag~~~-----------~~~-~ 94 (258)
T TIGR02790 36 LGPSMEYWLGTDHLGRCIFS--------RLIFGA-RVSLGSALLVLGLVLTIGLLIGGLAGYIG-----------GRV-D 94 (258)
T ss_pred CCCCCCCCCCCCCCcchHHH--------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------cHH-H
Confidence 5789999999655443 211 122211 11223334444444554444444443221 111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14658 154 AFIHVLGDFLQSFGVFVAAVV 174 (306)
Q Consensus 154 ~~~~~~~D~~~s~~v~i~~~~ 174 (306)
.......|.+.++-.++-.++
T Consensus 95 ~~~~~~~~~~~~iP~l~l~l~ 115 (258)
T TIGR02790 95 EAIMRVCDVFLSFPTIILSLA 115 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 345567788888766544333
No 111
>PF11062 DUF2863: Protein of unknown function (DUF2863); InterPro: IPR021292 This bacterial family of proteins have no known function.
Probab=21.91 E-value=49 Score=30.89 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhCCCceeEEEeeecCCCcccCCccCCCC
Q psy14658 264 AGLILKQASRLVHTKFDFFEMTLQIEEFNATMEACDQCQSPA 305 (306)
Q Consensus 264 ~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~~~~~~~~~~ 305 (306)
.....++|...|++ .||.++..+.+ ....+-|+-|++|-
T Consensus 336 ~~~~~~~I~a~Lre-~GV~di~~~~~--~f~~E~CdDCGaPl 374 (398)
T PF11062_consen 336 NPDPLEEIEALLRE-CGVTDIRRHAE--RFPPEFCDDCGAPL 374 (398)
T ss_pred CCCcHHHHHHHHHH-cCcHHHHhhhc--cCCchhcccCCCCC
Confidence 34567788877765 69998888665 45568999999983
No 112
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=21.53 E-value=3.9e+02 Score=28.78 Aligned_cols=53 Identities=4% Similarity=-0.017 Sum_probs=29.0
Q ss_pred HHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhh
Q psy14658 222 TDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHT 277 (306)
Q Consensus 222 ~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~ 277 (306)
+.+.+-+|+ +.++.++++++.... ++. ..+.++++.+.+.++..+++++++.+
T Consensus 70 ~~Vt~piE~~l~~v~gv~~i~S~S~-~G~--s~i~v~f~~g~d~~~a~~ev~~~i~~ 123 (1040)
T PRK10503 70 SAVTAPLERQFGQMSGLKQMSSQSS-GGA--SVITLQFQLTLPLDVAEQEVQAAINA 123 (1040)
T ss_pred HHHHHHHHHHhcCCCCccEEEEEec-CCe--EEEEEEEECCCChHHHHHHHHHHHHH
Confidence 334444444 445556677777764 354 44555556655555555556655553
No 113
>TIGR00948 2a75 L-lysine exporter.
Probab=21.53 E-value=4.3e+02 Score=21.28 Aligned_cols=57 Identities=11% Similarity=0.027 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHH
Q psy14658 150 NVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIM 208 (306)
Q Consensus 150 ~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~ 208 (306)
.+.+..=+...|.+-.+.+..++..... ..|++=.+.-++-++++++.+++.+|...
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~--~~p~~~~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLA--ASPILLAVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666777777777766666543332 45678888999999999999999999864
No 114
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=21.38 E-value=2.5e+02 Score=18.47 Aligned_cols=10 Identities=0% Similarity=0.175 Sum_probs=4.2
Q ss_pred chhhhhhHHH
Q psy14658 15 NDKKARRKLW 24 (306)
Q Consensus 15 ~~~~~~~~l~ 24 (306)
+.+.+.|...
T Consensus 13 ~k~~E~~~fl 22 (56)
T PF06796_consen 13 TKRSELKAFL 22 (56)
T ss_pred hhHHHHHHHH
Confidence 3344444443
No 115
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=21.17 E-value=1.7e+02 Score=23.56 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=31.4
Q ss_pred eeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhC--CCceeEEEeeecC
Q psy14658 239 NLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKF--DFFEMTLQIEEFN 292 (306)
Q Consensus 239 ~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~--~v~~v~i~i~p~~ 292 (306)
.+.++.+ |.-+.++.+.+|+.+. ..-..+++.+++.+ |=.+++|++++..
T Consensus 20 ~vEikSv--N~R~Ldi~~rlP~~l~--~lE~~ir~~i~~~l~RGkV~v~i~~~~~~ 71 (159)
T PF03755_consen 20 SVEIKSV--NHRFLDISIRLPRELS--SLEPEIRKLIRKKLSRGKVEVSIRVERSS 71 (159)
T ss_pred EEEEEec--ccCceeeEEeCCHHHH--HHHHHHHHHHHHhcccceEEEEEEEEECc
Confidence 4455655 3457788888887753 22334455555554 6668888888776
No 116
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=2.8e+02 Score=24.08 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=43.4
Q ss_pred HHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCCCceeEEEeeec
Q psy14658 222 TDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFDFFEMTLQIEEF 291 (306)
Q Consensus 222 ~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~v~~v~i~i~p~ 291 (306)
.+|++-++.-.....+.++.+... +....+.+|..=|.-. .-..-++++++.|++.++...+.|.++..
T Consensus 26 ~kIre~l~k~l~~Ag~s~veIeR~-~~~~~V~I~aarPg~VIGk~G~~I~~L~~~l~k~~g~~~v~I~i~EV 96 (233)
T COG0092 26 LKIREFLEKELSNAGISGVEIERT-PKGTRVTIHAARPGLVIGKKGSNIEKLRKELEKLFGKENVQINIEEV 96 (233)
T ss_pred HHHHHHHHHHHHhCCcceEEEEec-CCceEEEEEeCCCcceEcCCCccHHHHHHHHHHHhCCCCceEEEEEc
Confidence 356666655444467788888875 6777777776555443 23334567788888888775555555543
No 117
>KOG0129|consensus
Probab=20.86 E-value=1.1e+02 Score=29.70 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCC------------CHHHHHHHHHHHHhhhC-CCceeEEEeeecCCCcccCCccCC
Q psy14658 251 ALSAHLAVKPGT------------DAGLILKQASRLVHTKF-DFFEMTLQIEEFNATMEACDQCQS 303 (306)
Q Consensus 251 ~v~v~i~~~~~~------------~~~~i~~~i~~~l~~~~-~v~~v~i~i~p~~~~~~~~~~~~~ 303 (306)
++++.|..||+. +-+.....|..+.-+.. +-.+=-|||+|+--+.--|+.|+.
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~eDq~CdeC~g 463 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVMEDQLCDECGG 463 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeecceeccccchhhhcC
Confidence 556666666553 34667777777766654 333447899998877778999987
No 118
>PRK11027 hypothetical protein; Provisional
Probab=20.49 E-value=48 Score=25.21 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=19.8
Q ss_pred CCCCCCCcchHHHHHHH---HH---HHHHHHHhhcCC
Q psy14658 77 ATKQMPFGWYRAEVVTG---IL---LYIAIERVITKN 107 (306)
Q Consensus 77 ~~~~~p~G~~r~e~v~~---~i---~~~si~~l~~~~ 107 (306)
.+++||+|+.|-.-++. -+ -..++..|.++.
T Consensus 13 D~knfPrGF~RsGdFTi~Ea~lLe~yG~~m~~L~~G~ 49 (112)
T PRK11027 13 DDKNYPRGFSRSGDFTIKEAQLLERYGYAMNALDLGK 49 (112)
T ss_pred CCCCCCCCcccCCCcCHHHHHHHHHHHHHHHHHHcCC
Confidence 59999999999774221 12 244566666655
No 119
>PRK11380 hypothetical protein; Provisional
Probab=20.35 E-value=4.6e+02 Score=24.23 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=0.0
Q ss_pred cCCCCCCCCC-cchH----HHH----------------HHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHH
Q psy14658 74 SRPATKQMPF-GWYR----AEV----------------VTGILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCT 132 (306)
Q Consensus 74 ~~~~~~~~p~-G~~r----~e~----------------v~~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~ 132 (306)
..|.+++||+ ||.- +|- ++.++-+.-+...+.+...++....+++...+.++.++..+.
T Consensus 8 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 87 (353)
T PRK11380 8 NHPGSEKYPVNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGYLLLITAGCSFLYLLIMLG 87 (353)
T ss_pred cCCCcccCCcchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy14658 133 L 133 (306)
Q Consensus 133 ~ 133 (306)
+
T Consensus 88 ~ 88 (353)
T PRK11380 88 L 88 (353)
T ss_pred H
Done!