BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14660
(375 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens
GN=PSMD4 PE=1 SV=1
Length = 377
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 235/366 (64%), Positives = 279/366 (76%), Gaps = 7/366 (1%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV 60
MVLESTM+CVDNS++MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+ EV
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV 60
Query: 61 LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 120
L TLT D GRILSKLH VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+
Sbjct: 61 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN 120
Query: 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLS 180
E++L KLAKRLKKEKVNVDI++FGEE VNTE L F++TLNGKDG+GSH+VTV GP L+
Sbjct: 121 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA 180
Query: 181 DALISSPIIQGEDGAG-GAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAAE 239
DALISSPI+ GE GA G S +EFGVDP+ DPELALALRVSMEEQR RQE EARRAA
Sbjct: 181 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA 240
Query: 240 GASGADTSASSAVPKPTAEAKDAPGDMATAAHPVG--GQPDFATMTEEEQIAFAMQMSMQ 297
++ A++ T ++ DA M + G G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 241 ASAAEAGIATTG----TEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQ 296
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMVNDAAFLQSVLENLPGVDPQSAEVRHAL 357
+ A S+ AS+A A+ D +++ D FLQSVLENLPGVDP + +R+A+
Sbjct: 297 GAEFGQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAM 356
Query: 358 SSSAEK 363
S A +
Sbjct: 357 GSLASQ 362
>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus
GN=PSMD4 PE=2 SV=1
Length = 382
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/366 (63%), Positives = 278/366 (75%), Gaps = 7/366 (1%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV 60
MVLESTM+CVDNS++MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+ EV
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV 60
Query: 61 LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 120
L TLT D GRILSKLH VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+
Sbjct: 61 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN 120
Query: 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLS 180
E++L KLAKRLKKEKVNVDI++FGEE VNTE L F++TLNGKDG+GSH+VTV GP L+
Sbjct: 121 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA 180
Query: 181 DALISSPIIQGEDGAG-GAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAAE 239
DALISSPI+ GE GA G S +EFGVDP+ DPELALALRVSMEEQR RQE EARRAA
Sbjct: 181 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA 240
Query: 240 GASGADTSASSAVPKPTAEAKDAPGDMATAAHPVG--GQPDFATMTEEEQIAFAMQMSMQ 297
++ A++ T ++ DA M + G G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 241 ASAAEAGIATAG----TEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQ 296
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMVNDAAFLQSVLENLPGVDPQSAEVRHAL 357
+ A S+ AS+A + D +++ D FLQSVLENLPGVDP + +R+A+
Sbjct: 297 GAEFGQAESADMDASSAMDTSEPTKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAM 356
Query: 358 SSSAEK 363
S A +
Sbjct: 357 GSLASQ 362
>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila
melanogaster GN=Pros54 PE=1 SV=2
Length = 396
Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/389 (60%), Positives = 271/389 (69%), Gaps = 40/389 (10%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV 60
MVLESTMIC DNSDF RNGD+ PTRL Q+D +NLVC +K RSNPENNVGL+ ++++VEV
Sbjct: 1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEV 60
Query: 61 LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 120
LATLTSD GRI SK+H VQP G IN +TGIRIAHL LKHRQGKNHKMRI+ FVGSP++ E
Sbjct: 61 LATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHE 120
Query: 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLS 180
E +L K AKRLKKEKVNVDIVSFG+ N E+L FI+ LNGKDG+GSH+V+V G LS
Sbjct: 121 EGDLVKQAKRLKKEKVNVDIVSFGDHGNNNEILTAFINALNGKDGTGSHLVSVPRGSVLS 180
Query: 181 DALISSPIIQGEDGAGGAPGSS--YEFGVDPNEDPELALALRVSMEEQRARQESEARRA- 237
DAL+SSPIIQGEDG GGA +EFGVDPNEDPELALALRVSMEEQR RQESE RRA
Sbjct: 181 DALLSSPIIQGEDGMGGAGLGGNVFEFGVDPNEDPELALALRVSMEEQRQRQESEQRRAN 240
Query: 238 -----------------------AEGASGADTSASSAVPKPTAEAKDAPGDMATAAHPVG 274
E ++GA+ A+ T EA + P
Sbjct: 241 PDGAPPTGGDAGGGGGVSGSGPGNEESAGAENEAN------TEEAMLQRALALSTETPED 294
Query: 275 GQPDFATMTEEEQIAFAMQMSMQDTQEPAASSSKAPASAAASEEAKAEPMDTD----EMV 330
PDFA MTEEEQIAFAMQMSMQD + + + A ++EA A PMD D E++
Sbjct: 295 NLPDFANMTEEEQIAFAMQMSMQDAPDDSVTQQ---AKRPKTDEANA-PMDVDEDYSEVI 350
Query: 331 NDAAFLQSVLENLPGVDPQSAEVRHALSS 359
D AFLQSVLENLPGVDPQS VR A+ S
Sbjct: 351 GDPAFLQSVLENLPGVDPQSEAVRDAVGS 379
>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus
GN=Psmd4 PE=1 SV=1
Length = 376
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 240/372 (64%), Positives = 278/372 (74%), Gaps = 11/372 (2%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV 60
MVLESTM+CVDNS++MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+ EV
Sbjct: 1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV 60
Query: 61 LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 120
L TLT D GRILSKLH VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+
Sbjct: 61 LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN 120
Query: 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLS 180
E++L KLAKRLKKEKVNVDI++FGEE VNTE L F++TLNGKDG+GSH+VTV GP L+
Sbjct: 121 EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA 180
Query: 181 DALISSPIIQGEDGAG-GAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAAE 239
DALISSPI+ GE GA G S +EFGVDP+ DPELALALRVSMEEQR RQE EARRAA
Sbjct: 181 DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA 240
Query: 240 GASGADTSASSAVPKPTAEAKDAPGDMATAAHPVG--GQPDFATMTEEEQIAFAMQMSMQ 297
++ A+ T ++ DA M G G PD ++MTEEEQIA+AMQMS+Q
Sbjct: 241 ASAAEAGIATPG----TEDSDDALLKMTINQQEFGRPGLPDLSSMTEEEQIAYAMQMSLQ 296
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMVNDAAFLQSVLENLPGVDPQSAEVRH-- 355
T+ S+ +SA + + E D D M D FLQSVLENLPGVDP +A +R
Sbjct: 297 GTEFSQESADMDASSAMDTSDPVKEEDDYDVM-QDPEFLQSVLENLPGVDPNNAAIRSVM 355
Query: 356 -ALSSSAEKPAK 366
AL+S A K K
Sbjct: 356 GALASQATKDGK 367
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL
PE=5 SV=1
Length = 862
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 217/359 (60%), Positives = 260/359 (72%), Gaps = 11/359 (3%)
Query: 10 VDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVG 69
VDNS++M NGDFLPTRLQAQQDAVN VCHSKTRSNPENNVGL+ + + EVL TLT D G
Sbjct: 495 VDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDNDCEVLTTLTPDTG 554
Query: 70 RILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAK 129
RILSKLH VQP G I F GI +AHLALKHRQG NHK+RIIAFVG+PV+ E+ L KLAK
Sbjct: 555 RILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAK 614
Query: 130 RLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALISSPII 189
LKKEKVNVDI++FGEE VNTE L F++TLNGKDG+GSH+VTV GP L+DALIS PI+
Sbjct: 615 CLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLADALISFPIL 674
Query: 190 QGEDGA-GGAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAAEGASGADTSA 248
GE GA G S +EFGVDP+ DPELAL LRV MEEQR RQE EAR+AA ++ A
Sbjct: 675 AGEGGAMMGLGASDFEFGVDPSADPELALVLRVFMEEQRQRQEEEARQAAAASAAEAGIA 734
Query: 249 SSAVPKPTAEAKDAPGDMATAAHPVG--GQPDFATMTEEEQIAFAMQMSMQDTQEPAASS 306
++ T ++ DA M + G G PD ++MTEEE+I AMQMS+Q + A S
Sbjct: 735 TTG----TEDSDDALLKMTISQQEFGHTGLPDLSSMTEEEKIVCAMQMSLQGAEFGLAES 790
Query: 307 SKAPASAA--ASEEAKAEPMDTDEMVNDAAFLQSVLENLPGVDPQSAEVRHALSSSAEK 363
+ AS+A SE AK E D +++ D FLQSVLENLPGVDP + +R+A+ S A +
Sbjct: 791 ADIDASSAMDTSEPAKEE--DDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAVGSLASQ 847
>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma
mansoni PE=2 SV=2
Length = 420
Score = 342 bits (876), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 189/415 (45%), Positives = 265/415 (63%), Gaps = 58/415 (13%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV 60
M E+T+I VDNSD+MRNGDF PTRLQAQ DAV L+C SK + NPEN +GLL++A++ EV
Sbjct: 1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANT-EV 59
Query: 61 LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 120
L TLT+DV +I ++LH V+P G I F + IRIAHLAL+HRQ ++ KMRI+ F+GSP+ +
Sbjct: 60 LCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILED 119
Query: 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLS 180
E+ELT+LAKRLKKEKVNVDI++FGE N + L+ FI TLNGKDG+GSH+++VA G L
Sbjct: 120 EKELTRLAKRLKKEKVNVDIINFGENETNEQKLSEFIDTLNGKDGTGSHLISVAPGTVLH 179
Query: 181 DALISSPIIQGEDGAGGA-PGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAAE 239
D L++SP++ GEDG+G A G EFG+D EDP+L ALRVSME+QR RQE E
Sbjct: 180 DTLMTSPVVAGEDGSGMAGAGLGLEFGLDGAEDPDLLYALRVSMEDQRMRQEHEV----- 234
Query: 240 GASGADTSA-SSAVPKPTAEAKDAPGDMA---------TAAHPVGGQPDFATMTEEEQIA 289
G++TS ++++P + +++A A T + + D A M+EE+QIA
Sbjct: 235 NGDGSNTSVVATSLPAGSGTSEEAMLQQALAMSMQMNNTESSSLPMDIDLAAMSEEDQIA 294
Query: 290 FAMQMSMQD------------------------------------TQEPAASSSKAPASA 313
+A++MS+Q T+ P SSS +A
Sbjct: 295 YALRMSLQQMGEETTQPTTTTLESDKTIVEPSGVAMDIDQTPTKVTENPNLSSSSGTLAA 354
Query: 314 AASEEAKAEPMDTD-EMVNDAAFLQSVLENLPGVDPQSAEVRHALSSSAEKPAKK 367
A S A P D +++ DA FL+SVL++LPGVD Q+ +VR A+++ + +++
Sbjct: 355 ATS----AVPTSADLDVMYDAEFLESVLQSLPGVDTQNEDVRKAINALTKSQSQR 405
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis
thaliana GN=MBP1 PE=1 SV=1
Length = 386
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 235/399 (58%), Gaps = 44/399 (11%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVE 59
MVLE+TMIC+DNS++MRNGD+ P+RLQAQ +AVNL+C +KT+SNPEN VG+L MA V
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL 119
VL T TSD+G+IL+ +H + G IN I+IA LALKHRQ KN + RII F GSP+
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 120 EERELTKLAKRLKKEKVNVDIVSFGE--EVVNTELLNTFISTLNGKDGSGSHMVTVAVGP 177
E++ L + KRLKK V++DIV+FGE + + L ++ +N D GSH+V V G
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNND--GSHIVHVPSGA 178
Query: 178 H-LSDALISSPIIQGEDGAGG---------APGSSYEFGVDPNEDPELALALRVSMEEQR 227
+ LSD L+S+P+ G++GA G A G ++FGVDPN DPELALALRVSMEE+R
Sbjct: 179 NALSDVLLSTPVFTGDEGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSMEEER 238
Query: 228 ARQ--ESEARRAAEGASGADTSASSAVPKPTAEAKDA---PGDMATA------AHPVGGQ 276
ARQ ++ G D +SA + A D P D +A A VG
Sbjct: 239 ARQEAAAKKAADEAGQKDKDGDTASASQETVARTTDKNAEPMDEDSALLDQAIAMSVGDV 298
Query: 277 PDFATMTEEEQIAFAMQMSMQDTQEPAASSSKAPASAAASEEAKAEPMDTDEMVNDAAFL 336
E++ +A A+QMSM + SS+A + + ++ + AF+
Sbjct: 299 NMSEAADEDQDLALALQMSMSGEE-----SSEATGAG-------------NNLLGNQAFI 340
Query: 337 QSVLENLPGVDPQSAEVRHALSSSAEKPAKKKDEKKEKK 375
SVL +LPGVDP V+ L+S ++ + ++E+ K
Sbjct: 341 SSVLSSLPGVDPNDPAVKELLASLPDESKRTEEEESSSK 379
>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium
discoideum GN=psmD4 PE=2 SV=1
Length = 349
Score = 224 bits (571), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 217/360 (60%), Gaps = 31/360 (8%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVE 59
M LE+T++C+DNS++MRNGDF P+R +AQ+DAVNL+C SKT+SNPE+ V +++MA E
Sbjct: 1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPE 60
Query: 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL 119
VL TLT ++ +ILS +++ NG I+F T ++IA LAL+HRQ + RIIAFVGSP+
Sbjct: 61 VLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKE 120
Query: 120 EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH- 178
+ EL +LAKRLKK V VDI++FGE N++ L FI+ +N D SH++TV GPH
Sbjct: 121 TKEELIQLAKRLKKNGVAVDIINFGEVTENSDKLEAFINDVNNND--ESHLLTVPPGPHI 178
Query: 179 LSDALISSPIIQGEDGAGGAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAA 238
LSD ++ SPI++ G G+ EF ++ + DP+LA+AL++S+EE++ RQE E +
Sbjct: 179 LSDIILQSPIVESGSGQFGS-----EF-INADTDPDLAMALKLSLEEEKQRQERERKARE 232
Query: 239 EGASGADTSASSAVPKPTAEAKDAPGDMATAAHPVGGQPDFATMTEEEQIAFAMQMSMQD 298
E G+ S ++ PT D ++ ++A A+ +SM
Sbjct: 233 EANGGSTNSGTTTTTAPTESNMD------------------VNFEDDPELAEALALSMAT 274
Query: 299 TQEPAASSSKAPASAAASEEAKAEPMDT-DEMVNDAAFLQSVLENLPGVDPQSAEVRHAL 357
+ SS+ S ++ + DT E D FL S L +LPGVDP +++AL
Sbjct: 275 DKMEVQSSTTNTDSQPPQQQQQPPTDDTSSEAFKDQDFLNSTLNSLPGVDPN--RIKNAL 332
>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1
Length = 243
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 160/241 (66%), Gaps = 9/241 (3%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVE 59
MVLE+TMI +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+ + D S +
Sbjct: 1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60
Query: 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL 119
VL+TLT D G+ LS +H + GN F GI+IA LALKHR+ K + RI+AFVGSP+
Sbjct: 61 VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120
Query: 120 EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH- 178
+E+ L +LAKR+KK V +DI+ G E+ N L FI N D H+V++ P
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIG-ELQNESALQHFIDAANSSD--SCHLVSIPPSPQL 177
Query: 179 LSDALISSPIIQGEDGAGGAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAA 238
LSD + SPI QG A + +E+GVDPN D ELALAL +SM E+RARQE A++++
Sbjct: 178 LSDLVNQSPIGQG----VVASQNQFEYGVDPNLDVELALALELSMAEERARQEVAAQKSS 233
Query: 239 E 239
E
Sbjct: 234 E 234
>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3
Length = 268
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 150/236 (63%), Gaps = 13/236 (5%)
Query: 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VE 59
MVLE+T++ +DNS++ RNGDF TR +AQ D+V + +K SNPEN VGL++ A +
Sbjct: 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60
Query: 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL 119
VL+T T++ G+IL+ LH Q G ++ T ++IA L LKHRQ K RI+AFV SP+
Sbjct: 61 VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120
Query: 120 EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH- 178
EL +LAK LKK V VDI++FGE NTELL+ FI+ +N SH++TV GP
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRL 180
Query: 179 LSDALISSPIIQGEDGA-----------GGAPGSSYEFGVDPNEDPELALALRVSM 223
L + + SSPII E + A G+ +FGVDP+ DPELA+ALR+SM
Sbjct: 181 LYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236
>sp|Q2TBV5|TF2H2_BOVIN General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2
PE=2 SV=1
Length = 395
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAM-ADSVEV 60
++ + VD S M + D P RL + NP + +G++ + E
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 61 LATLTSDVGRILSKLHQ---VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV 117
L L+ + + ++ L + + +G + + +A LKH G + +I F S
Sbjct: 117 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIF-SSLT 175
Query: 118 DLEERELTKLAKRLKKEKVNVDIVSFGEEV 147
+ + L K LK K+ V I+ EV
Sbjct: 176 TCDPSNIYDLIKSLKAAKIRVSIIGLSAEV 205
>sp|Q13888|TF2H2_HUMAN General transcription factor IIH subunit 2 OS=Homo sapiens
GN=GTF2H2 PE=1 SV=1
Length = 395
Score = 35.4 bits (80), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAM-ADSVEV 60
++ + VD S M + D P RL + NP + +G++ + E
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 61 LATLTSDVGRILSKLHQ---VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV 117
L L+ + + ++ L + + +G + + IA LKH G + +I F S
Sbjct: 117 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIF-SSLT 175
Query: 118 DLEERELTKLAKRLKKEKVNVDIVSFGEEV 147
+ + L K LK K+ V ++ EV
Sbjct: 176 TCDPSNIYDLIKTLKAAKIRVSVIGLSAEV 205
>sp|A0JN27|TF2H2_RAT General transcription factor IIH subunit 2 OS=Rattus norvegicus
GN=Gtf2h2 PE=2 SV=1
Length = 396
Score = 35.0 bits (79), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAM-ADSVEV 60
++ + VD S M + D P RL + NP + +G++ + E
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 61 LATLTSDVGRILSKLHQ---VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV 117
L L+ + + ++ L + + +G + + +A LKH G + +I F S
Sbjct: 117 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIF-SSLT 175
Query: 118 DLEERELTKLAKRLKKEKVNVDIVSFGEEV 147
+ + L K LK K+ V ++ EV
Sbjct: 176 TCDPSNIYDLIKTLKTAKIRVSVIGLSAEV 205
>sp|Q6P1K8|T2H2L_HUMAN General transcription factor IIH subunit 2-like protein OS=Homo
sapiens GN=GTF2H2C PE=2 SV=1
Length = 395
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAM-ADSVEV 60
++ + VD S M + D P RL + NP + +G++ + E
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 61 LATLTSDVGRILSKLHQ---VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV 117
L L+ + + ++ L + + +G + + +A LKH G + +I F S
Sbjct: 117 LTELSGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIF-SSLT 175
Query: 118 DLEERELTKLAKRLKKEKVNVDIVSFGEEV 147
+ + L K LK K+ V ++ EV
Sbjct: 176 TCDPSNIYDLIKTLKAAKIRVSVIGLSAEV 205
>sp|Q9JIB4|TF2H2_MOUSE General transcription factor IIH subunit 2 OS=Mus musculus
GN=Gtf2h2 PE=1 SV=1
Length = 396
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAM-ADSVEV 60
++ + VD S M + D P RL + NP + +G++ + E
Sbjct: 57 MMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEK 116
Query: 61 LATLTSDVGRILSKLHQ---VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV 117
L L+ + + ++ L + + +G + + +A LKH G + +I F S
Sbjct: 117 LTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIF-SSLT 175
Query: 118 DLEERELTKLAKRLKKEKVNVDIVSFGEEV 147
+ + L K LK K+ V ++ EV
Sbjct: 176 TCDPSNIYDLIKTLKTAKIRVSVIGLSAEV 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.337
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,801,018
Number of Sequences: 539616
Number of extensions: 5633548
Number of successful extensions: 24467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 409
Number of HSP's that attempted gapping in prelim test: 23777
Number of HSP's gapped (non-prelim): 911
length of query: 375
length of database: 191,569,459
effective HSP length: 119
effective length of query: 256
effective length of database: 127,355,155
effective search space: 32602919680
effective search space used: 32602919680
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)