Query psy14660
Match_columns 375
No_of_seqs 231 out of 590
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:24:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2884|consensus 100.0 1.6E-86 3.4E-91 614.6 26.3 239 1-240 1-244 (259)
2 COG5148 RPN10 26S proteasome r 100.0 2.7E-68 5.8E-73 485.0 23.2 232 1-239 1-234 (243)
3 cd01452 VWA_26S_proteasome_sub 100.0 2.8E-55 6E-60 403.1 23.3 185 1-187 1-187 (187)
4 PF04056 Ssl1: Ssl1-like; Int 100.0 4.6E-34 9.9E-39 263.7 15.9 168 9-186 1-172 (193)
5 cd01453 vWA_transcription_fact 100.0 6.4E-30 1.4E-34 232.6 19.6 171 4-184 4-176 (183)
6 KOG2807|consensus 99.9 2E-25 4.3E-30 217.4 15.2 172 5-186 62-235 (378)
7 COG5151 SSL1 RNA polymerase II 99.9 4.5E-21 9.8E-26 186.3 14.0 178 5-188 89-268 (421)
8 PRK13685 hypothetical protein; 99.8 1.3E-19 2.9E-24 178.3 19.8 152 5-159 90-265 (326)
9 PF13519 VWA_2: von Willebrand 99.8 2.8E-18 6E-23 147.6 17.8 164 5-183 1-169 (172)
10 cd01467 vWA_BatA_type VWA BatA 99.8 1.2E-16 2.6E-21 141.5 19.6 151 5-161 4-168 (180)
11 cd01465 vWA_subgroup VWA subgr 99.7 2.6E-16 5.6E-21 137.4 19.6 146 5-159 2-152 (170)
12 cd01458 vWA_ku Ku70/Ku80 N-ter 99.7 5.7E-16 1.2E-20 143.6 16.5 145 4-148 2-175 (218)
13 cd01451 vWA_Magnesium_chelatas 99.7 2.2E-15 4.8E-20 135.2 19.4 159 5-175 2-166 (178)
14 cd01472 vWA_collagen von Wille 99.7 1.9E-15 4.1E-20 133.0 17.8 154 5-173 2-161 (164)
15 cd01466 vWA_C3HC4_type VWA C3H 99.7 3.6E-15 7.8E-20 131.2 15.3 148 6-171 3-154 (155)
16 cd01480 vWA_collagen_alpha_1-V 99.7 7.9E-15 1.7E-19 132.7 17.9 147 5-158 4-161 (186)
17 cd01482 vWA_collagen_alphaI-XI 99.6 2.1E-14 4.5E-19 127.0 18.5 156 5-174 2-162 (164)
18 cd01470 vWA_complement_factors 99.6 2.3E-14 5E-19 130.3 17.2 164 5-179 2-193 (198)
19 TIGR03436 acidobact_VWFA VWFA- 99.6 4E-14 8.6E-19 136.4 19.6 149 5-161 55-232 (296)
20 cd01456 vWA_ywmD_type VWA ywmD 99.6 2.4E-14 5.1E-19 131.2 17.2 148 5-161 22-193 (206)
21 smart00327 VWA von Willebrand 99.6 4.3E-14 9.4E-19 122.0 17.6 148 5-159 3-157 (177)
22 cd01469 vWA_integrins_alpha_su 99.6 3.7E-14 8E-19 127.6 17.7 164 6-179 3-174 (177)
23 cd01471 vWA_micronemal_protein 99.6 3.7E-14 8.1E-19 127.1 17.6 171 5-183 2-182 (186)
24 cd01463 vWA_VGCC_like VWA Volt 99.6 4.5E-14 9.7E-19 127.8 18.1 148 5-161 15-180 (190)
25 cd01477 vWA_F09G8-8_type VWA F 99.6 5.7E-14 1.2E-18 129.6 18.5 146 5-156 21-181 (193)
26 cd00198 vWFA Von Willebrand fa 99.6 1.7E-13 3.6E-18 114.6 18.0 150 5-160 2-155 (161)
27 cd01461 vWA_interalpha_trypsin 99.6 1.6E-13 3.4E-18 119.8 18.1 159 5-181 4-167 (171)
28 cd01450 vWFA_subfamily_ECM Von 99.6 1.7E-13 3.7E-18 117.1 16.7 147 5-159 2-154 (161)
29 cd01474 vWA_ATR ATR (Anthrax T 99.6 1.9E-13 4E-18 123.3 17.7 153 5-175 6-165 (185)
30 cd01475 vWA_Matrilin VWA_Matri 99.6 2.2E-13 4.8E-18 126.8 18.2 159 5-177 4-170 (224)
31 cd01473 vWA_CTRP CTRP for CS 99.6 1.7E-13 3.8E-18 125.7 16.8 147 5-157 2-159 (192)
32 PRK13406 bchD magnesium chelat 99.5 4.7E-13 1E-17 142.0 20.3 165 5-184 403-580 (584)
33 cd01460 vWA_midasin VWA_Midasi 99.5 3.5E-13 7.5E-18 130.6 15.0 136 5-146 62-205 (266)
34 cd01464 vWA_subfamily VWA subf 99.5 9.9E-13 2.1E-17 117.5 16.2 148 2-158 2-159 (176)
35 TIGR00868 hCaCC calcium-activa 99.5 8.5E-13 1.8E-17 144.5 18.3 143 6-161 307-454 (863)
36 cd01455 vWA_F11C1-5a_type Von 99.5 6.6E-13 1.4E-17 123.1 14.2 168 6-188 3-190 (191)
37 cd01476 VWA_integrin_invertebr 99.5 3.9E-12 8.5E-17 111.2 18.0 143 5-156 2-153 (163)
38 cd01454 vWA_norD_type norD typ 99.5 2.2E-12 4.7E-17 115.0 16.4 143 5-156 2-165 (174)
39 PF00092 VWA: von Willebrand f 99.4 1E-11 2.2E-16 108.1 15.6 165 5-181 1-173 (178)
40 TIGR02031 BchD-ChlD magnesium 99.4 1.2E-11 2.5E-16 131.4 19.1 150 5-161 409-574 (589)
41 cd01462 VWA_YIEM_type VWA YIEM 99.4 2.7E-11 5.8E-16 105.2 17.1 136 5-151 2-139 (152)
42 PTZ00441 sporozoite surface pr 99.4 2.1E-11 4.6E-16 128.3 18.7 164 5-175 44-215 (576)
43 cd01457 vWA_ORF176_type VWA OR 99.4 3.4E-11 7.4E-16 110.1 17.0 153 5-160 4-166 (199)
44 TIGR02442 Cob-chelat-sub cobal 99.4 4.4E-11 9.5E-16 128.0 20.1 151 5-161 467-626 (633)
45 cd01481 vWA_collagen_alpha3-VI 99.3 1.3E-10 2.8E-15 104.3 18.9 153 5-174 2-163 (165)
46 PF13768 VWA_3: von Willebrand 99.3 1.9E-10 4.1E-15 100.1 15.4 143 5-161 2-150 (155)
47 COG1240 ChlD Mg-chelatase subu 99.3 2.9E-10 6.2E-15 109.5 17.6 159 5-175 80-246 (261)
48 TIGR03788 marine_srt_targ mari 99.2 6E-10 1.3E-14 118.2 19.1 143 5-159 273-420 (596)
49 PF03731 Ku_N: Ku70/Ku80 N-ter 98.7 2.5E-07 5.4E-12 85.8 14.1 139 5-143 1-172 (224)
50 TIGR00578 ku70 ATP-dependent D 98.6 6.9E-07 1.5E-11 95.3 16.4 143 3-145 10-183 (584)
51 PF10138 vWA-TerF-like: vWA fo 98.5 6.7E-06 1.5E-10 77.1 16.5 172 5-184 3-184 (200)
52 TIGR00627 tfb4 transcription f 98.5 9E-06 2E-10 79.8 18.1 174 6-186 5-220 (279)
53 PRK10997 yieM hypothetical pro 98.4 9E-06 1.9E-10 85.2 17.5 149 5-176 325-476 (487)
54 COG4245 TerY Uncharacterized p 98.4 7.8E-06 1.7E-10 76.1 14.0 146 5-160 5-162 (207)
55 cd01479 Sec24-like Sec24-like: 98.4 9.8E-06 2.1E-10 77.4 14.2 148 5-161 5-212 (244)
56 cd01468 trunk_domain trunk dom 98.3 2.8E-05 6.1E-10 73.6 15.5 149 5-161 5-215 (239)
57 PF04811 Sec23_trunk: Sec23/Se 98.3 2.7E-05 5.9E-10 73.6 15.2 148 5-160 5-216 (243)
58 cd01478 Sec23-like Sec23-like: 98.1 0.00011 2.4E-09 71.5 16.4 145 5-160 5-246 (267)
59 PF03850 Tfb4: Transcription f 98.0 0.00062 1.3E-08 66.8 18.6 171 6-184 4-216 (276)
60 COG2425 Uncharacterized protei 98.0 0.00014 2.9E-09 75.5 14.4 131 6-147 275-408 (437)
61 PF05762 VWA_CoxE: VWA domain 97.8 0.00042 9.1E-09 65.3 13.4 124 5-143 59-187 (222)
62 PLN00162 transport protein sec 97.6 0.00075 1.6E-08 74.5 14.0 144 5-159 126-366 (761)
63 PTZ00395 Sec24-related protein 97.1 0.0042 9E-08 71.5 12.5 133 5-146 954-1155(1560)
64 smart00187 INB Integrin beta s 97.1 0.012 2.7E-07 61.0 14.6 145 5-157 101-312 (423)
65 COG2304 Uncharacterized protei 97.0 0.01 2.2E-07 58.8 12.9 147 4-160 38-191 (399)
66 COG4867 Uncharacterized protei 96.9 0.018 3.9E-07 59.9 13.2 142 3-162 463-624 (652)
67 cd01459 vWA_copine_like VWA Co 96.7 0.087 1.9E-06 51.3 16.0 146 5-156 33-204 (254)
68 PF11265 Med25_VWA: Mediator c 96.6 0.11 2.4E-06 49.9 16.1 156 3-164 13-202 (226)
69 KOG2487|consensus 96.5 0.04 8.6E-07 54.3 12.3 170 5-186 25-238 (314)
70 KOG1984|consensus 96.5 0.039 8.4E-07 61.4 13.2 130 5-143 419-610 (1007)
71 KOG2353|consensus 96.5 0.033 7.2E-07 63.8 13.1 141 5-155 227-383 (1104)
72 PF06707 DUF1194: Protein of u 96.3 0.068 1.5E-06 50.7 12.4 137 5-148 5-159 (205)
73 COG1721 Uncharacterized conser 96.1 0.19 4E-06 51.7 15.1 167 5-184 226-409 (416)
74 PF02809 UIM: Ubiquitin intera 95.5 0.0034 7.4E-08 37.5 -0.1 17 282-298 1-17 (18)
75 KOG2326|consensus 95.5 0.31 6.7E-06 52.6 14.1 144 1-145 2-166 (669)
76 COG5242 TFB4 RNA polymerase II 95.1 0.42 9.1E-06 46.3 12.5 149 29-188 46-227 (296)
77 PF02809 UIM: Ubiquitin intera 94.6 0.0095 2.1E-07 35.6 0.1 16 210-225 2-17 (18)
78 smart00726 UIM Ubiquitin-inter 94.4 0.027 5.8E-07 36.7 1.8 20 210-229 1-20 (26)
79 TIGR01651 CobT cobaltochelatas 94.3 0.62 1.3E-05 50.5 12.7 58 87-147 499-569 (600)
80 PF11775 CobT_C: Cobalamin bio 94.0 2 4.3E-05 41.3 14.2 135 5-147 14-189 (219)
81 PF07002 Copine: Copine; Inte 93.3 2.2 4.9E-05 38.2 12.6 120 22-144 9-146 (146)
82 KOG1327|consensus 93.2 2.9 6.2E-05 45.0 15.2 147 6-157 288-462 (529)
83 PF03853 YjeF_N: YjeF-related 92.7 0.53 1.1E-05 42.6 7.9 57 88-147 8-64 (169)
84 smart00726 UIM Ubiquitin-inter 92.1 0.064 1.4E-06 34.9 0.8 19 283-301 1-19 (26)
85 PF09967 DUF2201: VWA-like dom 91.9 0.93 2E-05 39.3 8.1 75 6-94 1-77 (126)
86 PF11443 DUF2828: Domain of un 91.3 5 0.00011 43.3 14.3 130 3-141 340-480 (534)
87 COG5028 Vesicle coat complex C 89.8 8.1 0.00018 43.3 14.4 132 5-146 278-463 (861)
88 COG4548 NorD Nitric oxide redu 88.5 7 0.00015 42.3 12.5 161 5-184 448-629 (637)
89 PF00362 Integrin_beta: Integr 86.4 1.8 3.8E-05 45.3 6.7 158 5-177 104-327 (426)
90 KOG1986|consensus 86.1 19 0.0004 40.1 14.3 152 7-175 125-363 (745)
91 KOG2327|consensus 85.8 13 0.00028 40.6 12.8 142 2-145 17-184 (602)
92 PLN03049 pyridoxine (pyridoxam 83.1 9.5 0.00021 40.3 10.4 57 88-147 42-98 (462)
93 cd03811 GT1_WabH_like This fam 82.4 14 0.00029 33.8 10.0 53 106-161 188-243 (353)
94 COG0062 Uncharacterized conser 82.3 20 0.00044 34.0 11.3 71 88-161 32-103 (203)
95 cd03794 GT1_wbuB_like This fam 81.9 22 0.00047 33.1 11.3 50 106-158 219-270 (394)
96 cd03814 GT1_like_2 This family 81.5 30 0.00064 32.3 12.2 40 107-146 197-238 (364)
97 KOG2941|consensus 80.9 6.1 0.00013 40.9 7.7 63 102-175 8-70 (444)
98 cd05844 GT1_like_7 Glycosyltra 80.6 17 0.00037 34.8 10.5 51 107-160 188-241 (367)
99 KOG1985|consensus 80.5 37 0.00081 38.5 14.0 138 5-153 296-494 (887)
100 cd04962 GT1_like_5 This family 78.9 61 0.0013 31.0 13.7 76 107-189 197-274 (371)
101 cd03823 GT1_ExpE7_like This fa 76.6 31 0.00066 32.0 10.6 42 106-147 190-232 (359)
102 cd03820 GT1_amsD_like This fam 76.5 35 0.00076 31.1 10.8 53 105-160 176-231 (348)
103 cd03817 GT1_UGDG_like This fam 76.2 39 0.00084 31.4 11.2 53 106-161 201-256 (374)
104 cd03798 GT1_wlbH_like This fam 76.1 26 0.00056 32.2 9.9 51 106-159 201-254 (377)
105 TIGR00197 yjeF_nterm yjeF N-te 74.6 10 0.00022 35.4 6.8 53 88-145 30-82 (205)
106 cd04951 GT1_WbdM_like This fam 74.5 36 0.00079 32.1 10.7 52 107-161 188-242 (360)
107 cd03813 GT1_like_3 This family 73.3 25 0.00054 36.4 9.9 56 106-161 292-351 (475)
108 COG2718 Uncharacterized conser 73.2 38 0.00082 35.5 10.8 109 4-132 246-364 (423)
109 PF03358 FMN_red: NADPH-depend 72.5 9.7 0.00021 32.8 5.8 58 107-164 1-72 (152)
110 cd03808 GT1_cap1E_like This fa 72.3 79 0.0017 28.9 12.2 43 106-148 187-232 (359)
111 cd04922 ACT_AKi-HSDH-ThrA_2 AC 71.3 11 0.00024 27.5 5.1 37 109-145 3-39 (66)
112 PLN03050 pyridoxine (pyridoxam 71.2 14 0.0003 35.8 7.0 53 88-142 36-94 (246)
113 PRK09271 flavodoxin; Provision 68.4 17 0.00036 32.3 6.5 38 107-144 1-38 (160)
114 cd03801 GT1_YqgM_like This fam 67.6 73 0.0016 29.0 10.7 51 106-159 198-251 (374)
115 PRK03692 putative UDP-N-acetyl 67.4 16 0.00034 35.5 6.5 79 88-177 89-167 (243)
116 cd03812 GT1_CapH_like This fam 67.4 96 0.0021 29.3 11.8 123 106-235 191-341 (358)
117 cd03819 GT1_WavL_like This fam 67.4 66 0.0014 30.4 10.7 53 107-159 185-241 (355)
118 PLN02918 pyridoxine (pyridoxam 67.3 78 0.0017 34.5 12.2 55 88-145 118-172 (544)
119 PF01936 NYN: NYN domain; Int 67.0 14 0.00029 31.2 5.4 60 84-156 79-138 (146)
120 cd03807 GT1_WbnK_like This fam 66.9 84 0.0018 28.9 11.1 41 107-147 193-236 (365)
121 PF00731 AIRC: AIR carboxylase 66.6 25 0.00055 31.9 7.2 76 108-189 2-82 (150)
122 PF10221 DUF2151: Cell cycle a 66.4 43 0.00092 37.5 10.2 112 6-117 8-164 (695)
123 COG0528 PyrH Uridylate kinase 66.3 7.9 0.00017 37.7 4.2 126 7-146 7-162 (238)
124 TIGR00288 conserved hypothetic 65.1 60 0.0013 29.8 9.4 52 81-143 86-137 (160)
125 cd04924 ACT_AK-Arch_2 ACT doma 64.1 19 0.00041 26.2 5.0 37 109-145 3-39 (66)
126 COG1432 Uncharacterized conser 63.8 30 0.00065 31.8 7.3 62 80-154 90-151 (181)
127 cd06167 LabA_like LabA_like pr 63.8 28 0.00061 29.8 6.8 76 67-155 53-141 (149)
128 COG3552 CoxE Protein containin 63.1 29 0.00063 36.1 7.6 122 6-141 221-347 (395)
129 cd04919 ACT_AK-Hom3_2 ACT doma 62.5 20 0.00044 26.3 5.0 37 109-145 3-39 (66)
130 PF00448 SRP54: SRP54-type pro 61.8 29 0.00064 32.2 7.0 62 108-175 2-64 (196)
131 cd04916 ACT_AKiii-YclM-BS_2 AC 61.0 23 0.00049 25.8 5.0 37 109-145 3-39 (66)
132 PF04285 DUF444: Protein of un 60.7 1.9E+02 0.0042 30.6 13.3 116 4-136 246-369 (421)
133 cd03809 GT1_mtfB_like This fam 60.4 91 0.002 29.1 10.1 40 107-146 195-237 (365)
134 PRK15427 colanic acid biosynth 60.0 1.1E+02 0.0023 31.2 11.2 51 108-161 223-276 (406)
135 cd03795 GT1_like_4 This family 57.8 90 0.002 29.3 9.7 48 107-159 191-239 (357)
136 PRK10565 putative carbohydrate 56.3 56 0.0012 34.9 8.8 39 107-147 61-99 (508)
137 cd03819 GT1_WavL_like This fam 55.1 1.2E+02 0.0026 28.7 10.1 99 108-221 217-326 (355)
138 COG4547 CobT Cobalamin biosynt 54.8 54 0.0012 35.3 8.1 134 6-147 416-590 (620)
139 cd03799 GT1_amsK_like This is 54.2 59 0.0013 30.6 7.8 52 107-161 179-233 (355)
140 PLN02948 phosphoribosylaminoim 53.5 1.5E+02 0.0032 32.3 11.5 73 105-183 409-483 (577)
141 cd03821 GT1_Bme6_like This fam 53.1 67 0.0015 29.7 7.9 55 105-160 201-258 (375)
142 TIGR00696 wecB_tagA_cpsF bacte 52.8 52 0.0011 30.3 6.9 78 89-177 33-110 (177)
143 PRK06756 flavodoxin; Provision 52.6 24 0.00052 30.5 4.5 39 107-145 2-40 (148)
144 cd03822 GT1_ecORF704_like This 52.4 2E+02 0.0043 26.8 11.9 40 107-146 185-227 (366)
145 COG4981 Enoyl reductase domain 52.1 40 0.00087 36.9 6.8 167 40-217 13-204 (717)
146 PRK10569 NAD(P)H-dependent FMN 51.5 88 0.0019 28.9 8.3 64 108-175 2-75 (191)
147 PF07905 PucR: Purine cataboli 51.2 1.2E+02 0.0026 25.8 8.6 72 107-184 43-116 (123)
148 PRK05325 hypothetical protein; 51.0 1.8E+02 0.0038 30.6 11.1 134 4-162 222-370 (401)
149 PRK15484 lipopolysaccharide 1, 49.7 2.8E+02 0.006 27.7 12.8 41 106-146 192-235 (380)
150 PF13477 Glyco_trans_4_2: Glyc 49.6 69 0.0015 26.5 6.7 27 121-147 10-36 (139)
151 PF00534 Glycos_transf_1: Glyc 49.4 79 0.0017 27.0 7.3 119 105-230 13-163 (172)
152 PF02441 Flavoprotein: Flavopr 49.4 28 0.00061 29.7 4.4 34 107-142 1-34 (129)
153 PRK08105 flavodoxin; Provision 49.2 21 0.00045 31.6 3.6 38 107-144 2-39 (149)
154 TIGR02095 glgA glycogen/starch 48.5 3.2E+02 0.007 28.1 13.0 53 106-159 290-343 (473)
155 cd06533 Glyco_transf_WecG_TagA 48.1 1E+02 0.0022 27.9 8.0 80 88-177 30-109 (171)
156 cd04918 ACT_AK1-AT_2 ACT domai 48.0 47 0.001 24.9 5.0 38 109-147 3-40 (65)
157 cd01840 SGNH_hydrolase_yrhL_li 47.8 1.8E+02 0.004 25.0 10.2 73 69-145 15-89 (150)
158 PF12257 DUF3608: Protein of u 47.7 56 0.0012 32.6 6.7 64 83-146 202-271 (281)
159 PRK05569 flavodoxin; Provision 47.3 36 0.00079 29.0 4.8 38 108-145 3-40 (141)
160 cd04868 ACT_AK-like ACT domain 46.4 56 0.0012 22.3 4.9 36 110-145 3-38 (60)
161 TIGR03567 FMN_reduc_SsuE FMN r 46.4 1.1E+02 0.0023 27.5 7.8 38 108-145 1-40 (171)
162 KOG4465|consensus 46.2 58 0.0012 34.1 6.6 115 6-133 430-547 (598)
163 TIGR02398 gluc_glyc_Psyn gluco 45.8 4.1E+02 0.0089 28.5 15.4 171 53-237 242-464 (487)
164 PRK06703 flavodoxin; Provision 45.4 33 0.00072 29.8 4.3 40 107-146 2-41 (151)
165 PRK05568 flavodoxin; Provision 45.3 43 0.00094 28.5 4.9 39 108-146 3-41 (142)
166 COG0426 FpaA Uncharacterized f 44.5 1.3E+02 0.0027 31.6 8.8 50 108-158 248-297 (388)
167 cd04949 GT1_gtfA_like This fam 44.2 3E+02 0.0066 26.5 11.7 51 107-160 204-257 (372)
168 PF10147 CR6_interact: Growth 44.1 8.5 0.00018 37.0 0.3 22 345-366 172-193 (217)
169 cd03825 GT1_wcfI_like This fam 43.9 2.8E+02 0.0061 26.1 11.9 113 107-227 191-332 (365)
170 PF03808 Glyco_tran_WecB: Glyc 43.8 1.5E+02 0.0032 26.8 8.3 62 110-178 51-112 (172)
171 cd04921 ACT_AKi-HSDH-ThrA-like 42.7 63 0.0014 24.6 5.1 37 109-145 3-39 (80)
172 PRK09739 hypothetical protein; 42.7 1.3E+02 0.0029 27.4 8.0 40 107-146 4-45 (199)
173 cd04936 ACT_AKii-LysC-BS-like_ 42.7 62 0.0013 23.0 4.8 34 110-143 3-36 (63)
174 cd04923 ACT_AK-LysC-DapG-like_ 42.6 62 0.0013 23.0 4.7 34 110-143 3-36 (63)
175 PF04244 DPRP: Deoxyribodipyri 42.3 10 0.00022 36.3 0.6 69 103-184 38-110 (224)
176 COG5148 RPN10 26S proteasome r 42.0 26 0.00056 33.5 3.2 28 331-358 173-215 (243)
177 PF01882 DUF58: Protein of unk 41.8 62 0.0013 25.3 5.0 40 4-43 41-80 (86)
178 cd04915 ACT_AK-Ectoine_2 ACT d 41.8 73 0.0016 24.2 5.2 38 108-146 3-40 (66)
179 PRK09004 FMN-binding protein M 41.2 36 0.00078 30.0 3.9 36 108-143 3-38 (146)
180 KOG4175|consensus 40.9 1.8E+02 0.0039 28.3 8.6 78 42-145 11-103 (268)
181 PF10293 DUF2405: Domain of un 40.6 23 0.0005 32.2 2.5 29 207-235 111-142 (157)
182 TIGR03471 HpnJ hopanoid biosyn 40.3 97 0.0021 32.3 7.5 70 120-190 321-394 (472)
183 cd04892 ACT_AK-like_2 ACT doma 40.2 73 0.0016 22.2 4.8 37 109-145 2-38 (65)
184 cd03364 TOPRIM_DnaG_primases T 39.7 55 0.0012 25.5 4.3 36 107-143 44-79 (79)
185 cd03791 GT1_Glycogen_synthase_ 39.5 3.6E+02 0.0077 27.4 11.3 53 106-159 295-348 (476)
186 smart00275 G_alpha G protein a 39.3 4.2E+02 0.0091 26.7 12.2 50 4-57 209-260 (342)
187 KOG3768|consensus 39.0 81 0.0018 35.0 6.7 93 5-97 3-100 (888)
188 KOG1226|consensus 38.8 87 0.0019 35.4 7.0 127 5-138 134-325 (783)
189 TIGR02690 resist_ArsH arsenica 38.6 74 0.0016 30.5 5.8 69 103-175 23-99 (219)
190 PF14275 DUF4362: Domain of un 38.4 37 0.00081 28.8 3.3 26 139-164 4-29 (98)
191 TIGR00750 lao LAO/AO transport 37.9 1.4E+02 0.0031 29.3 7.8 49 96-145 23-72 (300)
192 TIGR03088 stp2 sugar transfera 37.9 2.7E+02 0.0058 27.0 9.8 52 107-161 194-252 (374)
193 PRK13973 thymidylate kinase; P 37.7 1.3E+02 0.0027 27.9 7.1 52 107-158 3-54 (213)
194 KOG4848|consensus 37.6 14 0.00029 35.2 0.6 19 346-364 184-202 (225)
195 PF03165 MH1: MH1 domain; Int 37.1 45 0.00098 28.4 3.7 38 122-174 3-40 (103)
196 PRK12553 ATP-dependent Clp pro 36.3 1.5E+02 0.0033 27.8 7.4 70 76-147 36-105 (207)
197 TIGR01753 flav_short flavodoxi 36.3 53 0.0011 27.4 4.0 37 109-145 1-37 (140)
198 cd03786 GT1_UDP-GlcNAc_2-Epime 36.1 1.9E+02 0.0041 28.0 8.3 16 212-227 324-339 (363)
199 cd03821 GT1_Bme6_like This fam 36.1 3.5E+02 0.0076 24.9 10.1 128 82-226 210-346 (375)
200 cd07017 S14_ClpP_2 Caseinolyti 34.8 1.7E+02 0.0038 26.2 7.4 67 79-147 13-79 (171)
201 PRK03767 NAD(P)H:quinone oxido 34.7 67 0.0014 29.5 4.7 39 108-146 3-42 (200)
202 KOG2594|consensus 34.7 1.8E+02 0.004 30.3 8.1 118 4-147 2-140 (396)
203 PRK14512 ATP-dependent Clp pro 34.3 1.9E+02 0.004 27.1 7.6 68 78-147 26-93 (197)
204 TIGR01162 purE phosphoribosyla 34.2 1.4E+02 0.0031 27.4 6.6 28 120-147 38-65 (156)
205 cd03825 GT1_wcfI_like This fam 33.9 74 0.0016 30.0 5.0 40 107-146 1-41 (365)
206 PF13911 AhpC-TSA_2: AhpC/TSA 33.8 93 0.002 25.6 5.0 51 124-183 2-52 (115)
207 PRK13803 bifunctional phosphor 33.8 2.4E+02 0.0052 30.9 9.4 83 79-182 296-384 (610)
208 TIGR00493 clpP ATP-dependent C 33.4 2.1E+02 0.0045 26.5 7.8 69 78-148 29-97 (191)
209 PRK14501 putative bifunctional 33.3 4.1E+02 0.0089 29.5 11.3 101 51-164 220-335 (726)
210 PRK00994 F420-dependent methyl 33.2 1.3E+02 0.0028 29.8 6.5 113 48-177 4-119 (277)
211 PRK08993 2-deoxy-D-gluconate 3 33.1 3.9E+02 0.0085 24.6 9.9 22 126-147 171-192 (253)
212 PRK07308 flavodoxin; Validated 33.0 2E+02 0.0044 24.7 7.3 38 108-145 3-40 (146)
213 cd05017 SIS_PGI_PMI_1 The memb 33.0 2.3E+02 0.0051 23.5 7.4 46 120-177 55-100 (119)
214 cd03804 GT1_wbaZ_like This fam 32.8 2.8E+02 0.006 26.6 8.9 38 107-146 195-232 (351)
215 PRK05723 flavodoxin; Provision 32.4 57 0.0012 29.1 3.7 36 107-142 1-36 (151)
216 TIGR00064 ftsY signal recognit 31.8 3.3E+02 0.0071 26.6 9.2 55 105-160 70-126 (272)
217 PF12646 DUF3783: Domain of un 31.8 1E+02 0.0022 23.2 4.5 46 108-157 2-47 (58)
218 cd01672 TMPK Thymidine monopho 31.7 1.6E+02 0.0036 25.6 6.6 47 109-156 2-49 (200)
219 cd05009 SIS_GlmS_GlmD_2 SIS (S 31.4 66 0.0014 27.2 3.8 34 108-142 63-96 (153)
220 PF02635 DrsE: DsrE/DsrF-like 31.4 1.3E+02 0.0027 24.2 5.4 41 108-148 2-47 (122)
221 PRK11914 diacylglycerol kinase 31.2 5E+02 0.011 25.2 10.5 71 106-184 8-82 (306)
222 TIGR02877 spore_yhbH sporulati 31.1 5.3E+02 0.011 27.0 10.8 134 4-161 202-348 (371)
223 PRK12742 oxidoreductase; Provi 31.0 3.3E+02 0.0072 24.4 8.6 59 84-146 105-179 (237)
224 PF13662 Toprim_4: Toprim doma 31.0 32 0.00069 27.0 1.7 35 107-142 47-81 (81)
225 PF02780 Transketolase_C: Tran 30.9 93 0.002 26.1 4.6 49 107-158 10-59 (124)
226 cd03816 GT1_ALG1_like This fam 30.9 2.1E+02 0.0045 29.1 7.9 40 106-146 3-42 (415)
227 PLN02618 tryptophan synthase, 30.7 3.5E+02 0.0076 28.4 9.6 92 71-183 89-186 (410)
228 PRK09267 flavodoxin FldA; Vali 30.3 1.9E+02 0.0041 25.5 6.7 11 207-217 143-153 (169)
229 TIGR01752 flav_long flavodoxin 30.3 1.8E+02 0.0038 25.9 6.6 23 110-132 3-25 (167)
230 PRK07097 gluconate 5-dehydroge 30.2 2.8E+02 0.0062 25.7 8.2 22 126-147 172-193 (265)
231 PRK15045 cellulose biosynthesi 30.1 2.5E+02 0.0055 30.5 8.5 127 28-161 31-165 (519)
232 PRK13608 diacylglycerol glucos 30.1 5.8E+02 0.012 25.7 11.0 21 205-225 318-338 (391)
233 cd04509 PBP1_ABC_transporter_G 30.1 4.1E+02 0.0089 23.9 9.8 72 84-159 17-89 (299)
234 COG3864 Uncharacterized protei 30.0 1.9E+02 0.004 29.9 7.2 86 5-115 263-352 (396)
235 PLN02235 ATP citrate (pro-S)-l 29.9 3.7E+02 0.008 28.5 9.6 135 40-184 263-413 (423)
236 PF00763 THF_DHG_CYH: Tetrahyd 29.6 3.5E+02 0.0077 23.0 8.4 63 107-173 31-93 (117)
237 PF10113 Fibrillarin_2: Fibril 29.4 3.1E+02 0.0066 29.4 8.8 71 83-161 202-272 (505)
238 cd01078 NAD_bind_H4MPT_DH NADP 29.1 4.2E+02 0.0092 23.7 9.5 68 84-161 6-73 (194)
239 cd04912 ACT_AKiii-LysC-EC-like 28.7 1.5E+02 0.0032 22.9 5.1 35 110-144 4-38 (75)
240 PF00483 NTP_transferase: Nucl 28.6 1.2E+02 0.0026 27.8 5.4 96 50-161 2-98 (248)
241 PRK01355 azoreductase; Reviewe 28.6 2.4E+02 0.0053 25.8 7.4 65 107-175 2-86 (199)
242 PF07739 TipAS: TipAS antibiot 28.5 38 0.00082 27.9 1.8 17 345-361 51-67 (118)
243 cd01991 Asn_Synthase_B_C The C 27.8 2E+02 0.0043 26.9 6.8 53 107-161 16-69 (269)
244 PRK14513 ATP-dependent Clp pro 27.7 3E+02 0.0064 26.1 7.8 69 79-149 31-99 (201)
245 PF13768 VWA_3: von Willebrand 27.7 2.4E+02 0.0053 24.0 6.8 12 135-146 34-45 (155)
246 TIGR01754 flav_RNR ribonucleot 27.6 97 0.0021 26.6 4.3 32 108-139 2-33 (140)
247 PF11965 DUF3479: Domain of un 27.6 1.3E+02 0.0029 27.6 5.3 36 108-143 32-67 (164)
248 PF00117 GATase: Glutamine ami 26.6 81 0.0017 28.2 3.7 39 108-146 44-83 (192)
249 cd03805 GT1_ALG2_like This fam 26.5 2.9E+02 0.0062 26.8 7.8 53 107-159 211-274 (392)
250 PLN02871 UDP-sulfoquinovose:DA 26.5 1.2E+02 0.0025 31.3 5.3 39 104-142 56-98 (465)
251 PRK00170 azoreductase; Reviewe 26.4 1.6E+02 0.0035 26.5 5.7 40 107-146 2-46 (201)
252 PRK12551 ATP-dependent Clp pro 26.4 3.4E+02 0.0073 25.5 7.9 67 79-147 29-95 (196)
253 PF02525 Flavodoxin_2: Flavodo 26.1 1.7E+02 0.0036 26.5 5.7 40 107-146 1-44 (199)
254 TIGR03566 FMN_reduc_MsuE FMN r 25.9 2.9E+02 0.0063 24.6 7.2 38 108-145 1-41 (174)
255 PRK13028 tryptophan synthase s 25.8 5E+02 0.011 27.1 9.8 91 71-182 80-176 (402)
256 cd01746 GATase1_CTP_Synthase T 25.4 2.8E+02 0.0061 26.5 7.4 40 108-147 57-96 (235)
257 COG5271 MDN1 AAA ATPase contai 25.1 9.4E+02 0.02 31.5 12.4 129 5-145 4394-4534(4600)
258 PRK08936 glucose-1-dehydrogena 25.1 4.7E+02 0.01 24.1 8.7 22 125-146 170-191 (261)
259 PRK12446 undecaprenyldiphospho 25.1 92 0.002 31.2 4.2 46 85-144 14-59 (352)
260 COG1763 MobB Molybdopterin-gua 25.1 1.3E+02 0.0029 27.4 4.8 40 107-146 2-41 (161)
261 PLN02683 pyruvate dehydrogenas 25.0 2.2E+02 0.0047 29.1 6.8 50 121-177 240-290 (356)
262 PRK11921 metallo-beta-lactamas 24.9 1.2E+02 0.0025 31.0 4.9 51 105-156 246-298 (394)
263 COG2607 Predicted ATPase (AAA+ 24.9 4.7E+02 0.01 26.3 8.8 107 27-146 66-181 (287)
264 PF13362 Toprim_3: Toprim doma 24.7 2.3E+02 0.005 22.6 5.8 41 105-145 40-81 (96)
265 cd07041 STAS_RsbR_RsbS_like Su 24.6 2.1E+02 0.0046 23.0 5.6 67 79-147 15-85 (109)
266 PF00574 CLP_protease: Clp pro 24.2 2.4E+02 0.0053 25.2 6.4 41 106-147 46-86 (182)
267 cd04908 ACT_Bt0572_1 N-termina 24.2 1.5E+02 0.0032 22.0 4.3 32 107-142 2-33 (66)
268 cd02968 SCO SCO (an acronym fo 24.2 3.9E+02 0.0085 22.1 7.3 55 107-161 24-85 (142)
269 PF06972 DUF1296: Protein of u 24.1 38 0.00083 26.4 0.9 12 345-357 32-43 (60)
270 TIGR02826 RNR_activ_nrdG3 anae 24.0 5.1E+02 0.011 23.0 8.6 83 46-142 13-95 (147)
271 TIGR01319 glmL_fam conserved h 24.0 1.8E+02 0.0039 31.2 6.2 52 106-158 120-171 (463)
272 cd04937 ACT_AKi-DapG-BS_2 ACT 23.9 1.7E+02 0.0038 21.6 4.6 34 109-142 3-36 (64)
273 cd01025 TOPRIM_recR TOPRIM_rec 23.9 1.5E+02 0.0032 25.7 4.6 40 108-147 58-97 (112)
274 PRK14489 putative bifunctional 23.8 1.4E+02 0.0031 30.3 5.3 13 149-161 218-230 (366)
275 PF00331 Glyco_hydro_10: Glyco 23.7 1.2E+02 0.0025 30.3 4.6 55 82-145 154-211 (320)
276 PRK07119 2-ketoisovalerate fer 23.7 2.8E+02 0.0062 28.2 7.4 49 120-175 257-306 (352)
277 PRK10307 putative glycosyl tra 23.6 2.9E+02 0.0063 27.5 7.4 52 107-161 229-282 (412)
278 TIGR03088 stp2 sugar transfera 23.5 4.7E+02 0.01 25.3 8.7 60 168-227 273-340 (374)
279 cd04905 ACT_CM-PDT C-terminal 23.5 1.6E+02 0.0034 22.8 4.4 45 99-143 34-78 (80)
280 PF14581 SseB_C: SseB protein 23.2 3.8E+02 0.0081 22.0 6.9 80 58-145 7-90 (108)
281 TIGR02918 accessory Sec system 23.0 4.4E+02 0.0094 28.0 8.9 51 108-161 320-373 (500)
282 PRK09526 lacI lac repressor; R 22.9 6.7E+02 0.014 23.9 10.2 119 7-146 147-278 (342)
283 COG1393 ArsC Arsenate reductas 22.9 2.6E+02 0.0056 24.1 6.0 49 110-161 3-51 (117)
284 PF05621 TniB: Bacterial TniB 22.8 3.7E+02 0.0079 27.3 7.8 81 59-147 100-190 (302)
285 COG0190 FolD 5,10-methylene-te 22.7 8E+02 0.017 24.7 11.5 83 107-193 32-116 (283)
286 PRK11104 hemG protoporphyrinog 22.7 1.2E+02 0.0026 27.6 4.1 37 108-145 2-38 (177)
287 cd04795 SIS SIS domain. SIS (S 22.5 1.9E+02 0.004 21.9 4.6 22 121-142 60-81 (87)
288 PF02875 Mur_ligase_C: Mur lig 22.4 2.3E+02 0.0049 22.3 5.2 9 107-115 41-49 (91)
289 cd06543 GH18_PF-ChiA-like PF-C 22.2 3.3E+02 0.0072 27.0 7.4 37 125-161 158-199 (294)
290 KOG2199|consensus 22.2 34 0.00073 36.0 0.4 20 283-302 164-183 (462)
291 cd00859 HisRS_anticodon HisRS 22.1 1E+02 0.0022 23.2 3.0 25 120-144 13-37 (91)
292 cd03796 GT1_PIG-A_like This fa 22.1 4.1E+02 0.0089 26.4 8.1 53 106-161 192-247 (398)
293 PF00258 Flavodoxin_1: Flavodo 22.0 1.1E+02 0.0023 25.9 3.5 38 111-148 1-38 (143)
294 COG4635 HemG Flavodoxin [Energ 22.0 1.4E+02 0.0031 27.9 4.3 39 108-146 2-40 (175)
295 PRK14974 cell division protein 22.0 8.5E+02 0.018 24.8 12.5 55 106-160 139-194 (336)
296 PRK00726 murG undecaprenyldiph 22.0 1.2E+02 0.0027 29.4 4.3 13 351-363 312-324 (357)
297 TIGR03449 mycothiol_MshA UDP-N 21.9 6.4E+02 0.014 24.7 9.4 56 106-161 218-280 (405)
298 PRK11892 pyruvate dehydrogenas 21.8 2.5E+02 0.0055 29.9 6.8 50 121-177 352-402 (464)
299 cd03820 GT1_amsD_like This fam 21.8 1.8E+02 0.0039 26.4 5.1 38 109-146 2-41 (348)
300 COG1819 Glycosyl transferases, 21.7 1E+02 0.0022 31.8 3.8 40 107-147 2-41 (406)
301 PRK07165 F0F1 ATP synthase sub 21.7 2.6E+02 0.0057 30.3 6.9 42 106-148 143-184 (507)
302 PF12146 Hydrolase_4: Putative 21.7 1.4E+02 0.003 23.6 3.8 40 107-147 16-58 (79)
303 COG3660 Predicted nucleoside-d 21.7 3.2E+02 0.0069 27.8 7.0 77 79-159 133-218 (329)
304 PF10740 DUF2529: Protein of u 21.5 1.5E+02 0.0033 27.7 4.5 34 106-142 82-115 (172)
305 PRK14514 ATP-dependent Clp pro 21.5 2.8E+02 0.006 26.7 6.4 68 79-148 58-125 (221)
306 TIGR01133 murG undecaprenyldip 21.4 1.3E+02 0.0027 28.9 4.2 13 132-144 46-58 (348)
307 TIGR01212 radical SAM protein, 21.4 2.9E+02 0.0063 27.3 6.8 64 120-184 161-228 (302)
308 cd00553 NAD_synthase NAD+ synt 21.3 1.8E+02 0.0039 27.6 5.2 55 105-161 22-78 (248)
309 PF02568 ThiI: Thiamine biosyn 21.3 3.5E+02 0.0076 25.5 7.0 70 107-181 4-78 (197)
310 cd07013 S14_ClpP Caseinolytic 21.1 2.7E+02 0.0058 24.9 6.0 41 105-146 29-69 (162)
311 PF05378 Hydant_A_N: Hydantoin 21.1 2.8E+02 0.0062 25.3 6.2 39 120-158 132-173 (176)
312 PRK07667 uridine kinase; Provi 21.1 3E+02 0.0064 25.0 6.4 39 107-145 16-55 (193)
313 PF04459 DUF512: Protein of un 21.0 1.3E+02 0.0029 28.5 4.2 66 105-175 96-169 (204)
314 PRK07313 phosphopantothenoylcy 21.0 1.3E+02 0.0028 27.8 4.0 34 107-142 2-35 (182)
315 PRK10307 putative glycosyl tra 21.0 5.9E+02 0.013 25.2 9.0 125 82-226 236-374 (412)
316 PRK04155 chaperone protein Hch 21.0 4.6E+02 0.01 26.0 8.1 26 120-145 75-100 (287)
317 PRK12743 oxidoreductase; Provi 20.8 6.6E+02 0.014 23.0 10.2 21 126-146 166-186 (256)
318 CHL00028 clpP ATP-dependent Cl 20.6 3.2E+02 0.007 25.7 6.6 68 79-148 34-101 (200)
319 PF06180 CbiK: Cobalt chelatas 20.6 5.6E+02 0.012 25.2 8.5 72 112-183 106-189 (262)
320 PRK12859 3-ketoacyl-(acyl-carr 20.5 6.5E+02 0.014 23.2 8.7 21 126-146 181-201 (256)
321 PF03033 Glyco_transf_28: Glyc 20.5 1.6E+02 0.0035 24.3 4.2 54 110-176 1-54 (139)
322 cd03811 GT1_WabH_like This fam 20.4 1.9E+02 0.004 26.3 4.9 39 108-146 1-40 (353)
323 COG0761 lytB 4-Hydroxy-3-methy 20.4 2.4E+02 0.0051 28.6 5.8 77 61-143 165-246 (294)
324 PRK11145 pflA pyruvate formate 20.4 2.2E+02 0.0048 26.6 5.5 50 109-158 73-122 (246)
325 PRK06696 uridine kinase; Valid 20.3 3.2E+02 0.0069 25.3 6.5 36 107-142 21-57 (223)
326 PF13458 Peripla_BP_6: Peripla 20.3 2.8E+02 0.006 26.3 6.3 72 60-144 6-78 (343)
327 TIGR00272 DPH2 diphthamide bio 20.2 2.6E+02 0.0056 30.1 6.5 76 107-190 282-358 (496)
328 cd06326 PBP1_STKc_like Type I 20.2 5.2E+02 0.011 24.5 8.1 59 85-145 19-78 (336)
329 COG1922 WecG Teichoic acid bio 20.1 4.9E+02 0.011 25.7 7.9 98 86-193 90-194 (253)
330 PF05990 DUF900: Alpha/beta hy 20.1 4.8E+02 0.01 24.7 7.8 79 106-184 17-112 (233)
No 1
>KOG2884|consensus
Probab=100.00 E-value=1.6e-86 Score=614.61 Aligned_cols=239 Identities=69% Similarity=1.065 Sum_probs=228.6
Q ss_pred CCcceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccC
Q psy14660 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQ 79 (375)
Q Consensus 1 m~lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~ 79 (375)
||||+||||||||+|||||||.||||+||+++|+++|+.|+++||||+||||++++ .+.||+|||+|.++|+++||.+.
T Consensus 1 MvlEatmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~ 80 (259)
T KOG2884|consen 1 MVLEATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQ 80 (259)
T ss_pred CCcceEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999 69999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++|+++|.+||++|+++||||++|++++|||+|+|||+.+++++|+++||+|||++|.||||.||+...|+++|.+||++
T Consensus 81 ~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida 160 (259)
T KOG2884|consen 81 PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDA 160 (259)
T ss_pred cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hCCCCCCCeeEEEecCCCchhhHhhhCCcccCCCCCCC----CCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHHHHHHH
Q psy14660 160 LNGKDGSGSHMVTVAVGPHLSDALISSPIIQGEDGAGG----APGSSYEFGVDPNEDPELALALRVSMEEQRARQESEAR 235 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~g~~Lsd~l~sspi~~~~~~~~~----~~~~~~~fgvdp~~DPELa~Alr~Sleee~~rq~~~~~ 235 (375)
+|++ +++||||+||||+.|+|+|++|||+.||+|+++ +.|..|+|||||++|||||||||+||||||+|||++++
T Consensus 161 ~N~~-~~gshlv~Vppg~~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~fgvdp~~DPELAlALRlSMEEer~rQe~aa~ 239 (259)
T KOG2884|consen 161 LNGK-GDGSHLVSVPPGPLLSDALLSSPIIQGEDGGAAAGLGANGMDFEFGVDPEDDPELALALRLSMEEERARQERAAQ 239 (259)
T ss_pred hcCC-CCCceEEEeCCCccHHHHhhcCceeccCcccccccccccccccccCCCcccCHHHHHHHHhhHHHHHHHHHHHhh
Confidence 9997 679999999999999999999999999976643 33457999999999999999999999999999998877
Q ss_pred HHhcc
Q psy14660 236 RAAEG 240 (375)
Q Consensus 236 ~~~~~ 240 (375)
+++.+
T Consensus 240 ~~a~~ 244 (259)
T KOG2884|consen 240 KAAAE 244 (259)
T ss_pred hcccc
Confidence 65543
No 2
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-68 Score=484.96 Aligned_cols=232 Identities=47% Similarity=0.703 Sum_probs=218.3
Q ss_pred CCcceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccC
Q psy14660 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQ 79 (375)
Q Consensus 1 m~lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~ 79 (375)
||||+||++||||+||+||||.||||+||+++|..+++.||+.||||+||||+.++ .+.|++|||.++++|+++||.+.
T Consensus 1 mvlEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~ 80 (243)
T COG5148 1 MVLEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIR 80 (243)
T ss_pred CCcceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
..|+.++..+|++|+++||||+||.+|+|||+|||||+.+++++++.+||+|||+||+|+||.||+.. |..-|..||++
T Consensus 81 ~~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~esedeLirlak~lkknnVAidii~fGE~~-n~~~l~efIda 159 (243)
T COG5148 81 LHGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQESEDELIRLAKQLKKNNVAIDIIFFGEAA-NMAGLFEFIDA 159 (243)
T ss_pred ccCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccccHHHHHHHHHHHHhcCeeEEEEehhhhh-hhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999875 88999999999
Q ss_pred hCCCCCCCeeEEEecCCCc-hhhHhhhCCcccCCCCCCCCCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHh
Q psy14660 160 LNGKDGSGSHMVTVAVGPH-LSDALISSPIIQGEDGAGGAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAA 238 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~g~~-Lsd~l~sspi~~~~~~~~~~~~~~~~fgvdp~~DPELa~Alr~Sleee~~rq~~~~~~~~ 238 (375)
+|..+ .||++++||+|. |+++|-+|||-.|-- |+.+.|||||||++|||||||||+||||||+||+.++++..
T Consensus 160 ~N~~d--sshl~~~~P~p~ll~~~~~~spig~g~~----g~~~~~e~gvDp~lDpELA~AlrLSmeEek~rQe~~~qk~~ 233 (243)
T COG5148 160 TNFSD--SSHLEVKPPNPELLDRVLPFSPIGQGVV----GDDLQLEYGVDPNLDPELAEALRLSMEEEKKRQEVAAQKSS 233 (243)
T ss_pred hcccc--ceeeEecCCCHHHHHhhccCCccccccc----cCccceecCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhh
Confidence 99865 799999999996 899999999833221 33347999999999999999999999999999999888765
Q ss_pred c
Q psy14660 239 E 239 (375)
Q Consensus 239 ~ 239 (375)
+
T Consensus 234 e 234 (243)
T COG5148 234 E 234 (243)
T ss_pred h
Confidence 3
No 3
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=100.00 E-value=2.8e-55 Score=403.07 Aligned_cols=185 Identities=69% Similarity=1.055 Sum_probs=180.8
Q ss_pred CCcceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccC
Q psy14660 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQ 79 (375)
Q Consensus 1 m~lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~ 79 (375)
|+|||+|||||+|+||+|+||+||||++|+++++.|+..||++||+++||||+|+| .+++++|||+|+++++..|+.+.
T Consensus 1 m~~ea~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~ 80 (187)
T cd01452 1 MVLEATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQ 80 (187)
T ss_pred CCceEEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++|+++|++||++|+.+|||++++++++|||||+||+.+++++++.+++++|||+||+|+|||||+..+|.+||+.|+++
T Consensus 81 ~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~ 160 (187)
T cd01452 81 PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDA 160 (187)
T ss_pred CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeeEEEecCCCc-hhhHhhhCC
Q psy14660 160 LNGKDGSGSHMVTVAVGPH-LSDALISSP 187 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~g~~-Lsd~l~ssp 187 (375)
||+++ +||||+||||++ |||+|++||
T Consensus 161 ~~~~~--~s~~~~~~~~~~~lsd~~~~s~ 187 (187)
T cd01452 161 VNGKD--GSHLVSVPPGENLLSDALLSSP 187 (187)
T ss_pred hcCCC--CceEEEeCCCCchhHHHhhcCC
Confidence 99865 699999999996 899999998
No 4
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=100.00 E-value=4.6e-34 Score=263.75 Aligned_cols=168 Identities=25% Similarity=0.419 Sum_probs=150.9
Q ss_pred EEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhccc---CCCCCc
Q psy14660 9 CVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQV---QPNGNI 84 (375)
Q Consensus 9 ~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l---~~~G~~ 84 (375)
+||+|+||+++||+||||.++.++++.|++.||++||.+++|||+|.++ ++++++|++++.++.++|.++ .|.|++
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 5899999999999999999999999999999999999999999999996 999999999999999988776 599999
Q ss_pred cHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCC
Q psy14660 85 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKD 164 (375)
Q Consensus 85 ~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~ 164 (375)
+|+|||++|+.+|||.+.+.+ ++||+++||..++|++++++++++||+++|+|+||||+.|++.+++| ++.+|
T Consensus 81 SLqN~Le~A~~~L~~~p~~~s-rEIlvi~gSl~t~Dp~di~~ti~~l~~~~IrvsvI~laaEv~I~k~i---~~~T~--- 153 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPSHGS-REILVIFGSLTTCDPGDIHETIESLKKENIRVSVISLAAEVYICKKI---CKETG--- 153 (193)
T ss_pred hHHHHHHHHHHHHhhCccccc-eEEEEEEeecccCCchhHHHHHHHHHHcCCEEEEEEEhHHHHHHHHH---HHhhC---
Confidence 999999999999999998766 48888889999999999999999999999999999999998755555 46654
Q ss_pred CCCeeEEEecCCCchhhHhhhC
Q psy14660 165 GSGSHMVTVAVGPHLSDALISS 186 (375)
Q Consensus 165 ~~~Sh~v~vp~g~~Lsd~l~ss 186 (375)
|.|.|.+.+ .||.|.|++.
T Consensus 154 --G~y~V~lde-~H~~~lL~~~ 172 (193)
T PF04056_consen 154 --GTYGVILDE-DHFKELLMEH 172 (193)
T ss_pred --CEEEEecCH-HHHHHHHHhh
Confidence 466666655 5699988866
No 5
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.97 E-value=6.4e-30 Score=232.58 Aligned_cols=171 Identities=21% Similarity=0.366 Sum_probs=146.5
Q ss_pred ceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEe-cCceeEEecCCCCHHHHHHhhccc-CCC
Q psy14660 4 ESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAM-ADSVEVLATLTSDVGRILSKLHQV-QPN 81 (375)
Q Consensus 4 EaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~-ag~a~vl~pLT~D~~~Il~~L~~l-~~~ 81 (375)
=.+||+||+|.||.++||.||||++++.++..|++.+++.||.++||||+| ++.+++++|||.|+..++..|+.+ .+.
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~~ 83 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTARECS 83 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCCC
Confidence 368999999999999999999999999999999999999999999999999 688999999999999999999987 667
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
|++++..||++|...|++++. ...++||||+++..++++.++..++++++++||+|++||||.+. +.|+++.++++
T Consensus 84 G~t~l~~aL~~A~~~l~~~~~-~~~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~---~~L~~ia~~tg 159 (183)
T cd01453 84 GEPSLQNGLEMALESLKHMPS-HGSREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM---HICKEICKATN 159 (183)
T ss_pred CchhHHHHHHHHHHHHhcCCc-cCceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH---HHHHHHHHHhC
Confidence 889999999999999987643 23467888887765566777778999999999999999999764 67888888754
Q ss_pred CCCCCCeeEEEecCCCchhhHhh
Q psy14660 162 GKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 162 ~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
|++|....+ .+|.+++.
T Consensus 160 -----G~~~~~~~~-~~l~~~~~ 176 (183)
T cd01453 160 -----GTYKVILDE-THLKELLL 176 (183)
T ss_pred -----CeeEeeCCH-HHHHHHHH
Confidence 567765544 46777554
No 6
>KOG2807|consensus
Probab=99.93 E-value=2e-25 Score=217.39 Aligned_cols=172 Identities=20% Similarity=0.359 Sum_probs=151.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhcccC-CCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQ-PNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l~-~~G 82 (375)
-.+|+||.|++|...||+|||+..+.++++.|+..||++||.+|+|||++.++ +.+++-+|+++..+..+|..+. ++|
T Consensus 62 hl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~~g 141 (378)
T KOG2807|consen 62 HLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTECSG 141 (378)
T ss_pred eEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhcccccCC
Confidence 46899999999999999999999999999999999999999999999999986 9999999999999999999986 889
Q ss_pred CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCC
Q psy14660 83 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNG 162 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~ 162 (375)
..+|+|||++|+..|||.+.+.+| .|+|+++|..+.||+++.+++++||+.+|+|.|||+..++. +++.+.+++|
T Consensus 142 ~fSLqNaLe~a~~~Lk~~p~H~sR-EVLii~sslsT~DPgdi~~tI~~lk~~kIRvsvIgLsaEv~---icK~l~kaT~- 216 (378)
T KOG2807|consen 142 DFSLQNALELAREVLKHMPGHVSR-EVLIIFSSLSTCDPGDIYETIDKLKAYKIRVSVIGLSAEVF---ICKELCKATG- 216 (378)
T ss_pred ChHHHHHHHHHHHHhcCCCcccce-EEEEEEeeecccCcccHHHHHHHHHhhCeEEEEEeechhHH---HHHHHHHhhC-
Confidence 999999999999999999987776 55555578888999999999999999999999999999985 5555567765
Q ss_pred CCCCCeeEEEecCCCchhhHhhhC
Q psy14660 163 KDGSGSHMVTVAVGPHLSDALISS 186 (375)
Q Consensus 163 ~~~~~Sh~v~vp~g~~Lsd~l~ss 186 (375)
|-+.|.|.++ ||.+.+...
T Consensus 217 ----G~Y~V~lDe~-HlkeLl~e~ 235 (378)
T KOG2807|consen 217 ----GRYSVALDEG-HLKELLLEH 235 (378)
T ss_pred ----CeEEEEeCHH-HHHHHHHhc
Confidence 3566777665 466665544
No 7
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=99.86 E-value=4.5e-21 Score=186.31 Aligned_cols=178 Identities=17% Similarity=0.300 Sum_probs=154.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhccc-CCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQV-QPNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l-~~~G 82 (375)
..+|+||+|++|...||.|+|+.-+.+.+.-|+..||.+||.+++|||.+.++ +...+.+.+|+..++..|..+ .++|
T Consensus 89 hl~l~lD~Seam~e~Df~p~r~a~vikya~~Fv~eFf~qNPiSqlsii~irdg~a~~~s~~~gnpq~hi~~lkS~rd~~g 168 (421)
T COG5151 89 HLHLILDVSEAMDESDFLPTRRANVIKYAEGFVPEFFSQNPISQLSIISIRDGCAKYTSSMDGNPQAHIGQLKSKRDCSG 168 (421)
T ss_pred eeEEEEEhhhhhhhhhccchHHHHHHHHHHHHhHHHhccCCchheeeeehhhhHHHHhhhcCCCHHHHHHHhhcccccCC
Confidence 46899999999999999999999999999999999999999999999999997 788999999999999999998 5899
Q ss_pred CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCC
Q psy14660 83 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNG 162 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~ 162 (375)
..+|+|||++|+..|-+.+.+..| .|+|++||-.+.|++++.+++.+|...+|+|.+||+..++ .+++.+++++|+
T Consensus 169 nfSLqNaLEmar~~l~~~~~H~tr-EvLiifgS~st~DPgdi~~tid~Lv~~~IrV~~igL~aev---aicKeickaTn~ 244 (421)
T COG5151 169 NFSLQNALEMARIELMKNTMHGTR-EVLIIFGSTSTRDPGDIAETIDKLVAYNIRVHFIGLCAEV---AICKEICKATNS 244 (421)
T ss_pred ChhHHhHHHHhhhhhcccccccce-EEEEEEeecccCCCccHHHHHHHHHhhceEEEEEeehhHH---HHHHHHHhhcCc
Confidence 999999999999888776665554 5666668988889999999999999999999999999986 677888899998
Q ss_pred CCCCCeeEEEecCCCchhhHhhhCCc
Q psy14660 163 KDGSGSHMVTVAVGPHLSDALISSPI 188 (375)
Q Consensus 163 ~~~~~Sh~v~vp~g~~Lsd~l~sspi 188 (375)
++ .|.++|.|..| ||++.+..+.+
T Consensus 245 ~~-e~~y~v~vde~-Hl~el~~E~~~ 268 (421)
T COG5151 245 ST-EGRYYVPVDEG-HLSELMRELSH 268 (421)
T ss_pred Cc-CceeEeeecHH-HHHHHHHhcCC
Confidence 65 35555555555 57776665544
No 8
>PRK13685 hypothetical protein; Provisional
Probab=99.84 E-value=1.3e-19 Score=178.25 Aligned_cols=152 Identities=24% Similarity=0.298 Sum_probs=123.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCCCCc
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNI 84 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~~ 84 (375)
.+|||||.|.||...|+.|+||+.++.++..|++. .+|.++||||+|++.+++++|+|.|+..+...|..+.+.|.+
T Consensus 90 ~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~---l~~~d~vglv~Fa~~a~~~~p~t~d~~~l~~~l~~l~~~~~T 166 (326)
T PRK13685 90 VVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADE---LTPGINLGLIAFAGTATVLVSPTTNREATKNAIDKLQLADRT 166 (326)
T ss_pred eEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHh---CCCCCeEEEEEEcCceeecCCCCCCHHHHHHHHHhCCCCCCc
Confidence 58999999999999999999999999999999974 367899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhcc------CCCCCccEEEEEEcCCCCCC-----hHHHHHHHHHHHhCCcEEEEEEecCCc------
Q psy14660 85 NFMTGIRIAHLALKHR------QGKNHKMRIIAFVGSPVDLE-----ERELTKLAKRLKKEKVNVDIVSFGEEV------ 147 (375)
Q Consensus 85 ~l~~gI~vA~laLKhr------~~k~~~~RIIvfvgSp~~~d-----~~~l~~lakkLKk~~I~VdiIgfG~e~------ 147 (375)
+++.+|..|...++.. ......++||+|+++..+.. +......++.+++.||+|++||||+..
T Consensus 167 ~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~ 246 (326)
T PRK13685 167 ATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEIN 246 (326)
T ss_pred chHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcC
Confidence 9999999998777521 01223456777765543321 133456788899999999999999853
Q ss_pred -------chHHHHHHHHHh
Q psy14660 148 -------VNTELLNTFIST 159 (375)
Q Consensus 148 -------~n~~kL~~fi~~ 159 (375)
.+.+.|+++.+.
T Consensus 247 g~~~~~~~d~~~L~~iA~~ 265 (326)
T PRK13685 247 GQRQPVPVDDESLKKIAQL 265 (326)
T ss_pred CceeeecCCHHHHHHHHHh
Confidence 244666766665
No 9
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.80 E-value=2.8e-18 Score=147.59 Aligned_cols=164 Identities=26% Similarity=0.377 Sum_probs=129.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCC----
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP---- 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~---- 80 (375)
.+|||||+|.||...|..++|+..++.++..|+.. .|.++|||+.|++.+.++.|+|.|...+...|.++.+
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~l~~f~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~ 76 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLAN----LPGDRVGLVSFSDSSRTLSPLTSDKDELKNALNKLSPQGMP 76 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHH----HTTSEEEEEEESTSCEEEEEEESSHHHHHHHHHTHHHHG--
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHH----CCCCEEEEEEecccccccccccccHHHHHHHhhcccccccC
Confidence 37999999999999999999999999999999986 3788999999999999999999999999999998854
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
.|++.+..||+.|...|.... .++|+|||+++.. +.......++.+++.||+|++|+||......+.|+.+++..
T Consensus 77 ~~~t~~~~al~~a~~~~~~~~---~~~~~iv~iTDG~--~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~t 151 (172)
T PF13519_consen 77 GGGTNLYDALQEAAKMLASSD---NRRRAIVLITDGE--DNSSDIEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEAT 151 (172)
T ss_dssp SSS--HHHHHHHHHHHHHC-S---SEEEEEEEEES-T--THCHHHHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHHHhCC---CCceEEEEecCCC--CCcchhHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhc
Confidence 688999999999998886543 3466777776643 33445568999999999999999999877668999998874
Q ss_pred CCCCCCCeeEEEe-cCCCchhhHh
Q psy14660 161 NGKDGSGSHMVTV-AVGPHLSDAL 183 (375)
Q Consensus 161 n~~~~~~Sh~v~v-p~g~~Lsd~l 183 (375)
|-+|+.+ ..+..|.+++
T Consensus 152 ------gG~~~~~~~~~~~l~~~~ 169 (172)
T PF13519_consen 152 ------GGRYFHVDNDPEDLDDAF 169 (172)
T ss_dssp ------EEEEEEE-SSSHHHHHHH
T ss_pred ------CCEEEEecCCHHHHHHHH
Confidence 3578887 3444566654
No 10
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.75 E-value=1.2e-16 Score=141.54 Aligned_cols=151 Identities=20% Similarity=0.281 Sum_probs=117.3
Q ss_pred eEEEEEeCCccccCCCC-CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccC---C
Q psy14660 5 STMICVDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ---P 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~-~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~---~ 80 (375)
.++||||.|.||...|| .|+||..++.++..|+. ..|.++||||+|++.+.+++|+|.+...+...|..+. +
T Consensus 4 ~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~----~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 79 (180)
T cd01467 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFID----RRENDRIGLVVFAGAAFTQAPLTLDRESLKELLEDIKIGLA 79 (180)
T ss_pred eEEEEEECCcccccccCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEEcCCeeeccCCCccHHHHHHHHHHhhhccc
Confidence 47999999999999999 68999999888877765 4688999999999999999999999998888887774 6
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC----------cchH
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE----------VVNT 150 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e----------~~n~ 150 (375)
+|++++..+|..|...+.... ..++.||||+++..+.........++.+++.||.|++|+||.. ....
T Consensus 80 ~g~T~l~~al~~a~~~l~~~~--~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~ 157 (180)
T cd01467 80 GQGTAIGDAIGLAIKRLKNSE--AKERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDE 157 (180)
T ss_pred CCCCcHHHHHHHHHHHHHhcC--CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCH
Confidence 788999999999988776543 2334455554443333333345556777889999999999982 2346
Q ss_pred HHHHHHHHhhC
Q psy14660 151 ELLNTFISTLN 161 (375)
Q Consensus 151 ~kL~~fi~~vn 161 (375)
+.|+.+.+..+
T Consensus 158 ~~l~~la~~tg 168 (180)
T cd01467 158 DSLVEIADKTG 168 (180)
T ss_pred HHHHHHHHhcC
Confidence 78888887744
No 11
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.74 E-value=2.6e-16 Score=137.44 Aligned_cols=146 Identities=16% Similarity=0.319 Sum_probs=118.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~~G 82 (375)
.++||||+|.||.. .||+.++.++..++.. .++.++|||++|++.+.+++++| .++..++..|..+.+.|
T Consensus 2 ~~~~vlD~S~SM~~-----~~~~~~k~a~~~~~~~---l~~~~~v~li~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~g 73 (170)
T cd01465 2 NLVFVIDRSGSMDG-----PKLPLVKSALKLLVDQ---LRPDDRLAIVTYDGAAETVLPATPVRDKAAILAAIDRLTAGG 73 (170)
T ss_pred cEEEEEECCCCCCC-----hhHHHHHHHHHHHHHh---CCCCCEEEEEEecCCccEEecCcccchHHHHHHHHHcCCCCC
Confidence 37899999999975 2688888899888874 57789999999999988888877 48888999999999999
Q ss_pred CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC---hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 83 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE---ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d---~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++++..+|+.|...++++..+...++||+|+++..+++ ...+...++++++.+|.|++|+||. ..+...|+.|...
T Consensus 74 ~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~-~~~~~~l~~ia~~ 152 (170)
T cd01465 74 STAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD-NYNEDLMEAIADA 152 (170)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC-CcCHHHHHHHHhc
Confidence 99999999999988876543233356777766644332 4667778888899999999999994 4678899988764
No 12
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=99.70 E-value=5.7e-16 Score=143.58 Aligned_cols=145 Identities=19% Similarity=0.273 Sum_probs=116.6
Q ss_pred ceEEEEEeCCccccCC-CC-CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc----------eeEEecC-CCCHHH
Q psy14660 4 ESTMICVDNSDFMRNG-DF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS----------VEVLATL-TSDVGR 70 (375)
Q Consensus 4 EaivI~lDnSesMrng-D~-~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~----------a~vl~pL-T~D~~~ 70 (375)
|++++|||+|.||... |. .|+||+.++.++..|++.|.-.+|.++||||.|+.. .+++.|| |.|...
T Consensus 2 e~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~ 81 (218)
T cd01458 2 ESVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAER 81 (218)
T ss_pred cEEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHH
Confidence 8999999999999855 33 499999999999999999888999999999999974 2467877 777776
Q ss_pred HHHhhcccCC-----------CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC-----ChHHHHHHHHHHHhC
Q psy14660 71 ILSKLHQVQP-----------NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL-----EERELTKLAKRLKKE 134 (375)
Q Consensus 71 Il~~L~~l~~-----------~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~-----d~~~l~~lakkLKk~ 134 (375)
+...++.+.+ .++++|..||.+|...|++...+...+|||+|+...... +...+..+++.|++.
T Consensus 82 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~ 161 (218)
T cd01458 82 VEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDK 161 (218)
T ss_pred HHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 6555554433 357899999999999998844444567899998643321 245677889999999
Q ss_pred CcEEEEEEecCCcc
Q psy14660 135 KVNVDIVSFGEEVV 148 (375)
Q Consensus 135 ~I~VdiIgfG~e~~ 148 (375)
||.|++|++|....
T Consensus 162 gI~i~~i~i~~~~~ 175 (218)
T cd01458 162 GIELELFPLSSPGK 175 (218)
T ss_pred CcEEEEEecCCCCC
Confidence 99999999999763
No 13
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.69 E-value=2.2e-15 Score=135.20 Aligned_cols=159 Identities=17% Similarity=0.235 Sum_probs=121.7
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
-++||||.|.||..+ +||+..+.++..|+... .++.++||||+|.+. +++++|+|.+...+...|..+.++|.
T Consensus 2 ~v~lvlD~SgSM~~~----~rl~~ak~a~~~~~~~~--~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~ 75 (178)
T cd01451 2 LVIFVVDASGSMAAR----HRMAAAKGAVLSLLRDA--YQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGG 75 (178)
T ss_pred eEEEEEECCccCCCc----cHHHHHHHHHHHHHHHh--hcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCC
Confidence 378999999999753 79999999999888643 357899999999985 89999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhcc-CCCCCccEEEEEEcCCCCC--Ch-HHH-HHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 84 INFMTGIRIAHLALKHR-QGKNHKMRIIAFVGSPVDL--EE-REL-TKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr-~~k~~~~RIIvfvgSp~~~--d~-~~l-~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
|++..+|..|...++.+ ..+..++.||++.++..++ ++ ... ..+++++++.+|.|++|++|....+...|+++.+
T Consensus 76 T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~ 155 (178)
T cd01451 76 TPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLAR 155 (178)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHH
Confidence 99999999999877221 1112234555555443332 22 223 6788999999999999999986556778999988
Q ss_pred hhCCCCCCCeeEEEecC
Q psy14660 159 TLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 159 ~vn~~~~~~Sh~v~vp~ 175 (375)
+.+ -+|+.++.
T Consensus 156 ~tg------G~~~~~~d 166 (178)
T cd01451 156 ALG------GQYVRLPD 166 (178)
T ss_pred HcC------CeEEEcCc
Confidence 743 35555544
No 14
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.69 E-value=1.9e-15 Score=132.98 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=120.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCC-C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQP-N 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~-~ 81 (375)
.++|+||.|.||.. .+|..++.++..++..+...+...++|||+|++.+.++++++ .|...+...|..+.+ +
T Consensus 2 Dvv~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 76 (164)
T cd01472 2 DIVFLVDGSESIGL-----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEFYLNTYRSKDDVLEAVKNLRYIG 76 (164)
T ss_pred CEEEEEeCCCCCCH-----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 47999999999974 689999999999998865455677999999999999999999 899999999999986 6
Q ss_pred CCccHHHHHHHHHHHhhcc---CCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 82 GNINFMTGIRIAHLALKHR---QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr---~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
|++++..||..|...+... ..++. .++|||+.+... .......+..+++.||.|++||+|.. +...|+.+..
T Consensus 77 g~T~~~~al~~a~~~l~~~~~~~~~~~-~~~iiliTDG~~--~~~~~~~~~~l~~~gv~i~~ig~g~~--~~~~L~~ia~ 151 (164)
T cd01472 77 GGTNTGKALKYVRENLFTEASGSREGV-PKVLVVITDGKS--QDDVEEPAVELKQAGIEVFAVGVKNA--DEEELKQIAS 151 (164)
T ss_pred CCchHHHHHHHHHHHhCCcccCCCCCC-CEEEEEEcCCCC--CchHHHHHHHHHHCCCEEEEEECCcC--CHHHHHHHHC
Confidence 7899999999999877653 12233 455555544432 22345567788999999999999986 6788888865
Q ss_pred hhCCCCCCCeeEEEe
Q psy14660 159 TLNGKDGSGSHMVTV 173 (375)
Q Consensus 159 ~vn~~~~~~Sh~v~v 173 (375)
. +.+.|...+
T Consensus 152 ~-----~~~~~~~~~ 161 (164)
T cd01472 152 D-----PKELYVFNV 161 (164)
T ss_pred C-----CchheEEec
Confidence 4 224676654
No 15
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.65 E-value=3.6e-15 Score=131.25 Aligned_cols=148 Identities=19% Similarity=0.254 Sum_probs=111.9
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHHHHHhhcccCCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQPN 81 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~Il~~L~~l~~~ 81 (375)
++|+||.|.||.. +||...+.++..+++. ..+.++||||+|++.++++.|+|. +...+...|..+.++
T Consensus 3 v~~vlD~S~SM~~-----~rl~~ak~a~~~l~~~---l~~~~~~~li~F~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (155)
T cd01466 3 LVAVLDVSGSMAG-----DKLQLVKHALRFVISS---LGDADRLSIVTFSTSAKRLSPLRRMTAKGKRSAKRVVDGLQAG 74 (155)
T ss_pred EEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCcceEEEEEecCCccccCCCcccCHHHHHHHHHHHHhccCC
Confidence 6899999999975 3999999999988865 346789999999999999998873 456788889999999
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
|++++..||+.|...++.+...+..++||+++++ ..... ....++++.+|.|++||||.. .+.+.|+.+.+..+
T Consensus 75 g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG-~~~~~----~~~~~~~~~~v~v~~igig~~-~~~~~l~~iA~~t~ 148 (155)
T cd01466 75 GGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDG-QDNHG----AVVLRADNAPIPIHTFGLGAS-HDPALLAFIAEITG 148 (155)
T ss_pred CCccHHHHHHHHHHHHhhcccCCCceEEEEEcCC-CCCcc----hhhhcccCCCceEEEEecCCC-CCHHHHHHHHhccC
Confidence 9999999999999888765433444566666544 22222 222345677999999999975 35678888877654
Q ss_pred CCCCCCeeEE
Q psy14660 162 GKDGSGSHMV 171 (375)
Q Consensus 162 ~~~~~~Sh~v 171 (375)
+ ..|||
T Consensus 149 G----~~~~~ 154 (155)
T cd01466 149 G----TFSYV 154 (155)
T ss_pred c----eEEEe
Confidence 2 35554
No 16
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.65 E-value=7.9e-15 Score=132.70 Aligned_cols=147 Identities=14% Similarity=0.169 Sum_probs=115.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhcc------CCCCCcEEEEEecCceeEEecCC---CCHHHHHHhh
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTR------SNPENNVGLLAMADSVEVLATLT---SDVGRILSKL 75 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~------~NPe~~VGLVt~ag~a~vl~pLT---~D~~~Il~~L 75 (375)
.++|+||.|.||.. ++|+.++++++.+++.+.. .+...+||||+|++.+.+.+++| .|...+.+.|
T Consensus 4 dvv~vlD~S~Sm~~-----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~~l~~~~~~~~~l~~~i 78 (186)
T cd01480 4 DITFVLDSSESVGL-----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEAGFLRDIRNYTSLKEAV 78 (186)
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeEecccccCCHHHHHHHH
Confidence 58999999999974 6788888888888888743 25568999999999999999999 7999999999
Q ss_pred cccC-CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHH
Q psy14660 76 HQVQ-PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153 (375)
Q Consensus 76 ~~l~-~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL 153 (375)
+++. .+|++.++.||..|...+........++.||+|+++... .+...+.+.++.+|+.||.|++||+|. .+...|
T Consensus 79 ~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L 156 (186)
T cd01480 79 DNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS--QNEEPL 156 (186)
T ss_pred HhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc--cchHHH
Confidence 9996 578899999999999877652222334445555444322 134567788899999999999999998 566778
Q ss_pred HHHHH
Q psy14660 154 NTFIS 158 (375)
Q Consensus 154 ~~fi~ 158 (375)
.++.+
T Consensus 157 ~~IA~ 161 (186)
T cd01480 157 SRIAC 161 (186)
T ss_pred HHHHc
Confidence 87754
No 17
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.64 E-value=2.1e-14 Score=126.98 Aligned_cols=156 Identities=16% Similarity=0.181 Sum_probs=118.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccC-CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQ-PN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~-~~ 81 (375)
.++++||.|.||.. .+|..++.++..|++.+.-.++..+||||+|++.+.+.++++ .+...++..|..+. ++
T Consensus 2 Dv~~vlD~S~Sm~~-----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~~l~~~~~~~~l~~~l~~~~~~~ 76 (164)
T cd01482 2 DIVFLVDGSWSIGR-----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEFDLNAYTSKEDVLAAIKNLPYKG 76 (164)
T ss_pred CEEEEEeCCCCcCh-----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 47999999999974 588999999999998864456789999999999999998987 68888999999886 67
Q ss_pred CCccHHHHHHHHHHHh-hccCC-CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 82 GNINFMTGIRIAHLAL-KHRQG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 82 G~~~l~~gI~vA~laL-Khr~~-k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
|+++++.||..|...+ +...+ ....+++||++.++... .++...++.||+.||.|++||+|.. +.+.|+++...
T Consensus 77 g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~--~~~~~~a~~lk~~gi~i~~ig~g~~--~~~~L~~ia~~ 152 (164)
T cd01482 77 GNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQ--DDVELPARVLRNLGVNVFAVGVKDA--DESELKMIASK 152 (164)
T ss_pred CCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCC--chHHHHHHHHHHCCCEEEEEecCcC--CHHHHHHHhCC
Confidence 8899999999877543 32111 11224444444444432 3466789999999999999999974 36778888654
Q ss_pred hCCCCCCCeeEEEec
Q psy14660 160 LNGKDGSGSHMVTVA 174 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp 174 (375)
....|+..|.
T Consensus 153 -----~~~~~~~~~~ 162 (164)
T cd01482 153 -----PSETHVFNVA 162 (164)
T ss_pred -----CchheEEEcC
Confidence 2356888775
No 18
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.62 E-value=2.3e-14 Score=130.34 Aligned_cols=164 Identities=15% Similarity=0.244 Sum_probs=117.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHHHHHhhcccC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ- 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~Il~~L~~l~- 79 (375)
.++||||.|.||. ++||+..+.++..|++..-...+..+||||+|++.+++++|++. +...++..|..+.
T Consensus 2 di~~vlD~SgSM~-----~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 76 (198)
T cd01470 2 NIYIALDASDSIG-----EEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDFNSNDADDVIKRLEDFNY 76 (198)
T ss_pred cEEEEEECCCCcc-----HHHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccCCCCCHHHHHHHHHhCCc
Confidence 4799999999996 57999999999999987644456899999999999999887763 6788999998875
Q ss_pred ----CCCCccHHHHHHHHHHHhhccC--C----CCCccEEEEEEcCCCC--CChHHHHHHHHHH----------HhCCcE
Q psy14660 80 ----PNGNINFMTGIRIAHLALKHRQ--G----KNHKMRIIAFVGSPVD--LEERELTKLAKRL----------KKEKVN 137 (375)
Q Consensus 80 ----~~G~~~l~~gI~vA~laLKhr~--~----k~~~~RIIvfvgSp~~--~d~~~l~~lakkL----------Kk~~I~ 137 (375)
..|+|++..||+.+...+.... . ...++.||||+++..+ .++......++.+ ++.+|.
T Consensus 77 ~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (198)
T cd01470 77 DDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLD 156 (198)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhccee
Confidence 3478999999998886553211 1 1234456666654332 2344444444433 566899
Q ss_pred EEEEEecCCcchHHHHHHHHHhhCCCCCCC-eeEEEecCCCch
Q psy14660 138 VDIVSFGEEVVNTELLNTFISTLNGKDGSG-SHMVTVAVGPHL 179 (375)
Q Consensus 138 VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~-Sh~v~vp~g~~L 179 (375)
|++||||.. .+.+.|+++.... .| .|+..+..-..|
T Consensus 157 i~~iGvG~~-~~~~~L~~iA~~~-----~g~~~~f~~~~~~~l 193 (198)
T cd01470 157 VYVFGVGDD-VNKEELNDLASKK-----DNERHFFKLKDYEDL 193 (198)
T ss_pred EEEEecCcc-cCHHHHHHHhcCC-----CCCceEEEeCCHHHH
Confidence 999999976 3578888886542 23 488887654334
No 19
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.61 E-value=4e-14 Score=136.43 Aligned_cols=149 Identities=16% Similarity=0.221 Sum_probs=115.6
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCC----
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP---- 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~---- 80 (375)
.++||||+|.||. .++...+.++..|+...+ .|.++||||+|++.+.++.++|.|+..+..+|..+.+
T Consensus 55 ~vvlvlD~SgSM~------~~~~~a~~a~~~~l~~~l--~~~d~v~lv~f~~~~~~~~~~t~~~~~l~~~l~~l~~~~~~ 126 (296)
T TIGR03436 55 TVGLVIDTSGSMR------NDLDRARAAAIRFLKTVL--RPNDRVFVVTFNTRLRLLQDFTSDPRLLEAALNRLKPPLRT 126 (296)
T ss_pred eEEEEEECCCCch------HHHHHHHHHHHHHHHhhC--CCCCEEEEEEeCCceeEeecCCCCHHHHHHHHHhccCCCcc
Confidence 5899999999997 368888899999987643 6899999999999999999999999999999999987
Q ss_pred -----------CCCccHHHHHHHHHH-HhhccCC-CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 81 -----------NGNINFMTGIRIAHL-ALKHRQG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 81 -----------~G~~~l~~gI~vA~l-aLKhr~~-k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.|++++..||..|.+ .++.... ...++.||+|+++..+.....+..+++.+++.+|.|++|+||...
T Consensus 127 ~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~ 206 (296)
T TIGR03436 127 DYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLR 206 (296)
T ss_pred ccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccc
Confidence 789999999987753 3332211 113444555554432234556888899999999999999998642
Q ss_pred ------------chHHHHHHHHHhhC
Q psy14660 148 ------------VNTELLNTFISTLN 161 (375)
Q Consensus 148 ------------~n~~kL~~fi~~vn 161 (375)
...+.|++|.+.++
T Consensus 207 ~~~~~~~~~~~~~~~~~L~~iA~~TG 232 (296)
T TIGR03436 207 APDLGAGAKAGLGGPEALERLAEETG 232 (296)
T ss_pred cCCcccccccCCCcHHHHHHHHHHhC
Confidence 23578999988754
No 20
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.61 E-value=2.4e-14 Score=131.18 Aligned_cols=148 Identities=19% Similarity=0.280 Sum_probs=110.9
Q ss_pred eEEEEEeCCccccC-CCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce------eEEe---cCC--------C
Q psy14660 5 STMICVDNSDFMRN-GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV------EVLA---TLT--------S 66 (375)
Q Consensus 5 aivI~lDnSesMrn-gD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a------~vl~---pLT--------~ 66 (375)
.++||||+|.||.. .+-.++||+..+.++..|+.. ..|.++|||++|++.. .+++ +++ .
T Consensus 22 ~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~---l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (206)
T cd01456 22 NVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA---LPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNGFPSA 98 (206)
T ss_pred cEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh---CCCCceEEEEEecCCCCCCccccccccccccccccCCCCcc
Confidence 58999999999984 444689999999999999885 4678999999999842 3332 343 4
Q ss_pred CHHHHHHhhcccC-CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhC-----CcEEEE
Q psy14660 67 DVGRILSKLHQVQ-PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-----KVNVDI 140 (375)
Q Consensus 67 D~~~Il~~L~~l~-~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~-----~I~Vdi 140 (375)
+...+...|..+. +.|++++..+|+.|...|. . ...++||||+++..+++. +....++.+++. +|+|++
T Consensus 99 ~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~--~~~~~iillTDG~~~~~~-~~~~~~~~~~~~~~~~~~i~i~~ 173 (206)
T cd01456 99 QRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--P--GRVNVVVLITDGEDTCGP-DPCEVARELAKRRTPAPPIKVNV 173 (206)
T ss_pred cHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--C--CCcceEEEEcCCCccCCC-CHHHHHHHHHHhcCCCCCceEEE
Confidence 7889999999998 9999999999999998775 1 122466666655333322 334455555554 999999
Q ss_pred EEecCCcchHHHHHHHHHhhC
Q psy14660 141 VSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 141 IgfG~e~~n~~kL~~fi~~vn 161 (375)
||||.. .+.+.|+.+.+..+
T Consensus 174 igiG~~-~~~~~l~~iA~~tg 193 (206)
T cd01456 174 IDFGGD-ADRAELEAIAEATG 193 (206)
T ss_pred EEecCc-ccHHHHHHHHHhcC
Confidence 999987 45688898887744
No 21
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.61 E-value=4.3e-14 Score=122.03 Aligned_cols=148 Identities=22% Similarity=0.339 Sum_probs=121.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecC--CCCHHHHHHhhcccCC--
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL--TSDVGRILSKLHQVQP-- 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pL--T~D~~~Il~~L~~l~~-- 80 (375)
.++||||+|.||. ++||.+++.++..|+..+...++..+|||++|+++.....++ +.+...+...+..+.+
T Consensus 3 ~v~l~vD~S~SM~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 77 (177)
T smart00327 3 DVVFLLDGSGSMG-----PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLFPLNDSRSKDALLEALASLSYKL 77 (177)
T ss_pred cEEEEEeCCCccc-----hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEEcccccCCHHHHHHHHHhcCCCC
Confidence 4789999999997 689999999999999999888889999999999988888888 8999999999999985
Q ss_pred CCCccHHHHHHHHHHHhhccCC---CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 81 NGNINFMTGIRIAHLALKHRQG---KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~---k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
.|.+++..+|..+...+.++.. .+.+ ++|+++++....+.......++++++++|.|++|++|... +...|..|.
T Consensus 78 ~~~~~~~~al~~~~~~~~~~~~~~~~~~~-~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i~~~~~~-~~~~l~~~~ 155 (177)
T smart00327 78 GGGTNLGAALQYALENLFSKSAGSRRGAP-KVLILITDGESNDGGDLLKAAKELKRSGVKVFVVGVGNDV-DEEELKKLA 155 (177)
T ss_pred CCCchHHHHHHHHHHHhcCcCCCCCCCCC-eEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEccCcc-CHHHHHHHh
Confidence 7889999999999988753322 1223 4444444444334357888999999999999999999763 567888776
Q ss_pred Hh
Q psy14660 158 ST 159 (375)
Q Consensus 158 ~~ 159 (375)
..
T Consensus 156 ~~ 157 (177)
T smart00327 156 SA 157 (177)
T ss_pred CC
Confidence 65
No 22
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=99.61 E-value=3.7e-14 Score=127.56 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=121.4
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhhcccC-CCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNG 82 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~~l~-~~G 82 (375)
++|+||.|.||. |.+|+.++..++.|++.+....+..+||||+|++.+.+.++|+. +...++.++..+. .+|
T Consensus 3 i~fvlD~S~S~~-----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~~~~~~~~~~~~i~~~~~~~g 77 (177)
T cd01469 3 IVFVLDGSGSIY-----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLNEYRTKEEPLSLVKHISQLLG 77 (177)
T ss_pred EEEEEeCCCCCC-----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecCccCCHHHHHHHHHhCccCCC
Confidence 789999999996 78999999999999998877677899999999999999999983 5567777887774 567
Q ss_pred CccHHHHHHHHHHHhhc-cCC-CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc---hHHHHHHHH
Q psy14660 83 NINFMTGIRIAHLALKH-RQG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV---NTELLNTFI 157 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKh-r~~-k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~---n~~kL~~fi 157 (375)
.++++.||+.|...+-. ..+ .....|+||++.+....+.......++.+|..||.|++||+|.... ..+.|..+.
T Consensus 78 ~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ia 157 (177)
T cd01469 78 LTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIA 157 (177)
T ss_pred CccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccccccccHHHHHHHh
Confidence 89999999999865521 111 1112455555555544444434667888999999999999998643 256677664
Q ss_pred HhhCCCCCCCeeEEEecCCCch
Q psy14660 158 STLNGKDGSGSHMVTVAVGPHL 179 (375)
Q Consensus 158 ~~vn~~~~~~Sh~v~vp~g~~L 179 (375)
.. ..+.|+..+..-..|
T Consensus 158 s~-----p~~~h~f~~~~~~~l 174 (177)
T cd01469 158 SK-----PPEEHFFNVTDFAAL 174 (177)
T ss_pred cC-----CcHHhEEEecCHHHh
Confidence 43 224799888654333
No 23
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.61 E-value=3.7e-14 Score=127.14 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=117.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHH---HHHhhcc
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGR---ILSKLHQ 77 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~---Il~~L~~ 77 (375)
.++|+||.|.||... +||..++.++..|++.+--.++..+||||+|++.+.++++++. +... ++..|..
T Consensus 2 Dv~~vlD~SgSm~~~----~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~ 77 (186)
T cd01471 2 DLYLLVDGSGSIGYS----NWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPNSTNKDLALNAIRALLS 77 (186)
T ss_pred cEEEEEeCCCCccch----hhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCccccchHHHHHHHHHHHh
Confidence 379999999999763 4789999999999987644556679999999999998888765 4555 3444443
Q ss_pred c-CCCCCccHHHHHHHHHHHhhcc-CC-CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHH
Q psy14660 78 V-QPNGNINFMTGIRIAHLALKHR-QG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLN 154 (375)
Q Consensus 78 l-~~~G~~~l~~gI~vA~laLKhr-~~-k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~ 154 (375)
. .++|++++..||..|...+... .. +..++.||+|+ ++...+.......+++|++.||.|.+||||.. .+.+.|.
T Consensus 78 ~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villT-DG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~-~d~~~l~ 155 (186)
T cd01471 78 LYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMT-DGIPDSKFRTLKEARKLRERGVIIAVLGVGQG-VNHEENR 155 (186)
T ss_pred CcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEc-cCCCCCCcchhHHHHHHHHCCCEEEEEEeehh-hCHHHHH
Confidence 3 4678999999999999877652 11 22334455444 44443444455788999999999999999975 4566777
Q ss_pred HHHHhhCCCCCCCeeEEEecCCCchhhHh
Q psy14660 155 TFISTLNGKDGSGSHMVTVAVGPHLSDAL 183 (375)
Q Consensus 155 ~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l 183 (375)
.|... .. +.+.|+.+..-+=..|..+|
T Consensus 156 ~ia~~-~~-~~~~~~~~~~~~~~~~~~~~ 182 (186)
T cd01471 156 SLVGC-DP-DDSPCPLYLQSSWSEVQNVI 182 (186)
T ss_pred HhcCC-CC-CCCCCCeeecCCHHHHHHHh
Confidence 66432 11 11235554444433455544
No 24
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.61 E-value=4.5e-14 Score=127.84 Aligned_cols=148 Identities=15% Similarity=0.180 Sum_probs=108.9
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC---------CHHHHHHhh
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS---------DVGRILSKL 75 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~---------D~~~Il~~L 75 (375)
.++||||.|.||.. +||+.++.++..|+.. .++.++||||+|++.+.+++|++. +...++..|
T Consensus 15 ~vv~llD~SgSM~~-----~~l~~ak~~~~~ll~~---l~~~d~v~lv~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (190)
T cd01463 15 DIVILLDVSGSMTG-----QRLHLAKQTVSSILDT---LSDNDFFNIITFSNEVNPVVPCFNDTLVQATTSNKKVLKEAL 86 (190)
T ss_pred eEEEEEECCCCCCc-----HHHHHHHHHHHHHHHh---CCCCCEEEEEEeCCCeeEEeeecccceEecCHHHHHHHHHHH
Confidence 58999999999973 6999999999999875 467889999999999888887653 567889999
Q ss_pred cccCCCCCccHHHHHHHHHHHhhcc-----C--CCCCccEEEEEEcCCCCCChHHHHHHHHHHH--hCCcEEEEEEecCC
Q psy14660 76 HQVQPNGNINFMTGIRIAHLALKHR-----Q--GKNHKMRIIAFVGSPVDLEERELTKLAKRLK--KEKVNVDIVSFGEE 146 (375)
Q Consensus 76 ~~l~~~G~~~l~~gI~vA~laLKhr-----~--~k~~~~RIIvfvgSp~~~d~~~l~~lakkLK--k~~I~VdiIgfG~e 146 (375)
..+.+.|.+++..||+.|...|+.. . .+..++.||||+++ ...+...+.....+.+ ..+|+|++||||.+
T Consensus 87 ~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG-~~~~~~~~~~~~~~~~~~~~~v~i~tigiG~~ 165 (190)
T cd01463 87 DMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDG-VPENYKEIFDKYNWDKNSEIPVRVFTYLIGRE 165 (190)
T ss_pred hhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCC-CCCcHhHHHHHhcccccCCCcEEEEEEecCCc
Confidence 9999999999999999999777641 1 11223455555544 3333333332221111 12699999999998
Q ss_pred cchHHHHHHHHHhhC
Q psy14660 147 VVNTELLNTFISTLN 161 (375)
Q Consensus 147 ~~n~~kL~~fi~~vn 161 (375)
..+...|+.+....+
T Consensus 166 ~~d~~~L~~lA~~~~ 180 (190)
T cd01463 166 VTDRREIQWMACENK 180 (190)
T ss_pred cccchHHHHHHhhcC
Confidence 656788998877643
No 25
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.60 E-value=5.7e-14 Score=129.58 Aligned_cols=146 Identities=20% Similarity=0.298 Sum_probs=105.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccC--CC----CCcEEEEEecCceeEEecCCC--CHHHHHHhhc
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRS--NP----ENNVGLLAMADSVEVLATLTS--DVGRILSKLH 76 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~--NP----e~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~ 76 (375)
.+||+||.|.||. |.||+..+..+..++..+... +| ..+||||+|++.+++.+||+. +...++.+|+
T Consensus 21 DivfvlD~S~Sm~-----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~d~~~~~~~~~ai~ 95 (193)
T cd01477 21 DIVFVVDNSKGMT-----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLNDLQSFDDLYSQIQ 95 (193)
T ss_pred eEEEEEeCCCCcc-----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecccccCHHHHHHHHH
Confidence 4899999999996 678998888888777654321 33 369999999999999999984 4567777777
Q ss_pred c----cCCCCCccHHHHHHHHHHHhhcc--CCCCCccEEEEEEcCC-CCCChHHHHHHHHHHHhCCcEEEEEEecCCcch
Q psy14660 77 Q----VQPNGNINFMTGIRIAHLALKHR--QGKNHKMRIIAFVGSP-VDLEERELTKLAKRLKKEKVNVDIVSFGEEVVN 149 (375)
Q Consensus 77 ~----l~~~G~~~l~~gI~vA~laLKhr--~~k~~~~RIIvfvgSp-~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n 149 (375)
. +...|+++++.||+.|...|+.. .......|+||++.++ .+....+....+++|++.||.|++||+|....
T Consensus 96 ~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~~d- 174 (193)
T cd01477 96 GSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQDES- 174 (193)
T ss_pred HHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCCCC-
Confidence 4 33557899999999999888632 1122235655555432 22222456788999999999999999998633
Q ss_pred HHHHHHH
Q psy14660 150 TELLNTF 156 (375)
Q Consensus 150 ~~kL~~f 156 (375)
...++++
T Consensus 175 ~~~~~~L 181 (193)
T cd01477 175 SNLLDKL 181 (193)
T ss_pred HHHHHHH
Confidence 3344444
No 26
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=99.58 E-value=1.7e-13 Score=114.57 Aligned_cols=150 Identities=22% Similarity=0.317 Sum_probs=121.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhhcccC--C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ--P 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~~l~--~ 80 (375)
.++|+||.|.|| .+++|...+.++..++..+...++..++||+.|++...++.+++. +...+...+..+. .
T Consensus 2 ~v~~viD~S~Sm-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (161)
T cd00198 2 DIVFLLDVSGSM-----GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTDKADLLEAIDALKKGL 76 (161)
T ss_pred cEEEEEeCCCCc-----CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceeecccccCCHHHHHHHHHhcccCC
Confidence 579999999999 579999999999999999887778999999999998889999887 8888888888886 6
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
+|.+++..+|..+...+.+......++.||+|.++........+....+++++++|.|++|++|. ..+...|..+....
T Consensus 77 ~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~-~~~~~~l~~l~~~~ 155 (161)
T cd00198 77 GGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD-DANEDELKEIADKT 155 (161)
T ss_pred CCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC-CCCHHHHHHHhccc
Confidence 78899999999999888765323344455555544433233368888999999999999999998 34567777776543
No 27
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.58 E-value=1.6e-13 Score=119.77 Aligned_cols=159 Identities=15% Similarity=0.228 Sum_probs=115.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--C---CHHHHHHhhcccC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--S---DVGRILSKLHQVQ 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~---D~~~Il~~L~~l~ 79 (375)
.++||||.|.||. ..||+..+.++..++.. .++.++|+|++|++.+..+.+++ . +...++..|..+.
T Consensus 4 ~v~~vlD~S~SM~-----~~~~~~~~~al~~~l~~---l~~~~~~~l~~Fs~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (171)
T cd01461 4 EVVFVIDTSGSMS-----GTKIEQTKEALLTALKD---LPPGDYFNIIGFSDTVEEFSPSSVSATAENVAAAIEYVNRLQ 75 (171)
T ss_pred eEEEEEECCCCCC-----ChhHHHHHHHHHHHHHh---CCCCCEEEEEEeCCCceeecCcceeCCHHHHHHHHHHHHhcC
Confidence 4789999999996 35799999999888864 45678999999999877665542 2 2345567777888
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++|++++..+|..|...++..+ .. .+.|||+++....+..++...++++.+.+|+|++|+||... +.+.|+.+.+.
T Consensus 76 ~~g~T~l~~al~~a~~~l~~~~--~~-~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~-~~~~l~~ia~~ 151 (171)
T cd01461 76 ALGGTNMNDALEAALELLNSSP--GS-VPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDV-NTYLLERLARE 151 (171)
T ss_pred CCCCcCHHHHHHHHHHhhccCC--CC-ccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCcc-CHHHHHHHHHc
Confidence 8999999999999988775422 23 34455554544456677888888888889999999999763 45788988776
Q ss_pred hCCCCCCCeeEEEecCCCchhh
Q psy14660 160 LNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
.+ ..|+.|.....+.+
T Consensus 152 ~g------G~~~~~~~~~~~~~ 167 (171)
T cd01461 152 GR------GIARRIYETDDIES 167 (171)
T ss_pred CC------CeEEEecChHHHHH
Confidence 32 35555555443333
No 28
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.57 E-value=1.7e-13 Score=117.09 Aligned_cols=147 Identities=18% Similarity=0.236 Sum_probs=118.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCC--HHHHHHhhcccCC-C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD--VGRILSKLHQVQP-N 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D--~~~Il~~L~~l~~-~ 81 (375)
.++|+||+|.||.. .+|...+.++..|+..+...++..++||++|++++...++++.+ ...+...|..+.. .
T Consensus 2 di~~llD~S~Sm~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 76 (161)
T cd01450 2 DIVFLLDGSESVGP-----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFSLNDYKSKDDLLKAVKNLKYLG 76 (161)
T ss_pred cEEEEEeCCCCcCH-----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEEECCCCCCHHHHHHHHHhcccCC
Confidence 37899999999984 38999999999999988878889999999999998999999887 8899999988854 3
Q ss_pred C-CccHHHHHHHHHHHhhccC--CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 82 G-NINFMTGIRIAHLALKHRQ--GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 82 G-~~~l~~gI~vA~laLKhr~--~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
| .+++..||..|...+.... .... .++||++++....+..++..+++++++++|.|++|++|. .+.+.|..|..
T Consensus 77 ~~~t~~~~al~~a~~~~~~~~~~~~~~-~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~--~~~~~l~~la~ 153 (161)
T cd01450 77 GGGTNTGKALQYALEQLFSESNARENV-PKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP--ADEEELREIAS 153 (161)
T ss_pred CCCccHHHHHHHHHHHhcccccccCCC-CeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc--cCHHHHHHHhC
Confidence 3 8999999999998776543 1234 444555544443333478899999999999999999998 45788888865
Q ss_pred h
Q psy14660 159 T 159 (375)
Q Consensus 159 ~ 159 (375)
.
T Consensus 154 ~ 154 (161)
T cd01450 154 C 154 (161)
T ss_pred C
Confidence 4
No 29
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.56 E-value=1.9e-13 Score=123.31 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=107.7
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhh---cccCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL---HQVQPN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L---~~l~~~ 81 (375)
.++|+||.|.||... .+.+ ++.++.++..+. .|..+||||+|++.+.++.|||.+...+..+| ..+.++
T Consensus 6 Dvv~llD~SgSm~~~--~~~~----~~~~~~l~~~~~--~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~l~~~~~~ 77 (185)
T cd01474 6 DLYFVLDKSGSVAAN--WIEI----YDFVEQLVDRFN--SPGLRFSFITFSTRATKILPLTDDSSAIIKGLEVLKKVTPS 77 (185)
T ss_pred eEEEEEeCcCchhhh--HHHH----HHHHHHHHHHcC--CCCcEEEEEEecCCceEEEeccccHHHHHHHHHHHhccCCC
Confidence 589999999999742 1233 355666666542 47899999999999999999999988777765 556678
Q ss_pred CCccHHHHHHHHHHHhh-c-cCCCCCccEEEEEEcCCCC--CChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 82 GNINFMTGIRIAHLALK-H-RQGKNHKMRIIAFVGSPVD--LEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 82 G~~~l~~gI~vA~laLK-h-r~~k~~~~RIIvfvgSp~~--~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
|++.+..||+.|...|. . +...... ++||++.++.. .........++.+++.||.|++||+|. .+.+.|+.+.
T Consensus 78 g~T~~~~aL~~a~~~l~~~~~~~r~~~-~~villTDG~~~~~~~~~~~~~a~~l~~~gv~i~~vgv~~--~~~~~L~~iA 154 (185)
T cd01474 78 GQTYIHEGLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNGHKYPEHEAKLSRKLGAIVYCVGVTD--FLKSQLINIA 154 (185)
T ss_pred CCCcHHHHHHHHHHHHHhhccCCCCCC-eEEEEEcCCCcCCCCCcchHHHHHHHHHcCCEEEEEeech--hhHHHHHHHh
Confidence 99999999999987653 2 2221222 44444444333 223456677889999999999999953 4567788775
Q ss_pred HhhCCCCCCCeeEEEecC
Q psy14660 158 STLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 158 ~~vn~~~~~~Sh~v~vp~ 175 (375)
.. ..|+..+..
T Consensus 155 ~~-------~~~~f~~~~ 165 (185)
T cd01474 155 DS-------KEYVFPVTS 165 (185)
T ss_pred CC-------CCeeEecCc
Confidence 32 347665543
No 30
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=99.56 E-value=2.2e-13 Score=126.83 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=119.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCC-C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQP-N 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~-~ 81 (375)
.++|+||.|.||. +++|+.++..+..|++.+.-.....+||||+|++.+.+..+|+ .+...+..+|..+.. +
T Consensus 4 DlvfllD~S~Sm~-----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~~l~~~~~~~~l~~~i~~i~~~~ 78 (224)
T cd01475 4 DLVFLIDSSRSVR-----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGRFKSKADLKRAVRRMEYLE 78 (224)
T ss_pred cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEecccccCCHHHHHHHHHhCcCCC
Confidence 5899999999996 6799999999999998765455577999999999999999998 577889999998864 5
Q ss_pred CCccHHHHHHHHHHH-hhc----cCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 82 GNINFMTGIRIAHLA-LKH----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 82 G~~~l~~gI~vA~la-LKh----r~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
|++..+.||+.|... +.. |+......|+||++.++... .++...++.+|+.||.|++||+|.. +.+.|..+
T Consensus 79 ~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~--~~~~~~a~~lk~~gv~i~~VgvG~~--~~~~L~~i 154 (224)
T cd01475 79 TGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQ--DDVSEVAAKARALGIEMFAVGVGRA--DEEELREI 154 (224)
T ss_pred CCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCc--ccHHHHHHHHHHCCcEEEEEeCCcC--CHHHHHHH
Confidence 678889999988753 332 33221124666555554332 3467788999999999999999974 46778777
Q ss_pred HHhhCCCCCCCeeEEEecCCC
Q psy14660 157 ISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 157 i~~vn~~~~~~Sh~v~vp~g~ 177 (375)
... ..+.|++.+..-.
T Consensus 155 as~-----~~~~~~f~~~~~~ 170 (224)
T cd01475 155 ASE-----PLADHVFYVEDFS 170 (224)
T ss_pred hCC-----CcHhcEEEeCCHH
Confidence 542 2246888876644
No 31
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=99.55 E-value=1.7e-13 Score=125.73 Aligned_cols=147 Identities=14% Similarity=0.256 Sum_probs=109.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHHHHHhhcccC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ- 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~Il~~L~~l~- 79 (375)
.++|+||.|.||...+|.+.+.... +.+++.+.-.....+||||.|++.+++.+|+|. |...++.+|..+.
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~----~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~~~~~~~~l~~~i~~l~~ 77 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFT----EKIINNLNISKDKVHVGILLFAEKNRDVVPFSDEERYDKNELLKKINDLKN 77 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHH----HHHHHhCccCCCccEEEEEEecCCceeEEecCcccccCHHHHHHHHHHHHh
Confidence 3799999999999888866665554 555555545566789999999999999999985 4667888887763
Q ss_pred ---CCCCccHHHHHHHHHHHhhccCCC-CCccEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHH
Q psy14660 80 ---PNGNINFMTGIRIAHLALKHRQGK-NHKMRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153 (375)
Q Consensus 80 ---~~G~~~l~~gI~vA~laLKhr~~k-~~~~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL 153 (375)
++|+|+++.||+.|...+....+. ....||+|++.++...+ ...+...++.||+.||.|++||+|... ...|
T Consensus 78 ~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~~--~~el 155 (192)
T cd01473 78 SYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAAS--ENKL 155 (192)
T ss_pred ccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecccc--HHHH
Confidence 468899999999998766432221 12245555555554433 456778899999999999999999864 4567
Q ss_pred HHHH
Q psy14660 154 NTFI 157 (375)
Q Consensus 154 ~~fi 157 (375)
..+.
T Consensus 156 ~~ia 159 (192)
T cd01473 156 KLLA 159 (192)
T ss_pred HHhc
Confidence 7664
No 32
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.53 E-value=4.7e-13 Score=141.96 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=130.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
.++||||.|.||.. +||.++|.|+..|+..- -.+.++||||+|+|. +++++|+|.+...+...|..+..+|+
T Consensus 403 ~vvfvvD~SGSM~~-----~rl~~aK~a~~~ll~~a--y~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGg 475 (584)
T PRK13406 403 TTIFVVDASGSAAL-----HRLAEAKGAVELLLAEA--YVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGG 475 (584)
T ss_pred cEEEEEECCCCCcH-----hHHHHHHHHHHHHHHhh--cCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCC
Confidence 58999999999942 69999999999998652 246899999999885 99999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC----------hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHH
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE----------ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d----------~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL 153 (375)
|.|..||..|+..++....+..+.+||+++++-.+.. ..+...++.++++.+|.+.+|++|... ...+
T Consensus 476 TpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~~--~~~~ 553 (584)
T PRK13406 476 TPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPRP--QPQA 553 (584)
T ss_pred ChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCCC--cHHH
Confidence 9999999999987765433344567777765554421 145677899999999999999999654 3567
Q ss_pred HHHHHhhCCCCCCCeeEEEecCCC--chhhHhh
Q psy14660 154 NTFISTLNGKDGSGSHMVTVAVGP--HLSDALI 184 (375)
Q Consensus 154 ~~fi~~vn~~~~~~Sh~v~vp~g~--~Lsd~l~ 184 (375)
+.+.+.++ -.|+.+|.-. .|++++-
T Consensus 554 ~~LA~~~g------g~y~~l~~~~a~~~~~~v~ 580 (584)
T PRK13406 554 RALAEAMG------ARYLPLPRADAGRLSQAVR 580 (584)
T ss_pred HHHHHhcC------CeEEECCCCCHHHHHHHHH
Confidence 87877754 4777787643 3766554
No 33
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=99.50 E-value=3.5e-13 Score=130.63 Aligned_cols=136 Identities=9% Similarity=0.157 Sum_probs=105.9
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCC----
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP---- 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~---- 80 (375)
.+|||||+|.||...|..|+||+ .+. ++...+.+.+.++|||+.|++.+++++|+|.|+.. ..++..+.+
T Consensus 62 qIvlaID~S~SM~~~~~~~~ale-ak~----lIs~al~~Le~g~vgVv~Fg~~~~~v~Plt~d~~~-~a~~~~l~~~~f~ 135 (266)
T cd01460 62 QILIAIDDSKSMSENNSKKLALE-SLC----LVSKALTLLEVGQLGVCSFGEDVQILHPFDEQFSS-QSGPRILNQFTFQ 135 (266)
T ss_pred eEEEEEecchhcccccccccHHH-HHH----HHHHHHHhCcCCcEEEEEeCCCceEeCCCCCCchh-hHHHHHhCcccCC
Confidence 48999999999999999999998 333 34444567888999999999999999999999998 666665543
Q ss_pred CCCccHHHHHHHHHHHhhccC--CCCC-ccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 81 NGNINFMTGIRIAHLALKHRQ--GKNH-KMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~--~k~~-~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.++|++..+|..|...+.... .+.. ..++||+++++.. .+++....++++++++||.|++|++=+.
T Consensus 136 ~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 136 QDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred CCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCC
Confidence 267999999999998886552 1111 1367777766543 3455555669999999999999999765
No 34
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.49 E-value=9.9e-13 Score=117.54 Aligned_cols=148 Identities=10% Similarity=0.150 Sum_probs=107.4
Q ss_pred CcceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccC---CCCCcEEEEEecCceeEEecCCCCHHHHHHhhccc
Q psy14660 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRS---NPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV 78 (375)
Q Consensus 2 ~lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~---NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l 78 (375)
.-=.++||||.|.||.. .+|...+.++..|+...... .+..+||||+|++.++++.|+|..... .+..+
T Consensus 2 ~~~~v~~llD~SgSM~~-----~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~~l~~~~~~---~~~~l 73 (176)
T cd01464 2 RRLPIYLLLDTSGSMAG-----EPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVPLTPLESF---QPPRL 73 (176)
T ss_pred CCCCEEEEEECCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEecCCccHHhc---CCCcc
Confidence 33458999999999964 47888889999998875432 256799999999999999999874422 24556
Q ss_pred CCCCCccHHHHHHHHHHHhhccCC------C-CCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHH
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQG------K-NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTE 151 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~------k-~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~ 151 (375)
..+|+|++..||..|...|..+.. + ..++.||+|+++-.+.+.....+..+.+++.++.|++||+|.. .|.+
T Consensus 74 ~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~-~~~~ 152 (176)
T cd01464 74 TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPK-ADLD 152 (176)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccc-cCHH
Confidence 788999999999999988754321 1 1223455554433223344455677778888999999999984 6788
Q ss_pred HHHHHHH
Q psy14660 152 LLNTFIS 158 (375)
Q Consensus 152 kL~~fi~ 158 (375)
.|+.+.+
T Consensus 153 ~L~~ia~ 159 (176)
T cd01464 153 TLKQITE 159 (176)
T ss_pred HHHHHHC
Confidence 8888853
No 35
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.49 E-value=8.5e-13 Score=144.55 Aligned_cols=143 Identities=15% Similarity=0.255 Sum_probs=110.9
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC-----CHHHHHHhhcccCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS-----DVGRILSKLHQVQP 80 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~-----D~~~Il~~L~~l~~ 80 (375)
++||||.|.||..+| ||...+.|+..|+... .++.++||||+|++.++++++|+. +...+...|. +.+
T Consensus 307 VVLVLDvSGSM~g~d----RL~~lkqAA~~fL~~~--l~~~DrVGLVtFsssA~vl~pLt~Its~~dr~aL~~~L~-~~A 379 (863)
T TIGR00868 307 VCLVLDKSGSMTVED----RLKRMNQAAKLFLLQT--VEKGSWVGMVTFDSAAYIKNELIQITSSAERDALTANLP-TAA 379 (863)
T ss_pred EEEEEECCccccccC----HHHHHHHHHHHHHHHh--CCCCCEEEEEEECCceeEeeccccCCcHHHHHHHHHhhc-ccc
Confidence 789999999998764 9999999999888764 467899999999999999988873 5566666664 457
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
+|+++|..||+.|...|+++..++..+.||++.++. ..+ ...+++.+++.+|+|++||||... ...|+++.+..
T Consensus 380 ~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGe-dn~---~~~~l~~lk~~gVtI~TIg~G~da--d~~L~~IA~~T 453 (863)
T TIGR00868 380 SGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGE-DNT---ISSCFEEVKQSGAIIHTIALGPSA--AKELEELSDMT 453 (863)
T ss_pred CCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCC-CCC---HHHHHHHHHHcCCEEEEEEeCCCh--HHHHHHHHHhc
Confidence 899999999999999998765444445666665432 222 235567788999999999999864 35688887764
Q ss_pred C
Q psy14660 161 N 161 (375)
Q Consensus 161 n 161 (375)
+
T Consensus 454 G 454 (863)
T TIGR00868 454 G 454 (863)
T ss_pred C
Confidence 3
No 36
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.48 E-value=6.6e-13 Score=123.09 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=112.5
Q ss_pred EEEEEeCCccccCCC-C---CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCH---------HHHH
Q psy14660 6 TMICVDNSDFMRNGD-F---LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDV---------GRIL 72 (375)
Q Consensus 6 ivI~lDnSesMrngD-~---~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~---------~~Il 72 (375)
+||+||+|.||..-+ | ..+||++.+..++.|+. +.+..+.++|| |+|.+.+++|+|.|+ ..+.
T Consensus 3 l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~-f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l~ 78 (191)
T cd01455 3 LKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDG-FEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETLK 78 (191)
T ss_pred eEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHH-HHHhCccceee---ecCcccccCccccccCcccchhHHHHHH
Confidence 799999999996433 2 25999999999888863 35678899999 567666666666555 6777
Q ss_pred HhhcccCCC--CCccHHHHHHHHHHHhh-ccCCCCCccEEEEEEcCCCC-CChHHHHHH-HHHHHhCCcEEEEEEecCCc
Q psy14660 73 SKLHQVQPN--GNINFMTGIRIAHLALK-HRQGKNHKMRIIAFVGSPVD-LEERELTKL-AKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 73 ~~L~~l~~~--G~~~l~~gI~vA~laLK-hr~~k~~~~RIIvfvgSp~~-~d~~~l~~l-akkLKk~~I~VdiIgfG~e~ 147 (375)
..|+.++++ |...- .||.+|..-|+ +.+. . .|+||++.+..+ ....++..+ ++..++.||+||+||+|...
T Consensus 79 ~~l~~~q~g~ag~~Ta-dAi~~av~rl~~~~~a--~-~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~d 154 (191)
T cd01455 79 MMHAHSQFCWSGDHTV-EATEFAIKELAAKEDF--D-EAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSLS 154 (191)
T ss_pred HHHHhcccCccCccHH-HHHHHHHHHHHhcCcC--C-CcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCCC
Confidence 777777665 44323 99999988776 5442 2 455555555443 334456664 56668999999999999864
Q ss_pred chHHHHHHHHHhhCCCCCCCeeEEEecCCC--chhhHhhhCCc
Q psy14660 148 VNTELLNTFISTLNGKDGSGSHMVTVAVGP--HLSDALISSPI 188 (375)
Q Consensus 148 ~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~--~Lsd~l~sspi 188 (375)
+ +.|+.+.+..+ |.+|..-.... .++..|++|-+
T Consensus 155 ~--~~l~~iA~~tg-----G~~F~A~d~~~L~~iy~~I~~~~~ 190 (191)
T cd01455 155 D--EADQLQRELPA-----GKAFVCMDTSELPHIMQQIFTSTL 190 (191)
T ss_pred H--HHHHHHHhCCC-----CcEEEeCCHHHHHHHHHHHHHHhc
Confidence 3 45665555422 45555544443 35666666543
No 37
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.47 E-value=3.9e-12 Score=111.19 Aligned_cols=143 Identities=16% Similarity=0.225 Sum_probs=106.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC--ceeEEecCC--CCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD--SVEVLATLT--SDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag--~a~vl~pLT--~D~~~Il~~L~~l~~ 80 (375)
.++|+||.|.||.. +|..+++++..++..+....+..+||||+|++ .+.+..+++ .++..++..|..+..
T Consensus 2 dv~~llD~S~Sm~~------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~ 75 (163)
T cd01476 2 DLLFVLDSSGSVRG------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRF 75 (163)
T ss_pred CEEEEEeCCcchhh------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCcc
Confidence 37899999999963 67788888888888766566689999999999 678888887 478889999999974
Q ss_pred -CCCccHHHHHHHHHHHhhccC--CCCCccEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEEecCCc-chHHHHHH
Q psy14660 81 -NGNINFMTGIRIAHLALKHRQ--GKNHKMRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEEV-VNTELLNT 155 (375)
Q Consensus 81 -~G~~~l~~gI~vA~laLKhr~--~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIgfG~e~-~n~~kL~~ 155 (375)
+|.+++..||..|...|.... .++.++.||||+++..+.+ ....++.|++ .+|.|++||+|... .+.+.|..
T Consensus 76 ~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~---~~~~~~~l~~~~~v~v~~vg~g~~~~~~~~~L~~ 152 (163)
T cd01476 76 IGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDD---PEKQARILRAVPNIETFAVGTGDPGTVDTEELHS 152 (163)
T ss_pred CCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCc---hHHHHHHHhhcCCCEEEEEECCCccccCHHHHHH
Confidence 677999999999998875221 1223344555544322223 4556777888 99999999999863 35666766
Q ss_pred H
Q psy14660 156 F 156 (375)
Q Consensus 156 f 156 (375)
+
T Consensus 153 i 153 (163)
T cd01476 153 I 153 (163)
T ss_pred H
Confidence 6
No 38
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.47 E-value=2.2e-12 Score=114.95 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=103.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce------eEEecCCCCH---HHHHHhh
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV------EVLATLTSDV---GRILSKL 75 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a------~vl~pLT~D~---~~Il~~L 75 (375)
+++|+||.|.||... +||+..+.++..|+..... +.+++||++|++.+ .++.+.+.+. ..+...|
T Consensus 2 ~v~~llD~SgSM~~~----~kl~~ak~a~~~l~~~l~~--~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 75 (174)
T cd01454 2 AVTLLLDLSGSMRSD----RRIDVAKKAAVLLAEALEA--CGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRL 75 (174)
T ss_pred EEEEEEECCCCCCCC----cHHHHHHHHHHHHHHHHHH--cCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHH
Confidence 589999999999853 8999999999999887544 78999999999862 3344323332 3577788
Q ss_pred cccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC----------hHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 76 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE----------ERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 76 ~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d----------~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
..+.++|.++++.||..|...|..++. . .++||++++....+ ..+..+.++.+++.||.|++||+|.
T Consensus 76 ~~~~~~g~T~~~~al~~a~~~l~~~~~--~-~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~ 152 (174)
T cd01454 76 AALSPGGNTRDGAAIRHAAERLLARPE--K-RKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDR 152 (174)
T ss_pred HccCCCCCCcHHHHHHHHHHHHhcCCC--c-CcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecC
Confidence 889999999999999999987775432 2 45555554443321 1223334888899999999999999
Q ss_pred Ccc--hHHHHHHH
Q psy14660 146 EVV--NTELLNTF 156 (375)
Q Consensus 146 e~~--n~~kL~~f 156 (375)
... +.+-+..+
T Consensus 153 ~~~~~~~~~~~~~ 165 (174)
T cd01454 153 DATTVDKEYLKNI 165 (174)
T ss_pred ccccchHHHHHHh
Confidence 763 34444433
No 39
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=99.40 E-value=1e-11 Score=108.09 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=117.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhh-ccc-CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKL-HQV-QP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L-~~l-~~ 80 (375)
.++|+||.|.||.. .+|..+++++..|+..+...++..+||||+|++.+.++.+++. +...++..+ ..+ ..
T Consensus 1 DivflvD~S~sm~~-----~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG-----DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDYQSKNDLLNAINDSIPSS 75 (178)
T ss_dssp EEEEEEE-STTSCH-----HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSHSSHHHHHHHHHTTGGCC
T ss_pred CEEEEEeCCCCCch-----HHHHHHHHHHHHHHHhhhccccccccceeeeeccccccccccccccccccccccccccccc
Confidence 37999999999987 7899999999999998778999999999999999999999986 478888888 555 56
Q ss_pred CCCccHHHHHHHHHHHhhcc---CCCCCccEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEEecCCcchHHHHHHH
Q psy14660 81 NGNINFMTGIRIAHLALKHR---QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr---~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
+|.+++..||..|..-+..+ ...+.++-||+|+++ ...+.......+.++++ .+|.+..||+ ...+.+.|..+
T Consensus 76 ~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG-~~~~~~~~~~~~~~~~~~~~i~~~~ig~--~~~~~~~l~~l 152 (178)
T PF00092_consen 76 GGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDG-NSNDSDSPSEEAANLKKSNGIKVIAIGI--DNADNEELREL 152 (178)
T ss_dssp BSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESS-SSSSHSGHHHHHHHHHHHCTEEEEEEEE--SCCHHHHHHHH
T ss_pred chhhhHHHHHhhhhhcccccccccccccccceEEEEee-cccCCcchHHHHHHHHHhcCcEEEEEec--CcCCHHHHHHH
Confidence 68899999999999877654 112343445555444 33343333344444454 5888888887 33456788877
Q ss_pred HHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 157 ISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 157 i~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
...-+ .+.|+..++.-..|++
T Consensus 153 a~~~~----~~~~~~~~~~~~~l~~ 173 (178)
T PF00092_consen 153 ASCPT----SEGHVFYLADFSDLSQ 173 (178)
T ss_dssp SHSST----CHHHEEEESSHHHHHH
T ss_pred hCCCC----CCCcEEEcCCHHHHHH
Confidence 64321 2468888766444444
No 40
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.40 E-value=1.2e-11 Score=131.44 Aligned_cols=150 Identities=16% Similarity=0.241 Sum_probs=118.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
.++||||.|.||. .+||..++.++..|+...+ .+.++||||+|++. ++++.|+|.+...+...|..+.++|+
T Consensus 409 ~v~fvvD~SGSM~-----~~rl~~aK~av~~Ll~~~~--~~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGg 481 (589)
T TIGR02031 409 LLIFVVDASGSAA-----VARMSEAKGAVELLLGEAY--VHRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGG 481 (589)
T ss_pred eEEEEEECCCCCC-----hHHHHHHHHHHHHHHHhhc--cCCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCC
Confidence 3789999999994 3699999999999987532 35689999999986 68999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC--C-------------hHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--E-------------ERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~--d-------------~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
|.|..||..|...++....+..+.+||+|+++-.+. + ..++..+++++++.||.+.||++|....
T Consensus 482 TpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~ 561 (589)
T TIGR02031 482 TPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEALALARKIREAGMPALVIDTAMRFV 561 (589)
T ss_pred CcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 999999999998776432233445666666443331 1 2456788999999999999999987644
Q ss_pred hHHHHHHHHHhhC
Q psy14660 149 NTELLNTFISTLN 161 (375)
Q Consensus 149 n~~kL~~fi~~vn 161 (375)
....++.+.++.+
T Consensus 562 ~~~~~~~lA~~~~ 574 (589)
T TIGR02031 562 STGFAQKLARKMG 574 (589)
T ss_pred cchHHHHHHHhcC
Confidence 4567888888754
No 41
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.39 E-value=2.7e-11 Score=105.17 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=98.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCcee-EEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVE-VLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~-vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
.++||||.|.||.. +|+..++.++..|+..... +.++|+||+|.+... ...+.+.+...++..|..+.++|+
T Consensus 2 ~v~illD~SgSM~~-----~k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~gg 74 (152)
T cd01462 2 PVILLVDQSGSMYG-----APEEVAKAVALALLRIALA--ENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGG 74 (152)
T ss_pred CEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCC
Confidence 47999999999973 4888888888888776543 578999999998732 234566788888899988888999
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCC-CCChHHHHHHHHHHHhCCcEEEEEEecCCcchHH
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV-DLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTE 151 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~-~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~ 151 (375)
+++..+|..+...+... ...+..||+| ++.. ......+.+.++..++.++.|++||+|.. .|..
T Consensus 75 T~l~~al~~a~~~l~~~--~~~~~~ivli-TDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~-~~~~ 139 (152)
T cd01462 75 TDINKALRYALELIERR--DPRKADIVLI-TDGYEGGVSDELLREVELKRSRVARFVALALGDH-GNPG 139 (152)
T ss_pred cCHHHHHHHHHHHHHhc--CCCCceEEEE-CCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCC-CCch
Confidence 99999999998766542 1223345544 4442 23444454556666677899999999995 4433
No 42
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=99.37 E-value=2.1e-11 Score=128.27 Aligned_cols=164 Identities=12% Similarity=0.185 Sum_probs=116.9
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCC----HHHHHHhhccc--
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQV-- 78 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D----~~~Il~~L~~l-- 78 (375)
.++|+||.|.||.. ++++..++..+..|+..+.-+.-..+||||+|++.++.+++|+.+ ...++..|..+
T Consensus 44 DIvFLLD~SgSMg~----~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~s~Dk~~aL~~I~sL~~ 119 (576)
T PTZ00441 44 DLYLLVDGSGSIGY----HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGASKDKEQALIIVKSLRK 119 (576)
T ss_pred eEEEEEeCCCccCC----ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCccccHHHHHHHHHHHHh
Confidence 48999999999963 577888889999999877555445677889999999999999754 34566666544
Q ss_pred --CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 79 --QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 79 --~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
.++|+|++..||..|...|+++.++....++||++++....+..+....+++|++.||.|++||+|.. .+.+.|+.+
T Consensus 120 ~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g-~n~e~LrlI 198 (576)
T PTZ00441 120 TYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG-INHQFNRLL 198 (576)
T ss_pred hccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC-cCHHHHHHH
Confidence 57899999999999888777653333334566666555544445566788999999999999999985 344555544
Q ss_pred HHhhCCCCCCCeeEEEecC
Q psy14660 157 ISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 157 i~~vn~~~~~~Sh~v~vp~ 175 (375)
+. -...+ ++++|+.+..
T Consensus 199 Ag-C~p~~-g~c~~Y~vad 215 (576)
T PTZ00441 199 AG-CRPRE-GKCKFYSDAD 215 (576)
T ss_pred hc-cCCCC-CCCceEEeCC
Confidence 31 11122 2466666644
No 43
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.36 E-value=3.4e-11 Score=110.09 Aligned_cols=153 Identities=12% Similarity=0.208 Sum_probs=112.8
Q ss_pred eEEEEEeCCccccCCC--CCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCCC
Q psy14660 5 STMICVDNSDFMRNGD--FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD--~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G 82 (375)
.++|+||.|.||...+ ..|+||..++.++..|+... .....+.++++.|.+.+..+.++| ...+...+..+.|.|
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~-~~~D~d~i~l~~f~~~~~~~~~~~--~~~v~~~~~~~~p~G 80 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKC-EEYDSDGITVYLFSGDFRRYDNVN--SSKVDQLFAENSPDG 80 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHH-HhcCCCCeEEEEecCCccccCCcC--HHHHHHHHhcCCCCC
Confidence 5799999999999887 57899999999999988653 344567899999998877778887 888888888888999
Q ss_pred CccHHHHHHHHHHHhhccC--C-CCCccEEEEEEcCCCCCChHH----HHHHHHHHHh-CCcEEEEEEecCCcchHHHHH
Q psy14660 83 NINFMTGIRIAHLALKHRQ--G-KNHKMRIIAFVGSPVDLEERE----LTKLAKRLKK-EKVNVDIVSFGEEVVNTELLN 154 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKhr~--~-k~~~~RIIvfvgSp~~~d~~~----l~~lakkLKk-~~I~VdiIgfG~e~~n~~kL~ 154 (375)
++++..+|+.+...+..+. + ..++.++|||+++....+... +.+.+++|++ ++|.+.+|++|......+.|+
T Consensus 81 ~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~ 160 (199)
T cd01457 81 GTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELDADNELAISFLQIGRDPAATAFLK 160 (199)
T ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhccccCceEEEEEeCCcHHHHHHHH
Confidence 9999999998864333321 1 112246666665555444433 3455555544 479999999999766667777
Q ss_pred HHHHhh
Q psy14660 155 TFISTL 160 (375)
Q Consensus 155 ~fi~~v 160 (375)
.+-+..
T Consensus 161 ~ld~~~ 166 (199)
T cd01457 161 ALDDQL 166 (199)
T ss_pred HHhHHH
Confidence 775543
No 44
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.36 E-value=4.4e-11 Score=127.97 Aligned_cols=151 Identities=17% Similarity=0.239 Sum_probs=117.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
.++|+||.|.||.. .+||..++.++..|+..-+ .+.++||||+|.+ .+++++|+|.+...+...|..+.++|+
T Consensus 467 ~vv~vvD~SgSM~~----~~rl~~ak~a~~~ll~~a~--~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~ 540 (633)
T TIGR02442 467 LVIFVVDASGSMAA----RGRMAAAKGAVLSLLRDAY--QKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGR 540 (633)
T ss_pred eEEEEEECCccCCC----ccHHHHHHHHHHHHHHHhh--cCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCC
Confidence 58899999999974 3799999999888876432 3479999999997 599999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhc--cCCCCCccEEEEEEcCCCCC-----C-hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHH
Q psy14660 84 INFMTGIRIAHLALKH--RQGKNHKMRIIAFVGSPVDL-----E-ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNT 155 (375)
Q Consensus 84 ~~l~~gI~vA~laLKh--r~~k~~~~RIIvfvgSp~~~-----d-~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~ 155 (375)
|.|..||..|...++. +..+..+..||||+++-.+. + ..+...+++++++.+|.+.+|+.+........++.
T Consensus 541 Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~ 620 (633)
T TIGR02442 541 TPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGFVRLGLAED 620 (633)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCCCcchhHHHH
Confidence 9999999999988873 22223334444444333222 1 34577789999999999999988775445678888
Q ss_pred HHHhhC
Q psy14660 156 FISTLN 161 (375)
Q Consensus 156 fi~~vn 161 (375)
+.+.++
T Consensus 621 lA~~~g 626 (633)
T TIGR02442 621 LARALG 626 (633)
T ss_pred HHHhhC
Confidence 888755
No 45
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.34 E-value=1.3e-10 Score=104.30 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=115.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCCC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN- 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~~- 81 (375)
.++|+||.|.|+. +..|+.++..+..|++.+.-.+...+||||+|++.+.+..++. .+...++.+|.++...
T Consensus 2 DivfllD~S~Si~-----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~~~~~~~~l~~~i~~i~~~~ 76 (165)
T cd01481 2 DIVFLIDGSDNVG-----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLNTHSTKADVLGAVRRLRLRG 76 (165)
T ss_pred CEEEEEeCCCCcC-----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEeccccCCHHHHHHHHHhcccCC
Confidence 4899999999996 6889999999999998875555668999999999988888886 4788899999999654
Q ss_pred C-CccHHHHHHHHHHHhhccC-C----CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHH
Q psy14660 82 G-NINFMTGIRIAHLALKHRQ-G----KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNT 155 (375)
Q Consensus 82 G-~~~l~~gI~vA~laLKhr~-~----k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~ 155 (375)
| .++.+.||+.+...+-... + ++- .|++|++.++... .++...++.||+.||.|++||.|. .+.+.|+.
T Consensus 77 g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~-~kv~vviTdG~s~--d~~~~~a~~lr~~gv~i~~vG~~~--~~~~eL~~ 151 (165)
T cd01481 77 GSQLNTGSALDYVVKNLFTKSAGSRIEEGV-PQFLVLITGGKSQ--DDVERPAVALKRAGIVPFAIGARN--ADLAELQQ 151 (165)
T ss_pred CCcccHHHHHHHHHHhhcCccccCCccCCC-CeEEEEEeCCCCc--chHHHHHHHHHHCCcEEEEEeCCc--CCHHHHHH
Confidence 4 3789999998875442221 1 122 3455555444332 357788999999999999999983 45677887
Q ss_pred HHHhhCCCCCCCeeEEEec
Q psy14660 156 FISTLNGKDGSGSHMVTVA 174 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp 174 (375)
+.. +.+|+.+|.
T Consensus 152 ias-------~p~~vf~v~ 163 (165)
T cd01481 152 IAF-------DPSFVFQVS 163 (165)
T ss_pred HhC-------CCccEEEec
Confidence 752 356877765
No 46
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.26 E-value=1.9e-10 Score=100.12 Aligned_cols=143 Identities=20% Similarity=0.306 Sum_probs=106.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecC----C-CCHHHHHHhhcccC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL----T-SDVGRILSKLHQVQ 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pL----T-~D~~~Il~~L~~l~ 79 (375)
.++|+||.|.||.- .. ..++++++.+++. ..|.+++.||+|++.+..+.|- | ......+..|..+.
T Consensus 2 ~vvilvD~S~Sm~g-----~~-~~~k~al~~~l~~---L~~~d~fnii~f~~~~~~~~~~~~~~~~~~~~~a~~~I~~~~ 72 (155)
T PF13768_consen 2 DVVILVDTSGSMSG-----EK-ELVKDALRAILRS---LPPGDRFNIIAFGSSVRPLFPGLVPATEENRQEALQWIKSLE 72 (155)
T ss_pred eEEEEEeCCCCCCC-----cH-HHHHHHHHHHHHh---CCCCCEEEEEEeCCEeeEcchhHHHHhHHHHHHHHHHHHHhc
Confidence 48999999999974 33 8899999999986 7899999999999976654432 2 34456677788888
Q ss_pred C-CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 80 P-NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 80 ~-~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
+ .|++++..+|+.|...+ ...+....||+|+++.....+..+...+++.. .+|+|+++|||.. .+...|+++..
T Consensus 73 ~~~G~t~l~~aL~~a~~~~---~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~~i~~~~~g~~-~~~~~L~~LA~ 147 (155)
T PF13768_consen 73 ANSGGTDLLAALRAALALL---QRPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHIRIFTFGIGSD-ADADFLRELAR 147 (155)
T ss_pred ccCCCccHHHHHHHHHHhc---ccCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCceEEEEEECCh-hHHHHHHHHHH
Confidence 8 89999999999888655 22234456676664432334566667776533 6799999999995 44788898887
Q ss_pred hhC
Q psy14660 159 TLN 161 (375)
Q Consensus 159 ~vn 161 (375)
..+
T Consensus 148 ~~~ 150 (155)
T PF13768_consen 148 ATG 150 (155)
T ss_pred cCC
Confidence 744
No 47
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=99.26 E-value=2.9e-10 Score=109.50 Aligned_cols=159 Identities=17% Similarity=0.226 Sum_probs=125.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
-+||+||-|.||.. ..|+.++|-++-.|++.=.+. -++|+||+|.| .++|++|||.+...+...|..+.++|.
T Consensus 80 lvvfvVDASgSM~~----~~Rm~aaKG~~~~lL~dAYq~--RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~ 153 (261)
T COG1240 80 LIVFVVDASGSMAA----RRRMAAAKGAALSLLRDAYQR--RDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGK 153 (261)
T ss_pred cEEEEEeCcccchh----HHHHHHHHHHHHHHHHHHHHc--cceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCC
Confidence 48999999999996 569999999888888765454 58999999999 599999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhccC--CCCCccEEEEEEcCCCC----CC-hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 84 INFMTGIRIAHLALKHRQ--GKNHKMRIIAFVGSPVD----LE-ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~--~k~~~~RIIvfvgSp~~----~d-~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
|-|..||+.|...+.... +...+..+||++++-.+ .+ ..+....+.++...++.+-||++........+.+.+
T Consensus 154 TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~i 233 (261)
T COG1240 154 TPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEI 233 (261)
T ss_pred CchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecCCccccccHHHHH
Confidence 999999999998776543 33355566666655433 23 467888999999999999999997765444555666
Q ss_pred HHhhCCCCCCCeeEEEecC
Q psy14660 157 ISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 157 i~~vn~~~~~~Sh~v~vp~ 175 (375)
+... |..|+.++.
T Consensus 234 A~~~------Gg~~~~L~~ 246 (261)
T COG1240 234 ARAS------GGEYYHLDD 246 (261)
T ss_pred HHHh------CCeEEeccc
Confidence 6653 345555544
No 48
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.21 E-value=6e-10 Score=118.16 Aligned_cols=143 Identities=13% Similarity=0.184 Sum_probs=104.7
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC-----CHHHHHHhhcccC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS-----DVGRILSKLHQVQ 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~-----D~~~Il~~L~~l~ 79 (375)
.++||||.|.||.. .+++.++.++..++.. .+|.++++||.|++.+.++.+.+. +...+...|..+.
T Consensus 273 ~vvfvlD~SgSM~g-----~~i~~ak~al~~~l~~---L~~~d~~~ii~F~~~~~~~~~~~~~~~~~~~~~a~~~i~~l~ 344 (596)
T TIGR03788 273 ELVFVIDTSGSMAG-----ESIEQAKSALLLALDQ---LRPGDRFNIIQFDSDVTLLFPVPVPATAHNLARARQFVAGLQ 344 (596)
T ss_pred eEEEEEECCCCCCC-----ccHHHHHHHHHHHHHh---CCCCCEEEEEEECCcceEeccccccCCHHHHHHHHHHHhhCC
Confidence 48899999999984 4688888899888764 688999999999998888766542 3455677788899
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++|++++..+|+.|...+... ......+||+|+++ ...++..+.+.++. +..+++|++||||.. .|...|+.+.+.
T Consensus 345 a~GgT~l~~aL~~a~~~~~~~-~~~~~~~iillTDG-~~~~~~~~~~~~~~-~~~~~ri~tvGiG~~-~n~~lL~~lA~~ 420 (596)
T TIGR03788 345 ADGGTEMAGALSAALRDDGPE-SSGALRQVVFLTDG-AVGNEDALFQLIRT-KLGDSRLFTVGIGSA-PNSYFMRKAAQF 420 (596)
T ss_pred CCCCccHHHHHHHHHHhhccc-CCCceeEEEEEeCC-CCCCHHHHHHHHHH-hcCCceEEEEEeCCC-cCHHHHHHHHHc
Confidence 999999999999888643222 11222345555544 33456666665543 345799999999986 467888888776
No 49
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=98.73 E-value=2.5e-07 Score=85.79 Aligned_cols=139 Identities=20% Similarity=0.334 Sum_probs=92.1
Q ss_pred eEEEEEeCCccccCCCCCC-CHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-------------ceeEEecCCCCHHH
Q psy14660 5 STMICVDNSDFMRNGDFLP-TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-------------SVEVLATLTSDVGR 70 (375)
Q Consensus 5 aivI~lDnSesMrngD~~P-sRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-------------~a~vl~pLT~D~~~ 70 (375)
+|++|||+|.+|-...-.. .+|..+.+++..++..|.-.+|.+.||||.|+- +.+++.+++.=.-.
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~ 80 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAE 80 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHH
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHH
Confidence 6899999999998433221 289999999999999999999999999999983 13567777754344
Q ss_pred HHHhhccc-CC----------CCCccHHHHHHHHHHHhhc--cCCCCCccEEEEEEcCCCCC-ChHHHHHH-----HHHH
Q psy14660 71 ILSKLHQV-QP----------NGNINFMTGIRIAHLALKH--RQGKNHKMRIIAFVGSPVDL-EERELTKL-----AKRL 131 (375)
Q Consensus 71 Il~~L~~l-~~----------~G~~~l~~gI~vA~laLKh--r~~k~~~~RIIvfvgSp~~~-d~~~l~~l-----akkL 131 (375)
.+..|..+ .+ ....++..+|-+|...|+. ...+..++||++|+...... +..++..+ ++-+
T Consensus 81 ~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~~~~~l~~~Dl 160 (224)
T PF03731_consen 81 RLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELERIIQKLKAKDL 160 (224)
T ss_dssp HHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHHHHHhhccccc
Confidence 44444433 33 3567999999999999986 33445568888888433322 33344444 4559
Q ss_pred HhCCcEEEEEEe
Q psy14660 132 KKEKVNVDIVSF 143 (375)
Q Consensus 132 Kk~~I~VdiIgf 143 (375)
...+|.+.++.+
T Consensus 161 ~~~~i~~~~~~l 172 (224)
T PF03731_consen 161 QDNGIEIELFFL 172 (224)
T ss_dssp HHHTEEEEEEEC
T ss_pred hhcCcceeEeec
Confidence 999999999999
No 50
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=98.65 E-value=6.9e-07 Score=95.34 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=105.6
Q ss_pred cceEEEEEeCCccccCCCC---CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC----------ceeEEecCCCCHH
Q psy14660 3 LESTMICVDNSDFMRNGDF---LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD----------SVEVLATLTSDVG 69 (375)
Q Consensus 3 lEaivI~lDnSesMrngD~---~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag----------~a~vl~pLT~D~~ 69 (375)
-|++++|||+|.+|....- ..++|..+..++..|++.|.=.+|.+.||||.|+- +.+|+.+|..=-.
T Consensus 10 keailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a 89 (584)
T TIGR00578 10 RDSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 89 (584)
T ss_pred eeEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCH
Confidence 3899999999999996311 25899999999999999999999999999999984 3466777775444
Q ss_pred HHHHhhcccCCC------------CC-ccHHHHHHHHHHHhhccCCCCCccEEEEEEcC--CCCCC--h-HHHHHHHHHH
Q psy14660 70 RILSKLHQVQPN------------GN-INFMTGIRIAHLALKHRQGKNHKMRIIAFVGS--PVDLE--E-RELTKLAKRL 131 (375)
Q Consensus 70 ~Il~~L~~l~~~------------G~-~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgS--p~~~d--~-~~l~~lakkL 131 (375)
..+..|..+..+ +. .+|.++|-+|...|.....+...+||++|+.- |...+ . ......|+.|
T Consensus 90 ~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~~~~~~~a~~~a~dl 169 (584)
T TIGR00578 90 KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDL 169 (584)
T ss_pred HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCchhHHHHHHHHHHHH
Confidence 444555444221 22 37899999999988764444556899999844 33322 1 2235579999
Q ss_pred HhCCcEEEEEEecC
Q psy14660 132 KKEKVNVDIVSFGE 145 (375)
Q Consensus 132 Kk~~I~VdiIgfG~ 145 (375)
+..||.|.++.+..
T Consensus 170 ~~~gi~ielf~l~~ 183 (584)
T TIGR00578 170 RDTGIFLDLMHLKK 183 (584)
T ss_pred HhcCeEEEEEecCC
Confidence 99999999986643
No 51
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=98.49 E-value=6.7e-06 Score=77.14 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=118.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC-CHHHHHHhhcc----cC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS-DVGRILSKLHQ----VQ 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~-D~~~Il~~L~~----l~ 79 (375)
.+.+|||.|.||+ +=|+--+.++..+=+--+. .+..+..+|=+..|+.+..-+-++|. |+......+|. +.
T Consensus 3 rV~LVLD~SGSM~-~~yk~G~vQ~~~Er~lalA---~~~DdDG~i~v~~Fs~~~~~~~~vt~~~~~~~v~~~~~~~~~~~ 78 (200)
T PF10138_consen 3 RVYLVLDISGSMR-PLYKDGTVQRVVERILALA---AQFDDDGEIDVWFFSTEFDRLPDVTLDNYEGYVDELHAGLPDWG 78 (200)
T ss_pred EEEEEEeCCCCCc-hhhhCccHHHHHHHHHHHH---hhcCCCCceEEEEeCCCCCcCCCcCHHHHHHHHHHHhccccccC
Confidence 4789999999998 3455556654433332233 24567789999999998777777774 44444445442 24
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
+-|+++...+|+.+..-...+... ..--.|+|+.++...+...+.++.....+..|-...||||... ...|+++=+
T Consensus 79 ~~G~t~y~~vm~~v~~~y~~~~~~-~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pifwqFVgiG~~~--f~fL~kLD~- 154 (200)
T PF10138_consen 79 RMGGTNYAPVMEDVLDHYFKREPS-DAPALVLFITDGGPDDRRAIEKLIREASDEPIFWQFVGIGDSN--FGFLEKLDD- 154 (200)
T ss_pred CCCCcchHHHHHHHHHHHhhcCCC-CCCeEEEEEecCCccchHHHHHHHHhccCCCeeEEEEEecCCc--chHHHHhhc-
Confidence 458899999999877533322222 2246888887776678888999999999999999999999987 466666633
Q ss_pred hCCCCCCCeeEEEecCCCc-----hhhHhh
Q psy14660 160 LNGKDGSGSHMVTVAVGPH-----LSDALI 184 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~g~~-----Lsd~l~ 184 (375)
+.+.--+|.+|+++.+-+. |+|.|+
T Consensus 155 l~gR~vDNa~Ff~~~d~~~lsD~eLy~~LL 184 (200)
T PF10138_consen 155 LAGRVVDNAGFFAIDDIDELSDEELYDRLL 184 (200)
T ss_pred cCCcccCCcCeEecCCcccCCHHHHHHHHH
Confidence 3333224788999887543 666665
No 52
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.49 E-value=9e-06 Score=79.78 Aligned_cols=174 Identities=14% Similarity=0.160 Sum_probs=116.8
Q ss_pred EEEEEeCCcccc---CCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCC---------CH----
Q psy14660 6 TMICVDNSDFMR---NGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTS---------DV---- 68 (375)
Q Consensus 6 ivI~lDnSesMr---ngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~---------D~---- 68 (375)
.+|+||.+..-- +.+=.+.-|....+++-.|+++++-.|..|+|.||+.... +..|-|-+. +.
T Consensus 5 L~vvlD~np~~W~~~~~~~~~~~l~~~l~sllvF~NahL~l~~~N~vaVIAs~~~~~~~LYps~~~~~~~~~~~~~~~~~ 84 (279)
T TIGR00627 5 LVVIIEANPCSWGMLALAHGKRTISKVLRAIVVFLNAHLAFNANNKLAVIASHSQDNKYLYPSTRCEDRNASELDPKRLR 84 (279)
T ss_pred EEEEEeCCHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHhcCccCCEEEEEecCCcceEEecCCcccccccccccccccc
Confidence 578999986542 2221255677888999999999999999999999999763 555544321 11
Q ss_pred -----------HHHHHhhccc----CCC----CCccHHHHHHHHHHHhhcc----C-CCCCccEEEEEEcCCCCC-ChHH
Q psy14660 69 -----------GRILSKLHQV----QPN----GNINFMTGIRIAHLALKHR----Q-GKNHKMRIIAFVGSPVDL-EERE 123 (375)
Q Consensus 69 -----------~~Il~~L~~l----~~~----G~~~l~~gI~vA~laLKhr----~-~k~~~~RIIvfvgSp~~~-d~~~ 123 (375)
..++..|..+ ... +.+.|..||.+|.--...+ + ..+-+.||+||.+|+... .-..
T Consensus 85 ~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~~~~~qYi~ 164 (279)
T TIGR00627 85 ELLYRDFRTVDETIVEEIKPLMAHADKHMKKDSRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITPDMALQYIP 164 (279)
T ss_pred chhccchhHHHHHHHHHHHHHHhhchhcccccccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCCCchHHHHH
Confidence 1234444322 111 4566788888777433221 1 124578999999987532 2345
Q ss_pred HHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhhhC
Q psy14660 124 LTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALISS 186 (375)
Q Consensus 124 l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ss 186 (375)
+...+..++|.||+|||++++.+ .....|++..+.+|| -|..++...+|.+.|+..
T Consensus 165 ~mn~Ifaaqk~~I~Idv~~L~~e-~~~~~lqQa~~~TgG------~Y~~~~~~~~L~q~L~~~ 220 (279)
T TIGR00627 165 LMNCIFSAQKQNIPIDVVSIGGD-FTSGFLQQAADITGG------SYLHVKKPQGLLQYLMTN 220 (279)
T ss_pred HHHHHHHHHHcCceEEEEEeCCc-cccHHHHHHHHHhCC------EEeccCCHhHHHHHHHHh
Confidence 66889999999999999999876 234788988888762 444455555688888753
No 53
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.44 E-value=9e-06 Score=85.21 Aligned_cols=149 Identities=15% Similarity=0.204 Sum_probs=98.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE-ecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL-ATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl-~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
.++||||.|.||. | + |. .+++.++-.++. .-....+++|||.|++...-. .+.......++..|... .+|+
T Consensus 325 piII~VDtSGSM~-G-~-ke--~~AkalAaAL~~--iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GG 396 (487)
T PRK10997 325 PFIVCVDTSGSMG-G-F-NE--QCAKAFCLALMR--IALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGG 396 (487)
T ss_pred cEEEEEECCCCCC-C-C-HH--HHHHHHHHHHHH--HHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCC
Confidence 4799999999996 2 2 33 334432222222 124557899999999864332 34445677788888655 5789
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC-ChHHHHHHHHHHHh-CCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL-EERELTKLAKRLKK-EKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~-d~~~l~~lakkLKk-~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
|++..+|..+...++.+. .++-.||++++-... -+.++.+..+.|++ .+.+++.|.+|.. .|...++-| +
T Consensus 397 TDl~~aL~~al~~l~~~~---~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~-~~p~l~~if-D--- 468 (487)
T PRK10997 397 TDLAPCLRAIIEKMQGRE---WFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAH-GKPGIMRIF-D--- 468 (487)
T ss_pred CcHHHHHHHHHHHHcccc---cCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCC-CCchHHHhc-C---
Confidence 999999998887665422 234455566554432 26778888999988 8999999999964 344455433 2
Q ss_pred CCCCCCeeEEEecCC
Q psy14660 162 GKDGSGSHMVTVAVG 176 (375)
Q Consensus 162 ~~~~~~Sh~v~vp~g 176 (375)
|+....||
T Consensus 469 -------~~W~~d~~ 476 (487)
T PRK10997 469 -------HIWRFDTG 476 (487)
T ss_pred -------eeeEecCC
Confidence 66666665
No 54
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=98.39 E-value=7.8e-06 Score=76.09 Aligned_cols=146 Identities=12% Similarity=0.193 Sum_probs=95.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCC----CcEEEEEecCceeEEecCCCCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPE----NNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe----~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~ 80 (375)
-|+++||+|.||+- .|+++....+..+++.. .++|. ..++||||+|.+.+.+|+|.=. .+ ....|..
T Consensus 5 P~~lllDtSgSM~G-----e~IealN~Glq~m~~~L-kqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~-nF--~~p~L~a 75 (207)
T COG4245 5 PCYLLLDTSGSMIG-----EPIEALNAGLQMMIDTL-KQDPYALERVELSIVTFGGPARVIQPFTDAA-NF--NPPILTA 75 (207)
T ss_pred CEEEEEecCccccc-----ccHHHHHHHHHHHHHHH-HhChhhhheeEEEEEEecCcceEEechhhHh-hc--CCCceec
Confidence 58999999999996 89999999999999875 56664 4789999999999999997411 11 1233455
Q ss_pred CCCccHHHHHHHHHHHhhccC-----C-CCCccEEEEEEcCCCCCChHHHHHHHHHH--HhCCcEEEEEEecCCcchHHH
Q psy14660 81 NGNINFMTGIRIAHLALKHRQ-----G-KNHKMRIIAFVGSPVDLEERELTKLAKRL--KKEKVNVDIVSFGEEVVNTEL 152 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~-----~-k~~~~RIIvfvgSp~~~d~~~l~~lakkL--Kk~~I~VdiIgfG~e~~n~~k 152 (375)
.|++.++.||+.|......+. + +..=+-.|+++.+....| +--..++... ...+.+|-..+||....+.+.
T Consensus 76 ~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD-~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~ 154 (207)
T COG4245 76 QGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD-DWQAGAALVFQGERRAKSVAAFSVGVQGADNKT 154 (207)
T ss_pred CCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch-HHHhHHHHhhhcccccceEEEEEecccccccHH
Confidence 699999999999997765541 1 111133444443322212 1111222222 223356667777777556677
Q ss_pred HHHHHHhh
Q psy14660 153 LNTFISTL 160 (375)
Q Consensus 153 L~~fi~~v 160 (375)
|.++-+.|
T Consensus 155 L~qit~~V 162 (207)
T COG4245 155 LNQITEKV 162 (207)
T ss_pred HHHHHHhh
Confidence 87776544
No 55
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=98.35 E-value=9.8e-06 Score=77.43 Aligned_cols=148 Identities=20% Similarity=0.229 Sum_probs=98.9
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE------------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------ 60 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v------------------------ 60 (375)
..++|||+|..-.+.- =++..++++...+...-..+|..+||||+|.....+
T Consensus 5 ~~~FvIDvs~~a~~~g----~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P 80 (244)
T cd01479 5 VYVFLIDVSYNAIKSG----LLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLP 80 (244)
T ss_pred EEEEEEEccHHHHhhC----hHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCC
Confidence 5789999997664311 145777777777765322237789999999864322
Q ss_pred -----EecCCCCHHHHHHhhcccC------CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh--------
Q psy14660 61 -----LATLTSDVGRILSKLHQVQ------PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE-------- 121 (375)
Q Consensus 61 -----l~pLT~D~~~Il~~L~~l~------~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~-------- 121 (375)
++++......|...|+.|. ......++.||++|..+|+++- .|||+|++++-+..+
T Consensus 81 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~G-----GkIi~f~s~~pt~GpG~l~~~~~ 155 (244)
T cd01479 81 LPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETG-----GKIIVFQSSLPTLGAGKLKSRED 155 (244)
T ss_pred CCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcC-----CEEEEEeCCCCCcCCcccccCcc
Confidence 1122223345555666552 1245789999999999999643 699999988643111
Q ss_pred -----------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 122 -----------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 122 -----------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+-..++|.++.+++|.||+..++...-...-|..++..++
T Consensus 156 ~~~~~~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TG 212 (244)
T cd01479 156 PKLLSTDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTG 212 (244)
T ss_pred ccccCchhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcC
Confidence 1233689999999999999988876555566777766544
No 56
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=98.29 E-value=2.8e-05 Score=73.62 Aligned_cols=149 Identities=22% Similarity=0.235 Sum_probs=103.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE--e-------------------c
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL--A-------------------T 63 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl--~-------------------p 63 (375)
+.+++||.|....+ ..-++..++++...+... ..++..+||||||.+...+. . |
T Consensus 5 ~~vFvID~s~~ai~----~~~l~~~~~sl~~~l~~l-p~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p 79 (239)
T cd01468 5 VFVFVIDVSYEAIK----EGLLQALKESLLASLDLL-PGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLP 79 (239)
T ss_pred EEEEEEEcchHhcc----ccHHHHHHHHHHHHHHhC-CCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCC
Confidence 57899999987654 344678888888888653 22478899999998643321 1 1
Q ss_pred CCC--------CHHHHHHhhcccCCC--------CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh------
Q psy14660 64 LTS--------DVGRILSKLHQVQPN--------GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE------ 121 (375)
Q Consensus 64 LT~--------D~~~Il~~L~~l~~~--------G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~------ 121 (375)
+.. ....|...|+.|.+. ....++.||++|...|+++- ...||++|++++-+..+
T Consensus 80 ~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~---~gGkI~~f~sg~pt~GpG~l~~~ 156 (239)
T cd01468 80 LPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTF---AGGRIIVFQGGLPTVGPGKLKSR 156 (239)
T ss_pred CcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcC---CCceEEEEECCCCCCCCCccccC
Confidence 111 124555566655321 34789999999999998862 23799999988765111
Q ss_pred -------------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 122 -------------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 122 -------------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+-..+++.++.+++|.||+..++.+.-....|..++..++
T Consensus 157 ~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TG 215 (239)
T cd01468 157 EDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTG 215 (239)
T ss_pred cccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCC
Confidence 2335689999999999999999987656677777776644
No 57
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=98.28 E-value=2.7e-05 Score=73.60 Aligned_cols=148 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE------------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------ 60 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v------------------------ 60 (375)
+.++|||.|....+ -..++..++++...++.. ..++..+||||+|.....+
T Consensus 5 ~y~FvID~s~~av~----~g~~~~~~~sl~~~l~~l-~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p 79 (243)
T PF04811_consen 5 VYVFVIDVSYEAVQ----SGLLQSLIESLKSALDSL-PGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIP 79 (243)
T ss_dssp EEEEEEE-SHHHHH----HTHHHHHHHHHHHHGCTS-STSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSS
T ss_pred EEEEEEECchhhhh----ccHHHHHHHHHHHHHHhc-cCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccC
Confidence 56899999976443 357788899998888653 2558999999999864332
Q ss_pred -----EecCCCCHHHHHHhhcccC--------CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh------
Q psy14660 61 -----LATLTSDVGRILSKLHQVQ--------PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE------ 121 (375)
Q Consensus 61 -----l~pLT~D~~~Il~~L~~l~--------~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~------ 121 (375)
++++......|...|+.|. ......++.||++|...|+.+. ...||++|++++-+..+
T Consensus 80 ~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~---~gGkI~~F~s~~pt~G~Gg~l~~ 156 (243)
T PF04811_consen 80 LPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRN---TGGKILVFTSGPPTYGPGGSLKK 156 (243)
T ss_dssp TSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHT---S-EEEEEEESS---SSSTTSS-S
T ss_pred CcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccc---cCCEEEEEeccCCCCCCCceecc
Confidence 2333444566666666552 1245789999999999998433 23799999988653211
Q ss_pred ---------------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 122 ---------------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 122 ---------------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
+-..++++++.+.+|.||+..++.......-|..++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~T 216 (243)
T PF04811_consen 157 REDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYT 216 (243)
T ss_dssp BTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCT
T ss_pred cccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhC
Confidence 135689999999999999999998876777788887764
No 58
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=98.14 E-value=0.00011 Score=71.51 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=98.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE--Ee--------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV--LA-------------------- 62 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v--l~-------------------- 62 (375)
..++|||.|..- ..+++.++++...+.. ..+..+||||||.....+ |.
T Consensus 5 ~~vFviDvs~~~-------~el~~l~~sl~~~L~~---lP~~a~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~ 74 (267)
T cd01478 5 VFLFVVDTCMDE-------EELDALKESLIMSLSL---LPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQ 74 (267)
T ss_pred EEEEEEECccCH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHH
Confidence 468999999742 2477888887777754 455679999999975433 22
Q ss_pred ------------------------------------cCCCCHHHHHHhhcccCCC---------CCccHHHHHHHHHHHh
Q psy14660 63 ------------------------------------TLTSDVGRILSKLHQVQPN---------GNINFMTGIRIAHLAL 97 (375)
Q Consensus 63 ------------------------------------pLT~D~~~Il~~L~~l~~~---------G~~~l~~gI~vA~laL 97 (375)
|+......|...|+.|.+. ....++.||++|..+|
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll 154 (267)
T cd01478 75 IQDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLL 154 (267)
T ss_pred HHHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHH
Confidence 1111123444555666331 3578999999999999
Q ss_pred hccCCCCCccEEEEEEcCCCCCCh------------------------------HHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 98 KHRQGKNHKMRIIAFVGSPVDLEE------------------------------RELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 98 Khr~~k~~~~RIIvfvgSp~~~d~------------------------------~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
+..- ++...||++|++++-+..+ +--.++|.++.+++|.||+..++...
T Consensus 155 ~~~~-~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~ 233 (267)
T cd01478 155 EACF-PNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQ 233 (267)
T ss_pred Hhhc-CCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccc
Confidence 8542 2345899999988764111 11224788889999999999999876
Q ss_pred chHHHHHHHHHhh
Q psy14660 148 VNTELLNTFISTL 160 (375)
Q Consensus 148 ~n~~kL~~fi~~v 160 (375)
-...-|..+++.+
T Consensus 234 vglaem~~l~~~T 246 (267)
T cd01478 234 VGLLEMKVLVNST 246 (267)
T ss_pred cCHHHHHHHHHhc
Confidence 5667777777653
No 59
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=97.99 E-value=0.00062 Score=66.82 Aligned_cols=171 Identities=19% Similarity=0.209 Sum_probs=113.1
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCC--------C---------
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTS--------D--------- 67 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~--------D--------- 67 (375)
.+|+||.+..--..=-.+..|....+++-.|+++++-.|..|+|.||+...+ ++.|-|... +
T Consensus 4 LvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~~~ 83 (276)
T PF03850_consen 4 LVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSDSN 83 (276)
T ss_pred EEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccccc
Confidence 6899999864322111226788888999999999999999999999998874 666665544 0
Q ss_pred --------HHHHHHhhccc----CCC----CCccHHHHHHHHHHHhhcc----C--CCCCccEEEE-EEcCCCCCC-hHH
Q psy14660 68 --------VGRILSKLHQV----QPN----GNINFMTGIRIAHLALKHR----Q--GKNHKMRIIA-FVGSPVDLE-ERE 123 (375)
Q Consensus 68 --------~~~Il~~L~~l----~~~----G~~~l~~gI~vA~laLKhr----~--~k~~~~RIIv-fvgSp~~~d-~~~ 123 (375)
-..|.+.|+.+ ... ..+.|..||.+|.--...+ + +..-+.||+| +.+|+.... -..
T Consensus 84 ~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s~d~~~QYi~ 163 (276)
T PF03850_consen 84 KYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGSPDSSSQYIP 163 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecCCCccHHHHH
Confidence 12334444433 111 1267788888776333222 1 1356689999 566654321 234
Q ss_pred HHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 124 LTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 124 l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
+...+-...|.+|.||++.+|. .....|++-.+.+|| -|+.++....|.-.|+
T Consensus 164 ~MN~iFaAqk~~v~IDv~~L~~--~~s~fLqQa~d~T~G------~y~~~~~~~~l~q~L~ 216 (276)
T PF03850_consen 164 LMNCIFAAQKQKVPIDVCKLGG--KDSTFLQQASDITGG------IYLKVSKPEGLLQYLL 216 (276)
T ss_pred HHHHHHHHhcCCceeEEEEecC--CchHHHHHHHHHhCc------eeeccCccccHHHHHH
Confidence 5566777899999999999998 346899999888663 4555555444656665
No 60
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.98 E-value=0.00014 Score=75.51 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=95.1
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-ee-EEecCCCCHHHHHHhhcccCCCCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VE-VLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~-vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
+++|||-|.||.- ++-++++..+-.++..-...| =++.++.|... .+ -+.++..|..+++..|..+..+|
T Consensus 275 villlD~SGSM~G-----~~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~~~f~GG- 346 (437)
T COG2425 275 VILLLDKSGSMSG-----FKEQWAKAVALALMRIALAEN--RDCYVILFDSEVIEYELYEKKIDIEELIEFLSYVFGGG- 346 (437)
T ss_pred EEEEEeCCCCcCC-----cHHHHHHHHHHHHHHHHHHhc--cceEEEEecccceeeeecCCccCHHHHHHHHhhhcCCC-
Confidence 7999999999985 667766654444444322322 36999999984 22 27788889999999999998877
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHH-HHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERE-LTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~-l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
|+|..+|..|...+|.+.-.+ ..||+++++--.-. .+ +.+..+..+..+.+|+.|.+|+..
T Consensus 347 TD~~~~l~~al~~~k~~~~~~--adiv~ITDg~~~~~-~~~~~~v~e~~k~~~~rl~aV~I~~~~ 408 (437)
T COG2425 347 TDITKALRSALEDLKSRELFK--ADIVVITDGEDERL-DDFLRKVKELKKRRNARLHAVLIGGYG 408 (437)
T ss_pred CChHHHHHHHHHHhhcccccC--CCEEEEeccHhhhh-hHHHHHHHHHHHHhhceEEEEEecCCC
Confidence 999999999999999776544 57777664321112 23 444455555889999999999864
No 61
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=97.81 E-value=0.00042 Score=65.27 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=82.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhhccc--CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQV--QP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~~l--~~ 80 (375)
-++||+|+|.||.. | +++ +-.|+.......+ ++.++.|......++++-. |....+..+... .-
T Consensus 59 ~lvvl~DvSGSM~~--~--s~~------~l~~~~~l~~~~~--~~~~f~F~~~l~~vT~~l~~~~~~~~l~~~~~~~~~~ 126 (222)
T PF05762_consen 59 RLVVLCDVSGSMAG--Y--SEF------MLAFLYALQRQFR--RVRVFVFSTRLTEVTPLLRRRDPEEALARLSALVQSF 126 (222)
T ss_pred cEEEEEeCCCChHH--H--HHH------HHHHHHHHHHhCC--CEEEEEEeeehhhhhhhhccCCHHHHHHHHHhhccCC
Confidence 48999999999973 2 222 2234444444544 8999999986554554433 666666666522 36
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCC-CCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSP-VDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp-~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
+|+|+++.+|..+...+.. ..- ++..||++++. -+.+...+....++|+..+.+|..++=
T Consensus 127 ~GgTdi~~aL~~~~~~~~~--~~~-~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~~rviwLnP 187 (222)
T PF05762_consen 127 GGGTDIGQALREFLRQYAR--PDL-RRTTVVIISDGWDTNDPEPLAEELRRLRRRGRRVIWLNP 187 (222)
T ss_pred CCccHHHHHHHHHHHHhhc--ccc-cCcEEEEEecccccCChHHHHHHHHHHHHhCCEEEEECC
Confidence 7999999999988864431 112 34556666665 345677888889999999998877764
No 62
>PLN00162 transport protein sec23; Provisional
Probab=97.63 E-value=0.00075 Score=74.47 Aligned_cols=144 Identities=21% Similarity=0.188 Sum_probs=94.6
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE--Eec-------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV--LAT------------------- 63 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v--l~p------------------- 63 (375)
..++|||.|-.- ..++..++++...+.. ..+..+||||||+....+ |..
T Consensus 126 ~fvFvID~s~~~-------~~l~~lk~sl~~~L~~---LP~~a~VGlITF~s~V~~~~L~~~~~~~~~Vf~g~k~~t~~~ 195 (761)
T PLN00162 126 VFVFVVDTCMIE-------EELGALKSALLQAIAL---LPENALVGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQ 195 (761)
T ss_pred EEEEEEecchhH-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCEEEEEEcCCCCCcceEEecCCccCCHHH
Confidence 578999999432 3477777777776654 456789999999975433 211
Q ss_pred -------------------------------------CCCCHHHHHHhhcccCC------CC---CccHHHHHHHHHHHh
Q psy14660 64 -------------------------------------LTSDVGRILSKLHQVQP------NG---NINFMTGIRIAHLAL 97 (375)
Q Consensus 64 -------------------------------------LT~D~~~Il~~L~~l~~------~G---~~~l~~gI~vA~laL 97 (375)
+..-...|...|+.|.+ .| ...++.||++|..+|
T Consensus 196 l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~vA~~lL 275 (761)
T PLN00162 196 ILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLL 275 (761)
T ss_pred HHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHHHHHHHH
Confidence 00001223333444421 12 467899999999999
Q ss_pred hccCCCCCccEEEEEEcCCCCCCh------------------------------HHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 98 KHRQGKNHKMRIIAFVGSPVDLEE------------------------------RELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 98 Khr~~k~~~~RIIvfvgSp~~~d~------------------------------~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
+..- ++...||++|+++|-+..+ +--.++|+++.+++|.||+..++...
T Consensus 276 ~~~~-~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dq 354 (761)
T PLN00162 276 GACV-PGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQ 354 (761)
T ss_pred hhcc-CCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccc
Confidence 7542 2456899999998853111 12235899999999999999998876
Q ss_pred chHHHHHHHHHh
Q psy14660 148 VNTELLNTFIST 159 (375)
Q Consensus 148 ~n~~kL~~fi~~ 159 (375)
-...-|..+++.
T Consensus 355 vglaem~~l~~~ 366 (761)
T PLN00162 355 VGVAEMKVAVER 366 (761)
T ss_pred cCHHHHhhhHhh
Confidence 555666666665
No 63
>PTZ00395 Sec24-related protein; Provisional
Probab=97.13 E-value=0.0042 Score=71.53 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=89.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce--e-----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV--E----------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a--~----------------------- 59 (375)
..+||||+|......-+ +.+..++++..+... ..|..+||||+|-... +
T Consensus 954 ~YvFLIDVS~~AVkSGL----l~tacesIK~sLDsL--~dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQ 1027 (1560)
T PTZ00395 954 YFVFVVECSYNAIYNNI----TYTILEGIRYAVQNV--KCPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQ 1027 (1560)
T ss_pred EEEEEEECCHHHHhhCh----HHHHHHHHHHHHhcC--CCCCcEEEEEEecCcEEEEecCcccccccccccccccCCCce
Confidence 68999999988765333 235566666666553 2577899999997521 1
Q ss_pred ------------------EEecCCCCHHHHHHhhccc------CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcC
Q psy14660 60 ------------------VLATLTSDVGRILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS 115 (375)
Q Consensus 60 ------------------vl~pLT~D~~~Il~~L~~l------~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgS 115 (375)
+++.|......|...|+.| ....+..|+.||+.|..+|+++.. ..||++|.++
T Consensus 1028 MLVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GG---GGKIiVF~SS 1104 (1560)
T PTZ00395 1028 VIVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNG---LGSICMFYTT 1104 (1560)
T ss_pred EEeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCC---CceEEEEEcC
Confidence 2222333344555555555 122467899999999999998642 3689999865
Q ss_pred CCCCCh--------------------HHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 116 PVDLEE--------------------RELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 116 p~~~d~--------------------~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.-+..+ .-..++|..+.+.+|.||+.-|+..
T Consensus 1105 LPniGpGaLK~Re~~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsq 1155 (1560)
T PTZ00395 1105 TPNCGIGAIKELKKDLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSN 1155 (1560)
T ss_pred CCCCCCCcccccccccccccccccchHHHHHHHHHHHhcCCceEEEEccCc
Confidence 443111 1234689999999999999998753
No 64
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=97.10 E-value=0.012 Score=60.96 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=97.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---ee----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VE---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~---------------------- 59 (375)
.+++++|+|.||. +-|+..+.....|....-+-...-++|+=+|-.+ |+
T Consensus 101 DLYyLMDlS~SM~------ddl~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~ 174 (423)
T smart00187 101 DLYYLMDLSYSMK------DDLDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPP 174 (423)
T ss_pred ceEEEEeCCccHH------HHHHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCC
Confidence 3689999999999 4677777777888888777778889999887753 22
Q ss_pred ----EEecCCCCHHHHHHhhcccCCCCCccHH----HHH-HHHHHHhhccCCCCCccEEEEEEcCCCCC-----------
Q psy14660 60 ----VLATLTSDVGRILSKLHQVQPNGNINFM----TGI-RIAHLALKHRQGKNHKMRIIAFVGSPVDL----------- 119 (375)
Q Consensus 60 ----vl~pLT~D~~~Il~~L~~l~~~G~~~l~----~gI-~vA~laLKhr~~k~~~~RIIvfvgSp~~~----------- 119 (375)
.+.+||.|...+...+.+..+.|+.+.- .|| |+|. --++.-=++...|||||+++..-.
T Consensus 175 f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaV-C~~~IGWR~~a~rllv~~TDa~fH~AGDGkLaGIv 253 (423)
T smart00187 175 YGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAV-CTEQIGWREDARRLLVFSTDAGFHFAGDGKLAGIV 253 (423)
T ss_pred cceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHh-hccccccCCCceEEEEEEcCCCccccCCcceeeEe
Confidence 3589999999999999998877766532 222 2221 112221122346899998553211
Q ss_pred ---------------------ChHHHHHHHHHHHhCCcEEEEEEecCCc-chHHHHHHHH
Q psy14660 120 ---------------------EERELTKLAKRLKKEKVNVDIVSFGEEV-VNTELLNTFI 157 (375)
Q Consensus 120 ---------------------d~~~l~~lakkLKk~~I~VdiIgfG~e~-~n~~kL~~fi 157 (375)
|--.+-.++++|+++||.+- .++-... ...++|..+|
T Consensus 254 ~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~I-FAVT~~~~~~Y~~Ls~li 312 (423)
T smart00187 254 QPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINPI-FAVTKKQVSLYKELSALI 312 (423)
T ss_pred cCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceEE-EEEcccchhHHHHHHHhc
Confidence 22267899999999999653 2333332 2456776666
No 65
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.03 E-value=0.01 Score=58.79 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=106.6
Q ss_pred ceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcc-cCC
Q psy14660 4 ESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQ-VQP 80 (375)
Q Consensus 4 EaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~-l~~ 80 (375)
....+++|.|.||.-.. .+....++ ..++. ..++.+.+.++++.+.+.++.+++ .+...+..++.. +.+
T Consensus 38 ~~~~~~~~~~~s~~~~~-~~~~~~~~----~~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 109 (399)
T COG2304 38 ANLTLAIDTSGSMTGAL-LELAKSAA----IELVN---GLNPGDLLSIVTFAGSADVLIPPTGATNKESITAAIDQSLQA 109 (399)
T ss_pred cceEEEeccCCCccchh-HHHHHHHH----HHHhc---ccCCCCceEEEEecCCcceecCcccccCHHHHHHHHhhhhcc
Confidence 45678999999998754 44333333 44443 578999999999999888899988 899999999998 788
Q ss_pred CCCccHHHHHHHHHHHhhc-cCCCCCccEEEEEEcCCCCC---ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 81 NGNINFMTGIRIAHLALKH-RQGKNHKMRIIAFVGSPVDL---EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKh-r~~k~~~~RIIvfvgSp~~~---d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
.|.+....++..+..-+.+ +. .-...++.+..++..+. |...+...++...+.+|.++++|+|... |...++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~tdg~~~~~~~d~~~~~~~~~~~~~~~i~~~~~g~~~~~-n~~~~~~~ 187 (399)
T COG2304 110 GGATAVEASLSLAVELAAKALP-RGTLNRILLLTDGENNLGLVDPSRLSALAKLAAGKGIVLDTLGLGDDV-NEDELTGI 187 (399)
T ss_pred ccccHHHHHHHHHHHHhhhcCC-ccceeeEeeeccCccccCCCCHHHHHHHhcccccCceEEEEEeccccc-chhhhhhh
Confidence 8889888888877754443 43 23334555555443322 6778888888888889999999999873 45555555
Q ss_pred HHhh
Q psy14660 157 ISTL 160 (375)
Q Consensus 157 i~~v 160 (375)
....
T Consensus 188 ~~~~ 191 (399)
T COG2304 188 AAAA 191 (399)
T ss_pred hhcc
Confidence 4443
No 66
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.87 E-value=0.018 Score=59.86 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=87.5
Q ss_pred cceEEEEEeCCcccc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCC
Q psy14660 3 LESTMICVDNSDFMR-NGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPN 81 (375)
Q Consensus 3 lEaivI~lDnSesMr-ngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~ 81 (375)
+-|+++.||+|.||. .|-+.|-.-. .-|+.-+|.. ..|.+.|-+|+|+..++.+ +..+ +..+..|.+.
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQt--ALALhHLv~T---rfrGD~l~~i~Fgr~A~~v-----~v~e-Lt~l~~v~eq 531 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQT--ALALHHLVCT---RFRGDALQIIAFGRYARTV-----TAAE-LTGLAGVYEQ 531 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHH--HHHHHHHHHh---cCCCcceEEEeccchhccc-----CHHH-HhcCCCcccc
Confidence 458999999999996 5544442211 1144444443 5679999999999865432 2222 2334444443
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC----------------CChHHHHHH---HHHHHhCCcEEEEEE
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD----------------LEERELTKL---AKRLKKEKVNVDIVS 142 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~----------------~d~~~l~~l---akkLKk~~I~VdiIg 142 (375)
++++.-||.+|..-|+.- ++-. +.|+|++++.-+ .||..+.++ ..++.+.|+.|.+.-
T Consensus 532 -gTNlhhaL~LA~r~l~Rh-~~~~-~~il~vTDGePtAhle~~DG~~~~f~yp~DP~t~~~Tvr~~d~~~r~G~q~t~Fr 608 (652)
T COG4867 532 -GTNLHHALALAGRHLRRH-AGAQ-PVVLVVTDGEPTAHLEDGDGTSVFFDYPPDPRTIAHTVRGFDDMARLGAQVTIFR 608 (652)
T ss_pred -ccchHHHHHHHHHHHHhC-cccC-ceEEEEeCCCccccccCCCCceEecCCCCChhHHHHHHHHHHHHHhccceeeEEe
Confidence 489999999999877642 2222 334444332111 134444443 346688999999999
Q ss_pred ecCCcchHHHHHHHHHhhCC
Q psy14660 143 FGEEVVNTELLNTFISTLNG 162 (375)
Q Consensus 143 fG~e~~n~~kL~~fi~~vn~ 162 (375)
+|... -|..||+.|..
T Consensus 609 Lg~Dp----gL~~Fv~qva~ 624 (652)
T COG4867 609 LGSDP----GLARFIDQVAR 624 (652)
T ss_pred ecCCH----hHHHHHHHHHH
Confidence 99874 56666666653
No 67
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=96.69 E-value=0.087 Score=51.32 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=95.3
Q ss_pred eEEEEEeCCccccC------CCC----CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce---eEEecCC-C----
Q psy14660 5 STMICVDNSDFMRN------GDF----LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV---EVLATLT-S---- 66 (375)
Q Consensus 5 aivI~lDnSesMrn------gD~----~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a---~vl~pLT-~---- 66 (375)
.++++||.+.|=.+ --| .||-++.+..++-.++..| .....+-+..|+... ..+.++- +
T Consensus 33 nl~vaIDfT~SNg~p~~~~SLHy~~~~~~N~Yq~aI~~vg~il~~y---D~D~~ip~~GFGa~~~~~~~v~~~f~~~~~~ 109 (254)
T cd01459 33 NLIVAIDFTKSNGWPGEKRSLHYISPGRLNPYQKAIRIVGEVLQPY---DSDKLIPAFGFGAIVTKDQSVFSFFPGYSES 109 (254)
T ss_pred eEEEEEEeCCCCCCCCCCCCcccCCCCCccHHHHHHHHHHHHHHhc---CCCCceeeEeecccCCCCCccccccCCCCCC
Confidence 57899999987321 112 4677777777777777654 446788888898741 1122221 1
Q ss_pred ----CHHHHHH----hhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEE
Q psy14660 67 ----DVGRILS----KLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNV 138 (375)
Q Consensus 67 ----D~~~Il~----~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~V 138 (375)
-...++. +|..+...|.++|.--|+.|...-+..... .+--|++|++++.-.|.....+++.+..+.-+.|
T Consensus 110 p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~-~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSI 188 (254)
T cd01459 110 PECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQ-SKYHILLIITDGEITDMNETIKAIVEASKYPLSI 188 (254)
T ss_pred CcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCC-CceEEEEEECCCCcccHHHHHHHHHHHhcCCeEE
Confidence 1244433 456778889999998888776544332221 1245677776665567777788888888888999
Q ss_pred EEEEecCCcchHHHHHHH
Q psy14660 139 DIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 139 diIgfG~e~~n~~kL~~f 156 (375)
-+||+|... ...|+.|
T Consensus 189 iiVGVGd~~--F~~M~~L 204 (254)
T cd01459 189 VIVGVGDGP--FDAMERL 204 (254)
T ss_pred EEEEeCCCC--hHHHHHh
Confidence 999999774 5677766
No 68
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=96.64 E-value=0.11 Score=49.93 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=102.3
Q ss_pred cceEEEEEeCCccccCCCCCCC-HHHHHHHHHHHHHHh------hccCCCCCcEEEEEecCc-----eeE-EecCCCCHH
Q psy14660 3 LESTMICVDNSDFMRNGDFLPT-RLQAQQDAVNLVCHS------KTRSNPENNVGLLAMADS-----VEV-LATLTSDVG 69 (375)
Q Consensus 3 lEaivI~lDnSesMrngD~~Ps-RL~Aq~~Av~~~v~~------k~~~NPe~~VGLVt~ag~-----a~v-l~pLT~D~~ 69 (375)
..-+|+|||-+-.|- =|-|+ |=.-...+++.|... +...+....+|||+|... +.| ...+|.|..
T Consensus 13 ~~~vVfvvEgTAalg--py~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~ 90 (226)
T PF11265_consen 13 QAQVVFVVEGTAALG--PYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQ 90 (226)
T ss_pred cceEEEEEecchhhh--hhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHH
Confidence 346889999886664 34333 333333344444321 112346688999999862 233 568999999
Q ss_pred HHHHhhcccCCCC-C----ccHHHHHHHHHHHhhc----cCC--CC-CccEEEEEEcCCCC-----C----ChHHHHHHH
Q psy14660 70 RILSKLHQVQPNG-N----INFMTGIRIAHLALKH----RQG--KN-HKMRIIAFVGSPVD-----L----EERELTKLA 128 (375)
Q Consensus 70 ~Il~~L~~l~~~G-~----~~l~~gI~vA~laLKh----r~~--k~-~~~RIIvfvgSp~~-----~----d~~~l~~la 128 (375)
++++.|++|+..| + +.+..||..|+..+.. |++ .+ ..+..|++.-||-. + .......++
T Consensus 91 ~fl~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~~~~~~~~~~~~d~la 170 (226)
T PF11265_consen 91 KFLQWLDAIQFSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPVNECPQYSGKTCDQLA 170 (226)
T ss_pred HHHHHHHccCcCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccccCCCcccCCCHHHHH
Confidence 9999999997653 2 3488899999877763 322 11 23455666566542 1 234677889
Q ss_pred HHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCC
Q psy14660 129 KRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKD 164 (375)
Q Consensus 129 kkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~ 164 (375)
..+.++||.++||+= ....+|.++.++.+++.
T Consensus 171 ~~~~~~~I~LSiisP----rklP~l~~Lfeka~~~~ 202 (226)
T PF11265_consen 171 VLISERNISLSIISP----RKLPSLRSLFEKAKGNP 202 (226)
T ss_pred HHHHhcCceEEEEcC----ccCHHHHHHHHhcCCCc
Confidence 999999999999975 33478888888877643
No 69
>KOG2487|consensus
Probab=96.52 E-value=0.04 Score=54.32 Aligned_cols=170 Identities=16% Similarity=0.158 Sum_probs=102.3
Q ss_pred eEEEEEeCCc---cc---cCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEec--------------
Q psy14660 5 STMICVDNSD---FM---RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLAT-------------- 63 (375)
Q Consensus 5 aivI~lDnSe---sM---rngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~p-------------- 63 (375)
-.+++||.+. -| ..++. + +.-..+|+-.|+++.+..|..|+|.||+.... ..-+.|
T Consensus 25 lL~vlId~~p~~Wg~~as~~~~~-t--i~kvl~aivVFlNAHL~~~~~NrvaViA~~~q~~~~lyp~st~~e~~n~~~~~ 101 (314)
T KOG2487|consen 25 LLVVLIDANPCSWGMLASAENWE-T--ISKVLNAIVVFLNAHLAFSRNNRVAVIASHSQVDNYLYPSSTRCEDRNASELD 101 (314)
T ss_pred eEEEEEecCcchhhhhhhhcCce-e--HHHHHHHHHHHHHHHHhhccCCcEEEEEecccccceeccccccCCccCccccC
Confidence 3578889877 23 23444 3 34578899999999999999999999998543 344444
Q ss_pred CC----CCH-------HHHHHhhccc--CC----CC-CccHHHHHHHHH----HHhhccCCCCCccEEEEEEcCCCCCC-
Q psy14660 64 LT----SDV-------GRILSKLHQV--QP----NG-NINFMTGIRIAH----LALKHRQGKNHKMRIIAFVGSPVDLE- 120 (375)
Q Consensus 64 LT----~D~-------~~Il~~L~~l--~~----~G-~~~l~~gI~vA~----laLKhr~~k~~~~RIIvfvgSp~~~d- 120 (375)
|| .++ ..|.+-|..+ .+ .| .+-+..++.-|. ..-|.--+..-+.||+||..++....
T Consensus 102 ~t~~~~~~y~~~~~~d~tiv~ei~~lm~~~~~~~~~~rt~lagals~~L~yi~~~~ke~~~~~lkSRilV~t~t~d~~~q 181 (314)
T KOG2487|consen 102 PTRLVLFDYSEFRTVDDTIVEEIYRLMEHPDKYDVGDRTVLAGALSDALGYINRLHKEEASEKLKSRILVFTLTRDRALQ 181 (314)
T ss_pred chhhhcchhhhhcccchHHHHHHHHHHhCccccccccceeeccchhhccchHhhhhhhhhhhhhhceEEEEEechHHHhh
Confidence 33 111 3334444333 11 12 222333332222 11111112234689999997654322
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhhhC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALISS 186 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ss 186 (375)
-..+....-...|.||.||++.+|.. ...|++-+++++ --|++|+.-+.|--.|+..
T Consensus 182 yi~~MNciFaAqKq~I~Idv~~l~~~---s~~LqQa~D~TG------G~YL~v~~~~gLLqyLlt~ 238 (314)
T KOG2487|consen 182 YIPYMNCIFAAQKQNIPIDVVSLGGD---SGFLQQACDITG------GDYLHVEKPDGLLQYLLTL 238 (314)
T ss_pred hhhHHHHHHHHHhcCceeEEEEecCC---chHHHHHHhhcC------CeeEecCCcchHHHHHHHH
Confidence 23344555666899999999999988 478888888754 3567777544455666644
No 70
>KOG1984|consensus
Probab=96.48 E-value=0.039 Score=61.41 Aligned_cols=130 Identities=21% Similarity=0.238 Sum_probs=89.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHH-HHHHHHHHHHHhhccCCCCCcEEEEEecCce--e-------------------EEe
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQ-AQQDAVNLVCHSKTRSNPENNVGLLAMADSV--E-------------------VLA 62 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~-Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a--~-------------------vl~ 62 (375)
+.|+.||+|-.-.. |++- +..++++.++..+-..-|.-+||||+|-... + +.+
T Consensus 419 afvFmIDVSy~Ai~-----~G~~~a~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfv 493 (1007)
T KOG1984|consen 419 AFVFMIDVSYNAIS-----NGAVKAACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFV 493 (1007)
T ss_pred eEEEEEEeehhhhh-----cchHHHHHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeeccccccc
Confidence 67889999966543 5555 7888888888887778888999999997521 1 112
Q ss_pred cCC--------CCHHHHHHhhcccC----CC--CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC---------
Q psy14660 63 TLT--------SDVGRILSKLHQVQ----PN--GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--------- 119 (375)
Q Consensus 63 pLT--------~D~~~Il~~L~~l~----~~--G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~--------- 119 (375)
|+- .+..-|...|+.|. -. -++-|+.+|++|.+|||... ..+++||..+--..
T Consensus 494 Pf~~g~~V~~~es~~~i~~lLd~Ip~mf~~sk~pes~~g~alqaa~lalk~~~----gGKl~vF~s~Lpt~g~g~kl~~r 569 (1007)
T KOG1984|consen 494 PFLDGLFVNPNESRKVIELLLDSIPTMFQDSKIPESVFGSALQAAKLALKAAD----GGKLFVFHSVLPTAGAGGKLSNR 569 (1007)
T ss_pred ccccCeeccchHHHHHHHHHHHHhhhhhccCCCCchhHHHHHHHHHHHHhccC----CceEEEEecccccccCccccccc
Confidence 222 22333333344441 11 35789999999999999864 37899998553221
Q ss_pred --------C-h--------HHHHHHHHHHHhCCcEEEEEEe
Q psy14660 120 --------E-E--------RELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 120 --------d-~--------~~l~~lakkLKk~~I~VdiIgf 143 (375)
+ + +...++|+.+.+.+|.||+--|
T Consensus 570 ~D~~l~~t~kek~l~~pq~~~y~~LA~e~v~~g~svDlF~t 610 (1007)
T KOG1984|consen 570 DDRRLIGTDKEKNLLQPQDKTYTTLAKEFVESGCSVDLFLT 610 (1007)
T ss_pred chhhhhcccchhhccCcchhHHHHHHHHHHHhCceEEEEEc
Confidence 1 1 2356899999999999998877
No 71
>KOG2353|consensus
Probab=96.47 E-value=0.033 Score=63.83 Aligned_cols=141 Identities=18% Similarity=0.238 Sum_probs=102.7
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecC---------CCCHHHHHHhh
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL---------TSDVGRILSKL 75 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pL---------T~D~~~Il~~L 75 (375)
.++|++|.|.||.. -||...+..++.++.. .-..+-|-+++|...+.-++|- ..+...+.+.+
T Consensus 227 diviLlD~SgSm~g-----~~~~lak~tv~~iLdt---Ls~~Dfvni~tf~~~~~~v~pc~~~~lvqAt~~nk~~~~~~i 298 (1104)
T KOG2353|consen 227 DIVILLDVSGSMSG-----LRLDLAKQTVNEILDT---LSDNDFVNILTFNSEVNPVSPCFNGTLVQATMRNKKVFKEAI 298 (1104)
T ss_pred ceEEEEeccccccc-----hhhHHHHHHHHHHHHh---cccCCeEEEEeeccccCcccccccCceeecchHHHHHHHHHH
Confidence 58999999999985 8999999999999987 4557899999999764444332 24677888999
Q ss_pred cccCCCCCccHHHHHHHHHHHhhccCCCC-------CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 76 HQVQPNGNINFMTGIRIAHLALKHRQGKN-------HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 76 ~~l~~~G~~~l~~gI~vA~laLKhr~~k~-------~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
..+.++|.+++..|++.|-..|....... -.+-|++|. .+..++..++++.-..= ...|+|++..+|.+.+
T Consensus 299 ~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~t-dG~~~~~~~If~~yn~~-~~~Vrvftflig~~~~ 376 (1104)
T KOG2353|consen 299 ETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLIT-DGVDENAKEIFEKYNWP-DKKVRVFTFLIGDEVY 376 (1104)
T ss_pred hhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEee-cCCcccHHHHHHhhccC-CCceEEEEEEeccccc
Confidence 99999999999999999997665322111 113455554 44444555555432211 5679999999999998
Q ss_pred hHHHHHH
Q psy14660 149 NTELLNT 155 (375)
Q Consensus 149 n~~kL~~ 155 (375)
+...++-
T Consensus 377 ~~~~~~w 383 (1104)
T KOG2353|consen 377 DLDEIQW 383 (1104)
T ss_pred ccccchh
Confidence 8776643
No 72
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=96.34 E-value=0.068 Score=50.67 Aligned_cols=137 Identities=12% Similarity=0.163 Sum_probs=88.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHH------HHHHhhccCCCCCcEE--EEEecC--ceeEEecCC--C---CHH
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVN------LVCHSKTRSNPENNVG--LLAMAD--SVEVLATLT--S---DVG 69 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~------~~v~~k~~~NPe~~VG--LVt~ag--~a~vl~pLT--~---D~~ 69 (375)
+.+++||+|.||....| ..|.+-+- .++.. +...|..+|. ++-.+| ...+++|-| . |..
T Consensus 5 aLvLavDvS~SVD~~E~-----~lQ~~G~A~Al~dp~V~~A-i~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~ 78 (205)
T PF06707_consen 5 ALVLAVDVSGSVDADEY-----RLQREGYAAALRDPEVIAA-ILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAE 78 (205)
T ss_pred eeeeeeeccCCCCHHHH-----HHHHHHHHHHHCCHHHHHH-HhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHH
Confidence 57999999999986544 44444221 12222 2345666665 455566 478888877 3 444
Q ss_pred HHHHhhccc--CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHH-HHHHHHHhCCcEEEEEEecCC
Q psy14660 70 RILSKLHQV--QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELT-KLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 70 ~Il~~L~~l--~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~-~lakkLKk~~I~VdiIgfG~e 146 (375)
.+-..|... ...+.|.++.+|..|...|...+... .+|+|=+.|+..+....... ..-..+...||.|.-+.++..
T Consensus 79 a~A~~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~~~-~RrVIDvSGDG~~N~G~~p~~~ard~~~~~GitINgL~I~~~ 157 (205)
T PF06707_consen 79 AFAARLRAAPRRFGGRTAIGSALDFAAALLAQNPFEC-WRRVIDVSGDGPNNQGPRPVTSARDAAVAAGITINGLAILDD 157 (205)
T ss_pred HHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhCCCCC-ceEEEEECCCCCCCCCCCccHHHHHHHHHCCeEEeeeEecCC
Confidence 455555554 22355999999999998887655333 35777787776653321333 444566788999999999887
Q ss_pred cc
Q psy14660 147 VV 148 (375)
Q Consensus 147 ~~ 148 (375)
..
T Consensus 158 ~~ 159 (205)
T PF06707_consen 158 DP 159 (205)
T ss_pred CC
Confidence 64
No 73
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=96.08 E-value=0.19 Score=51.72 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=104.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhccc---CCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV---QPN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l---~~~ 81 (375)
.++|++|.|.+|.-|+-..++|+.+..++-.|...-... .++||+.++++.....+++......+...|..+ .+.
T Consensus 226 ~v~l~lD~~~~m~~~~~~~~~~e~av~~a~~la~~~l~~--gd~vg~~~~~~~~~~~~~p~~G~~~l~~~l~~l~~~~~~ 303 (416)
T COG1721 226 TVVLVLDASRSMLFGSGVASKFEEAVRAAASLAYAALKN--GDRVGLLIFGGGGPKWIPPSRGRRHLARILKALALLRPA 303 (416)
T ss_pred eEEEEEeCCccccCCCCCccHHHHHHHHHHHHHHHHHhC--CCeeEEEEECCCcceeeCCCcchHHHHHHHHHhhccCCC
Confidence 689999999999999999999998887777776554443 589999999988788999998888877777766 343
Q ss_pred CC-ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCC---cch-------
Q psy14660 82 GN-INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEE---VVN------- 149 (375)
Q Consensus 82 G~-~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e---~~n------- 149 (375)
+. ++....... ..+.. .+...+++++.-.. .....+..+...+.+. +.+-++.|.+. ...
T Consensus 304 ~~~~~~~~~~~~--~~~l~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~ 375 (416)
T COG1721 304 PEETDYIRRVSK--LDFLP-----PRRPLVILITDLARHGVDELLLEVLDPLGER-PLVLIVDLRDPAGEAEALRALYAR 375 (416)
T ss_pred CcchhHHHHhhh--hhccC-----cccceEEEeehhhccccchhhhccccccCCC-ceEEEEEecCCccccHHHHHHHHH
Confidence 33 333333222 11111 11233444433332 1233455555555555 77777777442 110
Q ss_pred --HHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 150 --TELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 150 --~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
..+.+++...+.. -|.+++.++.+..+...+.
T Consensus 376 ~~~~~r~~~~~~l~~---~gv~~~~~~~~~~~~~~~~ 409 (416)
T COG1721 376 KLLADRAALARRLRR---LGVLVIDVRTDEDAPAALV 409 (416)
T ss_pred HHHHHHHHHHHHHHH---cCCeEEecCcccchHHHHH
Confidence 1122444455543 2688999998876555544
No 74
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=95.51 E-value=0.0034 Score=37.52 Aligned_cols=17 Identities=35% Similarity=0.689 Sum_probs=15.3
Q ss_pred CChHHHHHHHHHcccCC
Q psy14660 282 MTEEEQIAFAMQMSMQD 298 (375)
Q Consensus 282 m~ee~~~~~a~~ms~~~ 298 (375)
|+||++|++||+|||++
T Consensus 1 ~~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 1 MDEDEDLQRALEMSLEE 17 (18)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhhcc
Confidence 57999999999999975
No 75
>KOG2326|consensus
Probab=95.48 E-value=0.31 Score=52.61 Aligned_cols=144 Identities=14% Similarity=0.139 Sum_probs=96.8
Q ss_pred CCcceEEEEEeCCccccCCCCC-CCHHHHHHHHHHHHHHhhccCC-CCCcEEEEEec----------C----ceeEEecC
Q psy14660 1 MVLESTMICVDNSDFMRNGDFL-PTRLQAQQDAVNLVCHSKTRSN-PENNVGLLAMA----------D----SVEVLATL 64 (375)
Q Consensus 1 m~lEaivI~lDnSesMrngD~~-PsRL~Aq~~Av~~~v~~k~~~N-Pe~~VGLVt~a----------g----~a~vl~pL 64 (375)
|+-|++++++|++.+|.+-+=. -+-|+.+..++..++.+|+-.+ --+-||+|.|. | +..|+-|.
T Consensus 2 s~se~ttfilDvG~~Ms~~~~~~~S~fE~a~~y~~~~lsrK~fa~rktD~is~vlyncD~ten~legg~~fqnisvl~p~ 81 (669)
T KOG2326|consen 2 SSSESTTFILDVGPSMSKNNETGKSNFEKAMAYLEYTLSRKSFASRKTDWISCVLYNCDVTENSLEGGNVFQNISVLAPV 81 (669)
T ss_pred CCCcceEEEEecCccccccCCCccccHHHHHHHHHHHHHHHHhhccCCceEEEEEecCCCccCccccccccceeEEeecc
Confidence 4568888888999999988811 3589999999999999998877 77889999987 1 13456564
Q ss_pred C-CCHHHHHHhhcccCCC--CCccHHHHHHHHHH-HhhccC-CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEE
Q psy14660 65 T-SDVGRILSKLHQVQPN--GNINFMTGIRIAHL-ALKHRQ-GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVD 139 (375)
Q Consensus 65 T-~D~~~Il~~L~~l~~~--G~~~l~~gI~vA~l-aLKhr~-~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~Vd 139 (375)
+ .+.-.++..+.+..+. ...+|..+|-+.+- ...|.. ++...+|+|+.....+..-.+++. ++..|++.+|.+-
T Consensus 82 ~tpaf~~l~k~~~~~~qqns~q~Df~gal~vs~dL~~qhe~~~k~~~kr~Il~~~~l~~dfsd~~~-ive~l~~~didL~ 160 (669)
T KOG2326|consen 82 TTPAFIGLIKRLKQYCQQNSHQSDFEGALSVSQDLLVQHEDIKKQFQKRKILKQIVLFTDFSDDLF-IVEDLTDEDIDLL 160 (669)
T ss_pred cchhhHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhccchhhceEEEEeecccccchhhHH-HHHHHhhcCccee
Confidence 3 4555666666644333 23567777776553 334543 222334555444333332344444 9999999999999
Q ss_pred EEEecC
Q psy14660 140 IVSFGE 145 (375)
Q Consensus 140 iIgfG~ 145 (375)
++|+-.
T Consensus 161 ~~gldf 166 (669)
T KOG2326|consen 161 TEGLDF 166 (669)
T ss_pred EeeccC
Confidence 998754
No 76
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=95.12 E-value=0.42 Score=46.31 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCC------------H----------HHHHHhhccc--CCC--
Q psy14660 29 QQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSD------------V----------GRILSKLHQV--QPN-- 81 (375)
Q Consensus 29 q~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D------------~----------~~Il~~L~~l--~~~-- 81 (375)
....+-.|+++.+.-|..|+|.||+--+ +.+.|-|-... . +..++.+-++ .++
T Consensus 46 vl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~s~~k~se~e~tr~sd~yrrfr~vde~~i~eiyrl~e~~~k~ 125 (296)
T COG5242 46 VLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSESALKASESENTRNSDMYRRFRNVDETDITEIYRLIEHPHKN 125 (296)
T ss_pred HHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcchhhhhhcccCccchhhhhhhcccchHHHHHHHHHHhCcccc
Confidence 4466778899999999999999988654 45555443322 1 1123333333 122
Q ss_pred -CCccHHHHHHHHHHHhhccCCC-CCccEEEEEEcCCCCCChHH----HHHHHHHHHhCCcEEEEEEecCCcchHHHHHH
Q psy14660 82 -GNINFMTGIRIAHLALKHRQGK-NHKMRIIAFVGSPVDLEERE----LTKLAKRLKKEKVNVDIVSFGEEVVNTELLNT 155 (375)
Q Consensus 82 -G~~~l~~gI~vA~laLKhr~~k-~~~~RIIvfvgSp~~~d~~~----l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~ 155 (375)
....++.|+..+....-|++++ .-+.||+||..|+- |.+. ..+-+--..|.||+|+++.++.. ..-|++
T Consensus 126 sqr~~v~gams~glay~n~~~~e~slkSriliftlsG~--d~~~qYip~mnCiF~Aqk~~ipI~v~~i~g~---s~fl~Q 200 (296)
T COG5242 126 SQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLSGR--DRKDQYIPYMNCIFAAQKFGIPISVFSIFGN---SKFLLQ 200 (296)
T ss_pred cceeehhhhhhhhHHHHhhhcccccccceEEEEEecCc--hhhhhhchhhhheeehhhcCCceEEEEecCc---cHHHHH
Confidence 3467777777777667788765 35689999998652 3221 11222334788999999999876 466777
Q ss_pred HHHhhCCCCCCCeeEEEecCCCchhhHhhhCCc
Q psy14660 156 FISTLNGKDGSGSHMVTVAVGPHLSDALISSPI 188 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~sspi 188 (375)
-.+++| --|++|..-.-|-..|+++-.
T Consensus 201 ~~daTg------G~Yl~ve~~eGllqyL~~~lf 227 (296)
T COG5242 201 CCDATG------GDYLTVEDTEGLLQYLLSLLF 227 (296)
T ss_pred HhhccC------CeeEeecCchhHHHHHHHHhc
Confidence 777654 367777664445566666533
No 77
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=94.64 E-value=0.0095 Score=35.62 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHhcHHH
Q psy14660 210 NEDPELALALRVSMEE 225 (375)
Q Consensus 210 ~~DPELa~Alr~Slee 225 (375)
+.|++|+.||++||+|
T Consensus 2 ~Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 2 DEDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhcc
Confidence 4689999999999987
No 78
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=94.41 E-value=0.027 Score=36.67 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHhcHHHHHHH
Q psy14660 210 NEDPELALALRVSMEEQRAR 229 (375)
Q Consensus 210 ~~DPELa~Alr~Sleee~~r 229 (375)
+.|++|++||++||+|.+.+
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~~ 20 (26)
T smart00726 1 DEDEDLQLALELSLQEAEES 20 (26)
T ss_pred ChHHHHHHHHHHhHHHhhhc
Confidence 36899999999999988765
No 79
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.29 E-value=0.62 Score=50.47 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC------------hHHHHHHHHHHHhC-CcEEEEEEecCCc
Q psy14660 87 MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE------------ERELTKLAKRLKKE-KVNVDIVSFGEEV 147 (375)
Q Consensus 87 ~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d------------~~~l~~lakkLKk~-~I~VdiIgfG~e~ 147 (375)
+.||..|+.-|..|+. .+||+++++++...| +.+|..+++...+. +|.+--||+|..+
T Consensus 499 GeAl~wa~~rL~~R~e---~rKiL~ViSDG~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~Dv 569 (600)
T TIGR01651 499 GEALMWAHQRLIARPE---QRRILMMISDGAPVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHDV 569 (600)
T ss_pred hHHHHHHHHHHhcCcc---cceEEEEEeCCCcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeeccccH
Confidence 6788888887777763 356666664333211 33577777777775 8999999999873
No 80
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=94.01 E-value=2 Score=41.32 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=73.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcE-EEEEec--Cc-ee---EEecCCCCHHHHHHhhcc
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNV-GLLAMA--DS-VE---VLATLTSDVGRILSKLHQ 77 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~V-GLVt~a--g~-a~---vl~pLT~D~~~Il~~L~~ 77 (375)
++-|+||+|.||+. .+...+..++..|.+..-+.+--..| |.=|.+ |+ ++ +-.--+..++.+...+|-
T Consensus 14 ~VtlLID~SGSMrg-----r~~~vA~~~adila~aL~~~gvp~EVlGFtT~aw~gg~~~~~w~~~G~p~~pgrln~l~h~ 88 (219)
T PF11775_consen 14 VVTLLIDCSGSMRG-----RPIEVAALCADILARALERCGVPVEVLGFTTRAWKGGRSREAWLAAGRPRYPGRLNDLRHI 88 (219)
T ss_pred EEEEEEeCCcCCCC-----ChHHHHHHHHHHHHHHHHhCCCCeEEEeeecCCcCCcchHHHHHhcCCCCCChHHHHHHHH
Confidence 46789999999997 23444444555566554444333222 444442 11 11 001112356677666665
Q ss_pred cC-----C----------------CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC-------C-----hHHH
Q psy14660 78 VQ-----P----------------NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL-------E-----EREL 124 (375)
Q Consensus 78 l~-----~----------------~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~-------d-----~~~l 124 (375)
+. | ..+--=+.||..|+.=|..|+ ..+||++.+++.... + ..+|
T Consensus 89 vyk~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~---e~rkiLiViSDG~P~d~st~~~n~~~~L~~HL 165 (219)
T PF11775_consen 89 VYKDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARP---EQRKILIVISDGAPADDSTLSANDGDYLDAHL 165 (219)
T ss_pred HHHhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCC---ccceEEEEEeCCCcCcccccccCChHHHHHHH
Confidence 51 1 011112467777776665554 335676666433221 1 3466
Q ss_pred HHHHHHHHh-CCcEEEEEEecCCc
Q psy14660 125 TKLAKRLKK-EKVNVDIVSFGEEV 147 (375)
Q Consensus 125 ~~lakkLKk-~~I~VdiIgfG~e~ 147 (375)
...++...+ .+|.+-.||+|...
T Consensus 166 r~vi~~ie~~~~Vel~aiGIg~D~ 189 (219)
T PF11775_consen 166 RQVIAEIETRSDVELIAIGIGHDV 189 (219)
T ss_pred HHHHHHHhccCCcEEEEEEcCCCc
Confidence 677777765 47988888888764
No 81
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=93.29 E-value=2.2 Score=38.20 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-e---eE--EecCCCC--------HHHH----HHhhcccCCCCC
Q psy14660 22 LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-V---EV--LATLTSD--------VGRI----LSKLHQVQPNGN 83 (375)
Q Consensus 22 ~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a---~v--l~pLT~D--------~~~I----l~~L~~l~~~G~ 83 (375)
.||.++.+..++-.++..| ++...+-+.-|++. + .+ .-|++.+ ...+ .+++.++++.|.
T Consensus 9 ~~N~Y~~ai~~vg~il~~Y---d~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v~l~GP 85 (146)
T PF07002_consen 9 QPNPYQQAIRAVGEILQDY---DSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKVQLSGP 85 (146)
T ss_pred CCCHHHHHHHHHHHHHHhh---ccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhheEECCC
Confidence 5899999999999999877 34556667777764 2 11 2455543 3344 445667788899
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
++|.--|+.|...-+.+.....+=-|++++.+..-.|.++-.++.-...+.-++|=+||+|
T Consensus 86 T~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 86 TNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred ccHHHHHHHHHHHHhhhccCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999888877754442211222233444444433346555566665666777888888887
No 82
>KOG1327|consensus
Probab=93.24 E-value=2.9 Score=44.95 Aligned_cols=147 Identities=12% Similarity=0.117 Sum_probs=87.8
Q ss_pred EEEEEeCCcc---------ccCCC-CCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-ee---E--EecCCCC--
Q psy14660 6 TMICVDNSDF---------MRNGD-FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VE---V--LATLTSD-- 67 (375)
Q Consensus 6 ivI~lDnSes---------MrngD-~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~---v--l~pLT~D-- 67 (375)
.+|.||.+.| ...-| ..||=++-+..+|-.+|+.| ++..++.-.-|+.. +- + --.+..+
T Consensus 288 f~vgIDfTaSNg~p~~~sSLHyi~p~~~N~Y~~Ai~~vG~~lq~y---dsdk~fpa~GFGakip~~~~vs~~f~ln~~~~ 364 (529)
T KOG1327|consen 288 FTVGIDFTASNGDPRNPSSLHYIDPHQPNPYEQAIRSVGETLQDY---DSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPE 364 (529)
T ss_pred eEEEEEEeccCCCCCCCCcceecCCCCCCHHHHHHHHHhhhhccc---CCCCccccccccccCCCCcccccceeecCCCC
Confidence 5778888775 22223 67899998888888888876 44556665556554 11 1 1122222
Q ss_pred ----------HHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcE
Q psy14660 68 ----------VGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVN 137 (375)
Q Consensus 68 ----------~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~ 137 (375)
...-..+|..|++.|.|+|.-=|..|..--+...+...+=-|++++.++.-.|.+.-...+=...+.=.+
T Consensus 365 ~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~lPlS 444 (529)
T KOG1327|consen 365 DPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNTAGQYHVLLIITDGVVTDMKETRDAIVSASDLPLS 444 (529)
T ss_pred CCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccCCcceEEEEEEeCCccccHHHHHHHHHhhccCCeE
Confidence 2233455677788899999877764443222111112222455555555545666666666566677777
Q ss_pred EEEEEecCCcchHHHHHHHH
Q psy14660 138 VDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 138 VdiIgfG~e~~n~~kL~~fi 157 (375)
|-|||+|... .+.|+.|-
T Consensus 445 IIiVGVGd~d--f~~M~~lD 462 (529)
T KOG1327|consen 445 IIIVGVGDAD--FDMMRELD 462 (529)
T ss_pred EEEEEeCCCC--HHHHHHhh
Confidence 7788888655 67888774
No 83
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=92.71 E-value=0.53 Score=42.60 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.|..+|...+++.. .....+|+||+|+.+ +..+-..+|+.|...|+.|.|+.++...
T Consensus 8 Ag~~~a~~i~~~~~-~~~~~~v~il~G~Gn--NGgDgl~~AR~L~~~G~~V~v~~~~~~~ 64 (169)
T PF03853_consen 8 AGRAIAELIRKLFG-SPKGPRVLILCGPGN--NGGDGLVAARHLANRGYNVTVYLVGPPE 64 (169)
T ss_dssp HHHHHHHHHHHHST-CCTT-EEEEEE-SSH--HHHHHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred HHHHHHHHHHHHhc-ccCCCeEEEEECCCC--ChHHHHHHHHHHHHCCCeEEEEEEeccc
Confidence 45667776666553 345579999998854 6889999999999999999998887744
No 84
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=92.08 E-value=0.064 Score=34.89 Aligned_cols=19 Identities=32% Similarity=0.726 Sum_probs=16.3
Q ss_pred ChHHHHHHHHHcccCCCCc
Q psy14660 283 TEEEQIAFAMQMSMQDTQE 301 (375)
Q Consensus 283 ~ee~~~~~a~~ms~~~~~~ 301 (375)
+||++|++||+||+++...
T Consensus 1 ~EDe~Lq~Ai~lSl~e~e~ 19 (26)
T smart00726 1 DEDEDLQLALELSLQEAEE 19 (26)
T ss_pred ChHHHHHHHHHHhHHHhhh
Confidence 4789999999999998654
No 85
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=91.94 E-value=0.93 Score=39.31 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=44.8
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhccc--CCCCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV--QPNGN 83 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l--~~~G~ 83 (375)
++|+||+|.||.+.++. ||. ..+..+++.+ ..+|-||.+-...+-...+.. ....+..+ .-+|+
T Consensus 1 i~vaiDtSGSis~~~l~--~fl---~ev~~i~~~~-----~~~v~vi~~D~~v~~~~~~~~----~~~~~~~~~~~GgGG 66 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELR--RFL---SEVAGILRRF-----PAEVHVIQFDAEVQDVQVFRS----LEDELRDIKLKGGGG 66 (126)
T ss_pred CEEEEECCCCCCHHHHH--HHH---HHHHHHHHhC-----CCCEEEEEECCEeeeeeEEec----ccccccccccCCCCC
Confidence 47999999999764432 333 3334444432 446888876554444444444 11223333 44588
Q ss_pred ccHHHHHHHHH
Q psy14660 84 INFMTGIRIAH 94 (375)
Q Consensus 84 ~~l~~gI~vA~ 94 (375)
|+|.-.++-+.
T Consensus 67 Tdf~pvf~~~~ 77 (126)
T PF09967_consen 67 TDFRPVFEYLE 77 (126)
T ss_pred CcchHHHHHHH
Confidence 99999999776
No 86
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=91.26 E-value=5 Score=43.27 Aligned_cols=130 Identities=12% Similarity=0.161 Sum_probs=81.6
Q ss_pred cceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE-ecCCCCHHHHHHhhcccCCC
Q psy14660 3 LESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL-ATLTSDVGRILSKLHQVQPN 81 (375)
Q Consensus 3 lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl-~pLT~D~~~Il~~L~~l~~~ 81 (375)
|+.++.+.|+|.||.-. --...-++-+++... ..|--.=.+|||+..|+++ +... +...-+..+.+..-+
T Consensus 340 l~n~iav~DvSGSM~~~------pm~vaiaLgll~ae~--~~~pf~~~~ITFs~~P~~~~i~g~-~l~ekv~~~~~~~wg 410 (534)
T PF11443_consen 340 LENCIAVCDVSGSMSGP------PMDVAIALGLLIAEL--NKGPFKGRFITFSENPQLHKIKGD-TLREKVRFIRRMDWG 410 (534)
T ss_pred ccceEEEEecCCccCcc------HHHHHHHHHHHHHHh--cccccCCeEEeecCCceEEEecCC-CHHHHHHHHHhCCcc
Confidence 68999999999999875 234445777788775 3344455789999987664 4333 555555566666777
Q ss_pred CCccHHHHHHHHHH-HhhccC-CCCCccEEEEEEcCCCCC-----C---hHHHHHHHHHHHhCCcEEEEE
Q psy14660 82 GNINFMTGIRIAHL-ALKHRQ-GKNHKMRIIAFVGSPVDL-----E---ERELTKLAKRLKKEKVNVDIV 141 (375)
Q Consensus 82 G~~~l~~gI~vA~l-aLKhr~-~k~~~~RIIvfvgSp~~~-----d---~~~l~~lakkLKk~~I~VdiI 141 (375)
+.|+|.....+-.. |.++.- ...-.+||+||.+=-... + ..+...+.++.++.|..+=-|
T Consensus 411 ~nTn~~aVFdlIL~~Av~~~l~~e~M~k~lfV~SDMeFD~a~~~~~~~w~T~~e~i~~~f~~aGY~~P~i 480 (534)
T PF11443_consen 411 MNTNFQAVFDLILETAVKNKLKQEDMPKRLFVFSDMEFDQASNSSDRPWETNFEAIKRKFEEAGYELPEI 480 (534)
T ss_pred cCCcHHHHHHHHHHHHHHcCCChHHCCceEEEEeccccccccccccCccccHHHHHHHHHHHhCCCCCce
Confidence 89999988876553 344321 112347899987332221 1 234455566666666544333
No 87
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=89.82 E-value=8.1 Score=43.30 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=83.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHH-HHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE-ecCCCC---------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQ-AQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL-ATLTSD--------------- 67 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~-Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl-~pLT~D--------------- 67 (375)
..|+.||+|-.... +|+- +..+++..-+..+-+-.|..+|++|.|-+....+ .++-.|
T Consensus 278 ~yvFlIDVS~~a~~-----~g~~~a~~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~~~~~~~vsdld~pFlP 352 (861)
T COG5028 278 VYVFLIDVSFEAIK-----NGLVKAAIRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDLDEQMLIVSDLDEPFLP 352 (861)
T ss_pred EEEEEEEeehHhhh-----cchHHHHHHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCCccceeeeccccccccc
Confidence 57899999965432 4544 6666666666555566799999999998653332 222221
Q ss_pred -----------H-----HHHHHhhcccCC-CC--CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC----------
Q psy14660 68 -----------V-----GRILSKLHQVQP-NG--NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---------- 118 (375)
Q Consensus 68 -----------~-----~~Il~~L~~l~~-~G--~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---------- 118 (375)
. +.++.....+.. .+ ...++.||++|++.++. ...+||+|+++.-+
T Consensus 353 f~s~~fv~pl~~~k~~~etLl~~~~~If~d~~~pk~~~G~aLk~a~~l~g~-----~GGkii~~~stlPn~G~Gkl~~r~ 427 (861)
T COG5028 353 FPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGG-----TGGKIIVFLSTLPNMGIGKLQLRE 427 (861)
T ss_pred CCcchhcccHHHHHHHHHHHHHHhhhhhcccCCCccccCHHHHHHHHHhhc-----cCceEEEEeecCCCcccccccccc
Confidence 0 012222233311 12 35778999999987765 34788999866111
Q ss_pred --------CChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 119 --------LEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 119 --------~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+..+--.+++..+.|-+|.||+--+.+.
T Consensus 428 d~e~~ll~c~d~fYk~~a~e~~k~gIsvd~Flt~~~ 463 (861)
T COG5028 428 DKESSLLSCKDSFYKEFAIECSKVGISVDLFLTSED 463 (861)
T ss_pred cchhhhccccchHHHHHHHHHHHhcceEEEEecccc
Confidence 1222235789999999999999888664
No 88
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=88.52 E-value=7 Score=42.31 Aligned_cols=161 Identities=16% Similarity=0.173 Sum_probs=88.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhcc-CCCCCcEE----EEEecC--ceeEEec--CCCCH---HHHH
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTR-SNPENNVG----LLAMAD--SVEVLAT--LTSDV---GRIL 72 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~-~NPe~~VG----LVt~ag--~a~vl~p--LT~D~---~~Il 72 (375)
++-|+||+|-||.+ -+.-++..+..|.++..- .++..-+| +.+|.+ .+.|.+- -..|. +++-
T Consensus 448 a~TLLvD~S~St~a------~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes~~~~~~ 521 (637)
T COG4548 448 AFTLLVDVSASTDA------KMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDESMGETVG 521 (637)
T ss_pred eeEEEeecccchHH------HhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccccccccc
Confidence 57799999999975 233344444444433211 12222232 334443 1322111 11111 2334
Q ss_pred HhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccE-EEEEEcCCCC-CC--h-----HHHHHHHHHHHhCCcEEEEEEe
Q psy14660 73 SKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMR-IIAFVGSPVD-LE--E-----RELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 73 ~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~R-IIvfvgSp~~-~d--~-----~~l~~lakkLKk~~I~VdiIgf 143 (375)
-.|-.++|+--+..+.||+.|..-|.||++ ++| +|||+++.-+ -| + .+-...+-..+|.||.|.-|-+
T Consensus 522 ~RImALePg~ytR~G~AIR~As~kL~~rpq---~qklLivlSDGkPnd~d~YEgr~gIeDTr~AV~eaRk~Gi~VF~Vtl 598 (637)
T COG4548 522 PRIMALEPGYYTRDGAAIRHASAKLMERPQ---RQKLLIVLSDGKPNDFDHYEGRFGIEDTREAVIEARKSGIEVFNVTL 598 (637)
T ss_pred hhheecCccccccccHHHHHHHHHHhcCcc---cceEEEEecCCCcccccccccccchhhHHHHHHHHHhcCceEEEEEe
Confidence 455677898889999999999998988874 345 4555433222 12 1 2334556677999999999988
Q ss_pred cCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 144 GEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 144 G~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
..+. ....-..|+. |- |+.|+.=.+|-++|.
T Consensus 599 d~ea-~~y~p~~fgq--------ng-Ya~V~~v~~LP~~L~ 629 (637)
T COG4548 599 DREA-ISYLPALFGQ--------NG-YAFVERVAQLPGALP 629 (637)
T ss_pred cchh-hhhhHHHhcc--------Cc-eEEccchhhcchhHH
Confidence 7653 2333344532 12 255554345666655
No 89
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=86.43 E-value=1.8 Score=45.30 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=87.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---e-----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---V----------------------- 58 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a----------------------- 58 (375)
..++++|+|.||++ -|+-.+.....|....-+.-...++|+=+|.++ |
T Consensus 104 DLYyLmDlS~Sm~d------dl~~l~~lg~~l~~~~~~it~~~~~GfGsfvdK~~~P~~~~~p~~l~~pc~~~~~~c~~~ 177 (426)
T PF00362_consen 104 DLYYLMDLSYSMKD------DLENLKSLGQDLAEEMRNITSNFRLGFGSFVDKPVMPFVSTTPEKLKNPCPSKNPNCQPP 177 (426)
T ss_dssp EEEEEEE-SGGGHH------HHHHHCCCCHHHHHHHHTT-SSEEEEEEEESSSSSTTTST-SSHCHHSTSCCTTS--B--
T ss_pred eEEEEeechhhhhh------hHHHHHHHHHHHHHHHHhcCccceEechhhcccccCCcccCChhhhcCcccccCCCCCCC
Confidence 36899999999984 344444434445555545556789999998753 1
Q ss_pred ---eEEecCCCCHHHHHHhhcccCCCCCccH-----HHHHHHHHHHhhccCCCCCccEEEEEEcCCCC------------
Q psy14660 59 ---EVLATLTSDVGRILSKLHQVQPNGNINF-----MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD------------ 118 (375)
Q Consensus 59 ---~vl~pLT~D~~~Il~~L~~l~~~G~~~l-----~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~------------ 118 (375)
....+||.|...+...+++..+.|+.+. -.-+|+|. --++.-=.+...|||||+.+..-
T Consensus 178 ~~f~~~l~Lt~~~~~F~~~v~~~~is~n~D~PEgg~dal~Qa~v-C~~~igWr~~a~~llv~~TD~~fH~agDg~l~gi~ 256 (426)
T PF00362_consen 178 FSFRHVLSLTDDITEFNEEVNKQKISGNLDAPEGGLDALMQAAV-CQEEIGWRNEARRLLVFSTDAGFHFAGDGKLAGIV 256 (426)
T ss_dssp -SEEEEEEEES-HHHHHHHHHTS--B--SSSSBSHHHHHHHHHH--HHHHT--STSEEEEEEEESS-B--TTGGGGGT--
T ss_pred eeeEEeecccchHHHHHHhhhhccccCCCCCCccccchheeeee-cccccCcccCceEEEEEEcCCccccccccccceee
Confidence 2367889999999999998876665433 22223221 11111112334688888754210
Q ss_pred --------------------CChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 119 --------------------LEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 119 --------------------~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
-|--.+-.+.++|.++||.+- .++-... ...++.+.+.+. ++....+-...
T Consensus 257 ~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~~I-FAVt~~~--~~~Y~~L~~~i~-----~s~vg~L~~dS 327 (426)
T PF00362_consen 257 KPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNINPI-FAVTKDV--YSIYEELSNLIP-----GSSVGELSSDS 327 (426)
T ss_dssp S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEEEE-EEEEGGG--HHHHHHHHHHST-----TEEEEEESTTS
T ss_pred ecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCEEE-EEEchhh--hhHHHHHhhcCC-----CceecccccCc
Confidence 022246788999999998543 3343333 334444544443 46666665543
No 90
>KOG1986|consensus
Probab=86.06 E-value=19 Score=40.12 Aligned_cols=152 Identities=23% Similarity=0.272 Sum_probs=93.3
Q ss_pred EEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE-------------e---cCC-----
Q psy14660 7 MICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL-------------A---TLT----- 65 (375)
Q Consensus 7 vI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl-------------~---pLT----- 65 (375)
+++||.= | .+.+|++.|+++...+.- ..|.-.||||+|+..+.|+ . .+|
T Consensus 125 ~fVvDtc--~-----~eeeL~~LkssL~~~l~l---LP~~alvGlItfg~~v~v~el~~~~~sk~~VF~G~ke~s~~q~~ 194 (745)
T KOG1986|consen 125 VFVVDTC--M-----DEEELQALKSSLKQSLSL---LPENALVGLITFGTMVQVHELGFEECSKSYVFSGNKEYSAKQLL 194 (745)
T ss_pred EEEEeec--c-----ChHHHHHHHHHHHHHHhh---CCCcceEEEEEecceEEEEEcCCCcccceeEEeccccccHHHHH
Confidence 5666643 2 358999999999888763 4556678999998533332 1 111
Q ss_pred ------C----------CHHHH-----------HHhhcccCC------CCC---ccHHHHHHHHHHHhhccCCCCCccEE
Q psy14660 66 ------S----------DVGRI-----------LSKLHQVQP------NGN---INFMTGIRIAHLALKHRQGKNHKMRI 109 (375)
Q Consensus 66 ------~----------D~~~I-----------l~~L~~l~~------~G~---~~l~~gI~vA~laLKhr~~k~~~~RI 109 (375)
. ...++ ...|..|++ .|. -..+.||.+|...|... ..+...||
T Consensus 195 ~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~RcTG~Al~iA~~Ll~~c-~p~~g~rI 273 (745)
T KOG1986|consen 195 DLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPLRCTGVALSIASGLLEGC-FPNTGARI 273 (745)
T ss_pred HHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcccchhHHHHHHHHHhccc-CCCCcceE
Confidence 1 11111 112222322 132 24677888888766543 34566899
Q ss_pred EEEEcCCCCCC------------------------------hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 110 IAFVGSPVDLE------------------------------ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 110 IvfvgSp~~~d------------------------------~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
|.|+|+|.+.. -+-..++|+++..+|..|||.+-+-..--.-.|+.+++.
T Consensus 274 v~f~gGPcT~GpG~vv~~el~~piRshhdi~~d~a~y~kKa~KfY~~La~r~~~~ghvlDifa~~lDQvGi~EMk~l~~~ 353 (745)
T KOG1986|consen 274 VLFAGGPCTRGPGTVVSRELKEPIRSHHDIEKDNAPYYKKAIKFYEKLAERLANQGHVLDIFAAALDQVGILEMKPLVES 353 (745)
T ss_pred EEeccCCCCcCCceecchhhcCCCcCcccccCcchHHHHHHHHHHHHHHHHHHhCCceEeeeeeeccccchHHHHHHhhc
Confidence 99999975411 122457899999999999998887766555666666554
Q ss_pred hCCCCCCCeeEEEecC
Q psy14660 160 LNGKDGSGSHMVTVAV 175 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~ 175 (375)
+|-++|--..
T Consensus 354 ------TGG~lvl~ds 363 (745)
T KOG1986|consen 354 ------TGGVLVLGDS 363 (745)
T ss_pred ------CCcEEEEecc
Confidence 2346555444
No 91
>KOG2327|consensus
Probab=85.83 E-value=13 Score=40.59 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=87.7
Q ss_pred CcceEEEEEeCCccccCCCC---CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-------eeEEecCC----CC
Q psy14660 2 VLESTMICVDNSDFMRNGDF---LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-------VEVLATLT----SD 67 (375)
Q Consensus 2 ~lEaivI~lDnSesMrngD~---~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-------a~vl~pLT----~D 67 (375)
..|++.+|||.|.+|+.++- .++=|.-...++..++-.+.-.||...+|++.++.. -..+.+|- .-
T Consensus 17 ~~~~ilfvi~~~~s~~~~~~~e~~lspl~~~L~~~~~l~~~~vitn~~~~~~v~~y~~~~~~~~~~~~~l~~l~d~~~~~ 96 (602)
T KOG2327|consen 17 GKEAILFVIDVNPSMKAEEPDEFKLSPLKMILDCIDRLCIQLVITNPIDSVGVLFYGTEETEGLENNTLLFPLGDLGQEE 96 (602)
T ss_pred cccceEEEEecCHHhhccCcccchhhhHHHHHHHHHHHHhheeecCCCCccceEeecccccccCccceEEeeccccChHH
Confidence 36899999999999998764 588899899999999999999999999999888731 13333332 33
Q ss_pred HHHHHHhhccc------CCCC----CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC--ChHHHHHHHHHHHhCC
Q psy14660 68 VGRILSKLHQV------QPNG----NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--EERELTKLAKRLKKEK 135 (375)
Q Consensus 68 ~~~Il~~L~~l------~~~G----~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~--d~~~l~~lakkLKk~~ 135 (375)
.-+|+.....- .-.| ...|.+-|..+...+-..+.+...+||.+|+.-+... +........++++...
T Consensus 97 ~~k~~~~~e~~~q~~~~~~~~~~~~~s~ls~vl~~c~~~~~~~~~~~~~krv~l~Td~d~P~~~~~~~~~a~l~r~k~~~ 176 (602)
T KOG2327|consen 97 VKKILELFEEENQLSAVNFYGGMHQKSDLSNVLNYCKRMVFASQKKLSNKRVFLFTDNDNPHERDDFLESAHLQRAKDLV 176 (602)
T ss_pred HHHHHHHhhhhhhhhhhhccCcccccccHHHHHHHHHHHHHHHhhhcccceEEEEecCCCcccccchHHHhhhhhhhhcc
Confidence 33333332211 1111 2357777777775443344445558999998655432 3333333333333332
Q ss_pred cEEEEEEecC
Q psy14660 136 VNVDIVSFGE 145 (375)
Q Consensus 136 I~VdiIgfG~ 145 (375)
- .+|||+.
T Consensus 177 ~--~~i~~~~ 184 (602)
T KOG2327|consen 177 T--KDIGFHH 184 (602)
T ss_pred c--ceeeeee
Confidence 2 2667763
No 92
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=83.06 E-value=9.5 Score=40.32 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.|..+|...+++.+. ...+||+||.|.++ +.++-.-+|+.|+..|+.|.|+-++...
T Consensus 42 AG~ava~~i~~~~~~-~~~~~VlVlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 42 AGLSVASAIAEVYSP-SEYRRVLALCGPGN--NGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred HHHHHHHHHHHhccc-ccCCEEEEEECCCC--CHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 455666655554332 12257888887755 6888999999999999999999888644
No 93
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=82.37 E-value=14 Score=33.79 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=33.8
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
...+|+|+|.... -....+.++++++++. ++.+.++|-|... ..++.+++..+
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~ 243 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGPLR---EELEALAKELG 243 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCccH---HHHHHHHHhcC
Confidence 3567788776442 2455678888888886 6777777755543 44555666554
No 94
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=82.28 E-value=20 Score=34.01 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLN 161 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn 161 (375)
.|..+|...++..+... ..|++||.|..+ +.++-+-.|+.|+..|..|+|+-.|.... .++...++...++
T Consensus 32 AG~aVa~~i~~~~~~~~-~~~v~vlcG~Gn--NGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~ 103 (203)
T COG0062 32 AGLAVARAILREYPLGR-ARRVLVLCGPGN--NGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLG 103 (203)
T ss_pred HHHHHHHHHHHHcCccc-CCEEEEEECCCC--ccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhc
Confidence 56667777777665432 467888887755 68888999999999999999999997653 3444444444433
No 95
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=81.87 E-value=22 Score=33.06 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=31.9
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhC-CcEEEEEEecCCcchHHHHHHHHH
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKE-KVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~-~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
...+|+|+|.-.. -+...+.++++++++. ++.+.++|-|... +.+..++.
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~~~---~~~~~~~~ 270 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGPEK---EELKELAK 270 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcccH---HHHHHHHH
Confidence 3567777776433 2456778888888876 7888887766543 34444433
No 96
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=81.49 E-value=30 Score=32.29 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhC-CcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKE-KVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~-~I~VdiIgfG~e 146 (375)
..+|+|+|.... -+...+.++++++++. ++.+.++|-|..
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~~ 238 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGPA 238 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCch
Confidence 467788886432 2456677888888764 788888886654
No 97
>KOG2941|consensus
Probab=80.88 E-value=6.1 Score=40.92 Aligned_cols=63 Identities=27% Similarity=0.274 Sum_probs=45.9
Q ss_pred CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 102 GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 102 ~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
++..++|+||+|=++++-.+. +.-=|..|.+.|..|++|||++...-.+.++ .-+.|++.+|+
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPR-MqYHA~Sla~~gf~VdliGy~~s~p~e~l~~----------hprI~ih~m~~ 70 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPR-MQYHALSLAKLGFQVDLIGYVESIPLEELLN----------HPRIRIHGMPN 70 (444)
T ss_pred cccccceEEEEEecccCCChH-HHHHHHHHHHcCCeEEEEEecCCCChHHHhc----------CCceEEEeCCC
Confidence 445678888888777766665 5556778899999999999998864333333 12688888876
No 98
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=80.60 E-value=17 Score=34.75 Aligned_cols=51 Identities=25% Similarity=0.249 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
.++|+|+|.-... ....+.+.+++|++. ++.+.+||-|.. .+.++.+++..
T Consensus 188 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~~---~~~~~~~~~~~ 241 (367)
T cd05844 188 PPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGPL---LAALEALARAL 241 (367)
T ss_pred CcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCchH---HHHHHHHHHHc
Confidence 4578888765432 345567777777664 677777776543 25566666653
No 99
>KOG1985|consensus
Probab=80.54 E-value=37 Score=38.52 Aligned_cols=138 Identities=15% Similarity=0.212 Sum_probs=83.3
Q ss_pred eEEEEEeCCccccCCCCCCCHH-HHHHHHHHHHHHhhccCCCCCcEEEEEecCcee------------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVE------------------------ 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL-~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~------------------------ 59 (375)
-.+++||+|-+... +++ ++.+.++..=++.+ -.+|..+||+|+|-+.-+
T Consensus 296 vy~FliDVS~~a~k-----sG~L~~~~~slL~~LD~l-pgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~fl 369 (887)
T KOG1985|consen 296 VYVFLIDVSISAIK-----SGYLETVARSLLENLDAL-PGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFL 369 (887)
T ss_pred eEEEEEEeehHhhh-----hhHHHHHHHHHHHhhhcC-CCCCcceEEEEEeeceeeEEecCCCcCCCceeeecccccccc
Confidence 46789999987664 433 34444444434333 356899999999975311
Q ss_pred -----EEecCCCCHH---HHHHhhcccCC---CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC---------C
Q psy14660 60 -----VLATLTSDVG---RILSKLHQVQP---NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---------L 119 (375)
Q Consensus 60 -----vl~pLT~D~~---~Il~~L~~l~~---~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---------~ 119 (375)
+|++|-.-+. .+++.|..+-. .-+..|+.||+.|...+.. ...||+||.++.-+ +
T Consensus 370 p~pd~lLv~L~~ck~~i~~lL~~lp~~F~~~~~t~~alGpALkaaf~li~~-----~GGri~vf~s~lPnlG~G~L~~rE 444 (887)
T KOG1985|consen 370 PMPDSLLVPLKECKDLIETLLKTLPEMFQDTRSTGSALGPALKAAFNLIGS-----TGGRISVFQSTLPNLGAGKLKPRE 444 (887)
T ss_pred CCchhheeeHHHHHHHHHHHHHHHHHHHhhccCcccccCHHHHHHHHHHhh-----cCCeEEEEeccCCCCCcccccccc
Confidence 1223322222 33444443311 1246899999999977654 23699999976543 1
Q ss_pred C-------hH--------H-HHHHHHHHHhCCcEEEEEEecCCcchHHHH
Q psy14660 120 E-------ER--------E-LTKLAKRLKKEKVNVDIVSFGEEVVNTELL 153 (375)
Q Consensus 120 d-------~~--------~-l~~lakkLKk~~I~VdiIgfG~e~~n~~kL 153 (375)
+ +. + -.+++-.+.|.+|.||.--|.+.--...-|
T Consensus 445 dp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI~VDlFl~s~qY~DlAsL 494 (887)
T KOG1985|consen 445 DPNVRSSDEDSQLLSPATDFYKDLALECSKSQICVDLFLFSEQYTDLASL 494 (887)
T ss_pred ccccccchhhhhccCCCchHHHHHHHHhccCceEEEEEeecccccchhhh
Confidence 1 11 1 235788889999999999998754333333
No 100
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.94 E-value=61 Score=31.02 Aligned_cols=76 Identities=11% Similarity=0.211 Sum_probs=41.9
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC-CcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE-KVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~-~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
.++|+|+|..... +...+.++.+.+++. ++.+.++|-|.. .+.+++++...+-. .++..+..-+.+.+.+.
T Consensus 197 ~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~~----~~v~~~g~~~~~~~~~~ 269 (371)
T cd04962 197 EKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGPE---RSPAERLARELGLQ----DDVLFLGKQDHVEELLS 269 (371)
T ss_pred CeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcCCcC---HHHHHHHHHHcCCC----ceEEEecCcccHHHHHH
Confidence 5678888764432 455667777777654 577777766543 35667676664422 23333333334555444
Q ss_pred hCCcc
Q psy14660 185 SSPII 189 (375)
Q Consensus 185 sspi~ 189 (375)
.+.++
T Consensus 270 ~~d~~ 274 (371)
T cd04962 270 IADLF 274 (371)
T ss_pred hcCEE
Confidence 44443
No 101
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=76.57 E-value=31 Score=32.02 Aligned_cols=42 Identities=24% Similarity=0.248 Sum_probs=29.9
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
...+|+|+|.-.. -+...+.++++++++.++.+.++|-|...
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~ 232 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLEL 232 (359)
T ss_pred CceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhh
Confidence 3566778876543 24566778888888778999888877654
No 102
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=76.48 E-value=35 Score=31.11 Aligned_cols=53 Identities=28% Similarity=0.236 Sum_probs=32.6
Q ss_pred CccEEEEEEcCCCC-CChHHHHHHHHHHHh--CCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 105 HKMRIIAFVGSPVD-LEERELTKLAKRLKK--EKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 105 ~~~RIIvfvgSp~~-~d~~~l~~lakkLKk--~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
...++|+|+|.... -+...+.++++++++ .++.+.++|-|... ..+++++...
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~---~~~~~~~~~~ 231 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER---EALEALIKEL 231 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH---HHHHHHHHHc
Confidence 34577888886443 245567778888874 46777777766543 3444444443
No 103
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=76.20 E-value=39 Score=31.36 Aligned_cols=53 Identities=28% Similarity=0.318 Sum_probs=32.2
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
...+|+|+|.-.. -+...+.++++++++. ++.+.++|-|.. .+.++.+++..+
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~ 256 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGPE---REELEELARELG 256 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCch---HHHHHHHHHHcC
Confidence 3567778875432 2456678888888874 566666665443 345666655443
No 104
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=76.09 E-value=26 Score=32.18 Aligned_cols=51 Identities=29% Similarity=0.314 Sum_probs=31.2
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
..++|+++|.-.. .+...+.++++++++. ++.+.++|-|... +.+..+++.
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~---~~~~~~~~~ 254 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR---EALEALAAE 254 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch---HHHHHHHHh
Confidence 4567788876433 2456677888888775 5666666655432 455555543
No 105
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=74.61 E-value=10 Score=35.43 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
.|..+|...+++.+. .+||+||.|..+ +.++-+.+|+.|+..+|.|++++...
T Consensus 30 Ag~~va~~i~~~~~~---~~~v~vl~G~GN--NGGDGlv~AR~L~~~~v~V~~~~~~~ 82 (205)
T TIGR00197 30 AGKAVAQAVLQAFPL---AGHVIIFCGPGN--NGGDGFVVARHLKGFGVEVFLLKKEK 82 (205)
T ss_pred HHHHHHHHHHHHcCC---CCeEEEEECCCC--CccHHHHHHHHHHhCCCEEEEEccCC
Confidence 455566655554332 368888888765 57778899999998999999887655
No 106
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=74.54 E-value=36 Score=32.07 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=33.9
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
.++|+|+|.... ..-..+.+.++++++. ++.+.++|-|... +.+++++...+
T Consensus 188 ~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~---~~~~~~~~~~~ 242 (360)
T cd04951 188 TFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPLR---ATLERLIKALG 242 (360)
T ss_pred CEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCcH---HHHHHHHHhcC
Confidence 567888886443 2345677777777765 6778887766543 55666666554
No 107
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=73.25 E-value=25 Score=36.44 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=37.5
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCc-chHHHHHHHHHhhC
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEV-VNTELLNTFISTLN 161 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~-~n~~kL~~fi~~vn 161 (375)
...+|+|+|.... -+-..+.++++.+++. ++.+.|||-|.+. ...+.|+++++..+
T Consensus 292 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~ 351 (475)
T cd03813 292 EPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLG 351 (475)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhC
Confidence 3568888887543 2456677888777765 5777888777533 23567777777655
No 108
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=73.17 E-value=38 Score=35.47 Aligned_cols=109 Identities=22% Similarity=0.251 Sum_probs=61.6
Q ss_pred ceEEEEE-eCCccccCCCCCCCHHHHHHHHHHHHH---HhhccCCCCCcEEEEEecCc--eeEEecCCCCHHHHHHhhcc
Q psy14660 4 ESTMICV-DNSDFMRNGDFLPTRLQAQQDAVNLVC---HSKTRSNPENNVGLLAMADS--VEVLATLTSDVGRILSKLHQ 77 (375)
Q Consensus 4 EaivI~l-DnSesMrngD~~PsRL~Aq~~Av~~~v---~~k~~~NPe~~VGLVt~ag~--a~vl~pLT~D~~~Il~~L~~ 77 (375)
.|+|+|| |+|.||.. +-++.++.|+ ..|+... =.+|=||-++.. +..+..-+ .. -
T Consensus 246 ~AVmfclMDvSGSM~~---------~~KdlAkrFF~lL~~FL~~k-YenveivfIrHht~A~EVdE~d--------FF-~ 306 (423)
T COG2718 246 NAVMFCLMDVSGSMDQ---------SEKDLAKRFFFLLYLFLRRK-YENVEIVFIRHHTEAKEVDETD--------FF-Y 306 (423)
T ss_pred ceEEEEEEecCCCcch---------HHHHHHHHHHHHHHHHHhcc-cceeEEEEEeecCcceecchhh--------ce-e
Confidence 3677764 99999984 3444433332 1222222 235777776652 32222111 11 1
Q ss_pred cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC---C-ChHHHHHHHHHHH
Q psy14660 78 VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---L-EERELTKLAKRLK 132 (375)
Q Consensus 78 l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---~-d~~~l~~lakkLK 132 (375)
.+-.|+|-..+|+++++..++.|-+... =-|-.|-.|+.. . ++.+..-+.++|-
T Consensus 307 ~~esGGTivSSAl~~m~evi~ErYp~ae-WNIY~fqaSDGDN~~dDserc~~ll~~~im 364 (423)
T COG2718 307 SQESGGTIVSSALKLMLEVIKERYPPAE-WNIYAFQASDGDNWADDSERCVELLAKKLM 364 (423)
T ss_pred ecCCCCeEeHHHHHHHHHHHHhhCChhh-eeeeeeeecCCccccCCCHHHHHHHHHHHH
Confidence 2346889999999999999998755433 345555544432 2 4666666674443
No 109
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=72.55 E-value=9.7 Score=32.76 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=40.3
Q ss_pred cEEEEEEcCCCCC--ChHHHHHHHHHHHhCCcEEEEEEecCCc------------chHHHHHHHHHhhCCCC
Q psy14660 107 MRIIAFVGSPVDL--EERELTKLAKRLKKEKVNVDIVSFGEEV------------VNTELLNTFISTLNGKD 164 (375)
Q Consensus 107 ~RIIvfvgSp~~~--d~~~l~~lakkLKk~~I~VdiIgfG~e~------------~n~~kL~~fi~~vn~~~ 164 (375)
+||+++.||+... +..-+..+++.+++.|+.+.+|.+.+.. ...+.++.+.+.+...|
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD 72 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEAD 72 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSS
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCC
Confidence 5899999998642 3555666788888999999999998741 11244556666666544
No 110
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=72.30 E-value=79 Score=28.92 Aligned_cols=43 Identities=26% Similarity=0.256 Sum_probs=29.3
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHh--CCcEEEEEEecCCcc
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKK--EKVNVDIVSFGEEVV 148 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk--~~I~VdiIgfG~e~~ 148 (375)
...+|+|+|.... -....+.++++.+++ .++.+.++|-|....
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~ 232 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEEN 232 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcch
Confidence 3567788876443 245677888888886 457888888777544
No 111
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=71.31 E-value=11 Score=27.51 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|-++|......++-+.++.+.|.+.||+|+.|..|.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788777778888899999999999999998765
No 112
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=71.19 E-value=14 Score=35.82 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhccCC-----CC-CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 88 TGIRIAHLALKHRQG-----KN-HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 88 ~gI~vA~laLKhr~~-----k~-~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
.|..+|...+++... +. ...||+||.|..+ +.++-+.+|+.|...|+.|.|+-
T Consensus 36 AG~ava~~i~~~~~~~~~~~~~~~~~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 36 AGLSVAEAVYEVADGEKASNPPGRHPRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred HHHHHHHHHHHHhccccccCccCCCCeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEE
Confidence 455566655443321 11 1258888888765 67888999999999999999887
No 113
>PRK09271 flavodoxin; Provisional
Probab=68.39 E-value=17 Score=32.35 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
++|+|+.+|-.+.+++-...+++.|+..++.|.+..+.
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~ 38 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETD 38 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecc
Confidence 36778888866666777888899999999888665554
No 114
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=67.62 E-value=73 Score=28.97 Aligned_cols=51 Identities=29% Similarity=0.315 Sum_probs=29.9
Q ss_pred ccEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 106 KMRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 106 ~~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
....|+|+|.... -+-..+.++++.+++. ++.+.++|-|. ....+..+++.
T Consensus 198 ~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~---~~~~~~~~~~~ 251 (374)
T cd03801 198 DEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP---LREELEALAAE 251 (374)
T ss_pred CCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH---HHHHHHHHHHH
Confidence 3567788876543 2345677777777776 56666666322 23455555444
No 115
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=67.43 E-value=16 Score=35.47 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSG 167 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~ 167 (375)
+|..+....|++... ...| |.|+|+ ++..+.+++++|++.- .+.|+|.=..-.+.+--+++++.+|. .+
T Consensus 89 ~G~dl~~~ll~~~~~--~~~~-v~llG~----~~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~i~~~I~~---s~ 157 (243)
T PRK03692 89 AGADLWEALMARAGK--EGTP-VFLVGG----KPEVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQALFERIHA---SG 157 (243)
T ss_pred ChHHHHHHHHHHHHh--cCCe-EEEECC----CHHHHHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHHHHHHHHh---cC
Confidence 355555554544322 1134 567776 6888999999998874 67777753322223334456666764 35
Q ss_pred eeEEEecCCC
Q psy14660 168 SHMVTVAVGP 177 (375)
Q Consensus 168 Sh~v~vp~g~ 177 (375)
-++|.|-=|.
T Consensus 158 ~dil~VglG~ 167 (243)
T PRK03692 158 AKIVTVAMGS 167 (243)
T ss_pred CCEEEEECCC
Confidence 7999997774
No 116
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=67.40 E-value=96 Score=29.33 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=60.6
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhH
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDA 182 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~ 182 (375)
...+|+|+|..... .-..+.+++++|++. ++.+.+||=|.. .+.++++++..+- ..++..+.....+.+.
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~---~~~~~~~~~~~~~----~~~v~~~g~~~~~~~~ 263 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGEL---EEEIKKKVKELGL----EDKVIFLGVRNDVPEL 263 (358)
T ss_pred CCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCch---HHHHHHHHHhcCC----CCcEEEecccCCHHHH
Confidence 35677788764422 344577778888776 455555553332 3456656554332 1222222222223333
Q ss_pred hhh------------------------CCcccCCCCCCCCCCCCCccCCCCCCC-HHHHHHHHhcHHHHHHHHHHHHH
Q psy14660 183 LIS------------------------SPIIQGEDGAGGAPGSSYEFGVDPNED-PELALALRVSMEEQRARQESEAR 235 (375)
Q Consensus 183 l~s------------------------spi~~~~~~~~~~~~~~~~fgvdp~~D-PELa~Alr~Sleee~~rq~~~~~ 235 (375)
+-. .||+..+.|+...--.+-..++.++.| -+||-||+--++....|+....+
T Consensus 264 ~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 264 LQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred HHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhh
Confidence 333 333332222110000000123456666 78999999888777666544433
No 117
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=67.35 E-value=66 Score=30.41 Aligned_cols=53 Identities=21% Similarity=0.140 Sum_probs=32.3
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHh--CCcEEEEEEecCCcch-HHHHHHHHHh
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKK--EKVNVDIVSFGEEVVN-TELLNTFIST 159 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk--~~I~VdiIgfG~e~~n-~~kL~~fi~~ 159 (375)
..+|+|+|.-.. -....+.+++++|++ .++.+.+||-|..... .+.+.+.+..
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~ 241 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKR 241 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHH
Confidence 466777765332 245668888888888 4677777777764322 2334444444
No 118
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=67.34 E-value=78 Score=34.48 Aligned_cols=55 Identities=13% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
.|..+|....++.+. ...++|+||.|.++ +.++-..+|+.|+..|+.|.|+-.+.
T Consensus 118 AG~avA~~I~~~~~~-~~~~~VlVlcGpGN--NGGDGLVaAR~L~~~G~~V~V~~~~~ 172 (544)
T PLN02918 118 AGLSVAASIAEVYKP-GEYSRVLAICGPGN--NGGDGLVAARHLHHFGYKPFVCYPKR 172 (544)
T ss_pred HHHHHHHHHHHhccc-ccCCEEEEEECCCc--CHHHHHHHHHHHHHCCCceEEEEcCC
Confidence 556666655554331 11257888887765 68889999999999999999877553
No 119
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=67.03 E-value=14 Score=31.25 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
.+..-++.+...++.+.. ..|||++|+ .++..++++|+..|++|.++++ ...-.+.|...
T Consensus 79 ~D~~l~~d~~~~~~~~~~-----d~ivLvSgD------~Df~~~v~~l~~~g~~V~v~~~--~~~~s~~L~~~ 138 (146)
T PF01936_consen 79 VDVALAVDILELAYENPP-----DTIVLVSGD------SDFAPLVRKLRERGKRVIVVGA--EDSASEALRSA 138 (146)
T ss_dssp -HHHHHHHHHHHG--GG------SEEEEE---------GGGHHHHHHHHHH--EEEEEE---GGGS-HHHHHH
T ss_pred cHHHHHHHHHHHhhccCC-----CEEEEEECc------HHHHHHHHHHHHcCCEEEEEEe--CCCCCHHHHHh
Confidence 455555555555444432 466666543 5688999999999999999996 22234555544
No 120
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=66.93 E-value=84 Score=28.92 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=25.9
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCc
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEV 147 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~ 147 (375)
..+|+|+|..... ....+.++.+.+++. ++.+.++|-|...
T Consensus 193 ~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~ 236 (365)
T cd03807 193 TFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPDR 236 (365)
T ss_pred CeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcch
Confidence 4567788765432 355677777777764 5667676666543
No 121
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=66.60 E-value=25 Score=31.88 Aligned_cols=76 Identities=17% Similarity=0.303 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCC--chhhHh--
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGP--HLSDAL-- 183 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~--~Lsd~l-- 183 (375)
+|+|+.||. .|-....++.+.|++.||.+++--.+.. ...++|.+|++..+.. +...+++-.|- +|.=++
T Consensus 2 ~V~Ii~gs~--SD~~~~~~a~~~L~~~gi~~~~~V~saH-R~p~~l~~~~~~~~~~---~~~viIa~AG~~a~Lpgvva~ 75 (150)
T PF00731_consen 2 KVAIIMGST--SDLPIAEEAAKTLEEFGIPYEVRVASAH-RTPERLLEFVKEYEAR---GADVIIAVAGMSAALPGVVAS 75 (150)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTT-EEEEEE--TT-TSHHHHHHHHHHTTTT---TESEEEEEEESS--HHHHHHH
T ss_pred eEEEEeCCH--HHHHHHHHHHHHHHHcCCCEEEEEEecc-CCHHHHHHHHHHhccC---CCEEEEEECCCcccchhhhee
Confidence 678888884 3788889999999999999986444444 5678899999987752 45565555553 454433
Q ss_pred -hhCCcc
Q psy14660 184 -ISSPII 189 (375)
Q Consensus 184 -~sspi~ 189 (375)
-..|+|
T Consensus 76 ~t~~PVI 82 (150)
T PF00731_consen 76 LTTLPVI 82 (150)
T ss_dssp HSSS-EE
T ss_pred ccCCCEE
Confidence 244555
No 122
>PF10221 DUF2151: Cell cycle and development regulator; InterPro: IPR019355 This entry represents the cell cycle regulator Mat89b, which plays an evolutionarily conserved role as a crucial regulator of both cell cycle and development []. Mat89Bb is a PNG kinase substrate that is essential for S-M cycles of early Drosophila embryogenesis, Xenopus embryonic cell cycles and morphogenesis, and cell division in cultured mammalian cells.
Probab=66.37 E-value=43 Score=37.48 Aligned_cols=112 Identities=18% Similarity=0.306 Sum_probs=78.9
Q ss_pred EEEEEeCCccccC------------------CCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCC
Q psy14660 6 TMICVDNSDFMRN------------------GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTS 66 (375)
Q Consensus 6 ivI~lDnSesMrn------------------gD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~ 66 (375)
||||||=|.+|-. .=+..|=|.+..+|+-.+|+=-++.-|....=-+++++ .+..+-+-+.
T Consensus 8 TVfVLDh~p~f~~ss~~~i~~d~~~~~~~~~~~i~KSLWTc~vEa~~EYcRIV~DlFP~~k~IrfivsD~~a~~lntW~~ 87 (695)
T PF10221_consen 8 TVFVLDHSPYFAESSNQPIDFDIVKKSRQQKAPISKSLWTCAVEASIEYCRIVWDLFPDGKLIRFIVSDTAAHILNTWST 87 (695)
T ss_pred EEEEEcCCchhhhhccCcEEEeeecCCCCCcCcccchHHHHHHHHHHHHHHHHhhccCCCceEEEEEEccccccccCcCh
Confidence 7899999988742 11235779999999999999999999998874444445 4777766443
Q ss_pred ---CHHHHHHhhcccCCC-------CCccHHHHHHHHHHHhhccCC----------------CCCccEEEEEEcCCC
Q psy14660 67 ---DVGRILSKLHQVQPN-------GNINFMTGIRIAHLALKHRQG----------------KNHKMRIIAFVGSPV 117 (375)
Q Consensus 67 ---D~~~Il~~L~~l~~~-------G~~~l~~gI~vA~laLKhr~~----------------k~~~~RIIvfvgSp~ 117 (375)
....|+..|-.+.+- +.+++..||.+|..||-.... ...++|||+|+.--.
T Consensus 88 ~~Qsl~~L~~~la~vG~P~~~~~~~~d~svi~GL~~AIEaL~e~td~Q~e~~~~~~~~~~~~~~N~GrIIciT~~k~ 164 (695)
T PF10221_consen 88 SQQSLSHLMNALATVGPPPRSDPENSDYSVIHGLRMAIEALAEPTDSQKEQRASRVNEELKKVENRGRIICITSAKS 164 (695)
T ss_pred hhccHHHHHHHHHhcCCCCCCCcccccchhHHHHHHHHHHHhcCCHHHHHHhhcccchhhhhccCCccEEEEEeecC
Confidence 556667777776322 345899999999987754311 125689999985543
No 123
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=66.30 E-value=7.9 Score=37.73 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=71.0
Q ss_pred EEEEeCCccccCCC----CCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCcee---EE-----ecCCCCHHHH---
Q psy14660 7 MICVDNSDFMRNGD----FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVE---VL-----ATLTSDVGRI--- 71 (375)
Q Consensus 7 vI~lDnSesMrngD----~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~---vl-----~pLT~D~~~I--- 71 (375)
-|+|.+|.+..+++ +.|.++..-..-++.++.. ..+||||+=+|+.. .. -.-+.|+=-+
T Consensus 7 rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~------g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaT 80 (238)
T COG0528 7 RILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDL------GVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLAT 80 (238)
T ss_pred EEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhc------CcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHH
Confidence 47889999999996 5788998887777777642 56899998877421 11 1112222111
Q ss_pred -------HHhhcccCCCCCccHHHHHHHH--------HHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCc
Q psy14660 72 -------LSKLHQVQPNGNINFMTGIRIA--------HLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKV 136 (375)
Q Consensus 72 -------l~~L~~l~~~G~~~l~~gI~vA--------~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I 136 (375)
..+|+++ +=.+.++++|.+- ..|.+|.. +.|||||-|+ +..|..-...+..|+..-+
T Consensus 81 vmNal~L~~aL~~~--~~~~~v~sai~~~~~~e~~~~~~A~~~l~----~grVvIf~gG--tg~P~fTTDt~AALrA~ei 152 (238)
T COG0528 81 VMNALALQDALERL--GVDTRVQSAIAMPQVAEPYSRREAIRHLE----KGRVVIFGGG--TGNPGFTTDTAAALRAEEI 152 (238)
T ss_pred HHHHHHHHHHHHhc--CCcceecccccCccccCccCHHHHHHHHH----cCCEEEEeCC--CCCCCCchHHHHHHHHHHh
Confidence 1111211 0122333333321 12333432 2688888764 2245555555566666777
Q ss_pred EEEEEEecCC
Q psy14660 137 NVDIVSFGEE 146 (375)
Q Consensus 137 ~VdiIgfG~e 146 (375)
..|+|-.++.
T Consensus 153 ~ad~ll~atn 162 (238)
T COG0528 153 EADVLLKATN 162 (238)
T ss_pred CCcEEEEecc
Confidence 7788877773
No 124
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=65.14 E-value=60 Score=29.84 Aligned_cols=52 Identities=10% Similarity=0.266 Sum_probs=31.5
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
+|.++..-+|.+--++... +-..+|+++| ..+...++.+|+..|++|.+||+
T Consensus 86 kG~~Dv~laIDame~~~~~------~iD~~vLvSg-----D~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 86 AGDVDVRMAVEAMELIYNP------NIDAVALVTR-----DADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred cCcccHHHHHHHHHHhccC------CCCEEEEEec-----cHhHHHHHHHHHHCCCEEEEEeC
Confidence 4666665555543332211 1234444443 45688899999999998877775
No 125
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.09 E-value=19 Score=26.20 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|-++|.+....++-+.++.+.|.+.||+|+.|+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5667788877777778889999999999999998764
No 126
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=63.84 E-value=30 Score=31.84 Aligned_cols=62 Identities=16% Similarity=0.307 Sum_probs=45.6
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHH
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLN 154 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~ 154 (375)
..|..+...++.+..++.+. +-.+||+|.|+ .++.-+.+.++..|.+|.+++++. ....-|.
T Consensus 90 ~k~~vDv~la~D~~~l~~~~-----~~D~ivl~SgD------~DF~p~v~~~~~~G~rv~v~~~~~--~~s~~L~ 151 (181)
T COG1432 90 TKGDVDVELAVDAMELADKK-----NVDTIVLFSGD------GDFIPLVEAARDKGKRVEVAGIEP--MTSSDLR 151 (181)
T ss_pred cccCcchhhHHHHHHhhccc-----CCCEEEEEcCC------ccHHHHHHHHHHcCCEEEEEecCC--cCHHHHH
Confidence 45788888888888876643 23688888764 335566888899999999999998 3345554
No 127
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=63.76 E-value=28 Score=29.83 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=48.2
Q ss_pred CHHHHHHhhcccC------C-------CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHh
Q psy14660 67 DVGRILSKLHQVQ------P-------NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKK 133 (375)
Q Consensus 67 D~~~Il~~L~~l~------~-------~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk 133 (375)
....+...|+... + +.+.++.-++.+..++..+. -..||+++|+ .++..++++|++
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~-----~d~ivLvSgD------~Df~~~i~~lr~ 121 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRR-----IDTIVLVSGD------SDFVPLVERLRE 121 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcC-----CCEEEEEECC------ccHHHHHHHHHH
Confidence 4556666666541 1 13466666666666655442 2466666653 368889999999
Q ss_pred CCcEEEEEEecCCcchHHHHHH
Q psy14660 134 EKVNVDIVSFGEEVVNTELLNT 155 (375)
Q Consensus 134 ~~I~VdiIgfG~e~~n~~kL~~ 155 (375)
.|++|-++++... ....|..
T Consensus 122 ~G~~V~v~~~~~~--~s~~L~~ 141 (149)
T cd06167 122 LGKRVIVVGFEAK--TSRELRK 141 (149)
T ss_pred cCCEEEEEccCcc--ChHHHHH
Confidence 9999999999732 2345543
No 128
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=63.06 E-value=29 Score=36.11 Aligned_cols=122 Identities=12% Similarity=0.158 Sum_probs=61.8
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecC--CCCHHHHHHhhccc--CCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL--TSDVGRILSKLHQV--QPN 81 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pL--T~D~~~Il~~L~~l--~~~ 81 (375)
+|+++|+|.||.- | +|+- =.|+++..++.+..+ +..|+..-.-++.. -.|....+..+..- .=.
T Consensus 221 lvvL~DVSGSm~~--y--s~~~------L~l~hAl~q~~~R~~--~F~F~TRLt~vT~~l~~rD~~~Al~~~~a~v~dw~ 288 (395)
T COG3552 221 LVVLCDVSGSMSG--Y--SRIF------LHLLHALRQQRSRVH--VFLFGTRLTRVTHMLRERDLEDALRRLSAQVKDWD 288 (395)
T ss_pred eEEEEecccchhh--h--HHHH------HHHHHHHHhccccee--EEEeechHHHHHHHhccCCHHHHHHHHHhhccccc
Confidence 6889999999962 2 3332 234555556655555 66676531111111 23444444333322 223
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEE
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIV 141 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiI 141 (375)
|++.+++.+.-=. .--|+..-.++.-|||+ ++..+ ++...+..+...|.+.--++.++
T Consensus 289 ggTrig~tl~aF~-~~~~~~~L~~gA~Vlil-sDg~drd~~~~l~~~~~rl~rrarrlvwL 347 (395)
T COG3552 289 GGTRIGNTLAAFL-RRWHGNVLSGGAVVLIL-SDGLDRDDIPELVTAMARLRRRARRLVWL 347 (395)
T ss_pred CCcchhHHHHHHH-ccccccccCCceEEEEE-ecccccCCchHHHHHHHHHHHhhcceeec
Confidence 8888888765222 12233322333344444 44443 45666777776666544444333
No 129
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.49 E-value=20 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|-++|......++-+.++.+.|.+.||+|+.|.-|.
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5677788877778888899999999999999998765
No 130
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.83 E-value=29 Score=32.15 Aligned_cols=62 Identities=26% Similarity=0.312 Sum_probs=41.6
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC-cchHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE-VVNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e-~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
++|+|+|-....-.-.+.|+|..++.++-+|-+|+.-+- ..-.+.|+.|.+.++ -.+..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~------vp~~~~~~ 64 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG------VPFYVART 64 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT------EEEEESST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc------cccchhhc
Confidence 678888754333355688899888888999988887653 234688888888865 45555543
No 131
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.98 E-value=23 Score=25.81 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|-++|.+....++-+.++...|++.||.|+.|+.|.
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667788777778888899999999999999998865
No 132
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=60.69 E-value=1.9e+02 Score=30.55 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred ceEEEE-EeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc--eeEEecCCCCHHHHHHhhcccCC
Q psy14660 4 ESTMIC-VDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS--VEVLATLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 4 EaivI~-lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~--a~vl~pLT~D~~~Il~~L~~l~~ 80 (375)
.||||| .|+|.||.. .+-..++... .++..|+..+.+ +|=++-++.. |.-+. -. ..-...-
T Consensus 246 ~AVv~~lmDvSGSM~~-----~~K~lak~ff-~~l~~fL~~~Y~-~Ve~vfI~H~t~A~EVd-----Ee----~FF~~~e 309 (421)
T PF04285_consen 246 NAVVFCLMDVSGSMGE-----FKKDLAKRFF-FWLYLFLRRKYE-NVEIVFIRHHTEAKEVD-----EE----EFFHSRE 309 (421)
T ss_pred cEEEEEEEeCCCCCch-----HHHHHHHHHH-HHHHHHHHhccC-ceEEEEEeecCceEEec-----HH----HhcccCC
Confidence 466766 599999985 2222222211 122344555666 3777777652 32222 11 1122345
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC---CChHHHHHHHH-HH-HhCCc
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---LEERELTKLAK-RL-KKEKV 136 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---~d~~~l~~lak-kL-Kk~~I 136 (375)
+|+|-+..|+++|...+..|-.... =-|=+|-.|+.. .|.....++.+ +| ...+.
T Consensus 310 sGGT~vSSA~~l~~~ii~erypp~~-wNiY~~~~SDGDN~~~D~~~~~~ll~~~llp~~~~ 369 (421)
T PF04285_consen 310 SGGTRVSSAYELALEIIEERYPPSD-WNIYVFHASDGDNWSSDNERCVELLEEELLPVCNY 369 (421)
T ss_pred CCCeEehHHHHHHHHHHHhhCChhh-ceeeeEEcccCccccCCCHHHHHHHHHHHHHhcCe
Confidence 6889999999999998887643332 245555544432 34444444433 43 44343
No 133
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=60.39 E-value=91 Score=29.11 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhCC--cEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKEK--VNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~~--I~VdiIgfG~e 146 (375)
..+|+|+|..... +...+.++++++++.+ +.+.++|-+..
T Consensus 195 ~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~ 237 (365)
T cd03809 195 RPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGW 237 (365)
T ss_pred CCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCcc
Confidence 4677888765432 4567788888888886 67777765543
No 134
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=60.00 E-value=1.1e+02 Score=31.22 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=34.7
Q ss_pred EEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 108 RIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 108 RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
..|+|+|..... +-..+.+.+++|++. ++.+.+||-|.. .+.|++++...+
T Consensus 223 ~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~---~~~l~~~~~~~~ 276 (406)
T PRK15427 223 LEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW---ERRLRTLIEQYQ 276 (406)
T ss_pred eEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh---HHHHHHHHHHcC
Confidence 457788765432 455677888888765 477888887764 367777777654
No 135
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.81 E-value=90 Score=29.35 Aligned_cols=48 Identities=23% Similarity=0.172 Sum_probs=29.4
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
..+|+|+|.-... +...+.+++++++ ++.+.++|=|... ..++++++.
T Consensus 191 ~~~i~~~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~~~---~~~~~~~~~ 239 (357)
T cd03795 191 RPFFLFVGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGPLE---AELEALAAA 239 (357)
T ss_pred CcEEEEecccccccCHHHHHHHHHhcc--CcEEEEEeCChhH---HHHHHHHHh
Confidence 4677888764321 3445666666665 6888888876532 455555544
No 136
>PRK10565 putative carbohydrate kinase; Provisional
Probab=56.26 E-value=56 Score=34.94 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=32.6
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.||+||.|..+ +.++-+.+|+.|...|+.|.|+.++...
T Consensus 61 ~~v~vl~G~GN--NGGDG~v~AR~L~~~G~~V~v~~~~~~~ 99 (508)
T PRK10565 61 RHWLVLCGHGN--NGGDGYVVARLAQAAGIDVTLLAQESDK 99 (508)
T ss_pred CeEEEEEcCCC--chHHHHHHHHHHHHCCCceEEEEECCcc
Confidence 57888888765 5777899999999999999999998643
No 137
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=55.13 E-value=1.2e+02 Score=28.66 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcE--EEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecC-C----C-ch
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVN--VDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAV-G----P-HL 179 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~--VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~-g----~-~L 179 (375)
-.++++|..... ..-...+.+.+++.++. |.++|+ .. .+..+.. .++++..|. . + .+
T Consensus 217 ~~l~ivG~~~~~-~~~~~~~~~~~~~~~~~~~v~~~g~--~~----~~~~~l~--------~ad~~i~ps~~~e~~~~~l 281 (355)
T cd03819 217 VHLLIVGDAQGR-RFYYAELLELIKRLGLQDRVTFVGH--CS----DMPAAYA--------LADIVVSASTEPEAFGRTA 281 (355)
T ss_pred eEEEEEECCccc-chHHHHHHHHHHHcCCcceEEEcCC--cc----cHHHHHH--------hCCEEEecCCCCCCCchHH
Confidence 346666764321 11122233345555553 555565 22 2222322 367777776 1 1 24
Q ss_pred hhHh-hhCCcccCCCCCCC--CCCCCCccCCCCCCCHHHHHHHHh
Q psy14660 180 SDAL-ISSPIIQGEDGAGG--APGSSYEFGVDPNEDPELALALRV 221 (375)
Q Consensus 180 sd~l-~sspi~~~~~~~~~--~~~~~~~fgvdp~~DPELa~Alr~ 221 (375)
.+.+ ...|++.-+.++.. ...+...+-++++...+|+-+|+.
T Consensus 282 ~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~ 326 (355)
T cd03819 282 VEAQAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQ 326 (355)
T ss_pred HHHHhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHH
Confidence 4444 45677764433211 111112355788888899999943
No 138
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=54.81 E-value=54 Score=35.27 Aligned_cols=134 Identities=18% Similarity=0.296 Sum_probs=67.6
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcE-EEEE---ecCce---eEEecCCCCHHHHHHhhccc
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNV-GLLA---MADSV---EVLATLTSDVGRILSKLHQV 78 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~V-GLVt---~ag~a---~vl~pLT~D~~~Il~~L~~l 78 (375)
+-++||||.|||-. | ++.+..++..|....-+-+-.+-| |.-| ++|.. -+----+..++.+..-.|.+
T Consensus 416 VtlviDnSGSMrGR---p--ItvAatcAdilArtLeRcgVk~eIlGFTT~awkGg~sre~wlk~Gkp~~pgrlndlrhii 490 (620)
T COG4547 416 VTLVIDNSGSMRGR---P--ITVAATCADILARTLERCGVKVEILGFTTKAWKGGQSRETWLKRGKPAFPGRLNDLRHII 490 (620)
T ss_pred heeeeccCCCcCCc---c--eehhHHHHHHHHHHHHHcCCceEEeeeeeccccCCccHHHHHhcCCCCCchhhhhHHHHH
Confidence 45799999999973 3 335555666676665444433333 4444 33311 11122344555555555544
Q ss_pred CCC------------------CC--ccH-HHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC------------hHHHH
Q psy14660 79 QPN------------------GN--INF-MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE------------ERELT 125 (375)
Q Consensus 79 ~~~------------------G~--~~l-~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d------------~~~l~ 125 (375)
.-+ |- -++ +.+|--|+.-|-.|+. .+||+++++++-.++ +..|.
T Consensus 491 yksAdaPwrRARrnlGlmmreglLkeNiDGEal~wah~rl~gRpE---qrkIlmmiSDGAPvddstlsvnpGnylerHLR 567 (620)
T COG4547 491 YKSADAPWRRARRNLGLMMREGLLKENIDGEALMWAHQRLIGRPE---QRKILMMISDGAPVDDSTLSVNPGNYLERHLR 567 (620)
T ss_pred HhccCCHHHHHHhhcchhhhcchhhccCChHHHHHHHHHHhcChh---hceEEEEecCCCcccccccccCCchHHHHHHH
Confidence 100 10 011 3455566655555553 256777764433322 23455
Q ss_pred HHHHHHHhC-CcEEEEEEecCCc
Q psy14660 126 KLAKRLKKE-KVNVDIVSFGEEV 147 (375)
Q Consensus 126 ~lakkLKk~-~I~VdiIgfG~e~ 147 (375)
..++..... -|-+-.||+|..+
T Consensus 568 aVieeIEtrSpveLlAIGighDv 590 (620)
T COG4547 568 AVIEEIETRSPVELLAIGIGHDV 590 (620)
T ss_pred HHHHHHhcCCchhheeeeccccc
Confidence 555554433 3666666666654
No 139
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=54.22 E-value=59 Score=30.59 Aligned_cols=52 Identities=27% Similarity=0.229 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
...|+|+|.... -+...+.+.++++++. ++.+.++|-|.. .+.+..++...+
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~---~~~~~~~~~~~~ 233 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL---RDELEALIAELG 233 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc---HHHHHHHHHHcC
Confidence 456778876432 2456678888888886 677777776654 355666666654
No 140
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=53.52 E-value=1.5e+02 Score=32.31 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=50.7
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCC--chhhH
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGP--HLSDA 182 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~--~Lsd~ 182 (375)
...++.|+.||. .|-..+.+.++.|++.||..++ ++...-...+++.+|+.....+ +...+++-.|- +|.=+
T Consensus 409 ~~~~v~i~~gs~--sd~~~~~~~~~~l~~~g~~~~~-~v~sahr~~~~~~~~~~~~~~~---~~~v~i~~ag~~~~l~~~ 482 (577)
T PLN02948 409 GTPLVGIIMGSD--SDLPTMKDAAEILDSFGVPYEV-TIVSAHRTPERMFSYARSAHSR---GLQVIIAGAGGAAHLPGM 482 (577)
T ss_pred CCCeEEEEECch--hhHHHHHHHHHHHHHcCCCeEE-EEECCccCHHHHHHHHHHHHHC---CCCEEEEEcCccccchHH
Confidence 346788998984 4888899999999999999874 4444446678899898776533 23455544543 45444
Q ss_pred h
Q psy14660 183 L 183 (375)
Q Consensus 183 l 183 (375)
+
T Consensus 483 ~ 483 (577)
T PLN02948 483 V 483 (577)
T ss_pred H
Confidence 4
No 141
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=53.11 E-value=67 Score=29.67 Aligned_cols=55 Identities=20% Similarity=0.148 Sum_probs=33.0
Q ss_pred CccEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 105 HKMRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 105 ~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
.++.+|+|+|.... -+...+.+++++|++. ++.+.++|-|... ....++.+++..
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~ 258 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGG-YRAELKQIAAAL 258 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcc-hHHHHHHHHHhc
Confidence 34567888876432 2455677888888884 6777777765443 234445444443
No 142
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=52.82 E-value=52 Score=30.33 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=46.1
Q ss_pred HHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCe
Q psy14660 89 GIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGS 168 (375)
Q Consensus 89 gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~S 168 (375)
|..+....+++...+. .| |.|+|+ .+..+.+++++|++.-=.+.|+|. ..-...+--+++++.+|. .+-
T Consensus 33 G~dl~~~l~~~~~~~~--~~-vfllG~----~~~v~~~~~~~l~~~yP~l~i~g~-~g~f~~~~~~~i~~~I~~---s~~ 101 (177)
T TIGR00696 33 GPDLMEELCQRAGKEK--LP-IFLYGG----KPDVLQQLKVKLIKEYPKLKIVGA-FGPLEPEERKAALAKIAR---SGA 101 (177)
T ss_pred hHHHHHHHHHHHHHcC--Ce-EEEECC----CHHHHHHHHHHHHHHCCCCEEEEE-CCCCChHHHHHHHHHHHH---cCC
Confidence 4555555454432111 24 566676 688899999999998555566665 222222233445566664 257
Q ss_pred eEEEecCCC
Q psy14660 169 HMVTVAVGP 177 (375)
Q Consensus 169 h~v~vp~g~ 177 (375)
++|.|-=|.
T Consensus 102 dil~VglG~ 110 (177)
T TIGR00696 102 GIVFVGLGC 110 (177)
T ss_pred CEEEEEcCC
Confidence 888887664
No 143
>PRK06756 flavodoxin; Provisional
Probab=52.65 E-value=24 Score=30.55 Aligned_cols=39 Identities=8% Similarity=0.229 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
++|+|+.+|..+.++.-...+++.+++.|+.|+++.+.+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMD 40 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhc
Confidence 477888888776677778888999999999999887754
No 144
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=52.41 E-value=2e+02 Score=26.80 Aligned_cols=40 Identities=10% Similarity=-0.050 Sum_probs=26.4
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhC--CcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKE--KVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e 146 (375)
..+|+|+|.... .+...+...++++++. ++.+.++|-|..
T Consensus 185 ~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~ 227 (366)
T cd03822 185 RPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHP 227 (366)
T ss_pred CeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCcc
Confidence 567888886543 2456677888888875 566666665543
No 145
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=52.15 E-value=40 Score=36.90 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=96.7
Q ss_pred hccCCCCCcEEEEEe----cCc-eeEE--ecCCCCHHHHHHhhccc----CCCCCcc-----HHHHHHHHHHHhhccCCC
Q psy14660 40 KTRSNPENNVGLLAM----ADS-VEVL--ATLTSDVGRILSKLHQV----QPNGNIN-----FMTGIRIAHLALKHRQGK 103 (375)
Q Consensus 40 k~~~NPe~~VGLVt~----ag~-a~vl--~pLT~D~~~Il~~L~~l----~~~G~~~-----l~~gI~vA~laLKhr~~k 103 (375)
|.-.||..+|=|.|= -|. |-++ .|||+=.-.|..+.-+. ...|+-. |.++|.--...|+ ++.
T Consensus 13 klvk~~~Gr~~v~TkfsrLtGr~PillaGMTPtTVdp~ivAAaAnAGhwaELAGGGq~t~e~~~~~i~ql~~~le--pG~ 90 (717)
T COG4981 13 KLVKLPDGRVKVSTKFSRLTGRSPILLAGMTPTTVDPDIVAAAANAGHWAELAGGGQVTEEIFTNAIEQLVSLLE--PGR 90 (717)
T ss_pred ceEecCCCcEEEeechhhhcCCCCeeecCCCCCcCCHHHHHHHhcCCceeeecCCcccCHHHHHHHHHHHHhccC--CCc
Confidence 455788888888773 344 5554 45565555666665443 4434332 3445443222232 232
Q ss_pred CCccEEEEEEcCCCCCC-hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCc--h-
Q psy14660 104 NHKMRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH--L- 179 (375)
Q Consensus 104 ~~~~RIIvfvgSp~~~d-~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~--L- 179 (375)
+. +-=.+|+ .|---. .---..+.++++.+|-+|+-|-++......+.-.++|+.++. +|..||...||.. +
T Consensus 91 t~-qfN~ifl-dpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~---~G~~yv~fKPGtIeqI~ 165 (717)
T COG4981 91 TA-QFNSIFL-DPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGD---DGFPYVAFKPGTIEQIR 165 (717)
T ss_pred cc-eeeEEEe-chHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhh---cCceeEEecCCcHHHHH
Confidence 22 3445666 232100 011235788999999999999999888777888889999984 4799999999972 3
Q ss_pred -----hhHhhhCCcccCCCCCCCCCCCCCccCCCCCCCHHHHH
Q psy14660 180 -----SDALISSPIIQGEDGAGGAPGSSYEFGVDPNEDPELAL 217 (375)
Q Consensus 180 -----sd~l~sspi~~~~~~~~~~~~~~~~fgvdp~~DPELa~ 217 (375)
.+..=..||+.-=.||.+||--.|| | -.||=|++
T Consensus 166 svi~IAka~P~~pIilq~egGraGGHHSwe---D-ld~llL~t 204 (717)
T COG4981 166 SVIRIAKANPTFPIILQWEGGRAGGHHSWE---D-LDDLLLAT 204 (717)
T ss_pred HHHHHHhcCCCCceEEEEecCccCCccchh---h-cccHHHHH
Confidence 3334456776533333223333443 2 23555554
No 146
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=51.53 E-value=88 Score=28.92 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCCc--------chHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 108 RIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEEV--------VNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 108 RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e~--------~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
+|++|.|||.... ..-+..+++.++..++.|.+|.+..-. ...+.++++++.+...| .+|.+-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD----~iIi~tP 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD----GLIVATP 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC----EEEEECC
Confidence 6777777776432 333444556666677777777665311 01234455555555433 4555544
No 147
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=51.19 E-value=1.2e+02 Score=25.79 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=51.0
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCCc-chHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEV-VNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e~-~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
..+|+-+|-.... ++..+..+.+.|.+.|++--+|..|... +..+.+.++++.. +-=++.+|..-.++|++-
T Consensus 43 gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~------~lPli~ip~~~~f~~I~~ 116 (123)
T PF07905_consen 43 GELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADEL------GLPLIEIPWEVPFSDITR 116 (123)
T ss_pred CeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHc------CCCEEEeCCCCCHHHHHH
Confidence 4555555655555 5777999999999999998888888433 3345555555542 467899999877888764
No 148
>PRK05325 hypothetical protein; Provisional
Probab=51.04 E-value=1.8e+02 Score=30.65 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=72.2
Q ss_pred ceEEEE-EeCCccccCCCCCCCHHHHHHHHHHHH---HHhhccCCCCCcEEEEEecCc--eeEEecCCCCHHHHHHhhcc
Q psy14660 4 ESTMIC-VDNSDFMRNGDFLPTRLQAQQDAVNLV---CHSKTRSNPENNVGLLAMADS--VEVLATLTSDVGRILSKLHQ 77 (375)
Q Consensus 4 EaivI~-lDnSesMrngD~~PsRL~Aq~~Av~~~---v~~k~~~NPe~~VGLVt~ag~--a~vl~pLT~D~~~Il~~L~~ 77 (375)
.|+||| .|+|.||.. ..|+.++.| +-.|+..+. .+|=++-++.. |.-+.. .. .. .
T Consensus 222 ~AVmfclMDvSGSM~~---------~~K~lakrff~lly~fL~r~Y-~~vEvvFI~H~t~AkEVdE-----ee---FF-~ 282 (401)
T PRK05325 222 QAVMFCLMDVSGSMDE---------AEKDLAKRFFFLLYLFLRRKY-ENVEVVFIRHHTEAKEVDE-----EE---FF-Y 282 (401)
T ss_pred cEEEEEEEeCCCCCch---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCceeEcCH-----HH---cc-c
Confidence 467776 599999985 333333322 223334444 57777777752 332222 11 11 2
Q ss_pred cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC---CC-hHHHHHHHHHH-HhCCcEEEEEEecCCc----c
Q psy14660 78 VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---LE-ERELTKLAKRL-KKEKVNVDIVSFGEEV----V 148 (375)
Q Consensus 78 l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---~d-~~~l~~lakkL-Kk~~I~VdiIgfG~e~----~ 148 (375)
..-.|+|-...|+++|...+..|-.... =-|=+|=.|+.. .| +.+..-+-++| ... ...|+|+-. .
T Consensus 283 ~~esGGT~vSSA~~l~~eIi~~rYpp~~-wNIY~f~aSDGDNw~~D~~~~~~ll~~~llp~~----~~f~Y~Ev~~~~~~ 357 (401)
T PRK05325 283 SRESGGTIVSSAYKLALEIIEERYPPAE-WNIYAFQASDGDNWSSDNPRCVELLREELLPVC----NYFAYIEVTPRAYR 357 (401)
T ss_pred cCCCCCeEehHHHHHHHHHHHhhCCHhH-CeeEEEEcccCCCcCCCCHHHHHHHHHHHHHHh----hheEEEEecCCCCC
Confidence 2446899999999999998887643322 245556555443 33 44443333233 333 345555522 2
Q ss_pred hHHHHHHHHHhhCC
Q psy14660 149 NTELLNTFISTLNG 162 (375)
Q Consensus 149 n~~kL~~fi~~vn~ 162 (375)
....+..|- .+..
T Consensus 358 ~~~l~~~y~-~i~~ 370 (401)
T PRK05325 358 HQTLWREYE-RLQD 370 (401)
T ss_pred chHHHHHHH-Hhhc
Confidence 345556664 5554
No 149
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=49.74 E-value=2.8e+02 Score=27.69 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=26.7
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCC
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEE 146 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e 146 (375)
..++|+|+|..... +-..+.++.+++++. ++.+.+||-|..
T Consensus 192 ~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~ 235 (380)
T PRK15484 192 DETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTA 235 (380)
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 35778888765432 344567777777654 588888887654
No 150
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=49.58 E-value=69 Score=26.49 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
..-...+++.|++.|+.|++|..+...
T Consensus 10 ~~~~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 10 STFIYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 456788999999999999999996553
No 151
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=49.43 E-value=79 Score=26.95 Aligned_cols=119 Identities=27% Similarity=0.263 Sum_probs=61.0
Q ss_pred CccEEEEEEcCCCCC-ChHHHHHHHHHHH---hCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchh
Q psy14660 105 HKMRIIAFVGSPVDL-EERELTKLAKRLK---KEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLS 180 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~-d~~~l~~lakkLK---k~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Ls 180 (375)
....+|+|+|..... +...+.++++.++ ..++.+.|+|-| .....+...++..+-.+ +-|++.-.+...|.
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~---~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~l~ 87 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG---EYKKELKNLIEKLNLKE--NIIFLGYVPDDELD 87 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC---CHHHHHHHHHHHTTCGT--TEEEEESHSHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc---ccccccccccccccccc--cccccccccccccc
Confidence 345677777664432 4556777777775 456666666622 23355666666655322 34444333312344
Q ss_pred hHhhhCCccc----CCCCCC--------C----------------CCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHH
Q psy14660 181 DALISSPIIQ----GEDGAG--------G----------------APGSSYEFGVDPNEDPELALALRVSMEEQRARQ 230 (375)
Q Consensus 181 d~l~sspi~~----~~~~~~--------~----------------~~~~~~~fgvdp~~DPELa~Alr~Sleee~~rq 230 (375)
+.+-.+.|+. -++.+. | .+..++ =+++..--+|+-+|+.-+.....|+
T Consensus 88 ~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~--~~~~~~~~~l~~~i~~~l~~~~~~~ 163 (172)
T PF00534_consen 88 ELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGF--LFDPNDIEELADAIEKLLNDPELRQ 163 (172)
T ss_dssp HHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEE--EESTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeccccccccccccccccccccccceeeccccCCceeeccccceE--EeCCCCHHHHHHHHHHHHCCHHHHH
Confidence 4444444432 111110 0 011111 1477766789999988777764444
No 152
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=49.42 E-value=28 Score=29.74 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=24.3
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||++.+++... --....++++|++.|+.|++|-
T Consensus 1 k~i~l~vtGs~~--~~~~~~~l~~L~~~g~~v~vv~ 34 (129)
T PF02441_consen 1 KRILLGVTGSIA--AYKAPDLLRRLKRAGWEVRVVL 34 (129)
T ss_dssp -EEEEEE-SSGG--GGGHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEEEECHHH--HHHHHHHHHHHhhCCCEEEEEE
Confidence 578888866442 3338889999999999998764
No 153
>PRK08105 flavodoxin; Provisional
Probab=49.20 E-value=21 Score=31.64 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=31.7
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
++|+||.||-.+..+.-...+++.|+..|+.|.++.+.
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~ 39 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDP 39 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechh
Confidence 37889999976666777888999999999999988764
No 154
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=48.52 E-value=3.2e+02 Score=28.05 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=35.6
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
...+|+|+|.-... .-..+.+++++|++.++.+-++|-|.. ...+.|++++..
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~-~~~~~l~~~~~~ 343 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDP-ELEEALRELAER 343 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCH-HHHHHHHHHHHH
Confidence 35688888765432 355677888888888888888887752 224566666654
No 155
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.06 E-value=1e+02 Score=27.89 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=48.8
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSG 167 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~ 167 (375)
+|..+....|++...+ ..| |.|+|+ ++..+.+++++|++.-=.+.|+|+-..-........+++.+|.. +
T Consensus 30 ~g~dl~~~ll~~~~~~--~~~-v~llG~----~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~---~ 99 (171)
T cd06533 30 TGSDLMPALLELAAQK--GLR-VFLLGA----KPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS---G 99 (171)
T ss_pred CcHHHHHHHHHHHHHc--CCe-EEEECC----CHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc---C
Confidence 3444444445543322 245 555565 68889999999999977788888543333333333356666642 4
Q ss_pred eeEEEecCCC
Q psy14660 168 SHMVTVAVGP 177 (375)
Q Consensus 168 Sh~v~vp~g~ 177 (375)
-++|.|-=|.
T Consensus 100 pdiv~vglG~ 109 (171)
T cd06533 100 ADILFVGLGA 109 (171)
T ss_pred CCEEEEECCC
Confidence 6788886665
No 156
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.96 E-value=47 Score=24.93 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
+|-++|. .....+-+.++...|.+.||+|..|..|+..
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 6778888 5555666778889999999999999988864
No 157
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=47.78 E-value=1.8e+02 Score=25.00 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=44.0
Q ss_pred HHHHHhhcccCCCC--CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 69 GRILSKLHQVQPNG--NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 69 ~~Il~~L~~l~~~G--~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
..+...+.++...+ +-+...++.+....+. .+..+.-+||++|+.-.....++.++.+.+++ +.+|.+|+.-.
T Consensus 15 ~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~---~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~~~ 89 (150)
T cd01840 15 PALQEIFPNIQIDAKVGRQMSEAPDLIRQLKD---SGKLRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNPHV 89 (150)
T ss_pred HHHHHHCCCCEEEeeecccHHHHHHHHHHHHH---cCCCCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEECCC
Confidence 34455555554332 2455677776654333 22234567777776444468899999999864 67777776643
No 158
>PF12257 DUF3608: Protein of unknown function (DUF3608); InterPro: IPR022046 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF00610 from PFAM.
Probab=47.74 E-value=56 Score=32.64 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=41.7
Q ss_pred CccHHHHHHHHHHHhh-ccC---CCCCccEEEEEEcCCC--CCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 83 NINFMTGIRIAHLALK-HRQ---GKNHKMRIIAFVGSPV--DLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 83 ~~~l~~gI~vA~laLK-hr~---~k~~~~RIIvfvgSp~--~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.-++..||.+|...+. |-. -++..+-|||++-+.. ..|..-+..+-++|-.+||.||+|++|..
T Consensus 202 ~gNiLEaINlaln~~~~~~idRdl~rTG~~iivITpG~Gvf~Vd~~ll~~T~~rl~~~gi~~DlIcL~~~ 271 (281)
T PF12257_consen 202 KGNILEAINLALNQFDKHYIDRDLRRTGQSIIVITPGTGVFEVDYDLLRLTTQRLLDNGIGIDLICLSKP 271 (281)
T ss_pred cccHHHHHHHHhhhcccccccCcccccCceEEEEcCCCceEEECHHHHHHHHHHHHhcCccEEEEEcCCC
Confidence 3477788888876553 222 1234455665542221 13666666678999999999999999974
No 159
>PRK05569 flavodoxin; Provisional
Probab=47.32 E-value=36 Score=28.97 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=29.9
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|+|+.+|+.+.++.-...+++.+++.|+.|+++.+..
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~ 40 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVAD 40 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 67888888866567777778888988998888887754
No 160
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=46.43 E-value=56 Score=22.30 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=28.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
|-++|.+....++-+.++.+.|.+.+|+++.++-+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 445677654566778889999999999999998764
No 161
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=46.40 E-value=1.1e+02 Score=27.45 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 108 RIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 108 RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|+++.|||.... .+-+..+++.++..+..+.+|.+..
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~ 40 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRD 40 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 4777778876432 3334445666676777777777653
No 162
>KOG4465|consensus
Probab=46.20 E-value=58 Score=34.11 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=63.8
Q ss_pred EEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCH--HHHHHhhcccCCCCC
Q psy14660 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDV--GRILSKLHQVQPNGN 83 (375)
Q Consensus 6 ivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~--~~Il~~L~~l~~~G~ 83 (375)
..+++|+|.||... +.-+-|.|... +.-.| ....+-+-.+-.|+|++. -+-||.|.|. +.++.++.+|..+ +
T Consensus 430 ~~laldvs~sm~~r-v~~s~ln~rea-aa~m~--linlhnead~~~vaf~d~-lte~pftkd~kigqv~~~~nni~~g-~ 503 (598)
T KOG4465|consen 430 FCLALDVSASMNQR-VLGSILNAREA-AAAMC--LINLHNEADSRCVAFCDE-LTECPFTKDMKIGQVLDAMNNIDAG-G 503 (598)
T ss_pred EEEEEecchhhhhh-hhccccchHHH-Hhhhh--eeeeccccceeEEEeccc-cccCCCcccccHHHHHHHHhcCCCC-C
Confidence 56899999999743 22233332222 22222 234566778888999875 5568899884 6677777777654 3
Q ss_pred ccHHHHHHHHHHHhhccCCCCCc-cEEEEEEcCCCCCChHHHHHHHHHHHh
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHK-MRIIAFVGSPVDLEERELTKLAKRLKK 133 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~-~RIIvfvgSp~~~d~~~l~~lakkLKk 133 (375)
++-+--+--|+. .|.+ -..|||++-..-..+......+++.++
T Consensus 504 tdcglpm~wa~e-------nnlk~dvfii~tdndt~ageihp~~aik~yre 547 (598)
T KOG4465|consen 504 TDCGLPMIWAQE-------NNLKADVFIIFTDNDTFAGEIHPAEAIKEYRE 547 (598)
T ss_pred CccCCceeehhh-------cCCCccEEEEEecCcccccccCHHHHHHHHHH
Confidence 443322222331 1222 456777653322334455555555544
No 163
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=45.82 E-value=4.1e+02 Score=28.50 Aligned_cols=171 Identities=17% Similarity=0.212 Sum_probs=91.4
Q ss_pred EecCc-eeE-EecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC--hHHHHHHH
Q psy14660 53 AMADS-VEV-LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE--ERELTKLA 128 (375)
Q Consensus 53 t~ag~-a~v-l~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d--~~~l~~la 128 (375)
.+.|+ ..| ..|..-|+..+....+.-. .. +.+ ..++.+-. .++||+.++= +.-. -.......
T Consensus 242 ~~~gr~v~v~~~PiGID~~~f~~~~~~~~------~~---~~~-~~lr~~~~---~~kiIl~VDR-LDy~KGI~~kl~Af 307 (487)
T TIGR02398 242 DTGNRVVKLGAHPVGTDPERIRSALAAAS------IR---EMM-ERIRSELA---GVKLILSAER-VDYTKGILEKLNAY 307 (487)
T ss_pred eECCEEEEEEEEECEecHHHHHHHhcCch------HH---HHH-HHHHHHcC---CceEEEEecc-cccccCHHHHHHHH
Confidence 33443 555 6777779998865554211 11 111 11332211 2578888853 2211 22222333
Q ss_pred HH-HHhC-----CcEEEEEEecCCcc------hHHHHHHHHHhhCCCCCCC--eeEEEecCC-C--------chhhHhhh
Q psy14660 129 KR-LKKE-----KVNVDIVSFGEEVV------NTELLNTFISTLNGKDGSG--SHMVTVAVG-P--------HLSDALIS 185 (375)
Q Consensus 129 kk-LKk~-----~I~VdiIgfG~e~~------n~~kL~~fi~~vn~~~~~~--Sh~v~vp~g-~--------~Lsd~l~s 185 (375)
++ |+++ +|.+-.|+.++... ....+++++..+|+.-++- ..++.+... + ...|+.+-
T Consensus 308 e~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lv 387 (487)
T TIGR02398 308 ERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWI 387 (487)
T ss_pred HHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEE
Confidence 33 4442 57888888886332 2467788999999864321 223333221 1 25788888
Q ss_pred CCcccCCC------------CCCC------CCC-CCCc--cCCCCCCCHHHH----HHHHhcHHHHHHHHHHHHHHH
Q psy14660 186 SPIIQGED------------GAGG------APG-SSYE--FGVDPNEDPELA----LALRVSMEEQRARQESEARRA 237 (375)
Q Consensus 186 spi~~~~~------------~~~~------~~~-~~~~--fgvdp~~DPELa----~Alr~Sleee~~rq~~~~~~~ 237 (375)
+|+--|-+ ..|. +|. ..+. +=|+|.+-.++| .||.|+.+|.++|-++-.+.-
T Consensus 388 T~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v 464 (487)
T TIGR02398 388 TPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVELKGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAV 464 (487)
T ss_pred CccccccCcchhhHHhhhcCCCCCEEEeccccchhhcCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88765443 0110 111 1111 237999777776 467788888888877766543
No 164
>PRK06703 flavodoxin; Provisional
Probab=45.44 E-value=33 Score=29.76 Aligned_cols=40 Identities=13% Similarity=-0.004 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++++|+.+|..+.++.-...+++.|.+.++.|+++.+...
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 41 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGM 41 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhC
Confidence 3678888887666777788899999999999998887653
No 165
>PRK05568 flavodoxin; Provisional
Probab=45.32 E-value=43 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+++|+..|..+.+.+-+..+++.+++.|+.|.++.+...
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~ 41 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA 41 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 566666776666778788889999999999988887653
No 166
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=44.48 E-value=1.3e+02 Score=31.59 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=41.3
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
+|.||..|.-+.++.-...+|+.|.|.||.|.++.+.+. +..++++.+.+
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~-~~~eI~~~i~~ 297 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA-DPSEIVEEILD 297 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC-CHHHHHHHHhh
Confidence 788888887776788888999999999999999999887 45567765543
No 167
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=44.15 E-value=3e+02 Score=26.52 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
...|+++|..... +...+.+..+++++. ++++.++|.|... ..++.++...
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~---~~~~~~~~~~ 257 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEE---EKLKELIEEL 257 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchH---HHHHHHHHHc
Confidence 4567788764322 344566666776654 5888999988753 4555555543
No 168
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=44.08 E-value=8.5 Score=37.03 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.4
Q ss_pred CCCCCCHHHHHHHhhhhcCccC
Q psy14660 345 GVDPQSAEVRHALSSSAEKPAK 366 (375)
Q Consensus 345 gvdp~~~~v~~al~~l~~~~~~ 366 (375)
-|||.||+.+..|..+-++..|
T Consensus 172 ~vDprdprF~eml~~kEkeeKK 193 (217)
T PF10147_consen 172 KVDPRDPRFQEMLQEKEKEEKK 193 (217)
T ss_pred cCCCCChHHHHHHHHHHHHHHH
Confidence 4899999999999877655433
No 169
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=43.95 E-value=2.8e+02 Score=26.07 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCC---CChHHHHHHHHHHHh---CCcEEEEEEecCCcch---------------HHHHHHHHHhhCCCCC
Q psy14660 107 MRIIAFVGSPVD---LEERELTKLAKRLKK---EKVNVDIVSFGEEVVN---------------TELLNTFISTLNGKDG 165 (375)
Q Consensus 107 ~RIIvfvgSp~~---~d~~~l~~lakkLKk---~~I~VdiIgfG~e~~n---------------~~kL~~fi~~vn~~~~ 165 (375)
.++|+|.+.... -+...+.++++.|++ .++.+-++|-|..... .+.+..+..
T Consensus 191 ~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~------- 263 (365)
T cd03825 191 KKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPPDLPFPVHYLGSLNDDESLALIYS------- 263 (365)
T ss_pred CeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhccCCCceEecCCcCCHHHHHHHHH-------
Confidence 355555433221 134556677777776 4555555555443211 122222222
Q ss_pred CCeeEEEecCC-----CchhhH-hhhCCcccCCCCCCC--CCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q psy14660 166 SGSHMVTVAVG-----PHLSDA-LISSPIIQGEDGAGG--APGSSYEFGVDPNEDPELALALRVSMEEQR 227 (375)
Q Consensus 166 ~~Sh~v~vp~g-----~~Lsd~-l~sspi~~~~~~~~~--~~~~~~~fgvdp~~DPELa~Alr~Sleee~ 227 (375)
.++++..|.. ..+.+. ....|++.-+.++.. ...+...|-+++..--+|+-||+.-++...
T Consensus 264 -~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~ 332 (365)
T cd03825 264 -AADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPD 332 (365)
T ss_pred -hCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 3677777763 123333 344576654433211 111111233565555678888887775443
No 170
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.76 E-value=1.5e+02 Score=26.79 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=40.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCc
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH 178 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~ 178 (375)
|.|+|+ +++.+.+++.+|++.-=.+.|+|.-..-.+..-.+++++.+|.. +-.+|.|-=|..
T Consensus 51 ifllG~----~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~---~pdiv~vglG~P 112 (172)
T PF03808_consen 51 IFLLGG----SEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS---GPDIVFVGLGAP 112 (172)
T ss_pred EEEEeC----CHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc---CCCEEEEECCCC
Confidence 566665 58889999999999977777887655433434445555555532 457777766653
No 171
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=42.72 E-value=63 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|-++|.+...+++-+.++.+.|.+.+|.++.|+.|+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3555677766677778889999999999999998764
No 172
>PRK09739 hypothetical protein; Provisional
Probab=42.69 E-value=1.3e+02 Score=27.40 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=30.5
Q ss_pred cEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+++.|||.... ..-+..+++.+++.+..|.++.+...
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~ 45 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRS 45 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhh
Confidence 68999999997632 33355567888888999999988764
No 173
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=42.67 E-value=62 Score=22.98 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=26.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
|-++|.+....++-+.++...|.+.||+|+.|+.
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566766665677778889999999999999874
No 174
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.60 E-value=62 Score=23.00 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=26.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
|-++|.+....++-+.++.+.|.+.+|+++.|+.
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4566766655677788899999999999999974
No 175
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=42.27 E-value=10 Score=36.31 Aligned_cols=69 Identities=14% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc---hHHHHHHHHHhhCCCCCCCeeEEEecCCCc-
Q psy14660 103 KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV---NTELLNTFISTLNGKDGSGSHMVTVAVGPH- 178 (375)
Q Consensus 103 k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~---n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~- 178 (375)
+.|++||++|..+ +...|+.|++.|..|.-|-+..... -.+.|.+++.... -.+++++.|+..
T Consensus 38 ~~HkqKl~l~~sa--------MRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~-----~~~~~~~~P~d~~ 104 (224)
T PF04244_consen 38 PHHKQKLVLFFSA--------MRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHG-----IDRLHVMEPGDYR 104 (224)
T ss_dssp ---HHHHHHHHHH--------HHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH---------EEEE--S-HH
T ss_pred cccHHHHHHHHHH--------HHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcC-----CCEEEEECCCCHH
Confidence 4566777777543 7788999999999999999987542 2577877777643 468999999986
Q ss_pred hhhHhh
Q psy14660 179 LSDALI 184 (375)
Q Consensus 179 Lsd~l~ 184 (375)
|...|-
T Consensus 105 l~~~l~ 110 (224)
T PF04244_consen 105 LEQRLE 110 (224)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 176
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=26 Score=33.53 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=24.7
Q ss_pred CCHHHHHHHHhcCC--------------CCCCC-CHHHHHHHh
Q psy14660 331 NDAAFLQSVLENLP--------------GVDPQ-SAEVRHALS 358 (375)
Q Consensus 331 ~d~~fl~svl~~lp--------------gvdp~-~~~v~~al~ 358 (375)
-.|+||..+|...| ||||| ||.+-.||+
T Consensus 173 P~p~ll~~~~~~spig~g~~g~~~~~e~gvDp~lDpELA~Alr 215 (243)
T COG5148 173 PNPELLDRVLPFSPIGQGVVGDDLQLEYGVDPNLDPELAEALR 215 (243)
T ss_pred CCHHHHHhhccCCccccccccCccceecCCCCCCCHHHHHHHH
Confidence 47999999999888 69999 999988886
No 177
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=41.79 E-value=62 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=32.9
Q ss_pred ceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccC
Q psy14660 4 ESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRS 43 (375)
Q Consensus 4 EaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~ 43 (375)
..++|+||.+.+|.-+.-....++....++-.++....++
T Consensus 41 ~~~~i~ld~~~~~~~~~~~~~~~e~~l~~a~~l~~~~~~~ 80 (86)
T PF01882_consen 41 QPVWIVLDLSPSMYFGSNGRSKFERALSAAASLANQALRQ 80 (86)
T ss_pred CcEEEEEECCCccccCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999998888899998888888777765444
No 178
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.78 E-value=73 Score=24.19 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
-+|-++|.... .++-+.++.+.|.++||+|..|..|+.
T Consensus 3 a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 3 AIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred EEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCC
Confidence 46888898885 677777889999999999999999885
No 179
>PRK09004 FMN-binding protein MioC; Provisional
Probab=41.23 E-value=36 Score=30.04 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
+|+||.+|-.+..+.-...+++.++..|+.|.++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~ 38 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHG 38 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEecc
Confidence 688888987666677778889999999999998764
No 180
>KOG4175|consensus
Probab=40.91 E-value=1.8e+02 Score=28.33 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=45.8
Q ss_pred cCCCCCcEEEEEec--CceeEEecCCCCHHHHHHhhcccCC-------------CCCccHHHHHHHHHHHhhccCCCCCc
Q psy14660 42 RSNPENNVGLLAMA--DSVEVLATLTSDVGRILSKLHQVQP-------------NGNINFMTGIRIAHLALKHRQGKNHK 106 (375)
Q Consensus 42 ~~NPe~~VGLVt~a--g~a~vl~pLT~D~~~Il~~L~~l~~-------------~G~~~l~~gI~vA~laLKhr~~k~~~ 106 (375)
+.-.+++..||+|- |.|.| .+..+|+..|++-.. ..++.++.+=++| |+.
T Consensus 11 ~aK~enknaLvtfiTaG~P~v-----~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~a---L~n------- 75 (268)
T KOG4175|consen 11 RAKSENKNALVTFITAGDPDV-----STTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRA---LLN------- 75 (268)
T ss_pred HHHhcCCceEEEEEecCCCcH-----HHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHH---HHc-------
Confidence 34457889999885 33332 455677777765311 1233344333333 322
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+.+-..++...|..+..||.|-||-||=
T Consensus 76 -----------g~tl~~i~emvk~ar~~gvt~PIiLmgY 103 (268)
T KOG4175|consen 76 -----------GTTLNSIIEMVKEARPQGVTCPIILMGY 103 (268)
T ss_pred -----------CCcHHHHHHHHHHhcccCcccceeeeec
Confidence 1234556777777788888888888874
No 181
>PF10293 DUF2405: Domain of unknown function (DUF2405); InterPro: IPR019409 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a conserved region found within FMP27.
Probab=40.56 E-value=23 Score=32.17 Aligned_cols=29 Identities=38% Similarity=0.683 Sum_probs=24.8
Q ss_pred CCCCCCH---HHHHHHHhcHHHHHHHHHHHHH
Q psy14660 207 VDPNEDP---ELALALRVSMEEQRARQESEAR 235 (375)
Q Consensus 207 vdp~~DP---ELa~Alr~Sleee~~rq~~~~~ 235 (375)
+.-++|| ||.|-.|+-+.|+|+|.++++.
T Consensus 111 f~~eDDPFE~~L~~Iy~lGl~Eq~~Rl~r~~~ 142 (157)
T PF10293_consen 111 FELEDDPFESELGMIYRLGLDEQRERLEREEA 142 (157)
T ss_pred EEEeCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4557788 9999999999999999988754
No 182
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=40.32 E-value=97 Score=32.33 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHhCCcEEE---EEEe-cCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhhhCCccc
Q psy14660 120 EERELTKLAKRLKKEKVNVD---IVSF-GEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALISSPIIQ 190 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~Vd---iIgf-G~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~sspi~~ 190 (375)
+..+..+.++.+++.||.|. |||| |+..+.....-.|+..++-. .-..++++.-||..|.+.+...-++.
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~-~~~~~~l~P~PGT~l~~~~~~~g~~~ 394 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPH-TIQVSLAAPYPGTELYDQAKQNGWIT 394 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC-ceeeeecccCCCcHHHHHHHHCCCcC
Confidence 34567788999999999886 5676 44444455556676665532 22345666678888888877665554
No 183
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=40.18 E-value=73 Score=22.25 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|-++|.+.....+-..++.+.|.+.+|+++.++-+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3556677665566677788999999999999887654
No 184
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=39.72 E-value=55 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=26.6
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
++||++++.+. ...+...++.++|.+.++.|.++.+
T Consensus 44 ~~vii~~D~D~-aG~~a~~~~~~~l~~~g~~~~~~~~ 79 (79)
T cd03364 44 KEVILAFDGDE-AGQKAALRALELLLKLGLNVRVLTL 79 (79)
T ss_pred CeEEEEECCCH-HHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68888886431 1234567899999999999998853
No 185
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=39.47 E-value=3.6e+02 Score=27.42 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=34.9
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
...+|+|+|..... ....+.++++++++.++.+-++|-|.. ...+.+++++..
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~-~~~~~~~~~~~~ 348 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP-EYEEALRELAAR 348 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH-HHHHHHHHHHHh
Confidence 45678888765432 355677888888888888888887743 234556666554
No 186
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=39.26 E-value=4.2e+02 Score=26.75 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=37.6
Q ss_pred ceEEEEEeCCcc--ccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc
Q psy14660 4 ESTMICVDNSDF--MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS 57 (375)
Q Consensus 4 EaivI~lDnSes--MrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~ 57 (375)
.++++|+|.|++ ..-.|-..+||.-.+...+.+++... -..+.|+.|.+.
T Consensus 209 ~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~----~~~~piil~~NK 260 (342)
T smart00275 209 TAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW----FANTSIILFLNK 260 (342)
T ss_pred CEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc----ccCCcEEEEEec
Confidence 589999999987 34556667999988888888886432 245778888875
No 187
>KOG3768|consensus
Probab=38.99 E-value=81 Score=35.00 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=64.1
Q ss_pred eEEEEEeCCccccCCCCCC-CHHHHHHHHHHHHHHhhccC--CCCCcEEEEEecCce-eEEecCCCCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLP-TRLQAQQDAVNLVCHSKTRS--NPENNVGLLAMADSV-EVLATLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~P-sRL~Aq~~Av~~~v~~k~~~--NPe~~VGLVt~ag~a-~vl~pLT~D~~~Il~~L~~l~~ 80 (375)
.++++||.|.||...-+.- |=|..+|.||+.|+...++. .-.++.-|+||.--+ .|-+-.-..+..++.-|.++..
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 4788999999998877764 67789999999999765442 234566777777644 2334444566677777777754
Q ss_pred -CCCccHHHHHHHHHHHh
Q psy14660 81 -NGNINFMTGIRIAHLAL 97 (375)
Q Consensus 81 -~G~~~l~~gI~vA~laL 97 (375)
.|.+-+.+++--|...|
T Consensus 83 ~~~s~~~~~~~t~AFdlL 100 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLL 100 (888)
T ss_pred ccchhhhhHHHHHHhhhh
Confidence 45667777766565444
No 188
>KOG1226|consensus
Probab=38.76 E-value=87 Score=35.41 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=72.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---ee----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VE---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~---------------------- 59 (375)
.+++++|+|.||++ =|+-.+..-..|.+..-+.--.-++|.=+|... |+
T Consensus 134 DLYyLMDlS~SM~D------Dl~~l~~LG~~L~~~m~~lT~nfrlGFGSFVDK~v~P~i~~~pekl~npc~~~~~C~ppf 207 (783)
T KOG1226|consen 134 DLYYLMDLSYSMKD------DLENLKSLGTDLAREMRKLTSNFRLGFGSFVDKTVSPYISTTPEKLRNPCPNYKNCAPPF 207 (783)
T ss_pred eEEEEeecchhhhh------hHHHHHHHHHHHHHHHHHHhccCCccccchhccccccccccCcHHhcCCCCCcccCCCCc
Confidence 46889999999996 233333333333333322333456776666542 22
Q ss_pred ---EEecCCCCHHHHHHhhcccCCCCCccH-----HHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-------------
Q psy14660 60 ---VLATLTSDVGRILSKLHQVQPNGNINF-----MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD------------- 118 (375)
Q Consensus 60 ---vl~pLT~D~~~Il~~L~~l~~~G~~~l-----~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~------------- 118 (375)
-+.+||.|...+.+.+++-++.|..+- -.-+|.|. --++.-=++.-.|++||+.+..-
T Consensus 208 gfkhvLsLT~~~~~F~~~V~~q~ISgNlDaPEGGfDAimQaav-C~~~IGWR~~a~~lLVF~td~~~H~a~DgkLaGiv~ 286 (783)
T KOG1226|consen 208 GFKHVLSLTNDAEEFNEEVGKQRISGNLDAPEGGFDAIMQAAV-CTEKIGWRNDATRLLVFSTDAGFHFAGDGKLAGIVQ 286 (783)
T ss_pred ccceeeecCCChHHHHHHHhhceeccCCCCCCchHHHHHhhhh-ccccccccccceeEEEEEcCcceeeecccceeeEec
Confidence 256789999999999987665554432 22222222 11222223445788998743210
Q ss_pred -----C--------------ChHHHHHHHHHHHhCCcEE
Q psy14660 119 -----L--------------EERELTKLAKRLKKEKVNV 138 (375)
Q Consensus 119 -----~--------------d~~~l~~lakkLKk~~I~V 138 (375)
+ |-..+-.++.+|+.+||.+
T Consensus 287 pnDG~CHL~~~g~Yt~S~~qdyPSia~l~~kl~~~ni~~ 325 (783)
T KOG1226|consen 287 PNDGQCHLDKNGEYTQSTTQDYPSIAQLAQKLADNNINT 325 (783)
T ss_pred CCCCccccCCCCccceecCCCCCcHHHHHHHHhhhcchh
Confidence 0 1124667899999999864
No 189
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=38.55 E-value=74 Score=30.48 Aligned_cols=69 Identities=16% Similarity=0.025 Sum_probs=45.1
Q ss_pred CCCccEEEEEEcCCCCC--ChHHHHHHHHHHHhCCcEEEEEEecCCc-ch-----HHHHHHHHHhhCCCCCCCeeEEEec
Q psy14660 103 KNHKMRIIAFVGSPVDL--EERELTKLAKRLKKEKVNVDIVSFGEEV-VN-----TELLNTFISTLNGKDGSGSHMVTVA 174 (375)
Q Consensus 103 k~~~~RIIvfvgSp~~~--d~~~l~~lakkLKk~~I~VdiIgfG~e~-~n-----~~kL~~fi~~vn~~~~~~Sh~v~vp 174 (375)
++...+|++++||.... +..-+..+++.+...++.|.+|.+..-. ++ .+....|.+.+...| -+|.+.
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD----gvii~T 98 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE----GQVWCS 98 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC----EEEEeC
Confidence 45668999999998764 3444556677777679999999987521 11 234455666666544 455565
Q ss_pred C
Q psy14660 175 V 175 (375)
Q Consensus 175 ~ 175 (375)
|
T Consensus 99 P 99 (219)
T TIGR02690 99 P 99 (219)
T ss_pred C
Confidence 5
No 190
>PF14275 DUF4362: Domain of unknown function (DUF4362)
Probab=38.44 E-value=37 Score=28.78 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.1
Q ss_pred EEEEecCCcchHHHHHHHHHhhCCCC
Q psy14660 139 DIVSFGEEVVNTELLNTFISTLNGKD 164 (375)
Q Consensus 139 diIgfG~e~~n~~kL~~fi~~vn~~~ 164 (375)
|||.=+.+.+|.++|.+|++.|+.+-
T Consensus 4 DVi~~~~~i~Nl~kl~~Fi~nv~~~k 29 (98)
T PF14275_consen 4 DVINKHGEIENLDKLDQFIENVEQGK 29 (98)
T ss_pred CEEEeCCeEEeHHHHHHHHHHHhcCC
Confidence 46666888999999999999999754
No 191
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=37.92 E-value=1.4e+02 Score=29.26 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=33.4
Q ss_pred HhhccCCCCCccEEEEEEcCCCCCChHH-HHHHHHHHHhCCcEEEEEEecC
Q psy14660 96 ALKHRQGKNHKMRIIAFVGSPVDLEERE-LTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 96 aLKhr~~k~~~~RIIvfvgSp~~~d~~~-l~~lakkLKk~~I~VdiIgfG~ 145 (375)
.|+...-...+.++|.|+|.+.. .... +..++..+++.|.+|-+|++-.
T Consensus 23 ~~~~~~~~~~~~~~i~i~G~~G~-GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 23 LLDRIMPYTGNAHRVGITGTPGA-GKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred HHHhCCcccCCceEEEEECCCCC-CHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 34444434455788888876543 4444 5667888999999999988754
No 192
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=37.89 E-value=2.7e+02 Score=26.99 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=30.5
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC------CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE------KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~------~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
..+|+++|..... +...+.++++.+.+. ++.+.++|=|.. .+.++++++..+
T Consensus 194 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~---~~~~~~~~~~~~ 252 (374)
T TIGR03088 194 SVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPA---RGACEQMVRAAG 252 (374)
T ss_pred CeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCch---HHHHHHHHHHcC
Confidence 5677788764432 355566666666543 466666665543 356677766544
No 193
>PRK13973 thymidylate kinase; Provisional
Probab=37.72 E-value=1.3e+02 Score=27.90 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=36.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
.++|+|-|-+...-.-.+..+++.|.+.|+.|.++.+-......+.+.+++.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL 54 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc
Confidence 4789998776544345567789999999998887766654444566665543
No 194
>KOG4848|consensus
Probab=37.63 E-value=14 Score=35.25 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCCCCHHHHHHHhhhhcCc
Q psy14660 346 VDPQSAEVRHALSSSAEKP 364 (375)
Q Consensus 346 vdp~~~~v~~al~~l~~~~ 364 (375)
|||-||+.+..|.++-+++
T Consensus 184 vDprd~RF~emLqqkEkee 202 (225)
T KOG4848|consen 184 VDPRDPRFEEMLQQKEKEE 202 (225)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 8999999999997776544
No 195
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth []. The dwarfin family also includes the Drosophila protein MAD that is required for the function of decapentaplegic (DPP) and may play a role in DPP signalling. Drosophila Mad binds to DNA and directly mediates activation of vestigial by Dpp []. This domain is also found in nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF). This entry represents the MH1 (MAD homology 1) domain is found at the amino terminus of MAD related proteins such as Smads. This domain is separated from the MH2 domain by a non-conserved linker region. The crystal structure of the MH1 domain shows that a highly conserved 11 residue beta hairpin is used to bind the DNA consensus sequence GNCN in the major groove, shown to be vital for the transcriptional activation of target genes. Not all examples of MH1 can bind to DNA however. Smad2 cannot bind DNA and has a large insertion within the hairpin that presumably abolishes DNA binding. A basic helix (H2) in MH1 with the nuclear localisation signal KKLKK has been shown to be essential for Smad3 nuclear import. Smads also use the MH1 domain to interact with transcription factors such as Jun, TFE3, Sp1, and Runx [, , ].; GO: 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3QSV_A 1MHD_A 1OZJ_A 3KMP_B.
Probab=37.11 E-value=45 Score=28.38 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEec
Q psy14660 122 RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVA 174 (375)
Q Consensus 122 ~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp 174 (375)
+.+..+.|+||+++ .-|+.|+.+|.++++..+..|+||
T Consensus 3 k~~~sLlkkLK~~~---------------~~le~L~~Av~s~g~~~t~CV~i~ 40 (103)
T PF03165_consen 3 KAIKSLLKKLKKKI---------------GQLEELLKAVESRGDPPTKCVTIP 40 (103)
T ss_dssp HHHHHHHHHHTTTC---------------THHHHHHHHHHCTTTSTS---EEE
T ss_pred HHHHHHHHHHcccc---------------chHHHHHHHHhcCCCCCCCcEEec
Confidence 45778899999864 357788899986656789999998
No 196
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=36.29 E-value=1.5e+02 Score=27.80 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=46.4
Q ss_pred cccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 76 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 76 ~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
..|...|.++-..+-++....+.. .+.+..+.|.|++.||.+ +-.....+...++.....|.+++.|-..
T Consensus 36 r~I~l~g~I~~~~~~~i~~~L~~l-~~~~~~~~I~l~INSpGG-~v~~g~~I~d~i~~~~~~v~t~~~G~aa 105 (207)
T PRK12553 36 RIIFLGGQVDDASANDVMAQLLVL-ESIDPDRDITLYINSPGG-SVTAGDAIYDTIQFIRPDVQTVCTGQAA 105 (207)
T ss_pred eEEEEcceECHHHHHHHHHHHHHH-HhCCCCCCEEEEEeCCCC-cHHHHHHHHHHHHhcCCCcEEEEEeehh
Confidence 345566777777766655543332 233345789999999865 5555666777777777788888887653
No 197
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=36.27 E-value=53 Score=27.45 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
|+|+.+|..+.++.-...+++.++..++.|+++.+..
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~ 37 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVAD 37 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4566678766667777788899999999998888754
No 198
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=36.11 E-value=1.9e+02 Score=27.95 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=10.5
Q ss_pred CHHHHHHHHhcHHHHH
Q psy14660 212 DPELALALRVSMEEQR 227 (375)
Q Consensus 212 DPELa~Alr~Sleee~ 227 (375)
..+|+-||+--++...
T Consensus 324 ~~~i~~~i~~ll~~~~ 339 (363)
T cd03786 324 PEAILAAIEKLLSDEF 339 (363)
T ss_pred HHHHHHHHHHHhcCch
Confidence 3568888877665443
No 199
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=36.06 E-value=3.5e+02 Score=24.89 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=61.0
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
|...-..++.....+++....+.. .-.++|+|.........+..++ ++.++.=.|.-+|.-. . +.+..+..
T Consensus 210 G~~~~~K~~~~li~a~~~l~~~~~-~~~l~i~G~~~~~~~~~~~~~~---~~~~~~~~v~~~g~~~-~-~~~~~~~~--- 280 (375)
T cd03821 210 GRLHPKKGLDLLIEAFAKLAERFP-DWHLVIAGPDEGGYRAELKQIA---AALGLEDRVTFTGMLY-G-EDKAAALA--- 280 (375)
T ss_pred eCcchhcCHHHHHHHHHHhhhhcC-CeEEEEECCCCcchHHHHHHHH---HhcCccceEEEcCCCC-h-HHHHHHHh---
Confidence 555555555555555544322212 2345666754322223233322 4445433333344332 1 22333332
Q ss_pred CCCCCCeeEEEecCC----C-chhhHh-hhCCcccCCCCCCC---CCCCCCccCCCCCCCHHHHHHHHhcHHHH
Q psy14660 162 GKDGSGSHMVTVAVG----P-HLSDAL-ISSPIIQGEDGAGG---APGSSYEFGVDPNEDPELALALRVSMEEQ 226 (375)
Q Consensus 162 ~~~~~~Sh~v~vp~g----~-~Lsd~l-~sspi~~~~~~~~~---~~~~~~~fgvdp~~DPELa~Alr~Sleee 226 (375)
.++++..|.. + .+.+.+ ...|++..+.++.. ..+.+ | +.|+.+.+|+-+|..-++..
T Consensus 281 -----~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 281 -----DADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEYGCG--W-VVDDDVDALAAALRRALELP 346 (375)
T ss_pred -----hCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhcCce--E-EeCCChHHHHHHHHHHHhCH
Confidence 3677777763 2 244444 45677765543211 11111 1 34555689999998877653
No 200
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=34.82 E-value=1.7e+02 Score=26.23 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=39.4
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
...|.++-..+-++....+..+ .....+.|+|++.||.+ +......+...|+..+..|.++..|...
T Consensus 13 ~i~g~I~~~~~~~i~~~l~~~~-~~~~~~~i~l~inSpGG-~v~~~~~i~~~l~~~~~~v~t~~~g~aa 79 (171)
T cd07017 13 FLGGPIDDEVANLIIAQLLYLE-SEDPKKPIYLYINSPGG-SVTAGLAIYDTMQYIKPPVSTICLGLAA 79 (171)
T ss_pred EEcCEEcHHHHHHHHHHHHHHH-ccCCCCceEEEEECCCC-CHHHHHHHHHHHHhcCCCEEEEEEeEeh
Confidence 3445554444433332222222 22334789999999865 5555666777777777778877777653
No 201
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=34.71 E-value=67 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=31.0
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEEecCC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEE 146 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIgfG~e 146 (375)
+|+|+.+|+.+.+.+-+..+++.+++ .|+.|.++.+.+.
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~ 42 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPET 42 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecccc
Confidence 68888899866566767778888887 8999999988643
No 202
>KOG2594|consensus
Probab=34.65 E-value=1.8e+02 Score=30.34 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=61.0
Q ss_pred ceEEEEEeCCcccc-------CCCCCCCHHH-HHHHHHHHHHHhhccCC---------CCCcEEEEEecCceeEEecCCC
Q psy14660 4 ESTMICVDNSDFMR-------NGDFLPTRLQ-AQQDAVNLVCHSKTRSN---------PENNVGLLAMADSVEVLATLTS 66 (375)
Q Consensus 4 EaivI~lDnSesMr-------ngD~~PsRL~-Aq~~Av~~~v~~k~~~N---------Pe~~VGLVt~ag~a~vl~pLT~ 66 (375)
|..++..++++|-. |-=+.-+|.+ -..++.-.++..||+.. +-+..-|++|.
T Consensus 2 e~~~~g~~l~~s~c~KCd~na~~~~v~~~k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~----------- 70 (396)
T KOG2594|consen 2 EDAVSGTGLHESACVKCDKNANMTTVDGKKDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFD----------- 70 (396)
T ss_pred CcccccccCCcccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEec-----------
Confidence 33445566666665 5455555555 35567777777787762 22233333333
Q ss_pred CHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCc--cEEEEEEcCCCCCChHHHHHHHHHHHhCCcE--EEEEE
Q psy14660 67 DVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHK--MRIIAFVGSPVDLEERELTKLAKRLKKEKVN--VDIVS 142 (375)
Q Consensus 67 D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~--~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~--VdiIg 142 (375)
|+.+=.--|++++++||...+++.+ .++++|+---...+..-..+....+.+.++. .++|.
T Consensus 71 ---------------G~ssSlvlLd~vh~~l~q~k~~~~~~~~tv~v~~~~~~~~~~~~v~e~lq~l~~~~~~~~~~~V~ 135 (396)
T KOG2594|consen 71 ---------------GGSSSLVLLDFVHLALKQLKNKRLRRDFTVLVLVVFQEFTDSTAVFEALQELIIDNIEWVRYVVS 135 (396)
T ss_pred ---------------CCcchHhHHHHHHHHHHHhhhhhcCcCCceEEEEEEEeccchHHHHHHHHHHHHhhccccceEEE
Confidence 3333344577888888766555433 3444444221112332344444444444432 36777
Q ss_pred ecCCc
Q psy14660 143 FGEEV 147 (375)
Q Consensus 143 fG~e~ 147 (375)
++...
T Consensus 136 ~la~~ 140 (396)
T KOG2594|consen 136 CLAPP 140 (396)
T ss_pred ecCch
Confidence 77654
No 203
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=34.26 E-value=1.9e+02 Score=27.09 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=43.5
Q ss_pred cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 78 VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 78 l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
|.+.|.++-..+-.+....+. .......+.|+|++-||.+ +-.....+...++.....|.+|+.|-..
T Consensus 26 I~i~g~I~~~~~~~i~~~L~~-l~~~~~~~~I~l~INSpGG-~v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 26 IVIAGEINKDLSELFQEKILL-LEALDSKKPIFVYIDSEGG-DIDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred EEECCEEcHHHHHHHHHHHHH-HHhcCCCCCEEEEEECCCC-CHHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 345566655555554443222 1122334789999999865 5566677777888888888888888654
No 204
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=34.17 E-value=1.4e+02 Score=27.37 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.+..+.++++.++++++.|.|.+-|-..
T Consensus 38 tp~~~~~~~~~a~~~g~~viIa~AG~aa 65 (156)
T TIGR01162 38 TPELMLEYAKEAEERGIKVIIAGAGGAA 65 (156)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCccc
Confidence 4556666666666666666666665543
No 205
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=33.93 E-value=74 Score=30.01 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=27.8
Q ss_pred cEEEEEEcCCC-CCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPV-DLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~-~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+||+++..++. +..+.....+++.|++.|+.|.++.+...
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 36777766654 23466777788888888888888876554
No 206
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=33.82 E-value=93 Score=25.63 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHh
Q psy14660 124 LTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDAL 183 (375)
Q Consensus 124 l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l 183 (375)
|......|++.||+|-+|++|+.. .++.|++...- ..- |.++|.-.|+..|
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~----~~~~f~~~~~~----p~~-ly~D~~~~lY~~l 52 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPE----GIEKFCELTGF----PFP-LYVDPERKLYKAL 52 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHH----HHHHHHhccCC----CCc-EEEeCcHHHHHHh
Confidence 445567889999999999998873 37788765321 223 4455544466544
No 207
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=33.77 E-value=2.4e+02 Score=30.94 Aligned_cols=83 Identities=28% Similarity=0.335 Sum_probs=51.7
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc-----chHHHH
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV-----VNTELL 153 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~-----~n~~kL 153 (375)
.|.|...+-+++..+.++.+.. ++++|+..|+. ..-..+|--.+..|++|.|+ ++... .|..++
T Consensus 296 nptGS~K~r~al~~~~~a~~~g-----~~~vi~e~gsG-----nhG~A~A~~aa~~Gl~~~I~-m~~~~~~~~~~nv~~m 364 (610)
T PRK13803 296 NHTGSHKINNALGQALLAKRMG-----KTRIIAETGAG-----QHGVATATACALFGLKCTIF-MGEEDIKRQALNVERM 364 (610)
T ss_pred CCcccHHHHHHHHHHHHHHHcC-----CCEEEEecChH-----HHHHHHHHHHHHcCCcEEEE-EeCCcccchhhHHHHH
Confidence 4556666667777776654431 35777766553 35667777779999998877 66542 133444
Q ss_pred HHHHHhhCCCCCCCeeEEEecCCC-chhhH
Q psy14660 154 NTFISTLNGKDGSGSHMVTVAVGP-HLSDA 182 (375)
Q Consensus 154 ~~fi~~vn~~~~~~Sh~v~vp~g~-~Lsd~ 182 (375)
+.| |-+++.|+.|. .+.|.
T Consensus 365 ~~~----------GA~Vi~v~~~~~~~~~a 384 (610)
T PRK13803 365 KLL----------GANVIPVLSGSKTLKDA 384 (610)
T ss_pred HHC----------CCEEEEECCCCCCHHHH
Confidence 443 56888888764 35444
No 208
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=33.40 E-value=2.1e+02 Score=26.51 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=41.2
Q ss_pred cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 78 VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 78 l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
|...|.++-..+-++....+. .......+.|++++.||.+ +-..-..+...|+..+..|.++++|....
T Consensus 29 I~l~g~I~~~~~~~ii~~L~~-l~~~~~~~~i~l~InSpGG-~v~~g~~I~d~l~~~~~~v~t~~~G~AaS 97 (191)
T TIGR00493 29 IFLSGEVNDSVANLIVAQLLF-LEAEDPEKDIYLYINSPGG-SITAGLAIYDTMQFIKPDVSTICIGQAAS 97 (191)
T ss_pred EEEccEEChHHHHHHHHHHHH-hhccCCCCCEEEEEECCCC-CHHHHHHHHHHHHhcCCCEEEEEEEeecc
Confidence 345566655444444443222 2222334679999999865 55556666667777667777777776543
No 209
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=33.33 E-value=4.1e+02 Score=29.51 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=50.4
Q ss_pred EEEecCc-eeE-EecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC-ChHHHHHH
Q psy14660 51 LLAMADS-VEV-LATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL-EERELTKL 127 (375)
Q Consensus 51 LVt~ag~-a~v-l~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~-d~~~l~~l 127 (375)
-+.+.|. ..+ +.|..-|...+......- . ++.....|+... ..+++|+++|-.... +-..+.+.
T Consensus 220 ~~~~~gr~~~v~v~p~GID~~~f~~~~~~~------~----~~~~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~A 286 (726)
T PRK14501 220 EIRLGGRIVRVDAFPMGIDYDKFHNSAQDP------E----VQEEIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLLA 286 (726)
T ss_pred eEEECCEEEEEEEEECeEcHHHHHHHhcCc------h----HHHHHHHHHHHc---CCCEEEEEecCcccccCHHHHHHH
Confidence 4555664 333 567777887775543211 0 111111122221 225688888764422 23344555
Q ss_pred HHHHHhC------CcEEEEEEecCCc--c----hHHHHHHHHHhhCCCC
Q psy14660 128 AKRLKKE------KVNVDIVSFGEEV--V----NTELLNTFISTLNGKD 164 (375)
Q Consensus 128 akkLKk~------~I~VdiIgfG~e~--~----n~~kL~~fi~~vn~~~ 164 (375)
..++.+. ++.+-+|+.|... . -...+.+++..+|+.-
T Consensus 287 ~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~ 335 (726)
T PRK14501 287 FERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEF 335 (726)
T ss_pred HHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhc
Confidence 5554433 3666677766422 1 1344566777778653
No 210
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=33.22 E-value=1.3e+02 Score=29.84 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=59.2
Q ss_pred cEEEEEecC-ceeEEecCCCCHHHHHHhhcccCCC-C-CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHH
Q psy14660 48 NVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPN-G-NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEEREL 124 (375)
Q Consensus 48 ~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~~~-G-~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l 124 (375)
+||+|-+++ +..+++.|--|-..-..-+..--.+ | ...-..+=.+....++.+. -..|||+ ||+..-++ .
T Consensus 4 KiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~-----pDf~i~i-sPN~a~PG-P 76 (277)
T PRK00994 4 KIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWK-----PDFVIVI-SPNPAAPG-P 76 (277)
T ss_pred EEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhC-----CCEEEEE-CCCCCCCC-c
Confidence 578888776 4344444433332222222211111 2 2333344445555555543 2456665 77754333 4
Q ss_pred HHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 125 TKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 125 ~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
.+.-+.|+..||++-||+=|......+.|+ + .|.-|+.|+..+
T Consensus 77 ~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~---~-------~g~GYIivk~Dp 119 (277)
T PRK00994 77 KKAREILKAAGIPCIVIGDAPGKKVKDAME---E-------QGLGYIIVKADP 119 (277)
T ss_pred hHHHHHHHhcCCCEEEEcCCCccchHHHHH---h-------cCCcEEEEecCc
Confidence 455566799999999988776543333333 2 256677776654
No 211
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=33.15 E-value=3.9e+02 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.1
Q ss_pred HHHHHHHhCCcEEEEEEecCCc
Q psy14660 126 KLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.+++.+...||+|.+|..|.-.
T Consensus 171 ~la~e~~~~gi~v~~v~pG~v~ 192 (253)
T PRK08993 171 LMANEWAKHNINVNAIAPGYMA 192 (253)
T ss_pred HHHHHhhhhCeEEEEEeeCccc
Confidence 4566677789999999999754
No 212
>PRK07308 flavodoxin; Validated
Probab=33.02 E-value=2e+02 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|.|+.+|..+.+++-...+++.|++.|+.+.+..+..
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~ 40 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTT 40 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 34555567666567777788888888888887766644
No 213
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.98 E-value=2.3e+02 Score=23.51 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
...++.+.++.+|+.|++|-.|. ... .|..+.+.. |.+++.||.+.
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT--~~~----~l~~~~~~~------~~~~~~~p~~~ 100 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAIT--SGG----KLLEMAREH------GVPVIIIPKGL 100 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe--CCc----hHHHHHHHc------CCcEEECCCCC
Confidence 46678888999999998654444 322 266665542 46888888854
No 214
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=32.79 E-value=2.8e+02 Score=26.61 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=23.4
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.++|+|+|.-. ..+.+..+.+.+++..+++.+||=|..
T Consensus 195 ~~~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~~ 232 (351)
T cd03804 195 EDYYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGPE 232 (351)
T ss_pred CCEEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECChh
Confidence 45678887644 334444455555555588888887754
No 215
>PRK05723 flavodoxin; Provisional
Probab=32.38 E-value=57 Score=29.09 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=28.8
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
++|.||.||-.+..+.-...++++|+..++.+.++.
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 378899999766667777888999999999887754
No 216
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=31.81 E-value=3.3e+02 Score=26.58 Aligned_cols=55 Identities=27% Similarity=0.339 Sum_probs=37.1
Q ss_pred CccEEEEEEcCCCCCC-hHHHHHHHHHHHhCCcEEEEEEecCC-cchHHHHHHHHHhh
Q psy14660 105 HKMRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEE-VVNTELLNTFISTL 160 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d-~~~l~~lakkLKk~~I~VdiIgfG~e-~~n~~kL~~fi~~v 160 (375)
.+.++|+|+| +.+.. .-.+.++|..+++.|-+|-+|..-.- ....+-|..+++..
T Consensus 70 ~~~~vi~l~G-~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 70 NKPNVILFVG-VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CCCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 3468999996 44444 44578899999999999988875431 11246677676653
No 217
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.77 E-value=1e+02 Score=23.24 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
++|+|.| -+.+++..+.+.+|+.||.+.+-++=++....=.+..++
T Consensus 2 ~~ll~~g----~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt~~~L~ 47 (58)
T PF12646_consen 2 EFLLFSG----FSGEELDKFLDALRKAGIPIPLKAVLTPTNINWTLKDLL 47 (58)
T ss_pred CEEEECC----CCHHHHHHHHHHHHHcCCCcceEEEECCCcccCcHHHHH
Confidence 4666743 368889999999999999888777777654333333333
No 218
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=31.66 E-value=1.6e+02 Score=25.58 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCChHH-HHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 109 IIAFVGSPVDLEERE-LTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 109 IIvfvgSp~~~d~~~-l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
+|+|.|-+ +..... +..+++.|.+.|..|.++.+-......+.+..+
T Consensus 2 ~I~ieG~~-GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~ 49 (200)
T cd01672 2 FIVFEGID-GAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIREL 49 (200)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHH
Confidence 56666543 334333 445678888888887776654432223444444
No 219
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.39 E-value=66 Score=27.24 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
..+||+. ..+.+.....++++.+|+.+.+|-+|.
T Consensus 63 ~~vi~is-~~g~t~~~~~~~~~~~~~~~~~vi~it 96 (153)
T cd05009 63 TPVIFLA-PEDRLEEKLESLIKEVKARGAKVIVIT 96 (153)
T ss_pred CcEEEEe-cCChhHHHHHHHHHHHHHcCCEEEEEe
Confidence 3444443 223345568889999999988665553
No 220
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=31.35 E-value=1.3e+02 Score=24.19 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCCC--hHHHHHHHHHHHhCC---cEEEEEEecCCcc
Q psy14660 108 RIIAFVGSPVDLE--ERELTKLAKRLKKEK---VNVDIVSFGEEVV 148 (375)
Q Consensus 108 RIIvfvgSp~~~d--~~~l~~lakkLKk~~---I~VdiIgfG~e~~ 148 (375)
++++++.++...+ ......++..+...+ ..|.|+-+|....
T Consensus 2 ~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~ 47 (122)
T PF02635_consen 2 KVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVK 47 (122)
T ss_dssp EEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGG
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHH
Confidence 4555555443333 466677788888888 9999999998764
No 221
>PRK11914 diacylglycerol kinase; Reviewed
Probab=31.17 E-value=5e+02 Score=25.21 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=36.0
Q ss_pred ccEEEEEEcCCCCC---ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCc-hhh
Q psy14660 106 KMRIIAFVGSPVDL---EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPH-LSD 181 (375)
Q Consensus 106 ~~RIIvfvgSp~~~---d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~-Lsd 181 (375)
.+|+++++ -|... ..+...++.+.|++.++.+.++-- +.. ....+++...-.. +.-+|+|--|.- +.+
T Consensus 8 ~~~~~iI~-NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t-~~~---~~~~~~a~~~~~~---~~d~vvv~GGDGTi~e 79 (306)
T PRK11914 8 IGKVTVLT-NPLSGHGAAPHAAERAIARLHHRGVDVVEIVG-TDA---HDARHLVAAALAK---GTDALVVVGGDGVISN 79 (306)
T ss_pred CceEEEEE-CCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe-CCH---HHHHHHHHHHHhc---CCCEEEEECCchHHHH
Confidence 35666655 44432 234556777888888887766422 221 2233333332211 233555656663 665
Q ss_pred Hhh
Q psy14660 182 ALI 184 (375)
Q Consensus 182 ~l~ 184 (375)
++-
T Consensus 80 vv~ 82 (306)
T PRK11914 80 ALQ 82 (306)
T ss_pred HhH
Confidence 553
No 222
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=31.12 E-value=5.3e+02 Score=26.97 Aligned_cols=134 Identities=19% Similarity=0.240 Sum_probs=72.2
Q ss_pred ceEEEE-EeCCccccCCCCCCCHHHHHHHHHHHHH---HhhccCCCCCcEEEEEecCc--eeEEecCCCCHHHHHHhhcc
Q psy14660 4 ESTMIC-VDNSDFMRNGDFLPTRLQAQQDAVNLVC---HSKTRSNPENNVGLLAMADS--VEVLATLTSDVGRILSKLHQ 77 (375)
Q Consensus 4 EaivI~-lDnSesMrngD~~PsRL~Aq~~Av~~~v---~~k~~~NPe~~VGLVt~ag~--a~vl~pLT~D~~~Il~~L~~ 77 (375)
.|+||| .|+|.||.. .+|+.++.|+ -.|+..+. .+|=++-++.. |.-+.. .. ..+
T Consensus 202 ~AV~fc~MDvSGSM~~---------~~K~lak~ff~~ly~FL~~~Y-~~VeivFI~H~t~AkEVdE-----ee---FF~- 262 (371)
T TIGR02877 202 NAVVIAMMDTSGSMGQ---------FKKYIARSFFFWMVKFLRTKY-ENVEICFISHHTEAKEVTE-----EE---FFH- 262 (371)
T ss_pred cEEEEEEEeCCCCCCH---------HHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecCeeEEcCH-----HH---hcc-
Confidence 467776 599999974 3444444332 22334444 47777777753 332221 11 122
Q ss_pred cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC---CC-hHHHHHHHHHHHhCCcEEEEEEecCCcc---hH
Q psy14660 78 VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---LE-ERELTKLAKRLKKEKVNVDIVSFGEEVV---NT 150 (375)
Q Consensus 78 l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---~d-~~~l~~lakkLKk~~I~VdiIgfG~e~~---n~ 150 (375)
..-.|+|-...|+++|+..++.|-+... =-|=+|=.|+.. .| +.+..-+.+.|.. |.-+|+|+-.. -.
T Consensus 263 ~~EsGGT~vSSA~~l~~eII~~rYpp~~-wNIY~f~aSDGDNw~~D~~~c~~ll~~llp~----~~~f~Y~Ei~~~~~~~ 337 (371)
T TIGR02877 263 KGESGGTYCSSGYKKALEIIDERYNPAR-YNIYAFHFSDGDNLTSDNERAVKLVRKLLEV----CNLFGYGEIMPYGYSN 337 (371)
T ss_pred cCCCCCeEehHHHHHHHHHHHhhCChhh-CeeEEEEcccCCCccCCcHHHHHHHHHHHHh----hheEEEEEecCCCCcc
Confidence 2345889999999999998887743322 345555555443 33 4444334443333 44466665332 13
Q ss_pred HHHHHHHHhhC
Q psy14660 151 ELLNTFISTLN 161 (375)
Q Consensus 151 ~kL~~fi~~vn 161 (375)
.....|-..|.
T Consensus 338 ~l~~~y~~~i~ 348 (371)
T TIGR02877 338 TLKNKFKNEIK 348 (371)
T ss_pred hHHHHHHhhhc
Confidence 55555533254
No 223
>PRK12742 oxidoreductase; Provisional
Probab=31.03 E-value=3.3e+02 Score=24.40 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC-Ch---------------HHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL-EE---------------RELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~-d~---------------~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+++...+.+++.++++... +.+||++ +|.... .+ .-...+++.+.+.||+|.+|.-|.-
T Consensus 105 ~n~~~~~~l~~~~~~~~~~---~g~iv~i-sS~~~~~~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~ 179 (237)
T PRK12742 105 INIHAPYHASVEAARQMPE---GGRIIII-GSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPI 179 (237)
T ss_pred HHHHHHHHHHHHHHHHHhc---CCeEEEE-eccccccCCCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcc
Confidence 4555556666666665421 2465554 443221 00 1222355666777888888887753
No 224
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=30.99 E-value=32 Score=26.96 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=16.7
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
++||++++.+. .......++.++|...+|+|+.|.
T Consensus 47 ~~Vii~~D~D~-~G~~~a~~i~~~l~~~gi~v~~v~ 81 (81)
T PF13662_consen 47 KEVIIAFDNDK-AGEKAAQKIAKKLLPLGIRVTRVA 81 (81)
T ss_dssp SEEEEEEESSH-HHHHHHHHHHHHHG----------
T ss_pred ceEEEEeCcCH-HHHHHHHHHHHHHHhhccccccCC
Confidence 57888876432 234556678888999999998873
No 225
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=30.89 E-value=93 Score=26.10 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=33.6
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc-chHHHHHHHHH
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV-VNTELLNTFIS 158 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~-~n~~kL~~fi~ 158 (375)
..|.|+..+. .-....++++.|+++||.+.+|.+-.-. ...+.|...+.
T Consensus 10 ~di~iia~G~---~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~ 59 (124)
T PF02780_consen 10 ADITIIAYGS---MVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLK 59 (124)
T ss_dssp SSEEEEEETT---HHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSH
T ss_pred CCEEEEeehH---HHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHH
Confidence 3555555432 3577889999999999999999987633 24455555443
No 226
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=30.87 E-value=2.1e+02 Score=29.07 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.7
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
|+|+.+++..... -+..+..+++.|.++|..|.||+....
T Consensus 3 ~~~~~~~~~~~~~-~~~R~~~~a~~L~~~G~~V~ii~~~~~ 42 (415)
T cd03816 3 RKRVCVLVLGDIG-RSPRMQYHALSLAKHGWKVDLVGYLET 42 (415)
T ss_pred ccEEEEEEecccC-CCHHHHHHHHHHHhcCceEEEEEecCC
Confidence 5788888764433 345578899999999999999988653
No 227
>PLN02618 tryptophan synthase, beta chain
Probab=30.67 E-value=3.5e+02 Score=28.36 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=57.5
Q ss_pred HHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc---
Q psy14660 71 ILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV--- 147 (375)
Q Consensus 71 Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~--- 147 (375)
|.-++..+.|.|...+-+++..+.++.+. .++++|+-.|+. ..-..+|--.+..|++|.|+ ++...
T Consensus 89 IylK~E~lnptGS~K~R~a~~~~l~A~~~-----g~~~vIaesgaG-----NhG~AlA~aaa~~Gl~~~I~-m~~~~~~~ 157 (410)
T PLN02618 89 IYLKREDLNHTGAHKINNAVAQALLAKRL-----GKKRIIAETGAG-----QHGVATATVCARFGLECIVY-MGAQDMER 157 (410)
T ss_pred EEEEeCCCCCccchHHHHHHHHHHHHHHc-----CCCEEEEEcCcH-----HHHHHHHHHHHHcCCcEEEE-EcCCchhh
Confidence 44445566777887777777776664322 235777776653 25566677778999998765 44432
Q ss_pred --chHHHHHHHHHhhCCCCCCCeeEEEecCCC-chhhHh
Q psy14660 148 --VNTELLNTFISTLNGKDGSGSHMVTVAVGP-HLSDAL 183 (375)
Q Consensus 148 --~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~-~Lsd~l 183 (375)
.|..+|+.| |-.++.|+.|. .|.|.+
T Consensus 158 ~~~nv~~mr~l----------GA~Vi~v~~g~~~~~dA~ 186 (410)
T PLN02618 158 QALNVFRMRLL----------GAEVRPVHSGTATLKDAT 186 (410)
T ss_pred hhhhHHHHHHC----------CCEEEEEeCCCCCHHHHH
Confidence 233345544 46888888754 466654
No 228
>PRK09267 flavodoxin FldA; Validated
Probab=30.32 E-value=1.9e+02 Score=25.49 Aligned_cols=11 Identities=27% Similarity=0.444 Sum_probs=7.4
Q ss_pred CCCCCCHHHHH
Q psy14660 207 VDPNEDPELAL 217 (375)
Q Consensus 207 vdp~~DPELa~ 217 (375)
+|++.+||+.-
T Consensus 143 ~d~~~~~~~td 153 (169)
T PRK09267 143 LDEDNQSELTD 153 (169)
T ss_pred ecCCCchhhhH
Confidence 57777777754
No 229
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=30.26 E-value=1.8e+02 Score=25.94 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=9.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHH
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLK 132 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLK 132 (375)
+||.+|..+.+++-...+++.|.
T Consensus 3 ~IiY~S~tGnTe~vA~~Ia~~l~ 25 (167)
T TIGR01752 3 GIFYGTDTGNTEGIAEKIQKELG 25 (167)
T ss_pred EEEEECCCChHHHHHHHHHHHhC
Confidence 33444433333333444444443
No 230
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=30.24 E-value=2.8e+02 Score=25.65 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=17.5
Q ss_pred HHHHHHHhCCcEEEEEEecCCc
Q psy14660 126 KLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.+++.++..||+|..|..|.-.
T Consensus 172 ~la~e~~~~gi~v~~v~Pg~v~ 193 (265)
T PRK07097 172 NIASEYGEANIQCNGIGPGYIA 193 (265)
T ss_pred HHHHHhhhcCceEEEEEecccc
Confidence 4567777789999999999743
No 231
>PRK15045 cellulose biosynthesis protein BcsE; Provisional
Probab=30.14 E-value=2.5e+02 Score=30.52 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCcc
Q psy14660 28 AQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKM 107 (375)
Q Consensus 28 Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~ 107 (375)
.+.||+-+.=+....+....+|.||++++.+..+.++..+.+.= +|..---+.=..||.--..-|.+ .-+.+.
T Consensus 31 r~~Da~~l~~Q~i~~q~~~~r~alI~~~~~~~~ll~l~~~~gp~-----~l~lf~lp~~~~al~~l~~dl~~--~~~~~~ 103 (519)
T PRK15045 31 RHEDAISLANQTIASQAETAHVAVISMDSDPAKIFQLDDSQGPE-----KIRLFSMPNHEKGLYYLPRDLQC--SIDPHN 103 (519)
T ss_pred chhhHHHHHHHHHHhCCCCCeEEEEecCCChHHhhcCcccCCCc-----eeeeeecCCCHHHHHHhhHHHhh--ccCCCC
Confidence 45555543333344566678999999988766555555432211 11100001112333322222222 123557
Q ss_pred EEEEEEcCCCC---CChHH----HHHHHHHHHhCCcEEEEEEecCCcch-HHHHHHHHHhhC
Q psy14660 108 RIIAFVGSPVD---LEERE----LTKLAKRLKKEKVNVDIVSFGEEVVN-TELLNTFISTLN 161 (375)
Q Consensus 108 RIIvfvgSp~~---~d~~~----l~~lakkLKk~~I~VdiIgfG~e~~n-~~kL~~fi~~vn 161 (375)
|.+||.+--.. -...+ +.++.+-+++.+..+-||+.|..... ...|..+...+.
T Consensus 104 ~l~il~~~~~~w~~~~~~~l~~wl~~l~~w~~~~~~tLLvI~~g~~~~~~~~~L~~~~r~l~ 165 (519)
T PRK15045 104 YLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSLLMEEYRSLF 165 (519)
T ss_pred cEEEEEccHHHhhcCCHHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhhHHHHHHhhhhcc
Confidence 88888753221 23333 44566667889999999999998753 355555544443
No 232
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=30.13 E-value=5.8e+02 Score=25.65 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=13.6
Q ss_pred cCCCCCCCHHHHHHHHhcHHH
Q psy14660 205 FGVDPNEDPELALALRVSMEE 225 (375)
Q Consensus 205 fgvdp~~DPELa~Alr~Slee 225 (375)
+|+-+....+|+-+|+--+..
T Consensus 318 ~g~~~~~~~~l~~~i~~ll~~ 338 (391)
T PRK13608 318 FGKIADTPEEAIKIVASLTNG 338 (391)
T ss_pred cEEEeCCHHHHHHHHHHHhcC
Confidence 455566667788888765543
No 233
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=30.08 E-value=4.1e+02 Score=23.89 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhC-CcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-KVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~-~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
..+..|+++|...+..... -...++-+.+.+. .+++......+++|... +|.+ |||.+.. .....+..+++.
T Consensus 17 ~~~~~~~~~a~~~~n~~~g-~~g~~~~~~~~d~-~~~~~~~~~~~~~l~~~~~v~~-iig~~~~-~~~~~~~~~~~~ 89 (299)
T cd04509 17 AFRLAGAQLAVEEINAKGG-IPGRKLELVIYDD-QSDPARALAAARRLCQQEGVDA-LVGPVSS-GVALAVAPVAEA 89 (299)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCcEEEEEEecC-CCCHHHHHHHHHHHhcccCceE-EEcCCCc-HHHHHHHHHHhh
Confidence 4566677777765544321 1123443333332 34677788888888887 8875 4454433 234445555543
No 234
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.96 E-value=1.9e+02 Score=29.93 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=46.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHH-HHHHHHhhccCCCCCcEEEEEecCce---eEEecCCCCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDA-VNLVCHSKTRSNPENNVGLLAMADSV---EVLATLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~A-v~~~v~~k~~~NPe~~VGLVt~ag~a---~vl~pLT~D~~~Il~~L~~l~~ 80 (375)
-++++||.|.||-. +..+| +..+.. . -.||.-..-||-.-..+ .-+.+. .+. =..+.-
T Consensus 263 ~i~vaVDtSGS~~d---------~ei~a~~~Ei~~-I-l~~~~~eltli~~D~~v~~~~~~r~g-~~~------~~~~~g 324 (396)
T COG3864 263 KIVVAVDTSGSMTD---------AEIDAAMTEIFD-I-LKNKNYELTLIECDNIVRRMYRVRKG-RDM------KKKLDG 324 (396)
T ss_pred heEEEEecCCCccH---------HHHHHHHHHHHH-H-HhCCCcEEEEEEecchhhhhhccCCc-ccC------CcccCC
Confidence 37899999999975 33332 333322 2 26777777776554322 212111 110 011233
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcC
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS 115 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgS 115 (375)
+|+|+|+-.++.-. +|+.. .-.|+|+++
T Consensus 325 gG~Tdf~Pvfeyle---k~~~~----~~lIyfTDG 352 (396)
T COG3864 325 GGGTDFSPVFEYLE---KNRME----CFLIYFTDG 352 (396)
T ss_pred CCCccccHHHHHHH---hhccc----ceEEEEccC
Confidence 46799999999776 55542 344555543
No 235
>PLN02235 ATP citrate (pro-S)-lyase
Probab=29.90 E-value=3.7e+02 Score=28.52 Aligned_cols=135 Identities=9% Similarity=0.125 Sum_probs=65.9
Q ss_pred hccCCCCCcEEEEEecCceeEEecCCCCHHHHHH---hh-cccCCCCCccHHHHHHHHHHHhhcc-CCCCCccEEEEEE-
Q psy14660 40 KTRSNPENNVGLLAMADSVEVLATLTSDVGRILS---KL-HQVQPNGNINFMTGIRIAHLALKHR-QGKNHKMRIIAFV- 113 (375)
Q Consensus 40 k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~---~L-~~l~~~G~~~l~~gI~vA~laLKhr-~~k~~~~RIIvfv- 113 (375)
|+--++..+||+|+-+++.. --|-|.-+..- .. .=+..+|+++-..--+.+...|... .+++.+ .|+|.+
T Consensus 263 y~~v~ldG~Ig~mvnGAGla---maTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk-~ilvnIf 338 (423)
T PLN02235 263 FTVLNPKGRIWTMVAGGGAS---VIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGR-KRALLIG 338 (423)
T ss_pred eEEeCCCCeEEEEecCcHHH---HHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCc-EEEEEEe
Confidence 33458889999999987621 11222222111 00 0124556665554444444444211 123343 444444
Q ss_pred cCCCCCCh-----HHHHHHHHHHH----hCCcEEEEEEecCCcch-HHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHh
Q psy14660 114 GSPVDLEE-----RELTKLAKRLK----KEKVNVDIVSFGEEVVN-TELLNTFISTLNGKDGSGSHMVTVAVGPHLSDAL 183 (375)
Q Consensus 114 gSp~~~d~-----~~l~~lakkLK----k~~I~VdiIgfG~e~~n-~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l 183 (375)
|+-..||. .-+.+..+.+. ..+|+|.|=--|+..+. .++|+...+. .+-.+....|..+|.|++
T Consensus 339 GGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~------~gl~i~~~~~~~~m~~a~ 412 (423)
T PLN02235 339 GGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEE------IGVPIEVYGPEATMTGIC 412 (423)
T ss_pred cccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHh------cCCcEEEeCCCCCHHHHH
Confidence 44445663 33445554443 35788866555555433 3444433222 133456666666787765
Q ss_pred h
Q psy14660 184 I 184 (375)
Q Consensus 184 ~ 184 (375)
-
T Consensus 413 ~ 413 (423)
T PLN02235 413 K 413 (423)
T ss_pred H
Confidence 3
No 236
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=29.57 E-value=3.5e+02 Score=22.96 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=36.3
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEe
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTV 173 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~v 173 (375)
+-.||++|.. ..+..=.....+.+++-||.+.++-|..... .+.|.+.|+.+|... +-|=+.|
T Consensus 31 ~Laii~vg~d-~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~-~~el~~~i~~lN~D~--~V~GIlv 93 (117)
T PF00763_consen 31 KLAIILVGDD-PASISYVRSKQKAAEKLGIEFELIELPEDIS-EEELLELIEKLNEDP--SVHGILV 93 (117)
T ss_dssp EEEEEEES---HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSS-HHHHHHHHHHHHH-T--T-SEEEE
T ss_pred EEEEEecCCC-hhHHHHHHHHHHHHHHcCCceEEEECCCCcC-HHHHHHHHHHHhCCC--CCCEEEE
Confidence 4455566541 1112223346788899999999999987654 466666778888754 4554333
No 237
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=29.44 E-value=3.1e+02 Score=29.43 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=55.3
Q ss_pred CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 83 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
...+..+..+|.+|-||-.+ -.-|+|||+ ...+|..-.+..-+-+|-|.||-=|.=+.-..+|.+|..+|-
T Consensus 202 aApldE~~~Va~~Akk~gkG----veaI~~vGD----GyddLI~G~~a~id~~vDvfVvEGgPFN~a~dRl~aFakaVa 272 (505)
T PF10113_consen 202 AAPLDEMEEVAELAKKYGKG----VEAIMHVGD----GYDDLITGLKACIDMGVDVFVVEGGPFNRAKDRLKAFAKAVA 272 (505)
T ss_pred CCCHHHHHHHHHHHHHhCCC----ceEEEEecC----ChHHHHHHHHHHHhcCCcEEEEeCCCcccchhHHHHHHHHHH
Confidence 36788999999998887433 456889986 366788878888888998888877765444689999999886
No 238
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=29.14 E-value=4.2e+02 Score=23.75 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+.-..++..+...|++..-.-..++++|| |+. ..--..+++.|.+.+.+|.+++ .+.++++.+.+.++
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVl-Ggt----G~iG~~~a~~l~~~g~~V~l~~-----R~~~~~~~l~~~l~ 73 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVL-GGT----GPVGQRAAVLLAREGARVVLVG-----RDLERAQKAADSLR 73 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEE-CCC----CHHHHHHHHHHHHCCCEEEEEc-----CCHHHHHHHHHHHH
Confidence 34456777788777643211122455555 431 1223456677777787666653 23466777766554
No 239
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=28.66 E-value=1.5e+02 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=27.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
|-++|.....+++-+.++...|.+.+|+|+.++-+
T Consensus 4 Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s 38 (75)
T cd04912 4 LNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS 38 (75)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcC
Confidence 44556666667888889999999999999988743
No 240
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=28.62 E-value=1.2e+02 Score=27.78 Aligned_cols=96 Identities=13% Similarity=0.071 Sum_probs=56.2
Q ss_pred EEEEecCceeEEecCCCCHHHHHHhhcccCCCCC-ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHH
Q psy14660 50 GLLAMADSVEVLATLTSDVGRILSKLHQVQPNGN-INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLA 128 (375)
Q Consensus 50 GLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~-~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~la 128 (375)
|||..+|....+-|+|.+..+- -+.+.|. +=+..-|.... . ....+||++++. .....+....
T Consensus 2 avIla~G~GtRl~plt~~~pK~-----ll~i~g~~pli~~~l~~l~----~----~g~~~ii~V~~~---~~~~~i~~~~ 65 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKP-----LLPIGGKYPLIDYVLENLA----N----AGIKEIIVVVNG---YKEEQIEEHL 65 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGG-----GSEETTEEEHHHHHHHHHH----H----TTCSEEEEEEET---TTHHHHHHHH
T ss_pred EEEECCCCCccCchhhhccccc-----cceecCCCcchhhhhhhhc----c----cCCceEEEEEee---cccccccccc
Confidence 6777778788899999775331 1233455 44444444333 1 123575555542 2466677777
Q ss_pred HHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 129 KRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 129 kkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+...+.++.|.+|--.+......-|......+.
T Consensus 66 ~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~ 98 (248)
T PF00483_consen 66 GSGYKFGVKIEYIVQPEPLGTAGALLQALDFIE 98 (248)
T ss_dssp TTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHT
T ss_pred cccccccccceeeecccccchhHHHHHHHHHhh
Confidence 777777788888866655555555544444444
No 241
>PRK01355 azoreductase; Reviewed
Probab=28.56 E-value=2.4e+02 Score=25.79 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCC--C--ChHHHHHHHHHHHhC--CcEEEEEEecCCcc-----h---------HHHHHHHHHhhCCCCCC
Q psy14660 107 MRIIAFVGSPVD--L--EERELTKLAKRLKKE--KVNVDIVSFGEEVV-----N---------TELLNTFISTLNGKDGS 166 (375)
Q Consensus 107 ~RIIvfvgSp~~--~--d~~~l~~lakkLKk~--~I~VdiIgfG~e~~-----n---------~~kL~~fi~~vn~~~~~ 166 (375)
+||+++.|||.. . +..-+...++.+++. +..|.++.+-.... . .+-+.++++.+...|
T Consensus 2 ~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD-- 79 (199)
T PRK01355 2 SKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVD-- 79 (199)
T ss_pred CeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCC--
Confidence 478888888862 1 123344456666663 47777777765432 0 123345556655433
Q ss_pred CeeEEEecC
Q psy14660 167 GSHMVTVAV 175 (375)
Q Consensus 167 ~Sh~v~vp~ 175 (375)
++|.+-|
T Consensus 80 --~iV~~sP 86 (199)
T PRK01355 80 --KVVISCP 86 (199)
T ss_pred --EEEEEcC
Confidence 6666666
No 242
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=28.54 E-value=38 Score=27.87 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=11.8
Q ss_pred CCCCCCHHHHHHHhhhh
Q psy14660 345 GVDPQSAEVRHALSSSA 361 (375)
Q Consensus 345 gvdp~~~~v~~al~~l~ 361 (375)
||||+|+.||.++..+.
T Consensus 51 g~~p~s~evq~l~~~~~ 67 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWM 67 (118)
T ss_dssp T--TT-HHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 79999999999987653
No 243
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=27.83 E-value=2e+02 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcch-HHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVN-TELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n-~~kL~~fi~~vn 161 (375)
.+|.+++++++ |..-+..++.+.....|...+|+|+....+ .+..+++++.++
T Consensus 16 ~~v~~~LSGGl--DSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~ 69 (269)
T cd01991 16 VPVGVLLSGGL--DSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLG 69 (269)
T ss_pred CceEEeecccH--HHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhC
Confidence 45666665544 555555666555555567777777654333 334444445443
No 244
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=27.74 E-value=3e+02 Score=26.06 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=43.4
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcch
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVN 149 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n 149 (375)
..+|.++-..+-++.... .+..+.+..+.|-|++-||.+ +-..-..+-..|+..+..|.+|++|-....
T Consensus 31 fl~~~i~~~~a~~ii~~L-l~L~~~~~~~~I~l~INSpGG-~v~~GlaIyd~m~~~~~~V~Ti~~G~AaS~ 99 (201)
T PRK14513 31 FVGTPIESQMANTIVAQL-LLLDSQNPEQEIQMYINCPGG-EVYAGLAIYDTMRYIKAPVSTICVGIAMSM 99 (201)
T ss_pred EECCEEcHHHHHHHHHHH-HHhhccCCCCCEEEEEECCCC-chhhHHHHHHHHHhcCCCEEEEEEeeehhh
Confidence 455666666555554332 222344556789999999865 444455666666777777888888876443
No 245
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=27.69 E-value=2.4e+02 Score=24.01 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=7.2
Q ss_pred CcEEEEEEecCC
Q psy14660 135 KVNVDIVSFGEE 146 (375)
Q Consensus 135 ~I~VdiIgfG~e 146 (375)
+-++.||.||..
T Consensus 34 ~d~fnii~f~~~ 45 (155)
T PF13768_consen 34 GDRFNIIAFGSS 45 (155)
T ss_pred CCEEEEEEeCCE
Confidence 346666666654
No 246
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=27.59 E-value=97 Score=26.63 Aligned_cols=32 Identities=25% Similarity=0.151 Sum_probs=24.2
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEE
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVD 139 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~Vd 139 (375)
+++|+.+|-.+.+++-...+++.|+..++.|.
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~ 33 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVD 33 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEE
Confidence 66777778655567777788899988888776
No 247
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=27.58 E-value=1.3e+02 Score=27.65 Aligned_cols=36 Identities=8% Similarity=0.261 Sum_probs=16.5
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
.+-+|..+....++..+..+.+.+...+|-+-..-|
T Consensus 32 ~l~~~~~~el~~~~~~~~~~~~aia~ADii~~smlF 67 (164)
T PF11965_consen 32 ELSVFAAAELERDPEALEECEAAIARADIIFGSMLF 67 (164)
T ss_pred EEEEEeHHHhhcChHHHHHHHHHHHhCCEEEeehhh
Confidence 444444444444444445555455555443333333
No 248
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=26.57 E-value=81 Score=28.19 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=32.1
Q ss_pred EEEEEEcCCCCCC-hHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 108 RIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 108 RIIvfvgSp~~~d-~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
..||+.||+.... -.....+++.+.+.+++|--|+||-.
T Consensus 44 d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q 83 (192)
T PF00117_consen 44 DGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQ 83 (192)
T ss_dssp SEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHH
T ss_pred CEEEECCcCCccccccccccccccccccceEEEEEeehhh
Confidence 4577788888754 67788899999999999999999854
No 249
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=26.49 E-value=2.9e+02 Score=26.80 Aligned_cols=53 Identities=13% Similarity=-0.023 Sum_probs=32.9
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhC-----CcEEEEEEecCCcc-----hHHHHHHHHHh
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKE-----KVNVDIVSFGEEVV-----NTELLNTFIST 159 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~-----~I~VdiIgfG~e~~-----n~~kL~~fi~~ 159 (375)
..+|+++|.... -+...+.++++++++. ++.+.++|=|.... ..+.|+++++.
T Consensus 211 ~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~ 274 (392)
T cd03805 211 KKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEE 274 (392)
T ss_pred ceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHH
Confidence 456777776443 2566788888888766 56666666544321 23667777665
No 250
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=26.47 E-value=1.2e+02 Score=31.27 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=0.0
Q ss_pred CCccEEEEEEc-CCC---CCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 104 NHKMRIIAFVG-SPV---DLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 104 ~~~~RIIvfvg-Sp~---~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+.++||++|+. +|. +.-+..+..+++.|++.|+.|.||+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt 98 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVT 98 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEe
No 251
>PRK00170 azoreductase; Reviewed
Probab=26.39 E-value=1.6e+02 Score=26.46 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCC-C--hHHHHHHHHHHHhC--CcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDL-E--ERELTKLAKRLKKE--KVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d--~~~l~~lakkLKk~--~I~VdiIgfG~e 146 (375)
+||+++.|||... . ..-+..+++.+++. +..|.++.+...
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~ 46 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAE 46 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4799999999764 2 23334567778887 889999988654
No 252
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=26.39 E-value=3.4e+02 Score=25.49 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=39.9
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
..+|..+-..+=++.... .+..+.+..+.|.+++-||.+ +-..-..+-..++.....|.+|+.|-.-
T Consensus 29 fl~~~i~~~~a~~ii~~L-l~l~~~~~~~~I~l~INSpGG-~v~~g~aIyd~m~~~~~~V~t~~~G~Aa 95 (196)
T PRK12551 29 FLGEPVTSDSANRIVAQL-LFLEAEDPEKDIYLYINSPGG-SVYDGLGIFDTMQHVKPDVHTVCVGLAA 95 (196)
T ss_pred EECCeecHHHHHHHHHHH-HHhhccCCCCCEEEEEeCCCc-chhhHHHHHHHHHhcCCCEEEEEEEEeh
Confidence 455666655555544432 222334445789999999865 4344455555666666677777777654
No 253
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=26.13 E-value=1.7e+02 Score=26.48 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=28.7
Q ss_pred cEEEEEEcCCCCC-C-hHH-HHHHHHHHHhCC-cEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDL-E-ERE-LTKLAKRLKKEK-VNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d-~~~-l~~lakkLKk~~-I~VdiIgfG~e 146 (375)
+||+++.+||... . ... ...+++.+++.+ ..|.++.+...
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 5888999998763 2 233 345788889999 89999999886
No 254
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=25.85 E-value=2.9e+02 Score=24.59 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCC-ChHHHH-HHHHHHH-hCCcEEEEEEecC
Q psy14660 108 RIIAFVGSPVDL-EERELT-KLAKRLK-KEKVNVDIVSFGE 145 (375)
Q Consensus 108 RIIvfvgSp~~~-d~~~l~-~lakkLK-k~~I~VdiIgfG~ 145 (375)
+|++++||+... ....+. .+++.+. +.++.|.+|.+..
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~ 41 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLAD 41 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhh
Confidence 578888888642 223333 3444444 4577777776643
No 255
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=25.80 E-value=5e+02 Score=27.10 Aligned_cols=91 Identities=24% Similarity=0.257 Sum_probs=53.0
Q ss_pred HHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc--
Q psy14660 71 ILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV-- 148 (375)
Q Consensus 71 Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~-- 148 (375)
|.-++..+.+.|...+-++|..+.++.+.. +.++|+=.++. ..-..+|--.+..|+.|.|+ +|....
T Consensus 80 IylK~EdlnptGS~K~r~al~~~l~A~~~G-----~~~vI~etgsG-----nhG~A~A~aaa~~Gl~~~I~-m~~~d~~~ 148 (402)
T PRK13028 80 IYLKREDLNHTGAHKINNCLGQALLAKRMG-----KKRLIAETGAG-----QHGVATATAAALFGLECEIY-MGEVDIER 148 (402)
T ss_pred EEEEECCCCCCcchHHHHHHHHHHHHHHcC-----CCeEEEecCcH-----HHHHHHHHHHHHcCCCEEEE-ECCCcchh
Confidence 344445566778777777887777654432 24666544443 24556666678888887765 554321
Q ss_pred ---hHHHHHHHHHhhCCCCCCCeeEEEecCCC-chhhH
Q psy14660 149 ---NTELLNTFISTLNGKDGSGSHMVTVAVGP-HLSDA 182 (375)
Q Consensus 149 ---n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~-~Lsd~ 182 (375)
|..+++.| |-.++.|++|. .+.|.
T Consensus 149 q~~nv~~mr~~----------GAeVi~v~~g~~~~~~a 176 (402)
T PRK13028 149 QHPNVFRMKLL----------GAEVVPVTRGGRTLKEA 176 (402)
T ss_pred hHHHHHHHHHc----------CCEEEEEcCCCCCHHHH
Confidence 22334433 46788887754 35443
No 256
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=25.42 E-value=2.8e+02 Score=26.55 Aligned_cols=40 Identities=10% Similarity=-0.054 Sum_probs=28.2
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.-|||.|++..........+++...+.+++|--|++|-..
T Consensus 57 dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~Q~ 96 (235)
T cd01746 57 DGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGMQL 96 (235)
T ss_pred CEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHHHH
Confidence 4577777775433334456777788899999999998754
No 257
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=25.09 E-value=9.4e+02 Score=31.51 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred eEEEEEeCCccccCCCCCC---CHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHH---HHHhhccc
Q psy14660 5 STMICVDNSDFMRNGDFLP---TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGR---ILSKLHQV 78 (375)
Q Consensus 5 aivI~lDnSesMrngD~~P---sRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~---Il~~L~~l 78 (375)
-+||.||-|.||...--.- .-|....+|+.++ --.++.||-|+-.++.+-|.-..... +...-|=.
T Consensus 4394 qvmisiddsksmses~~~~la~etl~lvtkals~l--------e~g~iav~kfge~~~~lh~fdkqfs~esg~~~f~~f~ 4465 (4600)
T COG5271 4394 QVMISIDDSKSMSESGSTVLALETLALVTKALSLL--------EVGQIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFT 4465 (4600)
T ss_pred EEEEEecccccccccCceeeehHHHHHHHHHHHHH--------hhccEEEEecCCChhhhCchhhhhcchHHHHHHHhhc
Confidence 4899999999997543221 2333344444444 25789999998888888776432211 00010100
Q ss_pred CCCCCccHHHHHHHHHHHhhc--c----CCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 79 QPNGNINFMTGIRIAHLALKH--R----QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKh--r----~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
--.-.++ -+.+|-...|- + ..+..+|--||+. +++-+|-..+.++.++...++|-+-.|-+-.
T Consensus 4466 feqs~tn---v~~l~~~s~k~f~~a~t~~h~d~~qleiiis-dgicedhdsi~kllrra~e~kvmivfvild~ 4534 (4600)
T COG5271 4466 FEQSNTN---VLALADASMKCFNYANTASHHDIRQLEIIIS-DGICEDHDSIRKLLRRAQEEKVMIVFVILDN 4534 (4600)
T ss_pred hhccccc---HHHHHHHHHHHHHHhhhhcccchheeEEEee-cCcccchHHHHHHHHHhhhcceEEEEEEecC
Confidence 0001122 22223222220 0 0113445555554 5566788889999999999998876665543
No 258
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=25.07 E-value=4.7e+02 Score=24.05 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCcEEEEEEecCC
Q psy14660 125 TKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 125 ~~lakkLKk~~I~VdiIgfG~e 146 (375)
..+++.+...||+|.+|.-|.-
T Consensus 170 ~~la~e~~~~gi~v~~v~pg~v 191 (261)
T PRK08936 170 ETLAMEYAPKGIRVNNIGPGAI 191 (261)
T ss_pred HHHHHHHhhcCeEEEEEEECcC
Confidence 3456677888999999999853
No 259
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=25.06 E-value=92 Score=31.24 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=24.4
Q ss_pred cHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 85 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 85 ~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
++.-||.+|... +.+ .--|.|+|+..... . +.+.+.|+....|.++
T Consensus 14 Hi~Pala~a~~l-~~~------g~~v~~vg~~~~~e-~------~l~~~~g~~~~~~~~~ 59 (352)
T PRK12446 14 HVTPNLAIIPYL-KED------NWDISYIGSHQGIE-K------TIIEKENIPYYSISSG 59 (352)
T ss_pred HHHHHHHHHHHH-HhC------CCEEEEEECCCccc-c------ccCcccCCcEEEEecc
Confidence 778888888753 321 12356666543211 1 1235567777666543
No 260
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=25.05 E-value=1.3e+02 Score=27.45 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+-|+|...+.-.--+.+++.+|+..|++|.+|----.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5788888876544344577899999999999999976544
No 261
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=24.99 E-value=2.2e+02 Score=29.12 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
-....+.+++|++.||.+.||.+-.-.. ..+.|.+.+.. ..++|+|..+.
T Consensus 240 v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~-------t~~vvtvEE~~ 290 (356)
T PLN02683 240 VGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRK-------TNRLVTVEEGW 290 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhh-------cCeEEEEeCCC
Confidence 4456677889999999999999988543 45666666553 23788887754
No 262
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=24.92 E-value=1.2e+02 Score=31.05 Aligned_cols=51 Identities=10% Similarity=0.217 Sum_probs=36.6
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHH--hCCcEEEEEEecCCcchHHHHHHH
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLK--KEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLK--k~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
..++|+|+.+|.-+.++.-...+++.++ ..|+.|.++.+.... ..+.+..+
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~-~~~i~~~~ 298 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSD-KNDIITEV 298 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCC-HHHHHHHH
Confidence 3467888888877667777788889988 788999988886542 33444444
No 263
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=24.88 E-value=4.7e+02 Score=26.29 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCCCC----ccH--HHHHHHHHHHhhcc
Q psy14660 27 QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGN----INF--MTGIRIAHLALKHR 100 (375)
Q Consensus 27 ~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~----~~l--~~gI~vA~laLKhr 100 (375)
+.|++++-.=...|.+..|-|+|=|.--.|. +--.-+...+..+.-.|- .+- ...|-.-..-||.+
T Consensus 66 d~qk~~L~~NT~~F~~G~pANnVLLwGaRGt--------GKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~ 137 (287)
T COG2607 66 DRQKEALVRNTEQFAEGLPANNVLLWGARGT--------GKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRAR 137 (287)
T ss_pred hHHHHHHHHHHHHHHcCCcccceEEecCCCC--------ChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcC
Confidence 4688887777777788899999877666552 111222222222221110 111 11122222334554
Q ss_pred CCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCc---EEEEEEecCC
Q psy14660 101 QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKV---NVDIVSFGEE 146 (375)
Q Consensus 101 ~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I---~VdiIgfG~e 146 (375)
+ +|.|||+++-.=+...+.++..|.+-.-+| +=.||-+.+.
T Consensus 138 ~-----~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 138 P-----EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred C-----ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 4 789999755433445556666666655543 3345555544
No 264
>PF13362 Toprim_3: Toprim domain
Probab=24.66 E-value=2.3e+02 Score=22.59 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=28.9
Q ss_pred CccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 105 HKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 105 ~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
..++|||+.+.+.. ...+...++++++++.|+.+.++--+.
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p~~ 81 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEPGP 81 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 44678777754332 135667888999999999998887743
No 265
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=24.62 E-value=2.1e+02 Score=23.02 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=39.0
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-CC---hHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-LE---ERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-~d---~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.+.|..++.++=.+-...+...... ..+.+|+ =-+.+. .| -..+..+.+++++.|+.+.++|+-...
T Consensus 15 ~l~G~L~~~~a~~~~~~l~~~~~~~-~~~~vvl-Dls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~g~~~~v 85 (109)
T cd07041 15 PLIGDLDDERAEQLQERLLEAISRR-RARGVII-DLTGVPVIDSAVARHLLRLARALRLLGARTILTGIRPEV 85 (109)
T ss_pred eeeeeECHHHHHHHHHHHHHHHHHc-CCCEEEE-ECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 3456677777655433222222111 2234444 334443 23 456778899999999999999986543
No 266
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=24.24 E-value=2.4e+02 Score=25.21 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=32.1
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.++|.|++.||.+ +-.....+...++..++.|.+++.|-..
T Consensus 46 ~~~i~i~INSpGG-~v~~g~~i~~~i~~~~~~v~t~~~G~aa 86 (182)
T PF00574_consen 46 NKPINIYINSPGG-DVDAGLAIYDAIRSSKAPVTTVVLGLAA 86 (182)
T ss_dssp SSEEEEEEEECEB-CHHHHHHHHHHHHHSSSEEEEEEEEEEE
T ss_pred CceEEEEEcCCCC-ccHHHHHHHHHHHhcCCCeEEEEeCccc
Confidence 3789999988854 5666777888888888898888888654
No 267
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.18 E-value=1.5e+02 Score=22.02 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=25.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||.|.+.+ .++.+.++.+.|.++||.|.-+.
T Consensus 2 ~ri~v~v~d----~pG~La~v~~~l~~~~inI~~i~ 33 (66)
T cd04908 2 KQLSVFLEN----KPGRLAAVTEILSEAGINIRALS 33 (66)
T ss_pred EEEEEEEcC----CCChHHHHHHHHHHCCCCEEEEE
Confidence 477777643 58899999999999999885444
No 268
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=24.17 E-value=3.9e+02 Score=22.09 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCC--C--ChHHHHHHHHHHHhCC---cEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVD--L--EERELTKLAKRLKKEK---VNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~--~--d~~~l~~lakkLKk~~---I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
-.+|+|.++... | .-..+.++.+++++++ |.|-.|++-......+.+.+|++..+
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~ 85 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG 85 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC
Confidence 356666655432 2 1334556677777764 65555555433345688899988754
No 269
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=24.08 E-value=38 Score=26.42 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=9.4
Q ss_pred CCCCCCHHHHHHH
Q psy14660 345 GVDPQSAEVRHAL 357 (375)
Q Consensus 345 gvdp~~~~v~~al 357 (375)
+.||| +++|.+|
T Consensus 32 nMDpn-ea~qrLL 43 (60)
T PF06972_consen 32 NMDPN-EAVQRLL 43 (60)
T ss_pred CCCHH-HHHHHHH
Confidence 67887 7888877
No 270
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.98 E-value=5.1e+02 Score=22.98 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=52.6
Q ss_pred CCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHH
Q psy14660 46 ENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELT 125 (375)
Q Consensus 46 e~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~ 125 (375)
-+.++++.|-.++.+-|+---++... ....+...++..-++.-.. + +.. -.-|+|+|+. .....+.
T Consensus 13 p~~~~~~vfl~GCnlrC~~C~n~~~~-----~~~~g~~lt~eel~~~I~~-~--~~~----~~gVt~SGGE--l~~~~l~ 78 (147)
T TIGR02826 13 PNEYSLAFYITGCPLGCKGCHSPESW-----HLSEGTKLTPEYLTKTLDK-Y--RSL----ISCVLFLGGE--WNREALL 78 (147)
T ss_pred CCCEEEEEEeCCCCCCCCCCCChHHc-----CCCCCcCCCHHHHHHHHHH-h--CCC----CCEEEEechh--cCHHHHH
Confidence 35788888888887888777665322 1111223555544444221 1 111 1358999887 5677899
Q ss_pred HHHHHHHhCCcEEEEEE
Q psy14660 126 KLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIg 142 (375)
.+++.+|+.|+++.+..
T Consensus 79 ~ll~~lk~~Gl~i~l~T 95 (147)
T TIGR02826 79 SLLKIFKEKGLKTCLYT 95 (147)
T ss_pred HHHHHHHHCCCCEEEEC
Confidence 99999999998887765
No 271
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.96 E-value=1.8e+02 Score=31.17 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=39.5
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
+-.||+|.|+--..+...+...|+.|.+.++++-||--|.... .+.++++..
T Consensus 120 ~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~a-~~~V~~il~ 171 (463)
T TIGR01319 120 NLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVAGNKDI-QDEVQEIFD 171 (463)
T ss_pred CCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEeCCHHH-HHHHHHHHh
Confidence 3579999987666678888999999999999999998887643 344444433
No 272
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=23.95 E-value=1.7e+02 Score=21.60 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+|-++|......++-+.++-+.|.+.||+|.-++
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEE
Confidence 5677888887788888899999999999996544
No 273
>cd01025 TOPRIM_recR TOPRIM_recR: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in Escherichia coli RecR. RecR participates in the RecFOR pathway of homologous recombinational repair in prokaryotes. This pathway provides a single-stranded DNA molecule coated with RecA to allow invasion of a homologous molecule. The RecFOR system directs the loading of RecA onto gapped DNA coated with SSB protein. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). In RecR sequences this glutamate in the first turn of the TOPRIM domain is semiconserved, the DXD motif is not conserved.
Probab=23.88 E-value=1.5e+02 Score=25.69 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
+-|||-.+|.-+.+-...-+.+.||..+++|.=|++|=..
T Consensus 58 ~EVIlA~~pt~EGe~Ta~yi~~~l~~~~~kvsRlA~GiP~ 97 (112)
T cd01025 58 KEVILATNPTVEGEATALYIAKLLKDFGVKVTRLAQGIPV 97 (112)
T ss_pred cEEEEecCCCchHHHHHHHHHHHHhHcCCCeEEEEEcCCC
Confidence 4445555665556777778899999999999999998643
No 274
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=23.79 E-value=1.4e+02 Score=30.27 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=6.3
Q ss_pred hHHHHHHHHHhhC
Q psy14660 149 NTELLNTFISTLN 161 (375)
Q Consensus 149 n~~kL~~fi~~vn 161 (375)
.+..+++++..+.
T Consensus 218 Ktt~~~~l~~~l~ 230 (366)
T PRK14489 218 KTTLLEKLIPELI 230 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555444
No 275
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=23.74 E-value=1.2e+02 Score=30.31 Aligned_cols=55 Identities=20% Similarity=0.146 Sum_probs=35.7
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC---hHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE---ERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d---~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
|.--+..+.+.|+.+.. + -+ +|+-.=.... ...+.++++.|++.||+||.|||=.
T Consensus 154 G~~yi~~aF~~A~~~~P---~----a~--L~~NDy~~~~~~k~~~~~~lv~~l~~~gvpIdgIG~Q~ 211 (320)
T PF00331_consen 154 GPDYIADAFRAAREADP---N----AK--LFYNDYNIESPAKRDAYLNLVKDLKARGVPIDGIGLQS 211 (320)
T ss_dssp TTCHHHHHHHHHHHHHT---T----SE--EEEEESSTTSTHHHHHHHHHHHHHHHTTHCS-EEEEEE
T ss_pred cHhHHHHHHHHHHHhCC---C----cE--EEeccccccchHHHHHHHHHHHHHHhCCCccceechhh
Confidence 44455678888886654 1 23 4442222222 2468899999999999999999854
No 276
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=23.70 E-value=2.8e+02 Score=28.15 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
.-....+.++.|++.||+|.+|.+..--. ..+.+.+++... ..+++|.-
T Consensus 257 ~~~~a~eA~~~L~~~Gi~v~vi~~~~l~Pfp~~~i~~~l~~~-------k~VivvE~ 306 (352)
T PRK07119 257 SARIAKSAVDMAREEGIKVGLFRPITLWPFPEKALEELADKG-------KGFLSVEM 306 (352)
T ss_pred cHHHHHHHHHHHHHcCCeEEEEeeceecCCCHHHHHHHHhCC-------CEEEEEeC
Confidence 46778889999999999999999987433 456677776531 25566654
No 277
>PRK10307 putative glycosyl transferase; Provisional
Probab=23.56 E-value=2.9e+02 Score=27.46 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=31.6
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC-CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE-KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~-~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
..+|+|+|..... +-..+.++++++++. ++.+.|||=|.. .+.|+++++..+
T Consensus 229 ~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~~---~~~l~~~~~~~~ 282 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGGG---KARLEKMAQCRG 282 (412)
T ss_pred CEEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCChh---HHHHHHHHHHcC
Confidence 3577787765432 455677777777554 477777665543 356666766543
No 278
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=23.52 E-value=4.7e+02 Score=25.27 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=30.3
Q ss_pred eeEEEecC---C-C-chhh-HhhhCCcccCCCCCCC--CCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q psy14660 168 SHMVTVAV---G-P-HLSD-ALISSPIIQGEDGAGG--APGSSYEFGVDPNEDPELALALRVSMEEQR 227 (375)
Q Consensus 168 Sh~v~vp~---g-~-~Lsd-~l~sspi~~~~~~~~~--~~~~~~~fgvdp~~DPELa~Alr~Sleee~ 227 (375)
+.++..|+ | + .+-+ .....||+..+-|+.. ...+...+-++|++--+|+-+|..-++...
T Consensus 273 adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 273 LDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPA 340 (374)
T ss_pred cCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHH
Confidence 45565664 2 2 2334 4455788765533211 111112233566555579999976555433
No 279
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=23.51 E-value=1.6e+02 Score=22.76 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=30.1
Q ss_pred ccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 99 HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 99 hr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
.|+.+.....+++|+......+..++.++.+.|++.-..+.++|.
T Consensus 34 s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~~~~~~~lG~ 78 (80)
T cd04905 34 SRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRLTEFVKVLGS 78 (80)
T ss_pred EEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhCCeEEEeee
Confidence 445544455677777443333467788888999988777777763
No 280
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=23.20 E-value=3.8e+02 Score=22.05 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=48.3
Q ss_pred eeEEecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHH-HHHHH---HHh
Q psy14660 58 VEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELT-KLAKR---LKK 133 (375)
Q Consensus 58 a~vl~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~-~lakk---LKk 133 (375)
.-.+..|..++..++.+|...-- =...|+.|.+++.++.+ .....+|.+.-.. .+...+. .++.. .-.
T Consensus 7 ~v~l~~P~~~p~~l~~aL~~~~~-----~~~~V~~Ayl~~~~~~~--~~~~~li~vd~~~-~~~~~~~~~i~~~~~~~~~ 78 (108)
T PF14581_consen 7 KVLLGEPEEEPTDLLAALSEYFK-----QHKNVRAAYLALMQDED--EQPSLLIGVDFDG-EDIEEIFQEIGRAARPYLP 78 (108)
T ss_pred EEEecCCccCHHHHHHHHHHHHh-----hCccHHHhHHHHhhccC--CCceEEEEEeccC-hhHHHHHHHHHHHhhhcCC
Confidence 44577789999999999987621 11248889988887732 3344444443322 2333333 33333 334
Q ss_pred CCcEEEEEEecC
Q psy14660 134 EKVNVDIVSFGE 145 (375)
Q Consensus 134 ~~I~VdiIgfG~ 145 (375)
.+..|++|.+-.
T Consensus 79 ~~~~vd~~~~~~ 90 (108)
T PF14581_consen 79 DGWPVDFVLLDD 90 (108)
T ss_pred CCceEEEEEccC
Confidence 568899998875
No 281
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=22.96 E-value=4.4e+02 Score=28.05 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 108 RIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 108 RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
..|+|+|.-... .-..+.++..++++. ++.+.++|-|.+. +.|+++++..+
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~---~~l~~~i~~~~ 373 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEK---QKLQKIINENQ 373 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhH---HHHHHHHHHcC
Confidence 467788764432 344566666666654 6888888887653 56777776643
No 282
>PRK09526 lacI lac repressor; Reviewed
Probab=22.95 E-value=6.7e+02 Score=23.92 Aligned_cols=119 Identities=15% Similarity=0.196 Sum_probs=62.0
Q ss_pred EEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHH---HHHhhcc--cCC-
Q psy14660 7 MICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGR---ILSKLHQ--VQP- 80 (375)
Q Consensus 7 vI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~---Il~~L~~--l~~- 80 (375)
++++|......-.-+.++-..+...+++.|+.. -..+|++|. +.... +....+ +..+|.. +.+
T Consensus 147 vV~~d~~~~~~~~~V~~d~~~~~~~a~~~L~~~-----G~~~I~~l~--g~~~~----~~~~~R~~Gf~~al~~~gi~~~ 215 (342)
T PRK09526 147 CLFLDVSPQSPVNSVSFDPEDGTRLGVEHLVEL-----GHQRIALLA--GPESS----VSARLRLAGWLEYLTDYQLQPI 215 (342)
T ss_pred EEEEeccCCCCCCEEEECcHHHHHHHHHHHHHC-----CCCeEEEEe--CCCcc----ccHHHHHHHHHHHHHHcCCCcc
Confidence 566775422211123467788888899999863 245788764 21110 111222 2333332 211
Q ss_pred ---CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcE----EEEEEecCC
Q psy14660 81 ---NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVN----VDIVSFGEE 146 (375)
Q Consensus 81 ---~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~----VdiIgfG~e 146 (375)
.|..+...+.+.+...|+..+ .-. .||.. +..-...+.+.|++.|++ |.||||+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~-ai~~~-----~d~~A~g~~~al~~~g~~vP~disvig~d~~ 278 (342)
T PRK09526 216 AVREGDWSAMSGYQQTLQMLREGP----VPS-AILVA-----NDQMALGVLRALHESGLRVPGQISVIGYDDT 278 (342)
T ss_pred eEEeCCCchHHHHHHHHHHhcCCC----CCc-EEEEc-----CcHHHHHHHHHHHHcCCCCCCceEEEeeCCC
Confidence 244455566665554443211 112 33432 233355677888888885 578999764
No 283
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.93 E-value=2.6e+02 Score=24.10 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=37.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
|.|.++|. |+ ...++-+.|+.+||...+|.+....-..+.|..+++.+.
T Consensus 3 itiy~~p~-C~--t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 3 ITIYGNPN-CS--TCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred EEEEeCCC-Ch--HHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 44556663 44 467778889999999999999988777788888877755
No 284
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=22.80 E-value=3.7e+02 Score=27.27 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=48.6
Q ss_pred eEEecCCCCHHHHHHhhc-cc-CCC-CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-------CChHHHHHHH
Q psy14660 59 EVLATLTSDVGRILSKLH-QV-QPN-GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-------LEERELTKLA 128 (375)
Q Consensus 59 ~vl~pLT~D~~~Il~~L~-~l-~~~-G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-------~d~~~l~~la 128 (375)
.|.+|++.|...+...|- .+ -|. ...+...--+.+...|+... -|+||| +.+. ..-.....+.
T Consensus 100 ~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~-----vrmLII--DE~H~lLaGs~~~qr~~Ln~L 172 (302)
T PF05621_consen 100 YVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG-----VRMLII--DEFHNLLAGSYRKQREFLNAL 172 (302)
T ss_pred EEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC-----CcEEEe--echHHHhcccHHHHHHHHHHH
Confidence 567899999888876654 33 222 22333333334444455432 466665 2221 1244566677
Q ss_pred HHHHhCCcEEEEEEecCCc
Q psy14660 129 KRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 129 kkLKk~~I~VdiIgfG~e~ 147 (375)
|.| .|...|.+|+||+..
T Consensus 173 K~L-~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 173 KFL-GNELQIPIVGVGTRE 190 (302)
T ss_pred HHH-hhccCCCeEEeccHH
Confidence 776 788999999999875
No 285
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=22.73 E-value=8e+02 Score=24.72 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEe--cCCCchhhHhh
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTV--AVGPHLSDALI 184 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~v--p~g~~Lsd~l~ 184 (375)
+-.++++|+.- ...--...-.|..++-||....+-|.+.... +.|...|+.+|... +-|-+.| |==.||.+.-+
T Consensus 32 ~Lavilvgddp-aS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~-~eLl~~I~~lN~D~--~v~GIlVQlPLp~hld~~~i 107 (283)
T COG0190 32 GLAVILVGDDP-ASQVYVRSKKKAAEEIGIASELYDLPEDITE-EELLALIDELNADP--EVDGILVQLPLPKHLDEQKL 107 (283)
T ss_pred eEEEEEeCCCH-HHHHHHHHHHHHHHHcCCeeEEEeCCCcCCH-HHHHHHHHHhcCCC--CCcEEEEeCCCCCCCCHHHH
Confidence 44555555421 1111122346778899999999999876544 55555778899755 4665444 43447764444
Q ss_pred hCCcccCCC
Q psy14660 185 SSPIIQGED 193 (375)
Q Consensus 185 sspi~~~~~ 193 (375)
-+.|-..-|
T Consensus 108 l~~I~p~KD 116 (283)
T COG0190 108 LQAIDPEKD 116 (283)
T ss_pred HhhcCcCCC
Confidence 344654443
No 286
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=22.72 E-value=1.2e+02 Score=27.56 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|+|+.+|-.+.+.+-...+++.|.. |+.|+++.+..
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~ 38 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHR 38 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhh
Confidence 56667777655567767788999988 88888887654
No 287
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.48 E-value=1.9e+02 Score=21.90 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHhCCcEEEEEE
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIg 142 (375)
..++..+++++|++|+++-.|.
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4668889999999998766554
No 288
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=22.35 E-value=2.3e+02 Score=22.33 Aligned_cols=9 Identities=56% Similarity=0.722 Sum_probs=3.9
Q ss_pred cEEEEEEcC
Q psy14660 107 MRIIAFVGS 115 (375)
Q Consensus 107 ~RIIvfvgS 115 (375)
+|+|+++|.
T Consensus 41 ~~~i~V~G~ 49 (91)
T PF02875_consen 41 GRIIAVFGA 49 (91)
T ss_dssp SEEEEEEEE
T ss_pred CcEEEEEcc
Confidence 344444443
No 289
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=22.21 E-value=3.3e+02 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCcEEEEEEecCCcc-----hHHHHHHHHHhhC
Q psy14660 125 TKLAKRLKKEKVNVDIVSFGEEVV-----NTELLNTFISTLN 161 (375)
Q Consensus 125 ~~lakkLKk~~I~VdiIgfG~e~~-----n~~kL~~fi~~vn 161 (375)
..+.+..+.+||.|+.|++=+-++ .....+..|.+.+
T Consensus 158 ~~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~ 199 (294)
T cd06543 158 LNVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAE 199 (294)
T ss_pred HHHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHH
Confidence 456667799999999988633222 1344455555554
No 290
>KOG2199|consensus
Probab=22.16 E-value=34 Score=35.97 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=16.9
Q ss_pred ChHHHHHHHHHcccCCCCcc
Q psy14660 283 TEEEQIAFAMQMSMQDTQEP 302 (375)
Q Consensus 283 ~ee~~~~~a~~ms~~~~~~~ 302 (375)
.|||.|++||+||+.+....
T Consensus 164 ~EeEdiaKAi~lSL~E~~~Q 183 (462)
T KOG2199|consen 164 QEEEDIAKAIELSLKEQEKQ 183 (462)
T ss_pred ccHHHHHHHHHhhHHHHhhc
Confidence 58999999999999876543
No 291
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.10 E-value=1e+02 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
......+++++|++.|++|.+.-.+
T Consensus 13 ~~~~a~~i~~~Lr~~g~~v~~~~~~ 37 (91)
T cd00859 13 ALSEALELAEQLRDAGIKAEIDYGG 37 (91)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3456888999999999999875443
No 292
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=22.08 E-value=4.1e+02 Score=26.37 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=33.0
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhCC--cEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKEK--VNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~~--I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
.+.+|+|+|..... +...+.++++.+++.+ +.+.++|-|.. .+.|+++++..+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~ 247 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGPK---RILLEEMREKYN 247 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCch---HHHHHHHHHHhC
Confidence 35678888764332 3556778888877654 55555554432 356777777654
No 293
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=22.02 E-value=1.1e+02 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.4
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 111 AFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 111 vfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
||.+|..+.++.-...+++.|++.++.|.++.+-.-..
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~ 38 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDD 38 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCH
T ss_pred CEEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhh
Confidence 45567666568888889999999999999999977643
No 294
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=21.99 E-value=1.4e+02 Score=27.91 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=30.1
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
|++|..++--+-+.+....+|..|+..|+.|+|..+-..
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~ 40 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV 40 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh
Confidence 556665555445688888999999999999999877554
No 295
>PRK14974 cell division protein FtsY; Provisional
Probab=21.98 E-value=8.5e+02 Score=24.76 Aligned_cols=55 Identities=29% Similarity=0.225 Sum_probs=35.7
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC-cchHHHHHHHHHhh
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE-VVNTELLNTFISTL 160 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e-~~n~~kL~~fi~~v 160 (375)
+.++|+|+|-+...-.-.+.+++..|++.|.+|-+|+.-+- ..-.+.|..+.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 35789999865443355678899999999988877653211 11235666666653
No 296
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=21.96 E-value=1.2e+02 Score=29.40 Aligned_cols=13 Identities=8% Similarity=0.051 Sum_probs=8.3
Q ss_pred HHHHHHHhhhhcC
Q psy14660 351 AEVRHALSSSAEK 363 (375)
Q Consensus 351 ~~v~~al~~l~~~ 363 (375)
+++.+++..+-.+
T Consensus 312 ~~l~~~i~~ll~~ 324 (357)
T PRK00726 312 EKLAEKLLELLSD 324 (357)
T ss_pred HHHHHHHHHHHcC
Confidence 6777777666543
No 297
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=21.88 E-value=6.4e+02 Score=24.72 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=32.2
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhCC----cEEEEEEecCC-c-chHHHHHHHHHhhC
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKEK----VNVDIVSFGEE-V-VNTELLNTFISTLN 161 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~~----I~VdiIgfG~e-~-~n~~kL~~fi~~vn 161 (375)
.+.+|+|+|..... +...+.+++++|++.+ +.+-+||-+.. . ...+.|+++++..+
T Consensus 218 ~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~ 280 (405)
T TIGR03449 218 DTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELG 280 (405)
T ss_pred CCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcC
Confidence 35788888765432 3456777777776543 55555552211 1 23456777777654
No 298
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=21.77 E-value=2.5e+02 Score=29.86 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
-....+.++.|++.||.+.||.+-+-.. ..+.+.+.+.+ ..++|+|-.+.
T Consensus 352 v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~k-------t~~vvtvEE~~ 402 (464)
T PRK11892 352 MTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKK-------TNRLVTVEEGW 402 (464)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHh-------cCeEEEEeCCC
Confidence 4467788999999999999999988543 34555544443 23788888765
No 299
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=21.76 E-value=1.8e+02 Score=26.38 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=22.4
Q ss_pred EEEEEcCCC--CCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 109 IIAFVGSPV--DLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 109 IIvfvgSp~--~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
|++++.+.. ++....+..+++.|++.|..|.+++....
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 444443333 22355566677777777777777766554
No 300
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=21.74 E-value=1e+02 Score=31.84 Aligned_cols=40 Identities=23% Similarity=0.178 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
+||+++++.. ..+-.-...+++.|+++|..|++++.+.-.
T Consensus 2 mkil~~~~~~-~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~ 41 (406)
T COG1819 2 MKILFVVCGA-YGHVNPCLALGKELRRRGHEVVFASTGKFK 41 (406)
T ss_pred ceEEEEeccc-cccccchHHHHHHHHhcCCeEEEEeCHHHH
Confidence 6888777655 556666888999999999999998887543
No 301
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=21.73 E-value=2.6e+02 Score=30.30 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=27.9
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
.||+.||-++..+-+.-.+..++++ ++.+|.|-++++|+...
T Consensus 143 GQR~~Ifg~~gtGKT~lal~~I~~q-~~~dv~~V~~~IGer~~ 184 (507)
T PRK07165 143 GQRELIIGDRQTGKTHIALNTIINQ-KNTNVKCIYVAIGQKRE 184 (507)
T ss_pred CCEEEeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEccCChH
Confidence 3899999666543333334456655 67788888889998653
No 302
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=21.73 E-value=1.4e+02 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=28.0
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEE---EecCCc
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIV---SFGEEV 147 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiI---gfG~e~ 147 (375)
+-+|+|+ -+..+.-.....+|+.|.++|+.|..+ |.|...
T Consensus 16 k~~v~i~-HG~~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 16 KAVVVIV-HGFGEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CEEEEEe-CCcHHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 4555555 444556667889999999999887654 667654
No 303
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=21.70 E-value=3.2e+02 Score=27.79 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=47.7
Q ss_pred CCCCCccHHHHHHHHH--HHhhccCCCCCccEEEEEEcCCCCC---ChHHH----HHHHHHHHhCCcEEEEEEecCCcch
Q psy14660 79 QPNGNINFMTGIRIAH--LALKHRQGKNHKMRIIAFVGSPVDL---EEREL----TKLAKRLKKEKVNVDIVSFGEEVVN 149 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~--laLKhr~~k~~~~RIIvfvgSp~~~---d~~~l----~~lakkLKk~~I~VdiIgfG~e~~n 149 (375)
...|..+=.+.-.+|- .++||+- ...++|+-||||++... .+..+ .-+.|.|.+.|+++. |.|.-...
T Consensus 133 pi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~l-isfSRRTp- 209 (329)
T COG3660 133 PINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFL-ISFSRRTP- 209 (329)
T ss_pred eccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEE-EEeecCCc-
Confidence 3446666555555544 4678874 56889999999998752 22222 235666777888875 67765443
Q ss_pred HHHHHHHHHh
Q psy14660 150 TELLNTFIST 159 (375)
Q Consensus 150 ~~kL~~fi~~ 159 (375)
+.++..+.+
T Consensus 210 -~~~~s~l~~ 218 (329)
T COG3660 210 -DTVKSILKN 218 (329)
T ss_pred -HHHHHHHHh
Confidence 455555544
No 304
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=21.47 E-value=1.5e+02 Score=27.68 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=23.2
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
.-|+++|.-. .+.++..++|++|...+|.+-.|+
T Consensus 82 ~DRVllfs~~---~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 82 TDRVLLFSPF---STDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp T-EEEEEES----S--HHHHHHHHHHHHHT--EEEEE
T ss_pred cceEEEEeCC---CCCHHHHHHHHHHHHCCCCEEEEE
Confidence 3588888633 256679999999999999887777
No 305
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=21.46 E-value=2.8e+02 Score=26.69 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=40.5
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
-.+|.++-..+=++....| +..+.+..+.|.+++-||.+ +-..-..+-..++.....|.+|+.|-.-.
T Consensus 58 fl~~~Idd~~a~~i~aqLl-~L~~~~~~~~I~lyINSpGG-sv~aGlaIyd~m~~~~~~V~tv~~G~AAS 125 (221)
T PRK14514 58 FLGTQIDDYTANTIQAQLL-YLDSVDPGKDISIYINSPGG-SVYAGLGIYDTMQFISSDVATICTGMAAS 125 (221)
T ss_pred EECCEEcHHHHHHHHHHHH-HHhccCCCCCEEEEEECCCc-chhhHHHHHHHHHhcCCCEEEEEEEEehh
Confidence 4567666665554444322 22233344789999988865 33334455566677777788888776543
No 306
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=21.41 E-value=1.3e+02 Score=28.90 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=8.1
Q ss_pred HhCCcEEEEEEec
Q psy14660 132 KKEKVNVDIVSFG 144 (375)
Q Consensus 132 Kk~~I~VdiIgfG 144 (375)
++.++++..|.++
T Consensus 46 ~~~g~~~~~i~~~ 58 (348)
T TIGR01133 46 PKAGIEFYFIPVG 58 (348)
T ss_pred ccCCCceEEEecc
Confidence 3457777766654
No 307
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=21.37 E-value=2.9e+02 Score=27.27 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHhCCcEEE---EEEe-cCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 120 EERELTKLAKRLKKEKVNVD---IVSF-GEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~Vd---iIgf-G~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
+..+..+.++++++.||.|. |+|+ |+..+.....-.++..+.- +.-.-|.+++-||..|.+...
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~l~~-d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSLLDV-DGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHhcCC-CEEEEEEEEecCCCHHHHHHH
Confidence 45678889999999998775 3455 3333333333445555443 233567788888887777544
No 308
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=21.32 E-value=1.8e+02 Score=27.62 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=31.9
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEEecC-CcchHHHHHHHHHhhC
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGE-EVVNTELLNTFISTLN 161 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIgfG~-e~~n~~kL~~fi~~vn 161 (375)
...++||.+++++ |..-+..++.++.. .+|...++.+|. .....+..+.+++.++
T Consensus 22 ~~~~vvv~lSGGi--DSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lg 78 (248)
T cd00553 22 GFKGVVLGLSGGI--DSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALG 78 (248)
T ss_pred CCCCEEEeCCCcH--HHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhC
Confidence 3457777776644 66666667766543 455444444442 2234566777777765
No 309
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=21.25 E-value=3.5e+02 Score=25.49 Aligned_cols=70 Identities=13% Similarity=0.138 Sum_probs=41.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec----CCcchHHHHHHHHHhhCCCC-CCCeeEEEecCCCchhh
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG----EEVVNTELLNTFISTLNGKD-GSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG----~e~~n~~kL~~fi~~vn~~~-~~~Sh~v~vp~g~~Lsd 181 (375)
.|+|+++++++ |. --.+..+.|.|+.|+.|-|= +.....++.+.+++.++... +....|++|+-++.+.+
T Consensus 4 gk~l~LlSGGi--DS---pVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~ 78 (197)
T PF02568_consen 4 GKALALLSGGI--DS---PVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKE 78 (197)
T ss_dssp -EEEEE-SSCC--HH---HHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHH
T ss_pred ceEEEEecCCc--cH---HHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHH
Confidence 57777776654 22 23455678899999999994 23334566777777766432 12567777866654444
No 310
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=21.14 E-value=2.7e+02 Score=24.91 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=24.3
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
..+.|+|.+.||.+ +......+...++..+..|.++..|-.
T Consensus 29 ~~~~i~l~InSpGG-~v~~~~~i~~~i~~~~~~v~~~~~g~a 69 (162)
T cd07013 29 PEKDIYLYINSPGG-DVFAGMAIYDTIKFIKADVVTIIDGLA 69 (162)
T ss_pred CCCCEEEEEECCCC-cHHHHHHHHHHHHhcCCCceEEEEeeh
Confidence 34789999999976 333344444444544445566655543
No 311
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=21.13 E-value=2.8e+02 Score=25.27 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=27.6
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEecCCcch---HHHHHHHHH
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFGEEVVN---TELLNTFIS 158 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG~e~~n---~~kL~~fi~ 158 (375)
|+.++.+.++.++..||..-.|++==...| ..+..+++.
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~ 173 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIR 173 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHH
Confidence 688899999999999988877776443333 344455544
No 312
>PRK07667 uridine kinase; Provisional
Probab=21.09 E-value=3e+02 Score=25.01 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCCChHHH-HHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEEREL-TKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l-~~lakkLKk~~I~VdiIgfG~ 145 (375)
+|+||.++++.+.....+ ..+++.|++.++.+.+|.+-.
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 456666666655555554 456788888888888777643
No 313
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=21.02 E-value=1.3e+02 Score=28.45 Aligned_cols=66 Identities=23% Similarity=0.377 Sum_probs=41.5
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHH-HhCCcEEEEEE-----ecCCcchHHHH--HHHHHhhCCCCCCCeeEEEecC
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRL-KKEKVNVDIVS-----FGEEVVNTELL--NTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkL-Kk~~I~VdiIg-----fG~e~~n~~kL--~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
...++.|++|.- -..-+..+++++ +..|+.|.|+. ||..+..+-.| +.|++++.+++ ....+.||.
T Consensus 96 ~~~~v~ivTG~l---a~~~l~~~~~~l~~~~~~~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~~~~--~~d~lllP~ 169 (204)
T PF04459_consen 96 KPRRVTIVTGVL---AYPFLKPLVEKLNRIPGLEVEVVPVKNRFFGGTITVAGLLTGQDIIEQLKGKE--LGDLLLLPD 169 (204)
T ss_pred CCeeEEEEeeHH---HHHHHHHHHHHHhccCCCeEEEEEeecCCCCCCeEEeeCccHHHHHHHhCcCC--CCCEEEECH
Confidence 345666666532 366688888888 55577777774 67666555555 66777777543 225555553
No 314
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=21.02 E-value=1.3e+02 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=23.4
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||++.+++.+ .--....+.+.|++.|..|++|-
T Consensus 2 k~Ill~vtGsi--aa~~~~~li~~L~~~g~~V~vv~ 35 (182)
T PRK07313 2 KNILLAVSGSI--AAYKAADLTSQLTKRGYQVTVLM 35 (182)
T ss_pred CEEEEEEeChH--HHHHHHHHHHHHHHCCCEEEEEE
Confidence 57777776533 23336678888899898888665
No 315
>PRK10307 putative glycosyl transferase; Provisional
Probab=20.98 E-value=5.9e+02 Score=25.24 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=57.4
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
|...-..++.....+++.... .. .--++++|++. ....+.++++.+.-. .|...|+-.. +.+..+...
T Consensus 236 G~l~~~kg~~~li~a~~~l~~-~~-~~~l~ivG~g~--~~~~l~~~~~~~~l~--~v~f~G~~~~----~~~~~~~~~-- 303 (412)
T PRK10307 236 GNIGEKQGLELVIDAARRLRD-RP-DLIFVICGQGG--GKARLEKMAQCRGLP--NVHFLPLQPY----DRLPALLKM-- 303 (412)
T ss_pred CccccccCHHHHHHHHHHhcc-CC-CeEEEEECCCh--hHHHHHHHHHHcCCC--ceEEeCCCCH----HHHHHHHHh--
Confidence 444444455544444443221 11 12345667532 345566666443322 2455555432 344444332
Q ss_pred CCCCCCeeEEEecCC--------C-chhh-HhhhCCcccCCCCCCC----CCCCCCccCCCCCCCHHHHHHHHhcHHHH
Q psy14660 162 GKDGSGSHMVTVAVG--------P-HLSD-ALISSPIIQGEDGAGG----APGSSYEFGVDPNEDPELALALRVSMEEQ 226 (375)
Q Consensus 162 ~~~~~~Sh~v~vp~g--------~-~Lsd-~l~sspi~~~~~~~~~----~~~~~~~fgvdp~~DPELa~Alr~Sleee 226 (375)
+++..+|.- | .+.+ .....||+.-..++.+ ..+.+ +=|+|.+--+||-||+.-++..
T Consensus 304 ------aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~~~G--~~~~~~d~~~la~~i~~l~~~~ 374 (412)
T PRK10307 304 ------ADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVEGIG--VCVEPESVEALVAAIAALARQA 374 (412)
T ss_pred ------cCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHhCCc--EEeCCCCHHHHHHHHHHHHhCH
Confidence 344444331 1 1344 3455688765433211 11122 2256665567999998766543
No 316
>PRK04155 chaperone protein HchA; Provisional
Probab=20.95 E-value=4.6e+02 Score=26.04 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
.+.++..-...|++.|+.|+|++...
T Consensus 75 ~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 75 HPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 46678888999999999999999843
No 317
>PRK12743 oxidoreductase; Provisional
Probab=20.80 E-value=6.6e+02 Score=23.04 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=15.5
Q ss_pred HHHHHHHhCCcEEEEEEecCC
Q psy14660 126 KLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~e 146 (375)
.+++.+...||+|.+|.-|.-
T Consensus 166 ~la~~~~~~~i~v~~v~Pg~~ 186 (256)
T PRK12743 166 AMALELVEHGILVNAVAPGAI 186 (256)
T ss_pred HHHHHhhhhCeEEEEEEeCCc
Confidence 346666778899999988853
No 318
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=20.63 E-value=3.2e+02 Score=25.67 Aligned_cols=68 Identities=10% Similarity=0.077 Sum_probs=42.6
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV 148 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~ 148 (375)
-.+|.++-..+=++....|.. ...+..+.|.+++-||.+ +-..-..+-..++..+..|.+|++|-...
T Consensus 34 fl~~~i~~~~a~~ii~~ll~L-~~~~~~~~I~l~INSpGG-~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS 101 (200)
T CHL00028 34 FLGQEVDDEIANQLIGLMVYL-SIEDDTKDLYLFINSPGG-SVISGLAIYDTMQFVKPDVHTICLGLAAS 101 (200)
T ss_pred EECCeecHHHHHHHHHHHHHH-hccCCCCCEEEEEeCCCc-chhhHHHHHHHHHhcCCCEEEEEEEehHH
Confidence 455666555444443333321 122344789999999865 44445566677788888899999887643
No 319
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.62 E-value=5.6e+02 Score=25.17 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=39.3
Q ss_pred EEcCCCCC------ChHHHHHHHHHHHh------CCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCch
Q psy14660 112 FVGSPVDL------EERELTKLAKRLKK------EKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHL 179 (375)
Q Consensus 112 fvgSp~~~------d~~~l~~lakkLKk------~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~L 179 (375)
-+|.|+-. ...+...+++.|.+ .+=.|-.+|=|+.......+.+|-..+...+..+-|+-+|--.|.|
T Consensus 106 ~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~ 185 (262)
T PF06180_consen 106 VLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSL 185 (262)
T ss_dssp EEE--SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBH
T ss_pred EecccccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCH
Confidence 44667654 47777777777754 3556777788886654444444444444433346777777666667
Q ss_pred hhHh
Q psy14660 180 SDAL 183 (375)
Q Consensus 180 sd~l 183 (375)
.|+|
T Consensus 186 ~~vi 189 (262)
T PF06180_consen 186 EDVI 189 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 320
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.54 E-value=6.5e+02 Score=23.21 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=16.0
Q ss_pred HHHHHHHhCCcEEEEEEecCC
Q psy14660 126 KLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~e 146 (375)
.++..++..||+|..|..|--
T Consensus 181 ~la~~~~~~~i~v~~v~PG~i 201 (256)
T PRK12859 181 SLAAEVAHLGITVNAINPGPT 201 (256)
T ss_pred HHHHHhhhhCeEEEEEEEccc
Confidence 346667778899999988873
No 321
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=20.48 E-value=1.6e+02 Score=24.33 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=31.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 110 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 110 IvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
|+|++.+...|-.=+..+++.|++.|-.|. |++.....+.++ . .|-.++.++..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~---~~~~~~~~~~v~----~------~Gl~~~~~~~~ 54 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVR---LATPPDFRERVE----A------AGLEFVPIPGD 54 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEE---EEETGGGHHHHH----H------TT-EEEESSSC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEE---Eeecccceeccc----c------cCceEEEecCC
Confidence 445544433344446789999999999888 444433333333 2 26788888776
No 322
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=20.44 E-value=1.9e+02 Score=26.29 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=25.8
Q ss_pred EEEEEEcCCC-CCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 108 RIIAFVGSPV-DLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 108 RIIvfvgSp~-~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
||++++.+.. ++....+..+++.|.+.|..|.++.+...
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 4555554432 23456677788888888888888877654
No 323
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=20.38 E-value=2.4e+02 Score=28.56 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=45.8
Q ss_pred EecCC-CCHHHHHHhhcccCC--CCC--ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCC
Q psy14660 61 LATLT-SDVGRILSKLHQVQP--NGN--INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 135 (375)
Q Consensus 61 l~pLT-~D~~~Il~~L~~l~~--~G~--~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~ 135 (375)
++||+ .|...|...|..--| .+. -+++.|=+-=+.|+|..- ..-.++|.+||+++.+...|..+| ++.+
T Consensus 165 QTTls~ddt~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la---~~~Dl~iVVG~~nSSNs~rL~eiA---~~~g 238 (294)
T COG0761 165 QTTLSVDDTAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELA---PEVDLVIVVGSKNSSNSNRLAEIA---KRHG 238 (294)
T ss_pred eeecCHHHHHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHh---hcCCEEEEECCCCCccHHHHHHHH---HHhC
Confidence 44555 456667777665544 221 245666555566665543 225788888888877788888888 4445
Q ss_pred cEEEEEEe
Q psy14660 136 VNVDIVSF 143 (375)
Q Consensus 136 I~VdiIgf 143 (375)
..-+.|.=
T Consensus 239 ~~aylId~ 246 (294)
T COG0761 239 KPAYLIDD 246 (294)
T ss_pred CCeEEeCC
Confidence 44444433
No 324
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=20.37 E-value=2.2e+02 Score=26.62 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
-|.|+|+.-.....-+..+++.+|+.|+++.+..=|......+.++.+..
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~ 122 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLD 122 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHH
Confidence 47787653334555567899999999998766655654323355555543
No 325
>PRK06696 uridine kinase; Validated
Probab=20.30 E-value=3.2e+02 Score=25.33 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=23.1
Q ss_pred cEEEEEEcCCCCCChHHH-HHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEEREL-TKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l-~~lakkLKk~~I~VdiIg 142 (375)
.++||.++++....+..+ ..+++.|.+.|+.|.+|+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 455666666555555554 457888888887666655
No 326
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=20.26 E-value=2.8e+02 Score=26.31 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=40.9
Q ss_pred EEecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEE
Q psy14660 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKK-EKVNV 138 (375)
Q Consensus 60 vl~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~V 138 (375)
++.|+|+....+ +..+..|+++|...+...-.-+. .+|-+++.+. ..++......+++|.. .+|.+
T Consensus 6 ~~~~~sG~~a~~-----------g~~~~~g~~~a~~~~N~~ggi~G-~~i~l~~~D~-~~~~~~a~~~~~~l~~~~~v~~ 72 (343)
T PF13458_consen 6 VLVPLSGPFAPY-----------GQDFLRGAELAVDEINAAGGING-RKIELVVYDD-GGDPAQAVQAARKLIDDDGVDA 72 (343)
T ss_dssp EEE-SSSTTHHH-----------HHHHHHHHHHHHHHHHHTTEETT-EEEEEEEEE--TT-HHHHHHHHHHHHHTSTESE
T ss_pred EEECCCChhhhh-----------hHHHHHHHHHHHHHHHHhCCcCC-ccceeeeccC-CCChHHHHHHHHHhhhhcCcEE
Confidence 466777665444 24566777777765544311122 3444444432 3478888999999987 78765
Q ss_pred EEEEec
Q psy14660 139 DIVSFG 144 (375)
Q Consensus 139 diIgfG 144 (375)
-+-+++
T Consensus 73 vvg~~~ 78 (343)
T PF13458_consen 73 VVGPLS 78 (343)
T ss_dssp EEESSS
T ss_pred EEecCC
Confidence 543344
No 327
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=20.21 E-value=2.6e+02 Score=30.14 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhhh
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALIS 185 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~s 185 (375)
+.|=|++|+... ....-+..+-+.++++|.+.++|.+|.- |..||..|-+ + | -.=++-+|-....--.-+.
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgki--npaKLaNF~e-I---D--~fV~vaCPr~sidd~~~F~ 353 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKP--NPAKLANFED-I---D--IFVLLGCSQSGIIDSNEFY 353 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCC--CHHHHhCCCC-C---C--EEEEccCCCcccccHhhCC
Confidence 466677776544 3566677789999999999999999975 4689987732 1 1 1233334444433223456
Q ss_pred CCccc
Q psy14660 186 SPIIQ 190 (375)
Q Consensus 186 spi~~ 190 (375)
.||++
T Consensus 354 KPVlT 358 (496)
T TIGR00272 354 RPIVT 358 (496)
T ss_pred Cceec
Confidence 68875
No 328
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=20.16 E-value=5.2e+02 Score=24.49 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhC-CcEEEEEEecC
Q psy14660 85 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-KVNVDIVSFGE 145 (375)
Q Consensus 85 ~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~-~I~VdiIgfG~ 145 (375)
.+.+|+++|...+-.+..-+. ..|.+.+.+. ..++......+++|... +|..-|.+++.
T Consensus 19 ~~~~~~~~a~~~iN~~ggi~G-~~v~l~~~D~-~~d~~~~~~~~~~l~~~~~v~avig~~~s 78 (336)
T cd06326 19 AYRAGAQAYFDAVNAAGGVNG-RKIELVTLDD-GYEPERTVANTRKLIEDDKVFALFGYVGT 78 (336)
T ss_pred HHHHHHHHHHHHHHhcCCcCC-ceEEEEEeCC-CCChHHHHHHHHHHHhhcCcEEEEeCCCc
Confidence 355666666654432221122 3455555442 34677777888888875 77544444443
No 329
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.12 E-value=4.9e+02 Score=25.70 Aligned_cols=98 Identities=15% Similarity=0.268 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCC
Q psy14660 86 FMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDG 165 (375)
Q Consensus 86 l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~ 165 (375)
-.+|+++....+++...+ .+| |.|+|+ .++-+.+++.+|++.--.+.|+|.-..=....--+++++.++.
T Consensus 90 rv~G~Dl~~~Ll~~a~~~--~~~-vfllGg----kp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~--- 159 (253)
T COG1922 90 RVAGTDLVEALLKRAAEE--GKR-VFLLGG----KPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAA--- 159 (253)
T ss_pred cCChHHHHHHHHHHhCcc--Cce-EEEecC----CHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHh---
Confidence 345555555555554332 234 666665 6888999999999998888888876432221111577788874
Q ss_pred CCeeEEEecCCC----c-hhh--HhhhCCcccCCC
Q psy14660 166 SGSHMVTVAVGP----H-LSD--ALISSPIIQGED 193 (375)
Q Consensus 166 ~~Sh~v~vp~g~----~-Lsd--~l~sspi~~~~~ 193 (375)
.+-++|.|-=|. . +.+ ..+..+|..|-|
T Consensus 160 s~pdil~VgmG~P~QE~wi~~~~~~~~~~v~igVG 194 (253)
T COG1922 160 SGPDILLVGMGVPRQEIWIARNRQQLPVAVAIGVG 194 (253)
T ss_pred cCCCEEEEeCCCchhHHHHHHhHHhcCCceEEecc
Confidence 357888886663 2 333 334445555553
No 330
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=20.07 E-value=4.8e+02 Score=24.70 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=46.8
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc---------------chHHHHHHHHHhhCCC-CCCCee
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV---------------VNTELLNTFISTLNGK-DGSGSH 169 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~---------------~n~~kL~~fi~~vn~~-~~~~Sh 169 (375)
.++|+|||-+-+..=+..+..++.....-+...-+|.|.=.. ...+.|..|+..+... ....-|
T Consensus 17 ~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ 96 (233)
T PF05990_consen 17 DKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKRIH 96 (233)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCceEE
Confidence 468888886654432444566666666666777777775111 1245667777776654 334566
Q ss_pred EEEecCCCc-hhhHhh
Q psy14660 170 MVTVAVGPH-LSDALI 184 (375)
Q Consensus 170 ~v~vp~g~~-Lsd~l~ 184 (375)
++.--=|.. +...|-
T Consensus 97 ilaHSMG~rv~~~aL~ 112 (233)
T PF05990_consen 97 ILAHSMGNRVLLEALR 112 (233)
T ss_pred EEEeCchHHHHHHHHH
Confidence 666666764 444444
Done!