BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14660
(375 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|W Chain W, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 268
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 150/236 (63%), Gaps = 13/236 (5%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VE 59
MVLE+T++ +DNS++ RNGDF TR +AQ D+V + +K SNPEN VGL++ A +
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL 119
VL+T T++ G+IL+ LH Q G ++ T ++IA L LKHRQ K RI+AFV SP+
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 120 EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH- 178
EL +LAK LKK V VDI++FGE NTELL+ FI+ +N SH++TV GP
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180
Query: 179 LSDALISSPIIQGEDGA-----------GGAPGSSYEFGVDPNEDPELALALRVSM 223
L + + SSPII E + A G+ +FGVDP+ DPELA+ALR+SM
Sbjct: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain
Length = 192
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/192 (47%), Positives = 126/192 (65%), Gaps = 5/192 (2%)
Query: 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEV 60
VLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+ + D S +V
Sbjct: 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV 60
Query: 61 LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 120
L+TLT D G+ LS +H + GN F GI+IA LALKHR+ K + RI+AFVGSP+ +
Sbjct: 61 LSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVED 120
Query: 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH-L 179
E+ L +LAKR+KK V +DI+ G E+ N L FI N D H+V++ P L
Sbjct: 121 EKNLIRLAKRMKKNNVAIDIIHIG-ELQNESALQHFIDAANSSD--SCHLVSIPPSPQLL 177
Query: 180 SDALISSPIIQG 191
SD + SPI QG
Sbjct: 178 SDLVNQSPIGQG 189
>pdb|1YX4|A Chain A, Structure Of S5a Bound To Monoubiquitin Provides A Model
For Polyubiquitin Recognition
pdb|1YX5|A Chain A, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
pdb|1YX6|A Chain A, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 132
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 197 GAPGSSYEFGVDPNEDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKPT 256
G S +EFGVDP+ DPELALALRVSM T
Sbjct: 24 GLGASDFEFGVDPSADPELALALRVSM----EEQRQRQEEEARRAAAASAAEAGIATTGT 79
Query: 257 AEAKDAPGDMATAAHPVG--GQPDFATMTEEEQIAFAMQMSMQ 297
++ DA M + G G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 80 EDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQ 122
>pdb|2KDE|A Chain A, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|A Chain A, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
Length = 111
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 197 GAPGSSYEFGVDPNEDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPKPT 256
G S +EFGVDP+ DPELALALRVSM T
Sbjct: 3 GLGASDFEFGVDPSADPELALALRVSM----EEQRQRQEEEARRAAAASAAEAGIATTGT 58
Query: 257 AEAKDAPGDMATAAHPVG--GQPDFATMTEEEQIAFAMQMSMQ 297
++ DA M + G G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 59 EDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQ 101
>pdb|1UEL|B Chain B, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of Proteasome
Subunit S5a
Length = 48
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 275 GQPDFATMTEEEQIAFAMQMSMQ 297
G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 15 GLPDLSSMTEEEQIAYAMQMSLQ 37
>pdb|1P9C|A Chain A, Nmr Solution Structure Of The C-Terminal Ubiquitin-
Interacting Motif Of The Proteasome Subunit S5a
pdb|1P9D|S Chain S, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 45
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 275 GQPDFATMTEEEQIAFAMQMSMQ 297
G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 12 GLPDLSSMTEEEQIAYAMQMSLQ 34
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 83 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142
NIN I ++ Q KN ++RI A +G ++R L+ L LKK V DI+
Sbjct: 184 NINKYDNSDIRDCFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIE 243
Query: 143 FGEEVVNTELL 153
E+ + LL
Sbjct: 244 AAGELGDKTLL 254
>pdb|3TZ1|A Chain A, Crystal Structure Of The Ca2+-saturated C-terminal Domain
Of Akazara Scallop Troponin C In Complex With A Troponin
I Fragment
Length = 74
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 10/59 (16%)
Query: 118 DLEERELTKLAKRLKKEK---VNVDIV-----SFGEEVVNTELLNTFISTLNGKDGSGS 168
DL+EREL + + L KEK + VD++ S G+E+ E+ N T DGSG+
Sbjct: 3 DLDERELKEAFRVLDKEKKGVIKVDVLRWILKSLGDELTEDEIENMIAET--DTDGSGT 59
>pdb|1SHU|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of
Human Capillary Morphogenesis Protein 2: An Anthrax
Toxin Receptor
Length = 182
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 44 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 100
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 39 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 98
Query: 101 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 143
G IIA +D E+E K+++ L V ++ F
Sbjct: 99 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 145
>pdb|1T6B|Y Chain Y, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
Length = 189
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 44 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 100
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 46 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 105
Query: 101 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 143
G IIA +D E+E K+++ L V ++ F
Sbjct: 106 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 152
>pdb|3KUG|A Chain A, Crystal Structure Of E. Coli Hppk(H115a)
pdb|3KUH|A Chain A, Crystal Structure Of E. Coli Hppk(H115a) In Complex With
Ampcpp And Hp
Length = 158
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|3HSJ|A Chain A, Crystal Structure Of E. Coli Hppk(N55a)
Length = 158
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|3HCX|A Chain A, Crystal Structure Of E. Coli Hppk(N10a)
pdb|3HD1|A Chain A, Crystal Structure Of E. Coli Hppk(N10a) In Complex With
Mgam
Length = 158
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|1TZN|AA Chain a, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|BB Chain b, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|CC Chain c, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|DD Chain d, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|EE Chain e, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|FF Chain f, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|GG Chain g, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|HH Chain h, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|II Chain i, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|JJ Chain j, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|KK Chain k, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|LL Chain l, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|MM Chain m, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|OO Chain o, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
Length = 181
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 44 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 100
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 38 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 97
Query: 101 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 143
G IIA +D E+E K+++ L V ++ F
Sbjct: 98 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 144
>pdb|3HSD|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSD|B Chain B, Crystal Structure Of E. Coli Hppk(Y53a)
pdb|3HSG|A Chain A, Crystal Structure Of E. Coli Hppk(Y53a) In Complex With
Mgampcpp
Length = 158
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|3HSZ|A Chain A, Crystal Structure Of E. Coli Hppk(F123a)
pdb|3HT0|A Chain A, Crystal Structure Of E. Coli Hppk(F123a) In Complex With
Mgampcpp
Length = 158
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|3HD2|A Chain A, Crystal Structure Of E. Coli Hppk(Q50a) In Complex With
Mgam Pterin
Length = 158
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|1SHT|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of
Human Capillary Morphogenesis Protein 2: An Anthrax
Toxin Receptor
Length = 181
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 44 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 100
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 39 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 98
Query: 101 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 143
G IIA +D E+E K+++ L V ++ F
Sbjct: 99 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 145
>pdb|1DY3|A Chain A, Ternary Complex Of 7,8-Dihydro-6-
Hydroxymethylpterinpyrophosphokinase From Escherichia
Coli With Atp And A Substrate Analogue.
pdb|1EX8|A Chain A, Crystal Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Hp4a, The
Two-Substrate- Mimicking Inhibitor
pdb|1EQM|A Chain A, Crystal Structure Of Binary Complex Of
6-Hydroxymethyl-7,8- Dihydropterin Pyrophosphokinase
With Adenosine-5'- Diphosphate
pdb|1EQ0|A Chain A, Solution Structure Of 6-Hydroxymethyl-7,8-Dihydropterin
Pyrophosphokinase Complexed With Mgamppcp
pdb|1Q0N|A Chain A, Crystal Structure Of A Ternary Complex Of
6-Hydroxymethyl-7, 8-Dihydropterin Pyrophosphokinase
From E. Coli With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1RAO|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Hppk
With Amp And 6-Hydroxymethylpterin-Diphosphate At 1.56
Angstrom Resolution
pdb|1RB0|A Chain A, Crystal Structure Of A Binary Complex Of E. Coli Hppk With
6-Hydroxymethylpterin-Diphosphate At 1.35 Angstrom
Resolution
pdb|2F63|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analogs Ampcpp And Hp-1
pdb|2F65|A Chain A, Solution Structure Of Hppk In Complex With Inhibitor
Analog Ampcpp
pdb|1HKA|A Chain A, 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase
pdb|3IP0|A Chain A, Crystal Structure Of E. Coli Hppk In Complx With Mgampcpp
And 6-Hydroxymethylpterin6-Carboxypterin
pdb|3UD5|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1a
pdb|3UDE|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1b
pdb|3UDV|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1c
pdb|4F7V|A Chain A, Crystal Structure Of E. Coli Hppk In Complex With
Bisubstrate Analogue Inhibitor J1d (Hp26)
Length = 158
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|1HQ2|A Chain A, Crystal Structure Of A Ternary Complex Of E.Coli
Hppk(R82a) With Mgampcpp And
6-Hydroxymethyl-7,8-Dihydropterin At 1.25 Angstrom
Resolution
pdb|1IM6|A Chain A, Crystal Structure Of Unligated Hppk(R82a) From E.Coli At
1.74 Angstrom Resolution
Length = 158
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGAVRK-AERWGPRTLDLDIMLFGNEVINTERL 111
>pdb|1F9H|A Chain A, Crystal Structure Of The Ternary Complex Of E. Coli
Hppk(R92a) With Mgampcpp And 6-Hydroxymethyl-7,8-
Dihydropterin At 1.50 Angstrom Resolution
pdb|1G4C|A Chain A, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1G4C|B Chain B, Crystal Structure Of A Complex Of Hppk(R92a) From E.Coli
With Mg2+ At 1.65 Angstrom Resolution
pdb|1KBR|A Chain A, Crystal Structure Of Unligated Hppk(R92a) From E.Coli At
1.55 Angstrom Resolution
Length = 158
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERWGPATLDLDIMLFGNEVINTERL 111
>pdb|1TMJ|A Chain A, Crystal Structure Of E.Coli Apo-Hppk(W89a) At 1.45
Angstrom Resolution
pdb|1TMM|A Chain A, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
pdb|1TMM|B Chain B, Crystal Structure Of Ternary Complex Of E.Coli Hppk(W89a)
With Mgampcpp And 6-Hydroxymethylpterin
Length = 158
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 9/50 (18%)
Query: 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153
NH RI +L++ + K A+R +++DI+ FG EV+NTE L
Sbjct: 71 NHTQRI--------ELQQGRVRK-AERAGPRTLDLDIMLFGNEVINTERL 111
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 102 GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161
G+ RII +G P+D E + +L+K ++ D SF E+ + E+L T I ++
Sbjct: 121 GRETLGRIINVIGEPID----ERGPIKSKLRK-PIHADPPSFAEQSTSAEILETGIKVVD 175
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 102 GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161
G+ RII +G P+D E + +L+K ++ D SF E+ + E+L T I ++
Sbjct: 94 GRETLGRIINVIGEPID----ERGPIKSKLRK-PIHADPPSFAEQSTSAEILETGIKVVD 148
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 102 GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161
G+ RII +G P+D E + +L+K ++ D SF E+ + E+L T I ++
Sbjct: 88 GRETLGRIINVIGEPID----ERGPIKSKLRK-PIHADPPSFAEQSTSAEILETGIKVVD 142
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 102 GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161
G+ RII +G P+D E + +L+K ++ D SF E+ + E+L T I ++
Sbjct: 94 GRETLGRIINVIGEPID----ERGPIKSKLRK-PIHADPPSFAEQSTSAEILETGIKVVD 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,807,381
Number of Sequences: 62578
Number of extensions: 311704
Number of successful extensions: 703
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 36
length of query: 375
length of database: 14,973,337
effective HSP length: 100
effective length of query: 275
effective length of database: 8,715,537
effective search space: 2396772675
effective search space used: 2396772675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)