RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14658
         (306 letters)



>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
           {Escherichia coli [TaxId: 562]}
          Length = 204

 Score =  108 bits (271), Expect = 4e-29
 Identities = 31/209 (14%), Positives = 81/209 (38%), Gaps = 20/209 (9%)

Query: 17  KKARRKLWFASILCLVFMICEIVGGYFSGSLAIATDAAHLLTDFASFMISLIALWVASRP 76
           +   R    A+ +  + ++ +I   +++GS++I       L D  + + +L+ +  + +P
Sbjct: 3   RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQP 62

Query: 77  ATKQMPFGWYRAEVVT------------GILLYIAIERVITKNFDIEPTIMLYTSVFGLI 124
           A     FG  +AE +               L    I+ +I+     +P + +  ++  LI
Sbjct: 63  ADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALI 122

Query: 125 VNVLMGCTLHQHSHSHGGVREDVNVNVRAAFIHVLGDFLQSFGVFVAAVVIYFKPEWVLV 184
             +++                  +  VRA  +H   D + +  + +A  + ++   W   
Sbjct: 123 CTIILVSFQRWVVRRT------QSQAVRADMLHYQSDVMMNGAILLALGLSWYG--WHRA 174

Query: 185 DPICTFLFALLVLATTFTILRDIMIVLME 213
           D +      + +L +   +  + +  L++
Sbjct: 175 DALFALGIGIYILYSALRMGYEAVQSLLD 203


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 29.7 bits (67), Expect = 0.098
 Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 223 DVLNTFLDIEGVEKVHNLRIWALSLDKAALSAHLAVKPGT---DAGLILKQASRLVHTKF 279
           ++++      GV   H+LR          +  HL ++       A ++  Q  + +  +F
Sbjct: 9   EIIDIVTSWPGVSGAHDLRTRQSG-PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRF 67

Query: 280 DFFEMTLQIE 289
              ++ +  +
Sbjct: 68  PGSDVIIHQD 77


>d1nl1a2 g.32.1.1 (A:1-65) Prothrombin {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 65

 Score = 27.0 bits (60), Expect = 0.50
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 279 FDFFEMTLQIEEFNATMEACDQCQSPAQ 306
           F+  E     + F A   AC+  ++P +
Sbjct: 29  FEALESLSATDAFWAKYTACESARNPRE 56


>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
           thermophilus [TaxId: 274]}
          Length = 127

 Score = 26.4 bits (58), Expect = 2.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 5   DHCHRERKNKNDKKARRK 22
           D    ERK     KARR 
Sbjct: 104 DARVVERKKYGKHKARRA 121


>d1gmua2 d.58.38.1 (A:71-138) Urease metallochaperone UreE,
           C-terminal domain {Klebsiella aerogenes [TaxId: 28451]}
          Length = 68

 Score = 24.7 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 157 HVLGDFLQSFGVFVAAVVIYFKPE 180
           HVL D L+ FG+ V    + F+PE
Sbjct: 42  HVLDDMLRQFGLTVTFGQLPFEPE 65


>d1gska1 b.6.1.3 (A:2-182) Spore coat protein A, CotA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 181

 Score = 25.6 bits (55), Expect = 6.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 130 GCTLHQHSHSHGGVREDVNVNVRAAFI 156
           G  L  H H+    R +V   +  A+I
Sbjct: 146 GAILWYHDHAMALTRLNVYAGLVGAYI 172


>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
           11983]}
          Length = 502

 Score = 26.1 bits (57), Expect = 7.3
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 161 DFLQSFGVFVAA--VVIYFKPEWVLVDPICTFLFALLVLATTFTILRDIMIVLMEGIPRG 218
           D  Q   V  AA  +++ F  E  L   +   L +      +   + D  I + EG+P G
Sbjct: 242 DSTQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLS-----PSVVDVGDFTISINEGLPSG 296

Query: 219 VEFTDVLNT 227
           V  T   N+
Sbjct: 297 VPCTSQWNS 305


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,140,734
Number of extensions: 51127
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 7
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.5 bits)