Query psy14658
Match_columns 306
No_of_seqs 128 out of 1224
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:20:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 4.8E-54 1.6E-58 387.0 13.8 273 16-297 8-295 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 7.5E-54 2.6E-58 382.3 13.8 266 19-293 2-282 (283)
3 3byp_A CZRB protein; membrane 99.5 1.7E-13 5.8E-18 101.1 7.7 82 210-292 1-87 (94)
4 2zzt_A Putative uncharacterize 99.4 8.7E-13 3E-17 99.6 7.7 81 212-293 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 96.6 0.0034 1.2E-07 54.9 6.7 93 119-217 6-104 (283)
6 3j1z_P YIIP, cation efflux fam 96.6 0.0044 1.5E-07 54.9 7.3 93 119-217 15-113 (306)
7 3cq1_A Putative uncharacterize 87.7 2.3 8E-05 30.6 7.4 51 247-297 40-90 (103)
8 1uwd_A Hypothetical protein TM 86.6 3.2 0.00011 29.9 7.6 49 248-296 42-90 (103)
9 3lno_A Putative uncharacterize 84.4 3.5 0.00012 30.0 7.0 50 248-297 44-94 (108)
10 3lax_A Phenylacetate-coenzyme 60.0 42 0.0014 23.6 8.6 68 221-290 16-88 (109)
11 3mgj_A Uncharacterized protein 58.4 17 0.00059 26.8 5.0 79 214-293 11-90 (118)
12 3gxs_A Phenylacetate-coenzyme 48.1 69 0.0024 22.5 8.9 67 221-290 16-88 (109)
13 2cvi_A 75AA long hypothetical 38.8 84 0.0029 20.8 6.3 64 220-292 14-77 (83)
14 3bpd_A Uncharacterized protein 33.0 1.3E+02 0.0043 21.3 5.9 63 216-285 16-80 (100)
15 2cg4_A Regulatory protein ASNC 32.1 85 0.0029 23.5 5.6 61 220-289 81-141 (152)
16 2yy3_A Elongation factor 1-bet 32.0 1.3E+02 0.0044 20.9 6.7 67 217-287 17-86 (91)
17 3eml_A Human adenosine A2A rec 30.5 2.8E+02 0.0096 24.4 10.7 64 115-187 28-91 (488)
18 1wh9_A 40S ribosomal protein S 30.3 88 0.003 21.8 4.8 77 216-293 4-84 (92)
19 3uon_A Human M2 muscarinic ace 29.8 2.8E+02 0.0097 24.2 11.0 52 116-174 31-82 (467)
20 2zbc_A 83AA long hypothetical 29.8 1.2E+02 0.004 19.8 6.3 61 220-289 14-74 (83)
21 3vw7_A Proteinase-activated re 28.0 3.1E+02 0.011 24.1 10.1 46 115-167 27-72 (484)
22 1zpv_A ACT domain protein; str 27.8 1.4E+02 0.0046 19.9 8.8 66 220-292 18-83 (91)
23 3rze_A Histamine H1 receptor, 27.6 3E+02 0.01 23.9 11.4 55 113-174 13-67 (452)
24 4dkl_A MU-type opioid receptor 27.4 3.1E+02 0.011 23.9 11.8 46 115-167 24-69 (464)
25 2jsx_A Protein NAPD; TAT, proo 25.6 1.7E+02 0.0059 20.3 9.1 65 219-293 17-81 (95)
26 2vv5_A MSCS, small-conductance 24.3 2.1E+02 0.0073 24.1 7.3 67 224-290 205-279 (286)
27 2rh1_A Beta-2-adrenergic recep 23.7 4E+02 0.014 23.9 10.9 46 116-168 48-93 (500)
28 1gh8_A Translation elongation 23.6 1.9E+02 0.0063 20.0 7.1 67 217-287 15-83 (89)
29 2z73_A Rhodopsin; visual pigme 23.5 3.7E+02 0.013 23.5 10.3 46 116-168 42-87 (448)
30 3odu_A C-X-C chemokine recepto 23.5 3.8E+02 0.013 23.6 10.3 64 115-187 55-118 (502)
31 2dbb_A Putative HTH-type trans 23.0 1.9E+02 0.0064 21.4 6.1 62 220-289 81-142 (151)
32 3u5c_H RP30, RP40, 40S ribosom 22.1 2.3E+02 0.0079 22.5 6.3 43 245-287 51-93 (190)
33 2cyy_A Putative HTH-type trans 21.8 2.4E+02 0.0083 20.8 6.5 63 218-290 77-139 (151)
34 3eb7_A Insecticidal delta-endo 21.1 1.8E+02 0.0062 27.5 6.7 69 161-231 5-78 (589)
35 4ea3_A Fusion protein of nocic 20.7 4.2E+02 0.015 23.1 10.3 44 115-165 132-175 (434)
36 3sn6_R Lysozyme, beta-2 adrene 20.3 4.7E+02 0.016 23.5 9.7 47 116-169 190-236 (514)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=4.8e-54 Score=386.98 Aligned_cols=273 Identities=17% Similarity=0.199 Sum_probs=251.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH---
Q psy14658 16 DKKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT--- 92 (306)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~--- 92 (306)
....|++.++++++|++++++|+++|+++||.||++||+||++|+++.++++++.+.++||||++|||||+|+|+++
T Consensus 8 ~~~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~ 87 (306)
T 3j1z_P 8 DFWVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALA 87 (306)
T ss_dssp TCCSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred ---------HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHH
Q psy14658 93 ---------GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFL 163 (306)
Q Consensus 93 ---------~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~ 163 (306)
++++++++.++++|++...+.+++++++++++++..++++.++. .++.+|.+++++++|.+.|++
T Consensus 88 ~~~~l~~~~~~i~~eai~~l~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~s~~l~a~~~h~~~D~l 161 (306)
T 3j1z_P 88 QSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQKRA------LAATNSTVVEADSLHYKSDLF 161 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCGGGTTCCHHHHHHHHHHHHHHHHHHHHH------HTTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhheecCCCccccccchhhhhhHhhhhHHHHHHHHHh------ccccCCHHHHHHHHhhcchhh
Confidence 34679999999999877777788889999999999999998876 356789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEE
Q psy14658 164 QSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIW 243 (306)
Q Consensus 164 ~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~ 243 (306)
+|+++++++++.++ ||+|+||++++++++++++.+++++|++...|||++|++++.++|++.+++.|+|.++|++|+|
T Consensus 162 ~s~~vli~~~~~~~--g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~ 239 (306)
T 3j1z_P 162 LNAAVLLALVLSQY--GWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTR 239 (306)
T ss_dssp CCTTCCCTTSSCCS--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCE
T ss_pred hhhHHHHHHHHHHh--CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEE
Confidence 99999998777654 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCCCceeEEEeeecCCCccc
Q psy14658 244 ALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFDFFEMTLQIEEFNATMEA 297 (306)
Q Consensus 244 ~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~~ 297 (306)
+.| +++.+++|+++|+++ +++++.++++++|++++++.+++||+||++.++-+
T Consensus 240 ~~G-~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~~ePt~ 295 (306)
T 3j1z_P 240 QAG-KTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQVEPTT 295 (306)
T ss_dssp EET-TEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETTSCCCC
T ss_pred EEC-CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCCCCCCc
Confidence 987 678899999999997 68999999999999999999999999999765433
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=7.5e-54 Score=382.33 Aligned_cols=266 Identities=17% Similarity=0.293 Sum_probs=247.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhchHHHHHhhHHHHhhHHHHHHHHHHHHHHcCCCCCCCCCcchHHHHHH------
Q psy14658 19 ARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRPATKQMPFGWYRAEVVT------ 92 (306)
Q Consensus 19 ~~~~l~~~~~~~~~~~i~~i~~g~~~~S~allaDa~~sl~d~~~~~~~l~~~~~s~~~~~~~~p~G~~r~e~v~------ 92 (306)
.+|++++++++|++++++|+++|+++||.||++||+||++|+++.++++++.+.++||||++|||||+|+|+++
T Consensus 2 ~~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~ 81 (283)
T 3h90_A 2 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSM 81 (283)
T ss_dssp CCTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999933
Q ss_pred ------HHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHH
Q psy14658 93 ------GILLYIAIERVITKNFDIEPTIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSF 166 (306)
Q Consensus 93 ------~~i~~~si~~l~~~~~~~~~~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~ 166 (306)
.+++++|+.++++|++...+.++++++++++++|..+++++++. .++.+|++++++++|++.|+++|+
T Consensus 82 ~l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~~------~~~~~s~~l~a~~~h~~~D~~~s~ 155 (283)
T 3h90_A 82 FISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRWV------VRRTQSQAVRADMLHYQSDVMMNG 155 (283)
T ss_dssp HHHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHHH------HHHSCCHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 34679999999999876666677889999999999999998876 356789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeecchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCCcCccccceeEEEeec
Q psy14658 167 GVFVAAVVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALS 246 (306)
Q Consensus 167 ~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~ 246 (306)
++++|+.+. + +||+|+||++++++++++++.+++++|++...|+|++|+++..+++++.+++.|+|.++|++|+|+.|
T Consensus 156 ~vli~~~~~-~-~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~G 233 (283)
T 3h90_A 156 AILLALGLS-W-YGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSG 233 (283)
T ss_dssp CSCSSSCSC-S-TTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEET
T ss_pred HHHHHHHHH-H-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEEC
Confidence 999987774 3 59999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 247 LDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 247 ~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
+.+.+++|+.+++++ +.+++.++++++|+++++..+++||+||++.
T Consensus 234 -~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep~~~ 282 (283)
T 3h90_A 234 -PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDPCSV 282 (283)
T ss_dssp -TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEECSCC
T ss_pred -CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 578999999999996 6799999999999999988999999999864
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.45 E-value=1.7e-13 Score=101.10 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=70.9
Q ss_pred HHhcCCCCCCCHHHHHHHhcCC--cCccccceeEEEeecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCCCcee
Q psy14658 210 VLMEGIPRGVEFTDVLNTFLDI--EGVEKVHNLRIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFDFFEM 284 (306)
Q Consensus 210 ~Ll~~~p~~~~~~~i~~~i~~~--~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~v~~v 284 (306)
.|||++|+++..++|++.+++. |||.++|++|+|++| +.+++++|+.+++++ +++++.+++++.|+++|++.++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g-~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~~v 79 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAG-PRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQA 79 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEET-TEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEEE
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEEC-CcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 4899999999999999999999 999999999999987 569999999999886 5689999999999999987799
Q ss_pred EEEeeecC
Q psy14658 285 TLQIEEFN 292 (306)
Q Consensus 285 ~i~i~p~~ 292 (306)
+||+||..
T Consensus 80 tIh~ep~~ 87 (94)
T 3byp_A 80 TIHVEPEG 87 (94)
T ss_dssp EEEEEECC
T ss_pred EEEeCCCC
Confidence 99999853
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.38 E-value=8.7e-13 Score=99.58 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=70.8
Q ss_pred hcCCCCCC--CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhhCC-CceeE
Q psy14658 212 MEGIPRGV--EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKFD-FFEMT 285 (306)
Q Consensus 212 l~~~p~~~--~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~~~-v~~v~ 285 (306)
||++|+++ ..++|++.+++.|||.+++++++|+.| +.++++++|.+++++ +++++.++++++|++.|+ +.+++
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G-~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVG-TKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECSC-C-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEEC-CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 57788888 899999999999999999999999976 678999999999986 567899999999999997 89999
Q ss_pred EEeeecCC
Q psy14658 286 LQIEEFNA 293 (306)
Q Consensus 286 i~i~p~~~ 293 (306)
||+||...
T Consensus 80 IhvEp~~~ 87 (107)
T 2zzt_A 80 IHVEPLGN 87 (107)
T ss_dssp EEEEETTC
T ss_pred EEEecCCC
Confidence 99999765
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=96.62 E-value=0.0034 Score=54.92 Aligned_cols=93 Identities=10% Similarity=0.031 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeecchhhHHHH
Q psy14658 119 SVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFK------PEWVLVDPICTFLF 192 (306)
Q Consensus 119 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~------~~~~~~D~~~si~i 192 (306)
..+++++|+++.....-. ....+|..+.+++.|.+.|.++++.++++....... .|+.-++++++++.
T Consensus 6 ~~~~~~~n~~l~~~k~~~------g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~ 79 (283)
T 3h90_A 6 AIAATAMASLLLLIKIFA------WWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQ 79 (283)
T ss_dssp HHHHHHHHHTTHHHHHHS------SCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHH
Confidence 456777777777665544 346789999999999999999999999998887652 24556999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCC
Q psy14658 193 ALLVLATTFTILRDIMIVLMEGIPR 217 (306)
Q Consensus 193 ~~~i~~~~~~~~~~s~~~Ll~~~p~ 217 (306)
+++++..+..++++++..|+...+.
T Consensus 80 ~~~l~~~~~~i~~eai~~l~~~~~~ 104 (283)
T 3h90_A 80 SMFISGSALFLFLTGIQHLISPTPM 104 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999976543
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=96.59 E-value=0.0044 Score=54.88 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCeecchhhHHHH
Q psy14658 119 SVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFK------PEWVLVDPICTFLF 192 (306)
Q Consensus 119 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~------~~~~~~D~~~si~i 192 (306)
..+++++|+++.....-. ...++|..+.+++.|.+.|+++++.++++....... .|+.-++++++++.
T Consensus 15 ~~~si~~n~~l~~~k~~a------g~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~ 88 (306)
T 3j1z_P 15 SRASVATALTLITIKLLA------WLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQ 88 (306)
T ss_dssp HHHHHHHHHHHTHHHHHT------CTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHH
Confidence 345566666665554333 245689999999999999999999999998887542 25556999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCC
Q psy14658 193 ALLVLATTFTILRDIMIVLMEGIPR 217 (306)
Q Consensus 193 ~~~i~~~~~~~~~~s~~~Ll~~~p~ 217 (306)
+++++..+..++++++..|+...+.
T Consensus 89 ~~~l~~~~~~i~~eai~~l~~p~~~ 113 (306)
T 3j1z_P 89 SAFIMGSAFLLLFYGGERLLNPSPV 113 (306)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTTCCG
T ss_pred HHHHHHHHHHHHHHhhhheecCCCc
Confidence 9999999999999999999986553
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=87.65 E-value=2.3 Score=30.60 Aligned_cols=51 Identities=8% Similarity=-0.100 Sum_probs=33.7
Q ss_pred CCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCCCccc
Q psy14658 247 LDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNATMEA 297 (306)
Q Consensus 247 ~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~~ 297 (306)
++...+.+.+..+.-...+.+.+++++.|++.-|+.++.|++...+.+.+.
T Consensus 40 ~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~~p~W~~~ 90 (103)
T 3cq1_A 40 PPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTFEPPWTLA 90 (103)
T ss_dssp TTEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECCSSCCCGG
T ss_pred CCEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEecCCCCChH
Confidence 354444444433322356888999999998655899999988877665543
No 8
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=86.61 E-value=3.2 Score=29.87 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=34.3
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCCCcc
Q psy14658 248 DKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNATME 296 (306)
Q Consensus 248 ~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~~~~ 296 (306)
+...+.+.+..+.-...+.+.+++++.|++.-|+.++.|++...+.+.+
T Consensus 42 ~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~~~p~W~~ 90 (103)
T 1uwd_A 42 NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTFDPPWTP 90 (103)
T ss_dssp CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECCSSCCCG
T ss_pred CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCh
Confidence 5555555554433336788999999999875589999998887766554
No 9
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=84.41 E-value=3.5 Score=30.00 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=35.9
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHH-hhhCCCceeEEEeeecCCCccc
Q psy14658 248 DKAALSAHLAVKPGTDAGLILKQASRLV-HTKFDFFEMTLQIEEFNATMEA 297 (306)
Q Consensus 248 ~~~~v~v~i~~~~~~~~~~i~~~i~~~l-~~~~~v~~v~i~i~p~~~~~~~ 297 (306)
+...+.+.+..+.-...+.+.+.+++.| ++.-|+..+.|++...+.+.+.
T Consensus 44 ~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~l~~~p~W~~~ 94 (108)
T 3lno_A 44 NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVNVVWNPPWSKE 94 (108)
T ss_dssp CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEEECCSSCCCGG
T ss_pred CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCChH
Confidence 5555555555544346788999999999 5655899999999877765543
No 10
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=60.04 E-value=42 Score=23.61 Aligned_cols=68 Identities=3% Similarity=0.037 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC-----CHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT-----DAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~-----~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
..+|.+.+.+.|+|....-+-+..-+ ..-...+.+...+.. +.+.+.+++++.+++.+++. ..|++.+
T Consensus 16 P~eIE~vl~~~p~v~~~~vv~v~~~~-~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~-~~v~~v~ 88 (109)
T 3lax_A 16 PIQIETILLQFKELGSDYLITLETAE-SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVT-PRVKLVP 88 (109)
T ss_dssp HHHHHHHHHTCTTEEEEEEEEEEEET-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred HHHHHHHHHhCCCcccceEEEEeccc-cceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCc-cceEEEc
Confidence 46788899999998776666555433 334555666666553 23567788888888877764 4555554
No 11
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=58.45 E-value=17 Score=26.79 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=52.6
Q ss_pred CCCCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhC-CCceeEEEeeecC
Q psy14658 214 GIPRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKF-DFFEMTLQIEEFN 292 (306)
Q Consensus 214 ~~p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~-~v~~v~i~i~p~~ 292 (306)
--.+.-...++.+.+++..|-.++.++.+-+-....-.+.+.|.-+.+...++|+++++ .+-... ...++..+.-|.+
T Consensus 11 HLiDSgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~d~e~L~~Il~~L~-~lGA~~~~~~da~l~~a~~d 89 (118)
T 3mgj_A 11 HIIDSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGRDERHVDEILNELR-DLGAEIPEIEEVELQPAEKD 89 (118)
T ss_dssp CCTTSSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEESSHHHHHHHHHHHH-HHHHHCTTEEEEEECCSSSC
T ss_pred EeechhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecCCHHHHHHHHHHHH-HcCCcCCCCCCceEEEcccc
Confidence 33455667899999999999999999998765555567777777775555677777665 333333 4445555444444
Q ss_pred C
Q psy14658 293 A 293 (306)
Q Consensus 293 ~ 293 (306)
.
T Consensus 90 g 90 (118)
T 3mgj_A 90 M 90 (118)
T ss_dssp C
T ss_pred C
Confidence 3
No 12
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=48.08 E-value=69 Score=22.53 Aligned_cols=67 Identities=3% Similarity=0.061 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC------CHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 221 FTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT------DAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 221 ~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~------~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
..+|.+.+.+.|+|.....+-+..-+ +.-.+.+.+++ ++. +.+++.+.+++.+.+.+++. ..|++.+
T Consensus 16 P~eIE~~l~~~p~v~~~~~v~v~~~~-~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~v~~v~ 88 (109)
T 3gxs_A 16 PIQIETILLQFKELGSDYLITLETAE-SNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEILVT-PRVKLVP 88 (109)
T ss_dssp HHHHHHHHHTCTTEEEEEEEEEEEET-TEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHSSC-CEEEEEC
T ss_pred HHHHHHHHHhCCCcCCcEEEEEEcCC-CceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhCCc-eEEEEEC
Confidence 46788899999988765555554433 33344556666 432 34678889999998888765 3666555
No 13
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=38.80 E-value=84 Score=20.81 Aligned_cols=64 Identities=8% Similarity=0.085 Sum_probs=40.3
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
..+++.+.+.+.|+|..+ +.+.|. +..-+.+.++ +.+++.+-+.++|.+.-|+..+...+.-.+
T Consensus 14 ~~~~~~~~l~~~peV~e~-----~~vtG~-~D~ll~v~~~---d~~~l~~~i~~~l~~~~gV~~~~T~ivl~~ 77 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEA-----YVVYGE-YDLIVKVETD---TLKDLDQFITEKIRKMPEIQMTSTMIAILE 77 (83)
T ss_dssp CHHHHHHHHHTSTTEEEE-----EECBSS-CSEEEEEEES---SHHHHHHHHHTTGGGCTTEEEEEEEEEEEE
T ss_pred CHHHHHHHHhCCCCeeEE-----EEEccc-CCEEEEEEEC---CHHHHHHHHHHHhccCCCEeEEEEEEEEeh
Confidence 368899999999977654 333333 4445666665 455555545556766557877777665444
No 14
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=33.03 E-value=1.3e+02 Score=21.33 Aligned_cols=63 Identities=11% Similarity=0.156 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCC-CCHHHHHHHHHHHHhhhCC-CceeE
Q psy14658 216 PRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPG-TDAGLILKQASRLVHTKFD-FFEMT 285 (306)
Q Consensus 216 p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~-~~~~~i~~~i~~~l~~~~~-v~~v~ 285 (306)
|.++..-.+.+.+.+.+||..+ ++.+..+..+... +.|.+..+ .+.++| ++.|++.=+ +++++
T Consensus 16 Ph~P~ivdlA~~l~~~~gV~gV-nItV~EvD~eTe~--lkItIEG~dIdfd~I----~~~IE~~GgvIHSID 80 (100)
T 3bpd_A 16 PHEPKTIVFALKLSELENVDGV-NIHLSEIDQATEN--IKITILGNNLDYEQI----KGVIEDMGGVIHSVD 80 (100)
T ss_dssp ESCSCHHHHHHHHHTSTTEEEE-EEEEEEECSSEEE--EEEEEEEEEECHHHH----HHHHHTTTCEEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCcceE-EEEEEEeeccccE--EEEEEEecCCCHHHH----HHHHHHcCCeEEeee
Confidence 5666778899999999999887 7888887655444 44444433 577776 445544323 55665
No 15
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=32.08 E-value=85 Score=23.50 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=38.5
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
..+++.+.+.+.|+|..++.+ .| .+..-+.+.++ +.+++.+-+.+.+.+.-|+.++...+.
T Consensus 81 ~~~~~~~~l~~~peV~~~~~v-----tG-~~d~~~~v~~~---d~~~l~~~l~~~l~~~~gV~~~~t~iv 141 (152)
T 2cg4_A 81 DYPSALAKLESLDEVTEAYYT-----TG-HYSIFIKVMCR---SIDALQHVLINKIQTIDEIQSTETLIV 141 (152)
T ss_dssp GHHHHHHHHHTCTTEEEEEEE-----SS-SCSEEEEEEES---CHHHHHHHHHHTTTTSTTEEEEEEEEC
T ss_pred CHHHHHHHHhCCcCeEEEEEE-----ec-ccCEEEEEEEC---CHHHHHHHHHHHhhcCCCeeEEEEEEE
Confidence 468899999999987665432 32 34444566665 455555555567766557776665543
No 16
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=31.98 E-value=1.3e+02 Score=20.94 Aligned_cols=67 Identities=6% Similarity=0.007 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCC-C-CHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 217 RGVEFTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPG-T-DAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~-~-~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
++.+.+++.+.+++ .+.-......+.--++.+-..+.+.+.++.+ . ..+++ ++.+.+.-++.++.|.
T Consensus 17 ~etDl~~L~~~vk~~~~~gl~w~~~k~~pIafGlk~L~i~~vveD~~~~~tD~l----ee~i~~~e~VqSvdV~ 86 (91)
T 2yy3_A 17 PDVNLDELEEKLKKVIPEKYGLAKVEREPIAFGLVALKFYVLGRDEEGYSFDEV----AEKFEEVENVESAEVE 86 (91)
T ss_dssp TTSCHHHHHHHHHHHSCTTCEEEEEEEEECTTSCEEEEEEEEECSSTTCCHHHH----HHHHHHSTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEECCCccccHHH----HHHHhcCCCceEEEEE
Confidence 45567788888777 4555667778888888888899999999765 3 45555 4555443367777664
No 17
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=30.47 E-value=2.8e+02 Score=24.39 Aligned_cols=64 Identities=16% Similarity=0.028 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchh
Q psy14658 115 MLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPI 187 (306)
Q Consensus 115 ~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~ 187 (306)
..++.+++++.|+++.+.+.+.. +.+++.-.-..--..+|.+..+..+.-. +... .+|.+-+..
T Consensus 28 ~~~i~~~gi~gN~lvi~~~~~~~-------~~~~~~~~~l~~La~aDll~~~~~~p~~-~~~~-~~~~~~~~~ 91 (488)
T 3eml_A 28 ELAIAVLAILGNVLVCWAVWLNS-------NLQNVTNYFVVSLAAADIAVGVLAIPFA-ITIS-TGFCAACHG 91 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCG-------GGCSSHHHHHHHHHHHHHHHHHTHHHHH-HHHT-TCCEECHHH
T ss_pred HHHHHHHHHHHHHHhhhheeecc-------ccCChHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccccccchH
Confidence 34567888999998887765542 2222222222334667877765444322 2233 355544443
No 18
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=30.26 E-value=88 Score=21.77 Aligned_cols=77 Identities=6% Similarity=0.043 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCC--CHHHHHHHHHHHHhhhCC--CceeEEEeeec
Q psy14658 216 PRGVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT--DAGLILKQASRLVHTKFD--FFEMTLQIEEF 291 (306)
Q Consensus 216 p~~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~--~~~~i~~~i~~~l~~~~~--v~~v~i~i~p~ 291 (306)
.+.....+|++.+...-.-..+.++.+... ++...+.+|..-|.-. .-..-.+++++.|++.++ -..+.|.++..
T Consensus 4 ~~gv~~~~IR~~i~k~l~~aGis~IeIeR~-~~~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k~~~~~~~~v~I~I~eV 82 (92)
T 1wh9_A 4 GSSGFKAELNEFLTRELAEDGYSGVEVRVT-PTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKV 82 (92)
T ss_dssp SSCSHHHHHHHHHHHHTTTTTEEEEEEEEC-SSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHHHHCCCTTSEEEEEEEC
T ss_pred hhhhHHHHHHHHHHHHHHHCceeeEEEEEC-CCeEEEEEEeCCCceEEcCCcHHHHHHHHHHHHHhCCCCCeEEEEEEEe
Confidence 344555677777765222247788899884 5777777776655332 222335777777777664 24666766654
Q ss_pred CC
Q psy14658 292 NA 293 (306)
Q Consensus 292 ~~ 293 (306)
..
T Consensus 83 ~~ 84 (92)
T 1wh9_A 83 AT 84 (92)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 19
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=29.82 E-value=2.8e+02 Score=24.23 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14658 116 LYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVV 174 (306)
Q Consensus 116 l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~ 174 (306)
.++.+++++.|+++.+.+.+. ++.+++.-.-..--..+|.+..+..+.-.+.
T Consensus 31 ~~~~~~g~~gN~lvi~~~~~~-------~~~~~~~~~~l~~La~aDll~~~~~~p~~~~ 82 (467)
T 3uon_A 31 GSLSLVTIIGNILVMVSIKVN-------RHLQTVNNYFLFSLACADLIIGVFSMNLYTL 82 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------GGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHheeeeeec-------CccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888898888877653 2223333223334567887776554443333
No 20
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=29.81 E-value=1.2e+02 Score=19.78 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=38.0
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
..+++.+.+.+.|+|..++ .+.|+ +..-+.+.++ +.+++.+-+.+.|.+.-|+.++...+.
T Consensus 14 ~~~~~~~~l~~~peV~~~~-----~vtG~-~d~l~~v~~~---d~~~l~~~~~~~l~~~~gV~~~~t~iv 74 (83)
T 2zbc_A 14 GEDEVFERLKSMSEVTEVH-----VVYGV-YDIVVKVEAD---SMDKLKDFVTNTIRKLPKVRSTLTMII 74 (83)
T ss_dssp CHHHHHHHHTTCTTEEEEE-----ECSSS-CSEEEEEECS---SHHHHHHHHHHTGGGSTTEEEEEEEEC
T ss_pred CHHHHHHHHhCCCCeEEEE-----EEecc-CCEEEEEEEC---CHHHHHHHHHHHhcCCCCEeEEEEEEE
Confidence 3588999999999775542 23332 4445666665 445554445556766557777766655
No 21
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=27.99 E-value=3.1e+02 Score=24.13 Aligned_cols=46 Identities=13% Similarity=-0.064 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHH
Q psy14658 115 MLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFG 167 (306)
Q Consensus 115 ~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~ 167 (306)
..++.+++++.|++..+.+.+.. +.+++.-.-..--+.+|.+..+.
T Consensus 27 ~~~i~~~~i~gN~lvi~~~~~~~-------~l~~~~~~~l~~La~aDll~~~~ 72 (484)
T 3vw7_A 27 YTGVFVVSLPLNIMAIVVFILKM-------KVKKPAVVYMLHLATADVLFVSV 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHG-------GGCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------ccCCHHHHHHHHHHHHHHHHHHH
Confidence 34567788888988887765431 22223222223345678776543
No 22
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=27.85 E-value=1.4e+02 Score=19.88 Aligned_cols=66 Identities=8% Similarity=0.126 Sum_probs=43.9
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecC
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFN 292 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~ 292 (306)
...++.+.+.+.. .++.++...... +...+.+.+.+++..+.+++.+++++ +.+.++ +.+++.|.+
T Consensus 18 ila~vt~~la~~~--~NI~~i~~~~~~-~~~~~~i~v~~~~~~~l~~l~~~L~~-~~~~~~---~~~~~~~~~ 83 (91)
T 1zpv_A 18 IVAGVSGKIAELG--LNIDDISQTVLD-EYFTMMAVVSSDEKQDFTYLRNEFEA-FGQTLN---VKINIQSAA 83 (91)
T ss_dssp HHHHHHHHHHHTT--CEEEEEEEEEET-TEEEEEEEEEESSCCCHHHHHHHHHH-HHHHHT---EEEEEEEGG
T ss_pred HHHHHHHHHHHcC--CCEEEEEeEEEc-CEEEEEEEEEeCCCCCHHHHHHHHHH-HHHHcC---CEEEEeeHH
Confidence 4577777777765 455666665544 67788888888876677888777764 444444 556665544
No 23
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=27.62 E-value=3e+02 Score=23.88 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14658 113 TIMLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVV 174 (306)
Q Consensus 113 ~~~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~ 174 (306)
....++.+++++.|+++.+...+.. +.+++.-.-..--..+|.+..+..+.-.+.
T Consensus 13 ~~~~~~~~~gi~gN~~vi~~~~~~~-------~~~~~~~~~l~~La~~Dll~~~~~~p~~~~ 67 (452)
T 3rze_A 13 VVLSTICLVTVGLNLLVLYAVRSER-------KLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67 (452)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCS-------TTCCGGGHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------ccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678889999999888776542 122222222233456888876554443333
No 24
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=27.41 E-value=3.1e+02 Score=23.90 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHH
Q psy14658 115 MLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFG 167 (306)
Q Consensus 115 ~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~ 167 (306)
..++.+++++.|+++.+.+.+.. +.+++.-.-..--..+|.+..+.
T Consensus 24 ~~~~~~~gi~gN~lvi~~~~~~~-------~~~~~~~~~l~~La~~Dll~~~~ 69 (464)
T 4dkl_A 24 YSIVCVVGLFGNFLVMYVIVRYT-------KMKTATNIYIFNLALADALATST 69 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-------TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeehhhhhcc-------ccCCHHHHHHHHHHHHHHHHHHH
Confidence 34567788888988887776532 22233222233456788776654
No 25
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=25.56 E-value=1.7e+02 Score=20.33 Aligned_cols=65 Identities=8% Similarity=0.150 Sum_probs=42.1
Q ss_pred CCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeeecCC
Q psy14658 219 VEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEEFNA 293 (306)
Q Consensus 219 ~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p~~~ 293 (306)
...+++.+.+.++||+ +++...-..+++++ .++-+ +.+++.+.+ +.|++.-||..++......+.
T Consensus 17 ~~~~~V~~~L~~ipgv----Ei~~~~~~~GkiVV--~iEa~---~~~~l~~~i-~~I~~i~GVlst~lvy~~~e~ 81 (95)
T 2jsx_A 17 ERISDISTQLNAFPGC----EVAVSDAPSGQLIV--VVEAE---DSETLIQTI-ESVRNVEGVLAVSLVYHQQEE 81 (95)
T ss_dssp TSHHHHHHHHTTSTTE----EEEEEETTTTEEEE--EEEES---SHHHHHHHH-HHHTTSTTEEEEEESSCCCCC
T ss_pred CCHHHHHHHHHCCCCe----EEEEecCCCCCEEE--EEEeC---CHHHHHHHH-HHHhcCCCccEEeEEEEEecc
Confidence 3479999999999987 34444311244443 33333 567777777 788777788888876665444
No 26
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=24.30 E-value=2.1e+02 Score=24.09 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHhcCCcCcccc--ceeEEEeecCCeEEEEEEEEeCCCC---CHHHHHHHHHHHHhhh---CCCceeEEEeee
Q psy14658 224 VLNTFLDIEGVEKV--HNLRIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTK---FDFFEMTLQIEE 290 (306)
Q Consensus 224 i~~~i~~~~~v~~v--~~~~~~~~~~~~~~v~v~i~~~~~~---~~~~i~~~i~~~l~~~---~~v~~v~i~i~p 290 (306)
+++.+++.|.+..= ..+++..++++.+.+.+..-+++.. -..++.+++.+.+++. ++.-..+++++.
T Consensus 205 l~~~~~~~~~vl~~p~p~v~v~~~~~~~i~~~v~~~~~~~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~~ 279 (286)
T 2vv5_A 205 LTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKR 279 (286)
T ss_dssp HHHHHHHCTTBCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEEC
T ss_pred HHHHHHhCcccccCCCCEEEEEEecCCeEEEEEEEEEccchHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEecc
Confidence 33444445654321 3567778887778888888777642 1244555566666554 122355666654
No 27
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=23.69 E-value=4e+02 Score=23.89 Aligned_cols=46 Identities=13% Similarity=0.017 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHH
Q psy14658 116 LYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGV 168 (306)
Q Consensus 116 l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v 168 (306)
.++.+++++.|+++.+.+.+.. +.+++.-.-..--+.+|.+..+..
T Consensus 48 ~~i~~~gi~gN~lvi~~i~~~~-------~l~~~~~~~l~nLAiaDll~~~~~ 93 (500)
T 2rh1_A 48 SLIVLAIVFGNVLVITAIAKFE-------RLQTVTNYFITSLACADLVMGLAV 93 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG-------GGCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-------ccCcccHHHHHHHHHHHHHHHHHH
Confidence 3455677888888777765532 222332222233456777765543
No 28
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=23.61 E-value=1.9e+02 Score=20.01 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHhcC-CcCccccceeEEEeecCCeEEEEEEEEeCCCC-CHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 217 RGVEFTDVLNTFLD-IEGVEKVHNLRIWALSLDKAALSAHLAVKPGT-DAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 217 ~~~~~~~i~~~i~~-~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~-~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
++.+.+++.+.+++ .+.-......+.--++.+-..+.+.+.++.+. ..+.+ ++.+.+.-++.++.|.
T Consensus 15 ~etDl~~L~~~vk~~~~~gl~w~~~k~~piafGlk~L~i~~vveD~~~~td~l----ee~i~~~e~Vqsvdv~ 83 (89)
T 1gh8_A 15 PDVDLEALKKEIQERIPEGTELHKIDEEPIAFGLVALNVMVVVGDAEGGTEAA----EESLSGIEGVSNIEVT 83 (89)
T ss_dssp SCCCHHHHHHHHHHHSCTTSEECCCCEEECSSSCEEEEEEEEESSSCGGGGHH----HHHHTTSCSSEEEEEE
T ss_pred CCCCHHHHHHHHHHhccCCcEEeeeeEEEEEcceeeEEEEEEEEcCCcChHHH----HHHHhccCCccEEEEE
Confidence 44567777777766 45555666777777787888899999997653 44444 5556554367777764
No 29
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=23.53 E-value=3.7e+02 Score=23.48 Aligned_cols=46 Identities=11% Similarity=-0.075 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHH
Q psy14658 116 LYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGV 168 (306)
Q Consensus 116 l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v 168 (306)
.++.+++++.|+++.+...+.. +.++..-.-..--..+|.+..+..
T Consensus 42 ~ii~i~gi~gN~lvi~vi~~~~-------~~~~~~~~ll~~LaiaDll~~~~~ 87 (448)
T 2z73_A 42 GICGIIGCGGNGIVIYLFTKTK-------SLQTPANMFIINLAFSDFTFSLVN 87 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS-------TTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhhhhcc-------ccCCccchHHHHHHHHHHHHHHHH
Confidence 3456788888988888766532 112222222334566887776543
No 30
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=23.51 E-value=3.8e+02 Score=23.65 Aligned_cols=64 Identities=9% Similarity=0.076 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecchh
Q psy14658 115 MLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLVDPI 187 (306)
Q Consensus 115 ~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~i~~~~~~~~~~~~~~D~~ 187 (306)
..++.+++++.|+++.+.+.+. ++.+++.-.-..--+.+|.+..+ .+-..+..+..+|++-+..
T Consensus 55 ~~~i~~~g~~gN~lvi~~~~~~-------~~l~~~~~~~l~~La~~Dll~~~--~~p~~~~~~~~~~~~~~~~ 118 (502)
T 3odu_A 55 YSIIFLTGIVGNGLVILVMGYQ-------KKLRSMTDKYRLHLSVADLLFVI--TLPFWAVDAVANWYFGNFL 118 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-------CCSCCHHHHHHHHHHHHHHHHHT--THHHHHHHHHTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------ccCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCcCCchh
Confidence 3456778888898888877553 22233322222334567877643 2222222222456554444
No 31
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.04 E-value=1.9e+02 Score=21.41 Aligned_cols=62 Identities=15% Similarity=0.091 Sum_probs=37.0
Q ss_pred CHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEee
Q psy14658 220 EFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIE 289 (306)
Q Consensus 220 ~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~ 289 (306)
..+++.+.+.+.|+|..++.+ .|+ +..-+.+.+++ +.+++.+-+.+.+.+.-|+.++...+.
T Consensus 81 ~~~~~~~~l~~~peV~~~~~v----tG~--~d~~~~v~~~~--d~~~l~~~~~~~l~~~~gV~~~~t~iv 142 (151)
T 2dbb_A 81 DADKVISEISDIEYVKSVEKG----VGR--YNIIVRLLLPK--DIKDAENLISEFLQRIKNAENVEVILI 142 (151)
T ss_dssp HHHHHHHHHTTCTTEEEEEEE----ESS--CSEEEEEEEES--SHHHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred CHHHHHHHHHcCCCeEEEeEe----cCC--CCEEEEEEEcC--CHHHHHHHHHHHhhcCCCeeEEEEEEE
Confidence 356888999999987665532 232 34445666622 344544445567766557776666554
No 32
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=22.06 E-value=2.3e+02 Score=22.52 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=30.1
Q ss_pred ecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEE
Q psy14658 245 LSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQ 287 (306)
Q Consensus 245 ~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~ 287 (306)
.++++-.+-++|=++.-...+.|-.++.++|+++++-.+|.+-
T Consensus 51 v~~~kKAivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfi 93 (190)
T 3u5c_H 51 VAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFL 93 (190)
T ss_dssp CTTSCEEEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEE
T ss_pred ecCCcEEEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 4445555556655554446688888999999999966777664
No 33
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=21.76 E-value=2.4e+02 Score=20.81 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=39.4
Q ss_pred CCCHHHHHHHhcCCcCccccceeEEEeecCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhhCCCceeEEEeee
Q psy14658 218 GVEFTDVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGTDAGLILKQASRLVHTKFDFFEMTLQIEE 290 (306)
Q Consensus 218 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~~~~~~~v~v~i~~~~~~~~~~i~~~i~~~l~~~~~v~~v~i~i~p 290 (306)
+...+++.+.+.+.|+|..++. ..| .+..-+.+.++ +.+++.+-+ +.+.+.-|+.++...+.-
T Consensus 77 ~~~~~~~~~~l~~~p~V~~~~~-----~tG-~~d~~~~v~~~---d~~~l~~~~-~~l~~~~gV~~~~t~ivl 139 (151)
T 2cyy_A 77 AGKYSEVASNLAKYPEIVEVYE-----TTG-DYDMVVKIRTK---NSEELNNFL-DLIGSIPGVEGTHTMIVL 139 (151)
T ss_dssp TTCHHHHHHHHHTCTTEEEEEE-----CSS-SSSEEEEEEES---SHHHHHHHH-HHHHTSTTEEEEEEEECC
T ss_pred cccHHHHHHHHhcCCCeeEeeE-----ecC-CCCEEEEEEEC---CHHHHHHHH-HHHhCCCCEeEEEEEEEE
Confidence 4557899999999998766543 222 23444555555 345554445 677665577777666553
No 34
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=21.15 E-value=1.8e+02 Score=27.50 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeecchhhHHHHHHHHHH-----HhHHHHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Q psy14658 161 DFLQSFGVFVAAVVIYFKPEWVLVDPICTFLFALLVLA-----TTFTILRDIMIVLMEGIPRGVEFTDVLNTFLDI 231 (306)
Q Consensus 161 D~~~s~~v~i~~~~~~~~~~~~~~D~~~si~i~~~i~~-----~~~~~~~~s~~~Ll~~~p~~~~~~~i~~~i~~~ 231 (306)
|++.....+++.++..+ +.|.+-++++++-.++=+. ..|+.+.+.+..|++....+....+....++.+
T Consensus 5 ~~v~~~i~i~~~ilg~~--~vP~vg~~~~~~s~l~~~lwp~~~~~w~~~~~~ve~lIdq~I~~~~~~~a~~~l~gl 78 (589)
T 3eb7_A 5 DAVKTAISLVGTILGKL--GVPLVGPIVSLYSTLIDVLWPGGKSQWEIFMEQVEALINQKIAEYARAKALAELEGL 78 (589)
T ss_dssp HHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--cCCcHHHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445445555544443 5665555555443333333 347889999999999887766555555555443
No 35
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=20.68 E-value=4.2e+02 Score=23.08 Aligned_cols=44 Identities=25% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHH
Q psy14658 115 MLYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQS 165 (306)
Q Consensus 115 ~l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s 165 (306)
.+++.+++++.|.+..+...+.. +.+++.-.-..--..+|.+..
T Consensus 132 ~~~i~~~gi~gN~lvi~~i~~~~-------~l~~~~~~ll~~LAvsDll~~ 175 (434)
T 4ea3_A 132 YLAVCVGGLLGNCLVMYVILRHT-------KMKTATNIYIFNLALADTLVL 175 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-------SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHeeeeeeecC-------ccCchhHHHHHHHHHHHHHHH
Confidence 34466778888988887766532 223333222333466777653
No 36
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=20.28 E-value=4.7e+02 Score=23.45 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchhHHHHHHHHHHHHHHHHHHH
Q psy14658 116 LYTSVFGLIVNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVF 169 (306)
Q Consensus 116 l~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~v~ 169 (306)
.++.+++++.|.++.+...+. ++.+++.-.-..--..+|.+..+..+
T Consensus 190 ~ii~~~gi~gN~lvi~vi~~~-------~~lr~~~~~ll~nLAiaDll~~~~~~ 236 (514)
T 3sn6_R 190 SLIVLAIVFGNVLVITAIAKF-------ERLQTVTNYFITSLACADLVMGLAVV 236 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------GGGCCHHHHHHHHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHhHHHhhhheecc-------cccccHHHHHHHHHHHHHHHHHHHhC
Confidence 456778888898888776553 22233322223335677877765433
Done!