Query psy14660
Match_columns 375
No_of_seqs 231 out of 590
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:24:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 100.0 6.9E-77 2.4E-81 571.0 22.2 239 1-239 1-252 (268)
2 2x5n_A SPRPN10, 26S proteasome 100.0 7.1E-46 2.4E-50 338.2 22.4 187 2-191 1-189 (192)
3 1yx4_A 26S proteasome non-ATPa 100.0 1E-29 3.5E-34 218.7 5.9 101 197-300 24-125 (132)
4 1jey_B KU80; double-strand DNA 99.9 2.7E-21 9.3E-26 201.0 16.9 159 4-162 8-217 (565)
5 3ibs_A Conserved hypothetical 99.8 1.6E-19 5.3E-24 161.8 20.7 159 5-177 13-199 (218)
6 1atz_A VON willebrand factor; 99.7 3.9E-16 1.3E-20 137.8 18.6 163 5-181 7-175 (189)
7 1ijb_A VON willebrand factor; 99.7 5.8E-16 2E-20 139.1 19.7 165 5-181 15-186 (202)
8 1shu_X Anthrax toxin receptor 99.7 1.7E-16 5.7E-21 138.0 13.1 144 5-158 8-155 (182)
9 2xgg_A Microneme protein 2; A/ 99.7 5.7E-16 2E-20 136.2 16.3 144 5-154 19-169 (178)
10 1q0p_A Complement factor B; VO 99.7 6E-16 2E-20 138.3 16.3 167 5-181 17-210 (223)
11 1jey_A KU70; double-strand DNA 99.7 5.3E-16 1.8E-20 162.9 16.0 144 4-147 36-209 (609)
12 4hqf_A Thrombospondin-related 99.7 2E-15 7E-20 142.2 17.3 170 5-181 23-200 (281)
13 4hqo_A Sporozoite surface prot 99.7 2.3E-15 8E-20 141.3 17.3 169 5-181 20-197 (266)
14 2b2x_A Integrin alpha-1; compu 99.7 8.9E-15 3E-19 132.7 20.3 169 5-181 24-202 (223)
15 1v7p_C Integrin alpha-2; snake 99.7 1.1E-14 3.8E-19 129.7 20.3 165 5-181 8-186 (200)
16 3n2n_F Anthrax toxin receptor 99.7 6.6E-16 2.2E-20 134.6 11.8 153 5-175 9-168 (185)
17 1pt6_A Integrin alpha-1; cell 99.6 6E-15 2E-19 132.8 16.6 165 5-181 9-187 (213)
18 1mf7_A Integrin alpha M; cell 99.6 5.8E-16 2E-20 137.0 9.4 165 5-181 7-180 (194)
19 1n3y_A Integrin alpha-X; alpha 99.6 1E-15 3.5E-20 135.0 10.5 164 5-180 11-183 (198)
20 4fx5_A VON willebrand factor t 99.6 1.7E-14 5.8E-19 147.1 21.0 146 5-160 79-233 (464)
21 2odp_A Complement C2; C3/C5 co 99.6 1.9E-14 6.4E-19 145.1 14.0 168 5-181 11-204 (509)
22 1rrk_A Complement factor B; BB 99.6 2.5E-14 8.6E-19 143.3 14.4 169 5-183 3-198 (497)
23 2x31_A Magnesium-chelatase 60 99.6 3.6E-16 1.2E-20 137.5 0.4 147 4-159 6-163 (189)
24 3hrz_D Complement factor B; se 99.5 2.2E-13 7.4E-18 143.0 13.2 165 5-179 245-436 (741)
25 3zqk_A VON willebrand factor; 99.4 1.9E-12 6.4E-17 115.8 14.3 155 5-181 23-184 (199)
26 1mjn_A Integrin alpha-L; rossm 99.3 1.4E-12 4.7E-17 114.9 8.1 153 5-176 4-165 (179)
27 3k6s_A Integrin alpha-X; cell 99.2 5.4E-12 1.9E-16 140.5 7.0 161 5-177 132-301 (1095)
28 1yvr_A RO autoantigen, 60-kDa 99.0 6.8E-10 2.3E-14 114.6 8.9 129 5-147 370-505 (538)
29 2ww8_A RRGA, cell WALL surface 98.9 4.3E-09 1.5E-13 115.3 11.0 110 5-116 226-388 (893)
30 2nvo_A RO sixty-related protei 98.7 1.4E-07 4.7E-12 97.7 14.0 128 5-146 364-500 (535)
31 3rag_A Uncharacterized protein 98.6 1E-07 3.6E-12 90.2 8.9 89 5-100 136-229 (242)
32 2nut_A Protein transport prote 98.4 1.8E-06 6.3E-11 93.1 14.7 163 5-184 134-391 (769)
33 1pcx_A Protein transport prote 98.2 1.8E-05 6.1E-10 85.9 15.4 148 5-161 189-404 (810)
34 2iue_A Pactolus I-domain; memb 98.1 2.3E-05 8E-10 72.7 12.6 156 5-176 5-197 (212)
35 1m2v_B SEC24, protein transpor 98.1 3E-05 1E-09 85.4 14.1 148 5-161 305-520 (926)
36 1m2o_A SEC23, protein transpor 97.9 0.00018 6.1E-09 77.7 16.8 146 5-161 123-366 (768)
37 3fcs_B Integrin beta-3; beta p 97.8 0.00018 6.2E-09 77.0 13.7 147 5-157 113-325 (690)
38 1p9c_A 26S proteasome non-ATPa 97.7 9.3E-06 3.2E-10 58.2 1.4 27 274-300 11-37 (45)
39 3eh1_A Protein transport prote 97.6 0.0011 3.9E-08 71.4 16.0 145 5-160 162-367 (751)
40 3eh2_A Protein transport prote 97.6 0.0013 4.3E-08 71.2 16.0 148 5-160 175-388 (766)
41 3k6s_B Integrin beta-2; cell r 97.5 8.9E-05 3.1E-09 79.3 6.6 146 5-157 106-315 (687)
42 3efo_B SEC24 related gene fami 97.5 0.00063 2.1E-08 73.6 12.7 148 5-160 179-392 (770)
43 3vi3_B Integrin beta-1; beta p 97.2 0.0025 8.5E-08 65.2 12.3 127 5-138 124-313 (454)
44 3t3p_B Integrin beta-3; integr 97.0 0.004 1.4E-07 64.0 12.0 128 5-138 113-306 (472)
45 3v4v_B Integrin beta-7; cell a 96.8 0.015 5E-07 60.2 13.4 153 5-175 134-354 (503)
46 3rag_A Uncharacterized protein 96.5 0.0061 2.1E-07 57.6 8.0 53 107-159 10-66 (242)
47 2klz_A Ataxin-3; UIM, ubiquiti 92.6 0.011 3.7E-07 42.9 -1.5 37 257-301 6-43 (52)
48 3a1q_C Ubiquitin interaction m 91.9 0.04 1.4E-06 38.6 0.7 20 281-300 3-22 (45)
49 2rr9_C Putative uncharacterize 91.7 0.037 1.3E-06 38.9 0.3 19 282-300 1-19 (46)
50 1q0v_A Hydrophilic protein; ha 83.2 0.89 3E-05 36.2 3.4 21 282-302 9-29 (81)
51 3qhp_A Type 1 capsular polysac 82.8 5.5 0.00019 32.4 8.4 102 108-229 33-144 (166)
52 2klz_A Ataxin-3; UIM, ubiquiti 79.5 0.29 9.9E-06 35.5 -0.6 36 210-271 5-41 (52)
53 3d3k_A Enhancer of mRNA-decapp 75.5 7.8 0.00027 36.3 7.8 57 88-146 59-123 (259)
54 3fni_A Putative diflavin flavo 73.0 15 0.00052 31.1 8.5 41 106-146 4-44 (159)
55 3d3j_A Enhancer of mRNA-decapp 72.0 8.4 0.00029 37.0 7.3 57 88-146 106-170 (306)
56 1jzt_A Hypothetical 27.5 kDa p 71.8 8.9 0.0003 35.6 7.2 57 88-146 35-96 (246)
57 3okp_A GDP-mannose-dependent a 69.9 39 0.0013 30.9 11.2 48 107-157 198-248 (394)
58 2jjm_A Glycosyl transferase, g 69.9 28 0.00096 32.3 10.3 52 107-161 211-264 (394)
59 3u7r_A NADPH-dependent FMN red 66.8 14 0.00048 32.8 7.1 65 107-175 3-76 (190)
60 2amj_A Modulator of drug activ 65.7 12 0.0004 33.2 6.4 64 104-175 10-79 (204)
61 2o8n_A APOA-I binding protein; 65.2 11 0.00037 35.6 6.4 56 88-145 58-116 (265)
62 1yx4_A 26S proteasome non-ATPa 62.6 9.1 0.00031 32.9 4.7 24 198-221 29-52 (132)
63 2lnd_A De novo designed protei 62.0 34 0.0012 27.4 7.7 96 59-162 3-104 (112)
64 2fzv_A Putative arsenical resi 61.8 9.7 0.00033 36.2 5.4 67 105-175 57-132 (279)
65 1q0v_A Hydrophilic protein; ha 60.9 7.7 0.00026 30.8 3.7 23 208-230 51-73 (81)
66 3f6r_A Flavodoxin; FMN binding 60.0 9.2 0.00031 31.3 4.3 40 107-146 2-41 (148)
67 3hly_A Flavodoxin-like domain; 59.6 9.3 0.00032 32.4 4.4 40 107-146 1-40 (161)
68 1f4p_A Flavodoxin; electron tr 58.1 8.6 0.0003 31.4 3.8 39 107-145 1-39 (147)
69 2d3g_P Ubiquitin interacting m 57.5 6.6 0.00023 24.7 2.2 17 213-229 5-21 (26)
70 3vue_A GBSS-I, granule-bound s 57.5 45 0.0015 33.8 9.8 81 132-224 378-476 (536)
71 2gek_A Phosphatidylinositol ma 56.2 30 0.001 31.9 7.6 48 108-159 209-260 (406)
72 2a5l_A Trp repressor binding p 56.2 11 0.00038 32.1 4.4 40 107-146 6-45 (200)
73 2vzf_A NADH-dependent FMN redu 55.3 18 0.00063 31.3 5.7 40 107-146 3-45 (197)
74 1ydg_A Trp repressor binding p 54.1 14 0.00048 32.1 4.7 40 107-146 7-46 (211)
75 3c48_A Predicted glycosyltrans 52.1 80 0.0027 29.5 10.0 52 107-161 243-303 (438)
76 3a1q_C Ubiquitin interaction m 52.0 14 0.00049 25.8 3.4 18 210-227 5-22 (45)
77 2x6q_A Trehalose-synthase TRET 51.1 94 0.0032 28.9 10.3 56 107-162 231-291 (416)
78 2iw1_A Lipopolysaccharide core 50.5 46 0.0016 30.2 7.8 76 106-189 195-274 (374)
79 3b6i_A Flavoprotein WRBA; flav 50.4 18 0.0006 30.8 4.7 40 107-146 2-42 (198)
80 3rss_A Putative uncharacterize 50.0 36 0.0012 34.8 7.6 56 88-146 35-90 (502)
81 3k1y_A Oxidoreductase; structu 49.7 30 0.001 30.5 6.2 69 103-175 8-94 (191)
82 2ark_A Flavodoxin; FMN, struct 48.4 21 0.00072 30.6 4.9 40 107-146 5-45 (188)
83 3rg8_A Phosphoribosylaminoimid 48.2 75 0.0026 28.0 8.4 51 108-161 4-54 (159)
84 2q62_A ARSH; alpha/beta, flavo 48.0 25 0.00086 32.4 5.6 67 105-175 33-107 (247)
85 1xmp_A PURE, phosphoribosylami 47.8 39 0.0013 30.1 6.5 67 104-176 9-75 (170)
86 3qhp_A Type 1 capsular polysac 47.1 23 0.0008 28.5 4.7 76 107-190 2-79 (166)
87 3ors_A N5-carboxyaminoimidazol 47.0 44 0.0015 29.6 6.7 64 107-176 4-67 (163)
88 2db7_A Hairy/enhancer-OF-split 47.0 14 0.00048 27.8 3.0 27 336-362 31-57 (64)
89 2rr9_C Putative uncharacterize 46.8 21 0.00071 25.1 3.6 15 213-227 5-19 (46)
90 4grd_A N5-CAIR mutase, phospho 46.0 52 0.0018 29.4 7.0 66 105-176 11-76 (173)
91 3oow_A Phosphoribosylaminoimid 45.4 71 0.0024 28.4 7.8 64 107-176 6-69 (166)
92 1ag9_A Flavodoxin; electron tr 45.1 43 0.0015 28.3 6.3 27 108-134 2-28 (175)
93 3kuu_A Phosphoribosylaminoimid 44.9 47 0.0016 29.8 6.6 64 107-176 13-76 (174)
94 1t5b_A Acyl carrier protein ph 43.8 54 0.0018 27.7 6.7 40 107-146 2-46 (201)
95 3trh_A Phosphoribosylaminoimid 43.7 55 0.0019 29.2 6.8 50 108-160 8-57 (169)
96 2lta_A De novo designed protei 49.1 5.1 0.00017 32.2 0.0 48 107-161 3-50 (110)
97 2hna_A Protein MIOC, flavodoxi 42.8 28 0.00094 28.5 4.6 35 108-142 3-37 (147)
98 2qip_A Protein of unknown func 42.1 45 0.0015 28.4 6.0 50 82-144 92-142 (165)
99 5nul_A Flavodoxin; electron tr 40.8 16 0.00053 29.5 2.7 38 109-146 1-38 (138)
100 1bvy_F Protein (cytochrome P45 40.0 18 0.00062 31.9 3.2 41 105-145 20-60 (191)
101 1t0i_A YLR011WP; FMN binding p 39.8 45 0.0015 28.3 5.6 39 107-145 1-47 (191)
102 2f9f_A First mannosyl transfer 39.8 37 0.0013 28.1 5.0 20 209-228 146-165 (177)
103 2qhx_A Pteridine reductase 1; 39.3 2.4E+02 0.0081 26.2 12.2 20 126-145 247-266 (328)
104 3fro_A GLGA glycogen synthase; 39.2 83 0.0029 29.0 7.8 52 108-160 252-309 (439)
105 2q9u_A A-type flavoprotein; fl 39.1 1.9E+02 0.0067 27.3 10.6 40 107-146 257-296 (414)
106 1u11_A PURE (N5-carboxyaminoim 38.7 67 0.0023 28.9 6.6 64 107-176 22-85 (182)
107 3d7n_A Flavodoxin, WRBA-like p 38.3 11 0.00039 32.6 1.5 55 106-160 6-80 (193)
108 2zki_A 199AA long hypothetical 37.6 30 0.001 29.5 4.1 39 107-146 5-43 (199)
109 3hr4_A Nitric oxide synthase, 36.9 43 0.0015 30.6 5.2 57 87-146 23-79 (219)
110 1rzu_A Glycogen synthase 1; gl 36.3 1.8E+02 0.006 27.7 9.8 53 107-160 291-344 (485)
111 2fz5_A Flavodoxin; alpha/beta 36.2 32 0.0011 27.1 3.9 38 109-146 2-39 (137)
112 4gnr_A ABC transporter substra 34.7 96 0.0033 28.2 7.4 70 60-142 12-81 (353)
113 3tem_A Ribosyldihydronicotinam 34.5 44 0.0015 30.1 4.9 40 107-146 2-43 (228)
114 3lp6_A Phosphoribosylaminoimid 34.3 46 0.0016 29.8 4.8 49 108-159 9-57 (174)
115 2x6q_A Trehalose-synthase TRET 32.7 1.3E+02 0.0044 28.0 8.0 41 106-146 40-81 (416)
116 1o4v_A Phosphoribosylaminoimid 32.6 1.2E+02 0.0043 27.2 7.4 54 105-161 12-65 (183)
117 4b4k_A N5-carboxyaminoimidazol 32.1 1.8E+02 0.0061 26.1 8.3 62 109-176 25-86 (181)
118 2kln_A Probable sulphate-trans 31.9 1.3E+02 0.0043 24.0 6.8 41 107-147 48-92 (130)
119 2qzs_A Glycogen synthase; glyc 31.7 1.2E+02 0.0042 28.9 7.8 53 107-160 292-345 (485)
120 4gkb_A 3-oxoacyl-[acyl-carrier 31.3 1.5E+02 0.005 27.2 8.0 114 4-144 56-184 (258)
121 3k5w_A Carbohydrate kinase; 11 30.6 68 0.0023 32.6 6.0 53 88-146 31-83 (475)
122 1rtt_A Conserved hypothetical 29.9 32 0.0011 29.4 3.0 38 107-145 7-46 (193)
123 4hs4_A Chromate reductase; tri 29.9 89 0.003 27.4 6.0 65 107-175 7-82 (199)
124 2iuy_A Avigt4, glycosyltransfe 29.8 48 0.0016 30.1 4.3 50 107-161 162-211 (342)
125 3o26_A Salutaridine reductase; 29.8 1.5E+02 0.005 26.4 7.6 10 127-136 28-37 (311)
126 3zqu_A Probable aromatic acid 29.5 84 0.0029 28.4 5.9 34 107-142 5-38 (209)
127 2a1j_A DNA repair endonuclease 28.7 16 0.00054 26.9 0.7 22 337-360 3-24 (63)
128 3fvw_A Putative NAD(P)H-depend 28.5 1.4E+02 0.0047 25.7 6.9 38 107-145 3-42 (192)
129 3gyb_A Transcriptional regulat 28.5 1.9E+02 0.0066 25.1 8.0 120 7-146 82-214 (280)
130 3rpe_A MDAB, modulator of drug 28.5 75 0.0026 28.8 5.3 73 106-186 25-112 (218)
131 4edh_A DTMP kinase, thymidylat 28.3 1.2E+02 0.0041 26.8 6.6 53 106-158 5-57 (213)
132 2f6i_A ATP-dependent CLP prote 28.3 87 0.003 28.2 5.7 38 107-145 69-106 (215)
133 2ohh_A Type A flavoprotein FPR 28.1 2.1E+02 0.0073 26.7 8.8 41 106-146 256-296 (404)
134 1ykg_A SIR-FP, sulfite reducta 27.7 28 0.00096 29.4 2.2 39 107-145 10-48 (167)
135 3e03_A Short chain dehydrogena 27.5 3E+02 0.01 24.5 9.3 60 84-145 120-196 (274)
136 4gdh_A DJ-1, uncharacterized p 27.4 85 0.0029 27.2 5.4 38 107-146 5-42 (194)
137 1z00_B DNA repair endonuclease 26.9 24 0.00081 27.7 1.4 23 336-360 16-38 (84)
138 3gff_A IROE-like serine hydrol 26.8 4E+02 0.014 24.9 10.6 18 4-23 75-92 (331)
139 3r6w_A FMN-dependent NADH-azor 26.3 62 0.0021 28.1 4.3 40 107-146 2-46 (212)
140 4amg_A Snogd; transferase, pol 25.9 40 0.0014 31.3 3.1 50 88-143 9-58 (400)
141 3ipc_A ABC transporter, substr 25.9 2.2E+02 0.0076 25.6 8.2 58 84-144 20-77 (356)
142 2ejb_A Probable aromatic acid 25.9 96 0.0033 27.5 5.5 34 107-142 2-35 (189)
143 4b4t_W RPN10, 26S proteasome r 25.4 15 0.00051 34.8 0.0 21 282-302 222-242 (268)
144 3qjg_A Epidermin biosynthesis 25.4 68 0.0023 28.2 4.3 34 107-142 6-39 (175)
145 1ur4_A Galactanase; hydrolase, 25.3 2.9E+02 0.01 27.2 9.4 71 82-157 84-183 (399)
146 1umd_B E1-beta, 2-OXO acid deh 25.1 1.1E+02 0.0039 28.7 6.2 49 121-176 214-263 (324)
147 1sqs_A Conserved hypothetical 24.1 59 0.002 28.9 3.8 40 107-146 2-44 (242)
148 3sc4_A Short chain dehydrogena 24.0 3.9E+02 0.013 23.9 11.9 60 84-145 123-198 (285)
149 3lcm_A SMU.1420, putative oxid 24.0 91 0.0031 27.0 4.9 39 107-146 1-41 (196)
150 2acv_A Triterpene UDP-glucosyl 23.9 1.2E+02 0.0042 29.8 6.3 66 107-176 10-77 (463)
151 2hpv_A FMN-dependent NADH-azor 23.8 66 0.0022 27.6 3.9 38 107-144 2-45 (208)
152 2llw_A Heat shock protein STI1 23.7 30 0.001 26.4 1.4 11 283-293 8-18 (71)
153 2ki0_A DS119; beta-alpha-beta, 23.7 42 0.0014 22.1 1.9 21 120-140 13-33 (36)
154 1czn_A Flavodoxin; FMN binding 23.3 47 0.0016 27.6 2.8 38 107-145 1-38 (169)
155 3k9c_A Transcriptional regulat 23.2 3E+02 0.01 24.2 8.3 118 7-146 91-223 (289)
156 3v9p_A DTMP kinase, thymidylat 23.1 1.6E+02 0.0055 26.5 6.5 54 106-159 24-81 (227)
157 3qwd_A ATP-dependent CLP prote 23.1 1.3E+02 0.0044 26.9 5.8 66 79-146 31-96 (203)
158 3p2l_A ATP-dependent CLP prote 23.1 1.1E+02 0.0039 27.2 5.5 66 79-146 34-99 (201)
159 3ced_A Methionine import ATP-b 23.0 1.6E+02 0.0055 23.0 5.8 35 107-144 64-98 (98)
160 3jx9_A Putative phosphoheptose 23.0 85 0.0029 27.5 4.5 35 105-142 77-111 (170)
161 1xzo_A BSSCO, hypothetical pro 22.6 2.6E+02 0.0088 22.3 7.2 54 107-160 35-94 (174)
162 3guy_A Short-chain dehydrogena 22.6 3.6E+02 0.012 23.0 8.9 60 84-146 102-176 (230)
163 4dgh_A Sulfate permease family 22.5 2E+02 0.0067 22.8 6.3 65 79-147 25-93 (130)
164 1g63_A Epidermin modifying enz 22.4 63 0.0022 28.5 3.5 34 107-142 3-36 (181)
165 2iw1_A Lipopolysaccharide core 22.1 49 0.0017 30.0 2.9 37 108-144 2-40 (374)
166 3fro_A GLGA glycogen synthase; 22.0 1E+02 0.0034 28.5 5.0 38 107-144 3-44 (439)
167 4e08_A DJ-1 beta; flavodoxin-l 21.9 1.6E+02 0.0055 24.9 6.0 38 106-145 5-42 (190)
168 1w85_B Pyruvate dehydrogenase 21.8 1.5E+02 0.0053 27.8 6.4 49 121-176 213-262 (324)
169 1p3y_1 MRSD protein; flavoprot 21.8 70 0.0024 28.6 3.7 34 107-142 9-42 (194)
170 3ju3_A Probable 2-oxoacid ferr 21.8 1.9E+02 0.0065 23.2 6.1 50 120-176 24-74 (118)
171 3otg_A CALG1; calicheamicin, T 21.6 53 0.0018 30.6 3.0 42 102-144 16-57 (412)
172 2l82_A Designed protein OR32; 21.5 2.6E+02 0.0089 23.5 6.9 58 107-177 3-62 (162)
173 3p0r_A Azoreductase; structura 21.5 1.4E+02 0.0048 26.1 5.7 40 107-146 5-50 (211)
174 3pgx_A Carveol dehydrogenase; 21.5 1.9E+02 0.0065 25.8 6.7 88 50-144 108-209 (280)
175 3kvo_A Hydroxysteroid dehydrog 21.3 5.1E+02 0.017 24.3 12.8 59 84-145 159-234 (346)
176 2cby_A ATP-dependent CLP prote 21.3 1.5E+02 0.0051 26.3 5.8 38 107-145 58-95 (208)
177 1qzu_A Hypothetical protein MD 21.2 76 0.0026 28.6 3.9 35 106-142 19-54 (206)
178 3nyw_A Putative oxidoreductase 21.2 4.2E+02 0.014 23.2 9.7 22 126-147 171-192 (250)
179 2iuy_A Avigt4, glycosyltransfe 21.2 79 0.0027 28.6 4.1 26 121-146 33-58 (342)
180 2wwf_A Thymidilate kinase, put 21.2 1.1E+02 0.0038 25.6 4.8 36 106-142 9-45 (212)
181 3o38_A Short chain dehydrogena 21.2 3E+02 0.01 24.0 8.0 61 85-146 132-207 (266)
182 1e5d_A Rubredoxin\:oxygen oxid 20.9 3.7E+02 0.013 25.1 8.9 40 107-146 253-292 (402)
183 3c8f_A Pyruvate formate-lyase 20.9 1.2E+02 0.0039 26.1 4.9 52 108-159 71-122 (245)
184 4ds3_A Phosphoribosylglycinami 20.8 1E+02 0.0035 27.8 4.6 69 107-187 35-107 (209)
185 2ozl_B PDHE1-B, pyruvate dehyd 20.6 1.9E+02 0.0063 27.7 6.7 50 121-177 228-278 (341)
186 3i1j_A Oxidoreductase, short c 20.6 2.2E+02 0.0076 24.5 6.8 18 124-141 27-44 (247)
187 4gi5_A Quinone reductase; prot 20.6 1.7E+02 0.0057 27.5 6.2 41 106-146 22-64 (280)
188 2ywx_A Phosphoribosylaminoimid 20.5 1.8E+02 0.006 25.5 5.9 48 109-159 2-49 (157)
189 4dyv_A Short-chain dehydrogena 20.4 1.9E+02 0.0064 26.0 6.5 21 126-146 190-210 (272)
190 3hp4_A GDSL-esterase; psychrot 20.2 2.6E+02 0.0089 22.5 6.8 42 108-149 3-50 (185)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-77 Score=571.01 Aligned_cols=239 Identities=49% Similarity=0.756 Sum_probs=189.0
Q ss_pred CCcceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhcccC
Q psy14660 1 MVLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQ 79 (375)
Q Consensus 1 m~lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l~ 79 (375)
|||||||||||+|.||+|+||.||||+++++|++.|++.|+++||+++||||+|+|. +.|++|||+|+++|+.+||.++
T Consensus 1 m~lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~ 80 (268)
T 4b4t_W 1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQ 80 (268)
T ss_dssp CCCEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCC
T ss_pred CCceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcC
Confidence 999999999999999999999999999999999999999999999999999999995 7899999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++|.+++.+||++|+++||||+++++++|||||++|+.+++++++.+++|++||+||+|+|||||+..+|.++|++|+++
T Consensus 81 ~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~ 160 (268)
T 4b4t_W 81 IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAA 160 (268)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeeEEEecCCCc-hhhHhhhCCcccCCCCCCC-----------CCCCCCccCCCCCCCHHHHHHHHhcHHHHH
Q psy14660 160 LNGKDGSGSHMVTVAVGPH-LSDALISSPIIQGEDGAGG-----------APGSSYEFGVDPNEDPELALALRVSMEEQR 227 (375)
Q Consensus 160 vn~~~~~~Sh~v~vp~g~~-Lsd~l~sspi~~~~~~~~~-----------~~~~~~~fgvdp~~DPELa~Alr~Sleee~ 227 (375)
+|++.+++||||+||||++ |||.|++|||+.|++++++ ++|++|||||||++||||||||||||||||
T Consensus 161 ~Ng~~~~~s~~v~v~~g~~~lsd~l~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~dpela~alr~s~eee~ 240 (268)
T 4b4t_W 161 VNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSMEEEQ 240 (268)
T ss_dssp HCSSTTTSCEEEEECCCSSCHHHHHHTSTTSCCCCC--------------------------------------------
T ss_pred hcCCCCCceeEEEeCCCCccHHHHHhcCCccccCCccccccccccccccccCCcccccCCCCCCCHHHHHHHHHhHHHHH
Confidence 9998778999999999986 9999999999999864321 234568999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q psy14660 228 ARQESEARRAAE 239 (375)
Q Consensus 228 ~rq~~~~~~~~~ 239 (375)
+|||++++++..
T Consensus 241 ~rq~~~~~~~~~ 252 (268)
T 4b4t_W 241 QRQERLRQQQQQ 252 (268)
T ss_dssp ------------
T ss_pred HHHHHHhhcccc
Confidence 999999887654
No 2
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-46 Score=338.18 Aligned_cols=187 Identities=48% Similarity=0.790 Sum_probs=176.1
Q ss_pred CcceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccCC
Q psy14660 2 VLESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 2 ~lEaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~~ 80 (375)
|+|++|||||+|.||+++||.||||+++++++..|+..++++||+++||||+|++ .+++++|||+|+.+|+..|+.+.+
T Consensus 1 ~~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~ 80 (192)
T 2x5n_A 1 VLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPV 80 (192)
T ss_dssp CCEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCC
T ss_pred CceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCC
Confidence 6899999999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
.|+++++.||++|+.+|+|++++.+++|||||++|+.++++.++.++++++|++||+|+|||||++.+|.+ |++|++++
T Consensus 81 ~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 81 RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 99999999999999999999888889999999999887789999999999999999999999999988888 99999999
Q ss_pred CCCCCCCeeEEEecCCCc-hhhHhhhCCcccC
Q psy14660 161 NGKDGSGSHMVTVAVGPH-LSDALISSPIIQG 191 (375)
Q Consensus 161 n~~~~~~Sh~v~vp~g~~-Lsd~l~sspi~~~ 191 (375)
|+++ +|||++||+|++ |+|.|++|||+.|
T Consensus 160 n~~~--~s~~~~~~~~~~~l~d~~~~s~~~~~ 189 (192)
T 2x5n_A 160 NSSD--SCHLVSIPPSPQLLSDLVNQSPIGQG 189 (192)
T ss_dssp CSTT--CCEEEEECCCSSCHHHHHHTSTTSCC
T ss_pred cCCC--ceEEEEecCcchhHHHHHhcCccccc
Confidence 9754 899999999995 9999999999975
No 3
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=99.96 E-value=1e-29 Score=218.66 Aligned_cols=101 Identities=51% Similarity=0.706 Sum_probs=77.9
Q ss_pred CCCCCCCccCCCCCCCHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhhc-ccccccccCCCCCC
Q psy14660 197 GAPGSSYEFGVDPNEDPELALALRVSMEEQRARQESEARRAAEGASGADTSASSAVPKPTAEAKD-APGDMATAAHPVGG 275 (375)
Q Consensus 197 ~~~~~~~~fgvdp~~DPELa~Alr~Sleee~~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~a~~~s~~~~~~~~ 275 (375)
+.|+++|+|||||++||||||||||||||||+||+++++++.+++ +++.+.++....++++++| +++.++. .....
T Consensus 24 ~~~~~~fefgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~~~~e~s-aa~~~~a~~~~~~~eeamL~~a~~~~~--~~~~~ 100 (132)
T 1yx4_A 24 GLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAAAS-AAEAGIATTGTEDSDDALLKMTISQQE--FGRTG 100 (132)
T ss_dssp CCCSSSCCSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHSSSSSCCCCCSCHHHHHHHHHHHHH--HHHSS
T ss_pred ccCccccccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHHhhcccc-cccccccccCCcccHHHHHHHhhcccc--cCCCC
Confidence 356778999999999999999999999999999999999766442 2222222333346788888 7766542 22345
Q ss_pred CCCCCCCChHHHHHHHHHcccCCCC
Q psy14660 276 QPDFATMTEEEQIAFAMQMSMQDTQ 300 (375)
Q Consensus 276 ~~~~~~m~ee~~~~~a~~ms~~~~~ 300 (375)
.+++++||||+||+||||||||++.
T Consensus 101 ~~d~~~MtEEeqLa~ALqMSMQe~~ 125 (132)
T 1yx4_A 101 LPDLSSMTEEEQIAYAMQMSLQGAE 125 (132)
T ss_dssp CCCSTTSCHHHHHHHHHHHSSSSCS
T ss_pred CCchhhCChHHHHHHHHHhcccccc
Confidence 6799999999999999999999764
No 4
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.86 E-value=2.7e-21 Score=200.97 Aligned_cols=159 Identities=15% Similarity=0.285 Sum_probs=135.8
Q ss_pred ceEEEEEeCCccccCCCC-CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce--------------eEEecCCCCH
Q psy14660 4 ESTMICVDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV--------------EVLATLTSDV 68 (375)
Q Consensus 4 EaivI~lDnSesMrngD~-~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a--------------~vl~pLT~D~ 68 (375)
|++|||||+|.||.++|+ .||||+++++++..|++.|+..+|.++||||+|++.+ +++.+|+...
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~ 87 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPD 87 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCC
Confidence 999999999999999999 8999999999999999999999999999999999753 3677777666
Q ss_pred HHHHHhhcc-cCCC-CCccHHHHHHHHHHHhhcc--CCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEE-EEEe
Q psy14660 69 GRILSKLHQ-VQPN-GNINFMTGIRIAHLALKHR--QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVD-IVSF 143 (375)
Q Consensus 69 ~~Il~~L~~-l~~~-G~~~l~~gI~vA~laLKhr--~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~Vd-iIgf 143 (375)
..++..|+. +.++ ++++|+.||.+|...|+++ ..+..++|||+|+++..+.+..++..+|+.|+++||.|+ ||||
T Consensus 88 ~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~ 167 (565)
T 1jey_B 88 FDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPF 167 (565)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESS
T ss_pred HHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEecc
Confidence 778888998 7766 7899999999999999998 444466899999865554456789999999999999999 9999
Q ss_pred cCCc-------------------------------chHHHHHHHHHhhCC
Q psy14660 144 GEEV-------------------------------VNTELLNTFISTLNG 162 (375)
Q Consensus 144 G~e~-------------------------------~n~~kL~~fi~~vn~ 162 (375)
|... .|...|+.|++.+|+
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G 217 (565)
T 1jey_B 168 SLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEG 217 (565)
T ss_dssp CCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCC
Confidence 8751 244568999998876
No 5
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.6e-19 Score=161.79 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=129.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCC----
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP---- 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~---- 80 (375)
.++||||.|.||...|+.|+||+.++.++..|+.. .|.++||||+|++.+++++|+|.|+..+...|..+.+
T Consensus 13 ~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~----~~~~~v~lv~F~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 88 (218)
T 3ibs_A 13 EVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE----LDNDKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSLIS 88 (218)
T ss_dssp EEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT----CSSCEEEEEEESSSEEEEEEEESCHHHHHHHHHTCCGGGCC
T ss_pred cEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh----CCCCeEEEEEECCCceEeCCCCCCHHHHHHHHHhcCcccCC
Confidence 58999999999999999999999999999999875 4689999999999999999999999999999998875
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC--------------
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE-------------- 146 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e-------------- 146 (375)
.|++++..||..|...|+.++ ..++.||+|+++..+.+ .+...++.+++.+|.|++||||..
T Consensus 89 ~g~T~l~~al~~a~~~l~~~~--~~~~~ivllTDG~~~~~--~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~ 164 (218)
T 3ibs_A 89 KQGTAIGEAINLATRSFTPQE--GVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYR 164 (218)
T ss_dssp SCSCCHHHHHHHHHTTSCSCS--SCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBC
T ss_pred CCCCcHHHHHHHHHHHHhhCC--CCCcEEEEEcCCCCCCC--cHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCcee
Confidence 689999999999997776542 33345555554432222 678889999999999999999985
Q ss_pred ----------cchHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 147 ----------VVNTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 147 ----------~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
..+...|+.+.+..+ .+|+.+....
T Consensus 165 ~~~~g~~~~~~~~~~~L~~iA~~~g------G~~~~~~~~~ 199 (218)
T 3ibs_A 165 RDREGNVIVTRLNEGMCQEIAKDGK------GIYVRVDNSN 199 (218)
T ss_dssp BCTTSCBCEECCCHHHHHHHHHHTE------EEEEEECSSS
T ss_pred EcCCCCEeEecCCHHHHHHHHHhcC------CEEEECCCCh
Confidence 356788999988743 3556665533
No 6
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.71 E-value=3.9e-16 Score=137.79 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=125.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecC--CCCHHHHHHhhcccCC-C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL--TSDVGRILSKLHQVQP-N 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pL--T~D~~~Il~~L~~l~~-~ 81 (375)
.++|+||.|.||.. +||+.++.++..|+..+--.....+||||+|++.++++.|+ +.|...+..+|..+.. +
T Consensus 7 div~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~ 81 (189)
T 1atz_A 7 DVILLLDGSSSFPA-----SYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREG 81 (189)
T ss_dssp EEEEEEECSSSSCH-----HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCC
T ss_pred eEEEEEeCCCCCCh-----hhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 58999999999974 89999999999999875333445799999999999999999 8999999999999975 6
Q ss_pred CCccHHHHHHHHHHHhhccC---CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 82 GNINFMTGIRIAHLALKHRQ---GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~---~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
|++++..||+.|...+.... ..+.++.+|||+++..+. ++...++.+++.||.|++||+|.. .+.+.|+.+..
T Consensus 82 g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~---~~~~~~~~~~~~gi~v~~igvG~~-~~~~~L~~iA~ 157 (189)
T 1atz_A 82 GPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVD---SVDAAADAARSNRVTVFPIGIGDR-YDAAQLRILAG 157 (189)
T ss_dssp CCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSS---CCHHHHHHHHHTTEEEEEEEESSS-SCHHHHHHHTG
T ss_pred CcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCc---hHHHHHHHHHHCCCEEEEEEcCCc-CCHHHHHHHHC
Confidence 88999999999997775421 112333466666554332 356788899999999999999986 35678887865
Q ss_pred hhCCCCCCCeeEEEecCCCchhh
Q psy14660 159 TLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 159 ~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
.- .+.|+..+..-..|..
T Consensus 158 ~~-----~~~~~~~~~~~~~~~~ 175 (189)
T 1atz_A 158 PA-----GDSNVVKLQRIEDLPT 175 (189)
T ss_dssp GG-----GGGGCEEESSTTHHHH
T ss_pred CC-----cccCEEEecChhhHHH
Confidence 42 2468888865444433
No 7
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.71 E-value=5.8e-16 Score=139.05 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=123.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~~G 82 (375)
.++|+||.|.||.. ++|+.+++++..|++.+.-..+..+||||+|++.+++..+++ .+...+...|..+...|
T Consensus 15 divfvlD~SgSm~~-----~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~g 89 (202)
T 1ijb_A 15 DLVFLLDGSSRLSE-----AEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAG 89 (202)
T ss_dssp EEEEEEECBTTSCH-----HHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCC
T ss_pred cEEEEEECCCCCCH-----HHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCcCCC
Confidence 58999999999963 689999999999998754334568999999999999999999 89999999999997654
Q ss_pred C--ccHHHHHHHHHHH-hhccCCCCCccEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 83 N--INFMTGIRIAHLA-LKHRQGKNHKMRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 83 ~--~~l~~gI~vA~la-LKhr~~k~~~~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
+ ++++.||+.|... ++....++.++.||||+ ++...+ ..++...++.|++.||.|++||||.. .+.+.|+.+.
T Consensus 90 g~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillT-DG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~-~~~~~L~~iA 167 (202)
T 1ijb_A 90 SQVASTSEVLKYTLFQIFSKIDRPEASRIALLLM-ASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPH-ANLKQIRLIE 167 (202)
T ss_dssp BSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEE-CCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTT-SCHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEc-cCCCCccchHHHHHHHHHHHHCCCEEEEEecCCc-CCHHHHHHHh
Confidence 3 9999999999743 33211123334455554 433322 24688899999999999999999975 3567888887
Q ss_pred HhhCCCCCCCeeEEEecCCCchhh
Q psy14660 158 STLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 158 ~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
... ++.|++.+..-..|.+
T Consensus 168 ~~~-----~~~~~~~~~~~~~L~~ 186 (202)
T 1ijb_A 168 KQA-----PENKAFVLSSVDELEQ 186 (202)
T ss_dssp HHC-----TTCCCEEESSGGGHHH
T ss_pred CCC-----CcccEEEeCCHHHHHH
Confidence 642 2357777765444443
No 8
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.69 E-value=1.7e-16 Score=137.98 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=108.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccC---CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ---PN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~---~~ 81 (375)
.++|+||.|.||...++ +|+...+.++..| .. |.++||||+|++.++++.|+|.+...+...|..+. ++
T Consensus 8 dvv~vlD~SgSM~~~~~--~~~~~~~~~~~~~----~~--~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 79 (182)
T 1shu_X 8 DLYFVLDKSGSVANNWI--EIYNFVQQLAERF----VS--PEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPV 79 (182)
T ss_dssp EEEEEEECSGGGGGGHH--HHHHHHHHHHHHC----CC--TTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCC
T ss_pred eEEEEEECCCCcccCHH--HHHHHHHHHHHHh----cC--CCceEEEEEeCCCceEEECCCCCHHHHHHHHHhcccCCCC
Confidence 58999999999986332 3555555555444 33 78999999999999999999999999988887764 78
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC-hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d-~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
|++++..||+.|...|+.+..++.++.||+|+++..+.+ ...+...++.+++.+|.|++||||. .+...|+.+..
T Consensus 80 g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~--~~~~~L~~ia~ 155 (182)
T 1shu_X 80 GETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD--FEQAQLERIAD 155 (182)
T ss_dssp SCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSS--CCHHHHHHHSS
T ss_pred CCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCc--CCHHHHHHHhC
Confidence 999999999999988876543334445555554433333 3456778999999999999999994 45667777743
No 9
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.69 E-value=5.7e-16 Score=136.23 Aligned_cols=144 Identities=14% Similarity=0.154 Sum_probs=108.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHHHHHhhcccC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ- 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~Il~~L~~l~- 79 (375)
.++|+||.|.||. +++|+.+++++..|+..+-...+..+||||+|++.+.+.++++. +...+...|..+.
T Consensus 19 divfvlD~SgSm~-----~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~ 93 (178)
T 2xgg_A 19 DICFLIDSSGSIG-----IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPY 93 (178)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCC
T ss_pred eEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCCC
Confidence 5899999999996 46899999999999987533345689999999999999999998 8899999999997
Q ss_pred CCCCccHHHHHHHHHHHhhccC--CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHH
Q psy14660 80 PNGNINFMTGIRIAHLALKHRQ--GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLN 154 (375)
Q Consensus 80 ~~G~~~l~~gI~vA~laLKhr~--~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~ 154 (375)
++|++++..||+.|...|.... .+....++||++++....+..++...++.|++.||.|++||||... |.+.|+
T Consensus 94 ~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~igvG~~~-~~~~l~ 169 (178)
T 2xgg_A 94 KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLAVGHYV-AAALVP 169 (178)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEECC----------
T ss_pred CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEcCCcC-CHHHHh
Confidence 6789999999999987653211 1112345555555544444556888999999999999999999874 444554
No 10
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.69 E-value=6e-16 Score=138.32 Aligned_cols=167 Identities=13% Similarity=0.191 Sum_probs=122.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEe----cCCCCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA----TLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~----pLT~D~~~Il~~L~~l~~ 80 (375)
.++||||.|.||.. ++|..+++++..|+..+...++..+||||+|++.+++++ ++|.|...+..+|..+.+
T Consensus 17 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 91 (223)
T 1q0p_A 17 NIYLVLDGSDSIGA-----SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 91 (223)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCT
T ss_pred eEEEEEeCCCCCch-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhccc
Confidence 58999999999985 469999999999998877778889999999999999988 777788999999999975
Q ss_pred -----CCCccHHHHHHHHHHHhhccCCC-----CCccEEEEEEcCCCCC---ChHHHHHHHHH----------HHhCCcE
Q psy14660 81 -----NGNINFMTGIRIAHLALKHRQGK-----NHKMRIIAFVGSPVDL---EERELTKLAKR----------LKKEKVN 137 (375)
Q Consensus 81 -----~G~~~l~~gI~vA~laLKhr~~k-----~~~~RIIvfvgSp~~~---d~~~l~~lakk----------LKk~~I~ 137 (375)
+|++++..||+.|...|...... ....++|||+++.... ++......++. +++.+|.
T Consensus 92 ~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 171 (223)
T 1q0p_A 92 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 171 (223)
T ss_dssp TSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEE
T ss_pred ccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcE
Confidence 58999999999999888754321 1234555555444432 56655555543 4678999
Q ss_pred EEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 138 VDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 138 VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
|++||||... +.+.|+.+....+ +..|++.+.....|.+
T Consensus 172 i~~igvG~~~-~~~~L~~iA~~~~----G~~~~~~~~~~~~L~~ 210 (223)
T 1q0p_A 172 VYVFGVGPLV-NQVNINALASKKD----NEQHVFKVKDMENLED 210 (223)
T ss_dssp EEEEECSSCC-CHHHHHHHSCCCT----TCCCEEETTC------
T ss_pred EEEEEecCcC-CHHHHHHHhcCCC----CCceEEEcCCHHHHHH
Confidence 9999999753 4677777754321 1238888876544543
No 11
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.67 E-value=5.3e-16 Score=162.89 Aligned_cols=144 Identities=16% Similarity=0.152 Sum_probs=114.5
Q ss_pred ceEEEEEeCCccccCCCC--CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce----------eEEecCC-CCHHH
Q psy14660 4 ESTMICVDNSDFMRNGDF--LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV----------EVLATLT-SDVGR 70 (375)
Q Consensus 4 EaivI~lDnSesMrngD~--~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a----------~vl~pLT-~D~~~ 70 (375)
|+||||||+|.||.+.|+ .||||+++++++..|++.+.-.+|.++||||.|++.+ +++.||+ .+...
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ 115 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKR 115 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHH
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHH
Confidence 789999999999999994 8999999999999999999889999999999999865 6777775 33332
Q ss_pred --HHHhhcc----------cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC--Ch---HHHHHHHHHHHh
Q psy14660 71 --ILSKLHQ----------VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--EE---RELTKLAKRLKK 133 (375)
Q Consensus 71 --Il~~L~~----------l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~--d~---~~l~~lakkLKk 133 (375)
.+..|.. +..+++++|+.||.+|...|+++..+...+|||+|++..... +. ..+..+|+.|++
T Consensus 116 ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~ 195 (609)
T 1jey_A 116 ILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRD 195 (609)
T ss_dssp HHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 2222221 122357999999999999998875444467899998754432 22 368899999999
Q ss_pred CCcEEEEEEecCCc
Q psy14660 134 EKVNVDIVSFGEEV 147 (375)
Q Consensus 134 ~~I~VdiIgfG~e~ 147 (375)
.||.|++||+|...
T Consensus 196 ~gI~i~~igig~~~ 209 (609)
T 1jey_A 196 TGIFLDLMHLKKPG 209 (609)
T ss_dssp HTEEEEEEEBCCTT
T ss_pred cCcEEEEEecCCCC
Confidence 99999999999863
No 12
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.66 E-value=2e-15 Score=142.15 Aligned_cols=170 Identities=9% Similarity=0.169 Sum_probs=128.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCC----HHHHHHhhcccC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQVQ- 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D----~~~Il~~L~~l~- 79 (375)
.++|+||.|.||... +++...+.++..|+..+.......+||||+|++.+.++.+|+.+ ...++.+|..+.
T Consensus 23 div~vlD~SgSM~~~----~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~ 98 (281)
T 4hqf_A 23 DLYLLMDGSGSIRRH----NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLS 98 (281)
T ss_dssp EEEEEEECCCCSSTH----HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCcCHH----HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhh
Confidence 589999999999753 23378999999999876555568899999999999999998875 788888888875
Q ss_pred ---CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHH
Q psy14660 80 ---PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF 156 (375)
Q Consensus 80 ---~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~f 156 (375)
++|+++++.||+.|...|..+.......++||++.++...++.++...++.|++.||.|++||||.. .+.+.|+.+
T Consensus 99 ~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~i 177 (281)
T 4hqf_A 99 TNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFL 177 (281)
T ss_dssp TTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhh
Confidence 5899999999999987776543322335666666565555777899999999999999999999987 355677766
Q ss_pred HHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 157 ISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 157 i~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
...-. .+++.|++.+..-..|.+
T Consensus 178 A~~~~--~~g~~~~~~~~~~~~L~~ 200 (281)
T 4hqf_A 178 VGCHP--SDGKCNLYADSAWENVKN 200 (281)
T ss_dssp TTSCS--SSSCCTTEEEECGGGHHH
T ss_pred hCCCC--CCCCCceEEecchhhhhc
Confidence 43210 111157777776554443
No 13
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.66 E-value=2.3e-15 Score=141.33 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=127.9
Q ss_pred eEEEEEeCCccccCCCCCCCHH-HHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCC----HHHHHHhhccc-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQV- 78 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL-~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D----~~~Il~~L~~l- 78 (375)
.++|+||.|.||.. +.| ...++++..|+..+.-.++..+||||+|++.+.++.+||.. ...++.+|..+
T Consensus 20 DivfvlD~SgSM~~-----~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~ 94 (266)
T 4hqo_A 20 DLYLLVDGSGSIGY-----PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELR 94 (266)
T ss_dssp EEEEEEECSTTTCH-----HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHH
T ss_pred eEEEEEECCCCcCh-----hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhh
Confidence 47999999999975 456 47788999999887655688999999999999999999975 78899999988
Q ss_pred ---CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHH
Q psy14660 79 ---QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNT 155 (375)
Q Consensus 79 ---~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~ 155 (375)
.++|+++++.||+.|...|+.+.......++||++.++...++.++...++.+++.||.|++||||... +.+.|+.
T Consensus 95 ~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d~~~~~~~a~~l~~~gi~i~~iGiG~~~-~~~~L~~ 173 (266)
T 4hqo_A 95 KTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNSKYRALEVANKLKQRNVRLAVIGIGQGI-NHQFNRL 173 (266)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSCHHHHHHHHHHHHHTTCEEEEEECSSSC-CHHHHHH
T ss_pred hccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCCchHHHHHHHHHHHCCCEEEEEecCccc-CHHHHHH
Confidence 678999999999999888876422222345555555555557788999999999999999999999864 4567777
Q ss_pred HHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 156 FISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
+...-.+ + .+.+++.+..-..|.+
T Consensus 174 iA~~~~~-~-g~~~~~~~~d~~~L~~ 197 (266)
T 4hqo_A 174 IAGCRPR-E-PNCKFYSYADWNEAVA 197 (266)
T ss_dssp HHTCCTT-C-SSCTTEECSCHHHHHH
T ss_pred hhCCCCC-C-CCCCeEEecCHHHHHH
Confidence 7543111 1 1246666655333444
No 14
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.65 E-value=8.9e-15 Score=132.73 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=119.9
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~~G 82 (375)
.++|+||.|.||.+ |+.++.++..|+..+.-..+..+||||+|++.+++++|++ .+...++..|..+.+.|
T Consensus 24 div~vlD~SgSM~~-------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~g 96 (223)
T 2b2x_A 24 DIVIVLDGSNSIYP-------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRG 96 (223)
T ss_dssp EEEEEEECSTTCCC-------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCC
T ss_pred eEEEEEECCCChhh-------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHHHHHhhhccC
Confidence 47999999999983 8899999999998664457899999999999999999996 46788899999887654
Q ss_pred --CccHHHHHHHHHHH-hhccC-CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcch----HHHHH
Q psy14660 83 --NINFMTGIRIAHLA-LKHRQ-GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVN----TELLN 154 (375)
Q Consensus 83 --~~~l~~gI~vA~la-LKhr~-~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n----~~kL~ 154 (375)
.+++..||+.|... +.... ......++||++++....+..++...++.+++.||.|++||||..... ...+.
T Consensus 97 G~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~ 176 (223)
T 2b2x_A 97 GRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFV 176 (223)
T ss_dssp CSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHH
T ss_pred CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEecCccccccccchhHH
Confidence 49999999999865 33211 112234555555555544555688899999999999999999986421 11122
Q ss_pred HHHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 155 TFISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 155 ~fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
.....+-+. .++.|+..+.....|.+
T Consensus 177 ~~L~~iA~~-p~~g~~~~~~~~~~L~~ 202 (223)
T 2b2x_A 177 EEIKSIASE-PTEKHFFNVSDELALVT 202 (223)
T ss_dssp HHHHTTSCS-SGGGTEEEESSTTGGGG
T ss_pred HHHHHHhCC-CchhcEEEeCCHHHHHH
Confidence 233333322 12468888876554443
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.65 E-value=1.1e-14 Score=129.74 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=120.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCCC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN- 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~~- 81 (375)
.++|+||.|.||.+ |+.++.++..|+..+.-.++..+||||+|++.+++++||| .+...++..|..+.+.
T Consensus 8 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~ 80 (200)
T 1v7p_C 8 DVVVVCDESNSIYP-------WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYG 80 (200)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCC
T ss_pred cEEEEEECCCCccc-------HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHHhhhccC
Confidence 58999999999973 8899999999998764445689999999999999999999 4788899999999765
Q ss_pred C-CccHHHHHHHHHHH-hhccCC-CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC-----Ccch---H
Q psy14660 82 G-NINFMTGIRIAHLA-LKHRQG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE-----EVVN---T 150 (375)
Q Consensus 82 G-~~~l~~gI~vA~la-LKhr~~-k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~-----e~~n---~ 150 (375)
| .+++..||+.|... +....+ +....++||++.+....+...+...++.+++.||.|++||+|. .... .
T Consensus 81 G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~ 160 (200)
T 1v7p_C 81 GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLI 160 (200)
T ss_dssp CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGGGHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHH
T ss_pred CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcccHHHHHHHHHHCCCEEEEEEecccccccccchhhHH
Confidence 4 59999999999875 432111 1123455555555545566667788999999999999999953 2221 2
Q ss_pred HHHHHHHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 151 ELLNTFISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 151 ~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
+.|+.+... +.+.|+..+.....|.+
T Consensus 161 ~~L~~iA~~-----~~g~~~~~~~~~~~l~~ 186 (200)
T 1v7p_C 161 KEIKAIASI-----PTERYFFNVSDEAALLE 186 (200)
T ss_dssp HHHHHHSCS-----SHHHHEEEESSSGGGHH
T ss_pred HHHHHHhCC-----ccHhcEEEcCCHHHHHH
Confidence 446555432 22467777765544443
No 16
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.65 E-value=6.6e-16 Score=134.56 Aligned_cols=153 Identities=20% Similarity=0.187 Sum_probs=114.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccC---CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ---PN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~---~~ 81 (375)
.++|+||.|.||.. + |...++++..++..+ .+|..+||||+|++.++++.|+|.|...+...|..+. ++
T Consensus 9 div~vlD~SgSM~~-~-----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~ 80 (185)
T 3n2n_F 9 DLYFILDKSGSVLH-H-----WNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPG 80 (185)
T ss_dssp EEEEEEECSGGGGG-G-----HHHHHHHHHHHHHHC--CCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCC
T ss_pred eEEEEEeCCCChhh-h-----HHHHHHHHHHHHHHh--CCCCcEEEEEEEecCceEEeccCCCHHHHHHHHHHHhhhcCC
Confidence 48999999999985 2 455566666666665 3578999999999999999999999999998888874 68
Q ss_pred CCccHHHHHHHHHHHhhc--cCCCCCccEEEEEEcCCCCCChH--HHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 82 GNINFMTGIRIAHLALKH--RQGKNHKMRIIAFVGSPVDLEER--ELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKh--r~~k~~~~RIIvfvgSp~~~d~~--~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
|++++..||+.|...|.. +.... ..++||+++++...+.. .+...++.+++.||.|++|||| ..+.+.|+.+.
T Consensus 81 g~T~~~~al~~a~~~l~~~~~~~~~-~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA 157 (185)
T 3n2n_F 81 GDTYMHEGFERASEQIYYENRQGYR-TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVK--DFNETQLARIA 157 (185)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTCBC-EEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTS
T ss_pred CCccHHHHHHHHHHHHhhccccCCC-CCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHh
Confidence 999999999999986632 22222 34555555554433222 4578999999999999999999 35667777664
Q ss_pred HhhCCCCCCCeeEEEecC
Q psy14660 158 STLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 158 ~~vn~~~~~~Sh~v~vp~ 175 (375)
. .+.|++.+..
T Consensus 158 ~-------~~~~~~~~~~ 168 (185)
T 3n2n_F 158 D-------SKDHVFPVND 168 (185)
T ss_dssp S-------SGGGEEEHHH
T ss_pred C-------CCCCeEEecc
Confidence 2 2467777765
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.63 E-value=6e-15 Score=132.76 Aligned_cols=165 Identities=13% Similarity=0.175 Sum_probs=119.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--CCHHHHHHhhcccCCC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN- 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--~D~~~Il~~L~~l~~~- 81 (375)
.++|+||.|.||.+ |+.++.++..|+..+--.++..+||||+|++.+++++|++ .+...++..|..+.+.
T Consensus 9 div~vlD~SgSm~~-------~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~ 81 (213)
T 1pt6_A 9 DIVIVLDGSNSIYP-------WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRG 81 (213)
T ss_dssp EEEEEEECCTTCCC-------HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCC
T ss_pred cEEEEEECCCChhh-------HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHHhccCCC
Confidence 58999999999983 8899999999987654356899999999999999999996 4677888999988765
Q ss_pred C-CccHHHHHHHHHHH-hhccC-CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc----h----H
Q psy14660 82 G-NINFMTGIRIAHLA-LKHRQ-GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV----N----T 150 (375)
Q Consensus 82 G-~~~l~~gI~vA~la-LKhr~-~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~----n----~ 150 (375)
| .+++..||+.|... ++... ......++||++++....+..++...++.+++.||.|++||||.... + .
T Consensus 82 G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~ 161 (213)
T 1pt6_A 82 GRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFV 161 (213)
T ss_dssp CSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHH
T ss_pred CCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhH
Confidence 4 48999999999865 33111 11223455555555444455568889999999999999999997532 0 2
Q ss_pred HHHHHHHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 151 ELLNTFISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 151 ~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
+.|+.+... .++.|++.+.....|.+
T Consensus 162 ~~L~~iA~~-----~~~g~~~~~~~~~~l~~ 187 (213)
T 1pt6_A 162 EEIKSIASE-----PTEKHFFNVSDELALVT 187 (213)
T ss_dssp HHHHHHSCS-----SHHHHEEEESSGGGGGG
T ss_pred HHHHHHhCC-----CchhcEEEeCCHHHHHH
Confidence 445544321 12468888876544544
No 18
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.63 E-value=5.8e-16 Score=136.96 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=120.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhhcccCC-C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQP-N 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~~l~~-~ 81 (375)
.++|+||.|.||.. ++|+.+++++..|+..+. ++..+||||+|++.+.++.|+|. +...+..+|..+.. +
T Consensus 7 div~vlD~SgSm~~-----~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~ 79 (194)
T 1mf7_A 7 DIAFLIDGSGSIIP-----HDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLL 79 (194)
T ss_dssp EEEEEEECCTTSCH-----HHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSEEEEECHHHHHHSCCHHHHHTTCCCCC
T ss_pred eEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCceEEEecCCcCCHHHHHHHHHhCcCCC
Confidence 68999999999974 689999999999998764 56789999999999999999986 44578888888874 8
Q ss_pred CCccHHHHHHHHHHHh-hccCC-CCCccEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCCcc---hHHHHHH
Q psy14660 82 GNINFMTGIRIAHLAL-KHRQG-KNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEVV---NTELLNT 155 (375)
Q Consensus 82 G~~~l~~gI~vA~laL-Khr~~-k~~~~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e~~---n~~kL~~ 155 (375)
|++++..||+.|...+ ....+ .....++||++.+.... ++..+...++.+++.||.|++||||.... +.+.|+.
T Consensus 80 g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~ 159 (194)
T 1mf7_A 80 GRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNT 159 (194)
T ss_dssp SCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHH
Confidence 9999999999998544 32111 11223444444444333 55555677889999999999999998753 3567776
Q ss_pred HHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 156 FISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
+... +.+.|+..+..-..|.+
T Consensus 160 iA~~-----~~~~~~~~~~~~~~l~~ 180 (194)
T 1mf7_A 160 IASK-----PPRDHVFQVNNFEALKT 180 (194)
T ss_dssp HSCS-----SHHHHEEEESSGGGGGG
T ss_pred HhCC-----CCcccEEEeCCHHHHHH
Confidence 6432 11358888876443433
No 19
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.63 E-value=1e-15 Score=134.99 Aligned_cols=164 Identities=15% Similarity=0.135 Sum_probs=118.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCH--HHHHHhhcccC-CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDV--GRILSKLHQVQ-PN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~--~~Il~~L~~l~-~~ 81 (375)
.++|+||.|.||... +|...++++..++..+. ++..+||||+|++.+++..|++... ..+...|..+. ++
T Consensus 11 div~vlD~SgSM~~~-----~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 83 (198)
T 1n3y_A 11 DIVFLIDGSGSISSR-----NFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQ 83 (198)
T ss_dssp EEEEEEECCTTSCHH-----HHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCCCCC
T ss_pred eEEEEEECCCCCCHH-----HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCccEEEecCccCCHHHHHHHHhcCcCCC
Confidence 589999999999864 46677788888887654 7899999999999999999996422 45677777775 67
Q ss_pred CCccHHHHHHHHHHH-hhccCC-CCCccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCcc---hHHHHHH
Q psy14660 82 GNINFMTGIRIAHLA-LKHRQG-KNHKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEVV---NTELLNT 155 (375)
Q Consensus 82 G~~~l~~gI~vA~la-LKhr~~-k~~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~~---n~~kL~~ 155 (375)
|++++..||+.|... ++...+ .....++||++++... .++..+...++.+++.||.|++||||.... +.+.|+.
T Consensus 84 g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~ 163 (198)
T 1n3y_A 84 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND 163 (198)
T ss_dssp SCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHH
T ss_pred CCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHH
Confidence 899999999999843 343211 1223444444444433 355567788899999999999999998752 4677887
Q ss_pred HHHhhCCCCCCCeeEEEecCCCchh
Q psy14660 156 FISTLNGKDGSGSHMVTVAVGPHLS 180 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp~g~~Ls 180 (375)
+... +.+.|+..+.....|.
T Consensus 164 iA~~-----~~g~~~~~~~~~~~l~ 183 (198)
T 1n3y_A 164 IASK-----PSQEHIFKVEDFDALK 183 (198)
T ss_dssp HSCS-----SSGGGEEEESSGGGGG
T ss_pred HHcC-----CCcccEEEeCCHHHHH
Confidence 7543 2356777776644343
No 20
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.63 E-value=1.7e-14 Score=147.11 Aligned_cols=146 Identities=13% Similarity=0.151 Sum_probs=116.6
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCC--------CCHHHHHHhhc
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--------SDVGRILSKLH 76 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT--------~D~~~Il~~L~ 76 (375)
.++||||.|.||. +.++||+..+.++..|+.. ..|.++||||+|++.+.+++|+| .+...+...|.
T Consensus 79 dvv~VLD~SGSM~---~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~ 152 (464)
T 4fx5_A 79 VEVIIIDCSGSMD---YPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVG 152 (464)
T ss_dssp EEEEEEECCGGGG---TTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHH
T ss_pred eEEEEEEcCcccC---CCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHH
Confidence 5899999999997 4589999999999999986 45889999999999999999987 68889999999
Q ss_pred ccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHH
Q psy14660 77 QVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNT 155 (375)
Q Consensus 77 ~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~ 155 (375)
.+.+.|++++..||..|...|+.++ +..+.||+|+++..+ .++..+.... +..+.+|.|++||||.. .+...|+.
T Consensus 153 ~L~~~GgT~l~~aL~~A~~~l~~~~--~~~~~IILLTDG~~~~~~~~~l~~~~-~a~~~~i~i~tiGiG~~-~d~~~L~~ 228 (464)
T 4fx5_A 153 RLHANGGTAMGRWLAQAGRIFDTAP--SAIKHAILLTDGKDESETPADLARAI-QSSIGNFTADCRGIGED-WEPKELRK 228 (464)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHTTCT--TSEEEEEEEESSCCTTSCHHHHHHHH-HHHTTTCEEEEEEESSS-SCHHHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHhcCC--CCCCEEEEEcCCCCCCCChHHHHHHH-HHhcCCCeEEEEEeCCc-cCHHHHHH
Confidence 9999999999999999999887654 333455555544333 2344444433 34578999999999986 45678888
Q ss_pred HHHhh
Q psy14660 156 FISTL 160 (375)
Q Consensus 156 fi~~v 160 (375)
+.+..
T Consensus 229 IA~~t 233 (464)
T 4fx5_A 229 IADAL 233 (464)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 87764
No 21
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.56 E-value=1.9e-14 Score=145.13 Aligned_cols=168 Identities=12% Similarity=0.166 Sum_probs=125.7
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~Il~~L~~l~~ 80 (375)
.+||+||.|.||.. ++|+.+++++..|++.+...++.++||||+|++.++++.|+|. |...++..|..+.+
T Consensus 11 divfvlD~SgSM~~-----~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~ 85 (509)
T 2odp_A 11 NLYLLLDASQSVSE-----NDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANY 85 (509)
T ss_dssp EEEEEEECSTTSCH-----HHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCG
T ss_pred eEEEEEeCCCccch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhccc
Confidence 48999999999975 5689999999999988766678999999999999999999987 99999999999976
Q ss_pred C-----CCccHHHHHHHHHHHhhccCC--CC------CccEEEEEEcCCCCC---ChHHHHHHHHHH------HhCCcEE
Q psy14660 81 N-----GNINFMTGIRIAHLALKHRQG--KN------HKMRIIAFVGSPVDL---EERELTKLAKRL------KKEKVNV 138 (375)
Q Consensus 81 ~-----G~~~l~~gI~vA~laLKhr~~--k~------~~~RIIvfvgSp~~~---d~~~l~~lakkL------Kk~~I~V 138 (375)
. |++++..||+.|...|+.... .. ...++||++++.... ++..+.+.++.+ ++.+|.|
T Consensus 86 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 165 (509)
T 2odp_A 86 KDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDI 165 (509)
T ss_dssp GGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEE
T ss_pred ccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEE
Confidence 5 889999999999987754221 00 124565666554432 234344444332 1889999
Q ss_pred EEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 139 DIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 139 diIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
++||||....+.+.|+.+....+ +..|+..+.....|..
T Consensus 166 ~~iGvG~~~~~~~~L~~iA~~~~----G~~~~~~~~~~~~l~~ 204 (509)
T 2odp_A 166 YAIGVGKLDVDWRELNELGSKKD----GERHAFILQDTKALHQ 204 (509)
T ss_dssp EEEEESSSCCCHHHHHHHSCCCT----TCCCEEEESSHHHHHH
T ss_pred EEEEcCCCcccHHHHHhhccCCC----CceeeEEecCHHHHHH
Confidence 99999987556788888865432 1358888877554433
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.56 E-value=2.5e-14 Score=143.32 Aligned_cols=169 Identities=13% Similarity=0.201 Sum_probs=123.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEe----cCCCCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA----TLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~----pLT~D~~~Il~~L~~l~~ 80 (375)
.++|+||.|.||.. +||+.+++++..|+..+...++..+||||+|++.+++++ ++|.|...+...|..+.+
T Consensus 3 div~vlD~SgSM~~-----~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 77 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA-----SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 77 (497)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCG
T ss_pred eEEEEEECCCCcch-----hhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcC
Confidence 48999999999976 899999999999999876677889999999999999998 888999999999999974
Q ss_pred -----CCCccHHHHHHHHHHHhhccCC--C---CCccEEEEEEcCCCCC---ChHHHHHHHHHH----------HhCCcE
Q psy14660 81 -----NGNINFMTGIRIAHLALKHRQG--K---NHKMRIIAFVGSPVDL---EERELTKLAKRL----------KKEKVN 137 (375)
Q Consensus 81 -----~G~~~l~~gI~vA~laLKhr~~--k---~~~~RIIvfvgSp~~~---d~~~l~~lakkL----------Kk~~I~ 137 (375)
+|++++..||+.|...|..+.. + ....++||++++.... ++......++.+ ++.+|.
T Consensus 78 ~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 157 (497)
T 1rrk_A 78 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 157 (497)
T ss_dssp GGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEE
T ss_pred ccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCee
Confidence 5789999999999988843321 0 1234555555454332 344443333333 344999
Q ss_pred EEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHh
Q psy14660 138 VDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDAL 183 (375)
Q Consensus 138 VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l 183 (375)
|++||+|... +.+.|+.+.+..+ +..|++.+.....|.+++
T Consensus 158 v~~igvG~~~-~~~~L~~iA~~~~----g~~~~~~~~~~~~l~~~~ 198 (497)
T 1rrk_A 158 VYVFGVGPLV-NQVNINALASKKD----NEQHVCKVKDMECLEDVF 198 (497)
T ss_dssp EEEEECSSSC-CHHHHHHHSCCCT----TCCCEEETTCHHHHHHHH
T ss_pred EEEecCCCcc-CHHHHHHHhcCCC----CcceEEEeCCHHHHhhhh
Confidence 9999999763 5677887764421 124888887544454433
No 23
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.55 E-value=3.6e-16 Score=137.50 Aligned_cols=147 Identities=16% Similarity=0.244 Sum_probs=112.0
Q ss_pred ceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecC-ceeEEecCCCCHHHHHHhhcccCCCC
Q psy14660 4 ESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNG 82 (375)
Q Consensus 4 EaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag-~a~vl~pLT~D~~~Il~~L~~l~~~G 82 (375)
-.++||||.|.||. ++||..++.++..|+... .++.++||||+|++ .+.+++|+|.+...+...|..+.++|
T Consensus 6 ~~vv~vlD~SgSM~-----~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g 78 (189)
T 2x31_A 6 RVLIFAVDASGSAA-----VARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGG 78 (189)
T ss_dssp CEEEEEEECCTTSC-----C--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCB
T ss_pred eEEEEEEECCCCCC-----chHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCC
Confidence 36899999999995 589999999999999754 37899999999997 68999999999999999999999999
Q ss_pred CccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh----------HHHHHHHHHHHhCCcEEEEEEecCCcchHHH
Q psy14660 83 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE----------RELTKLAKRLKKEKVNVDIVSFGEEVVNTEL 152 (375)
Q Consensus 83 ~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~----------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~k 152 (375)
++++..||+.|...|+....+..++.||+|+++..+... ..+..+++.+++.||.|++||||.. +...
T Consensus 79 ~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~--~~~~ 156 (189)
T 2x31_A 79 GTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMR--PNPA 156 (189)
T ss_dssp CCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHS--SCSS
T ss_pred CCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCC--CHHH
Confidence 999999999999888765433444455555443322211 1234567788999999999999976 2344
Q ss_pred HHHHHHh
Q psy14660 153 LNTFIST 159 (375)
Q Consensus 153 L~~fi~~ 159 (375)
|+.+.+.
T Consensus 157 L~~iA~~ 163 (189)
T 2x31_A 157 LVDLART 163 (189)
T ss_dssp SCSTTTE
T ss_pred HHHHHHh
Confidence 5544433
No 24
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.47 E-value=2.2e-13 Score=143.01 Aligned_cols=165 Identities=12% Similarity=0.190 Sum_probs=122.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC----CHHHHHHhhcccC-
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ- 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~----D~~~Il~~L~~l~- 79 (375)
.++|+||.|.||.. ++|+..++++..|+..+.......+||||+|++.+.+++++|. |...++.+|..+.
T Consensus 245 div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~ 319 (741)
T 3hrz_D 245 NIYLVLDGSGSIGA-----SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINY 319 (741)
T ss_dssp EEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCG
T ss_pred eEEEEeccCCcccc-----cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhccc
Confidence 48999999999975 5688999999999998766666789999999999999999998 9999999999997
Q ss_pred ----CCCCccHHHHHHHHHHHhhcc-----CCCCCccEEEEEEcCCCC---CChHHHHHH----------HHHHHhCCcE
Q psy14660 80 ----PNGNINFMTGIRIAHLALKHR-----QGKNHKMRIIAFVGSPVD---LEERELTKL----------AKRLKKEKVN 137 (375)
Q Consensus 80 ----~~G~~~l~~gI~vA~laLKhr-----~~k~~~~RIIvfvgSp~~---~d~~~l~~l----------akkLKk~~I~ 137 (375)
.+|++++..||+.|...|... .......++||++.+... .++...... ++.+++.+|.
T Consensus 320 ~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~ 399 (741)
T 3hrz_D 320 EDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLD 399 (741)
T ss_dssp GGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEE
T ss_pred ccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCee
Confidence 789999999999999877321 111112445555544422 244444332 2366889999
Q ss_pred EEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCch
Q psy14660 138 VDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHL 179 (375)
Q Consensus 138 VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~L 179 (375)
|++||||.. .+.+.|+++.+..++ ..|+..+..-..|
T Consensus 400 i~~igvG~~-~~~~~L~~ia~~~~g----~~~~~~~~~~~~L 436 (741)
T 3hrz_D 400 VYVFGVGPL-VNQVNINALASKKDN----EQHVFKVKDMENL 436 (741)
T ss_dssp EEEEECSSS-CCHHHHHHHSCCCTT----CCCEECBSSHHHH
T ss_pred EEEEeCCCc-CCHHHHHHHhcCCCC----cceEEEeCCHHHH
Confidence 999999975 456778877554221 2388888764433
No 25
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.43 E-value=1.9e-12 Score=115.84 Aligned_cols=155 Identities=15% Similarity=0.175 Sum_probs=111.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhhcccCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQPNG 82 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~~l~~~G 82 (375)
.++|+||.|.||. +.+|+..++++..|++.+.-..+..+||||+|++.+.+..+++. +...++.+|..+...|
T Consensus 23 DivfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~g 97 (199)
T 3zqk_A 23 DVAFVLEGSDKIG-----EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIRYQG 97 (199)
T ss_dssp EEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCCCCC
T ss_pred CEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCcCCC
Confidence 5899999999996 47899999999999998765578899999999999999999996 8999999999997554
Q ss_pred --CccHHHHHHHHHHH-hhccC-C-CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 83 --NINFMTGIRIAHLA-LKHRQ-G-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 83 --~~~l~~gI~vA~la-LKhr~-~-k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
+++++.||+.|... +.... . .+.++.||+|+++....+-.. + +.+|.|++||+|.. .+.+.|+.+.
T Consensus 98 g~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~~-------~-~~~v~v~~iGiG~~-~~~~~L~~iA 168 (199)
T 3zqk_A 98 GNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIKR-------L-PGDIQVVPIGVGPN-ANVQELERIG 168 (199)
T ss_dssp CSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCCC-------C-CTTEEEEEEEESTT-CCHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHHH-------H-hCCCEEEEEEcCCC-CCHHHHHHHh
Confidence 49999999998853 22111 1 123344555554433222111 1 37999999999974 5678888885
Q ss_pred HhhCCCCCCCeeEEEecCCCchhh
Q psy14660 158 STLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 158 ~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
. . +.+| .+..-..|.+
T Consensus 169 ~---~----~~~~-~~~~~~~L~~ 184 (199)
T 3zqk_A 169 W---P----NAPI-LIQDFETLPR 184 (199)
T ss_dssp T---T----SCCE-EESCTTTHHH
T ss_pred C---C----CceE-EeCCHHHHHH
Confidence 3 1 2344 5655444444
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.35 E-value=1.4e-12 Score=114.89 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=102.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHH--HHHHhhcccC-CC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVG--RILSKLHQVQ-PN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~--~Il~~L~~l~-~~ 81 (375)
.++|+||.|.||.. .+|+.+++++..|+..+ ..+..+||||+|++.+.+.+|||.... .+...+..+. .+
T Consensus 4 divfvlD~S~Sm~~-----~~~~~~k~~~~~~~~~l--~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~~~~ 76 (179)
T 1mjn_A 4 DLVFLFDGSMSLQP-----DEFQKILDFMKDVMKKC--SNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHML 76 (179)
T ss_dssp EEEEEEECBTTCCH-----HHHHHHHHHHHHHHHHT--TTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCC
T ss_pred cEEEEEeCCCCCCH-----HHHHHHHHHHHHHHHHh--CCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcccCC
Confidence 58999999999974 68999999999999875 233459999999999999999985322 3445555553 35
Q ss_pred CCccHHHHHHHHHH-HhhccCC--CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcch---HHHHHH
Q psy14660 82 GNINFMTGIRIAHL-ALKHRQG--KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVN---TELLNT 155 (375)
Q Consensus 82 G~~~l~~gI~vA~l-aLKhr~~--k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n---~~kL~~ 155 (375)
|+|+++.||+.|.. .+....+ .+.++.||+|+++..+ +.... .+..||.|++||+|..... .+.|+.
T Consensus 77 g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~-~~~~~------~~~~~i~i~~igvG~~~~~~~~~~~L~~ 149 (179)
T 1mjn_A 77 LLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEAT-DSGNI------DAAKDIIRYIIGIGKHFQTKESQETLHK 149 (179)
T ss_dssp BCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCS-SCSCC------GGGTTSEEEEEEESGGGCSHHHHHTTGG
T ss_pred CCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCC-CCcch------HHHCCCEEEEEEccccccccccHHHHHH
Confidence 88999999999985 3432211 1233445555544333 22211 2678999999999986542 244544
Q ss_pred HHHhhCCCCCCCeeEEEecCC
Q psy14660 156 FISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp~g 176 (375)
+. +. +.+.|+..+..-
T Consensus 150 iA----~~-~~~~~~~~~~~~ 165 (179)
T 1mjn_A 150 FA----SK-PASEFVKILDTF 165 (179)
T ss_dssp GS----CS-CHHHHEEEESSG
T ss_pred Hh----CC-ccHhcEEEeCCH
Confidence 42 21 224577777653
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.24 E-value=5.4e-12 Score=140.51 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=120.3
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCC--CHHHHHHhhccc-CCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQV-QPN 81 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~--D~~~Il~~L~~l-~~~ 81 (375)
.++|+||.|.||. +++|+..++++..|++.+. .+..+||||+|++.+.++.+||. +...+..++..+ ..+
T Consensus 132 DIvfvlD~SgSm~-----~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~~~g 204 (1095)
T 3k6s_A 132 DIVFLIDGSGSIS-----SRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQ 204 (1095)
T ss_dssp EEEEEEECCTTSC-----SHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCCCCC
T ss_pred cEEEEEcCCCCCC-----hhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhhccc
Confidence 5899999999996 5899999999999998753 34589999999999999999995 666778888888 567
Q ss_pred CCccHHHHHHHHHHHhhccC--CCCCccEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCc---chHHHHHH
Q psy14660 82 GNINFMTGIRIAHLALKHRQ--GKNHKMRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEV---VNTELLNT 155 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~--~k~~~~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~---~n~~kL~~ 155 (375)
|+++++.||+.|...+.... ......|+||++.++.. .++..+...++.+++.||.|++||+|... .+.+.|+.
T Consensus 205 G~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~ 284 (1095)
T 3k6s_A 205 GFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELND 284 (1095)
T ss_dssp SCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHT
T ss_pred CCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccccccccCHHHHHH
Confidence 88999999999975442211 11122445555544444 56677888999999999999999999862 24566776
Q ss_pred HHHhhCCCCCCCeeEEEecCCC
Q psy14660 156 FISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 156 fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
+... ..+.|+..+..-.
T Consensus 285 IAs~-----p~g~~vf~v~d~~ 301 (1095)
T 3k6s_A 285 IASK-----PSQEHIFKVEDFD 301 (1095)
T ss_dssp TSCS-----STTTSCCCBSCSG
T ss_pred HHcC-----CCCceEEEcCCHH
Confidence 6432 2245888776543
No 28
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=98.99 E-value=6.8e-10 Score=114.60 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=84.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHH--HHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccC--C
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDA--VNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ--P 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~A--v~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~--~ 80 (375)
.++||||.|.||..+|.. +|+.+ +++ +-.|+. ..+.++||||+|++ ..+.+|+|.+.. +...+..+. +
T Consensus 370 ~v~lvvD~SgSM~~~~~~-~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~-~~~~~~~t~~~~-l~~~l~~l~~~~ 441 (538)
T 1yvr_A 370 RFLLAIDVSASMNQRVLG-SILNA-SVVAAAMCMLV----ARTEKDSHMVAFSD-EMLPCPITVNML-LHEVVEKMSDIT 441 (538)
T ss_dssp CEEEEEECSGGGGSBSTT-SSCBH-HHHHHHHHHHH----HHHCSSEEEEEESS-SEECCSCCTTSC-HHHHHHHHTTCC
T ss_pred eEEEEEECccccCCCCCC-CcHHH-HHHHHHHHHHH----hccCCceEEEEECC-CceEcCCCCccc-HHHHHHHHhcCC
Confidence 588999999999998876 67776 443 222222 34678999999997 456678887644 555555443 6
Q ss_pred CCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhC-C--cEEEEEEecCCc
Q psy14660 81 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-K--VNVDIVSFGEEV 147 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~-~--I~VdiIgfG~e~ 147 (375)
+|+|++..+|..|... +.....||||+++..+.+..++...++++++. | |++++||||+..
T Consensus 442 ~GgT~i~~aL~~a~~~------~~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~ 505 (538)
T 1yvr_A 442 MGSTDCALPMLWAQKT------NTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNG 505 (538)
T ss_dssp CSCCCTTHHHHHHHHT------TCCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSS
T ss_pred CCCCcHHHHHHHHHhc------cCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCC
Confidence 7899999999988742 12335666666553332222344445555533 4 666999999854
No 29
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.89 E-value=4.3e-09 Score=115.29 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=81.4
Q ss_pred eEEEEEeCCccccCCCCC-CCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE-----------------------
Q psy14660 5 STMICVDNSDFMRNGDFL-PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV----------------------- 60 (375)
Q Consensus 5 aivI~lDnSesMrngD~~-PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v----------------------- 60 (375)
.+|||||.|.||...++. ++||+..++++..|+... ..+|.++||||+|++.+++
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L-~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKI-TSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHH-HTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHh-hcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 489999999999986543 359999999999999654 4588999999999985432
Q ss_pred ----------------EecCCCCHHHH---HHhhcc----------cCCCCCccHHHHHHHHHHHhhccCCCCCccEEEE
Q psy14660 61 ----------------LATLTSDVGRI---LSKLHQ----------VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIA 111 (375)
Q Consensus 61 ----------------l~pLT~D~~~I---l~~L~~----------l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIv 111 (375)
++|||.|...| ...|.. +.+.|+++++.||..|...|+....... +|+||
T Consensus 305 w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~-~kvII 383 (893)
T 2ww8_A 305 WNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNS-QKVIF 383 (893)
T ss_dssp SCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSS-EEEEE
T ss_pred cccccccccccccccccccccCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCC-CeEEE
Confidence 24788898555 466764 3457899999999999998874322233 45555
Q ss_pred EEcCC
Q psy14660 112 FVGSP 116 (375)
Q Consensus 112 fvgSp 116 (375)
|+.++
T Consensus 384 LLTDG 388 (893)
T 2ww8_A 384 HITDG 388 (893)
T ss_dssp EEESS
T ss_pred EEcCC
Confidence 55443
No 30
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=98.69 E-value=1.4e-07 Score=97.71 Aligned_cols=128 Identities=15% Similarity=0.112 Sum_probs=82.2
Q ss_pred eEEEEEeCCccccCCCC----CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccC-
Q psy14660 5 STMICVDNSDFMRNGDF----LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ- 79 (375)
Q Consensus 5 aivI~lDnSesMrngD~----~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~- 79 (375)
.++||||.|.||..+.. ++++++++.... .++ ....++||||+|++. ...+++|.+ ..++..|..+.
T Consensus 364 ~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la-~~~-----~r~~d~v~lv~Fs~~-~~~~~~~~~-~~l~~~l~~l~~ 435 (535)
T 2nvo_A 364 RHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS-LIA-----LRTEPDALTMGFAEQ-FRPLGITPR-DTLESAMQKAQS 435 (535)
T ss_dssp EEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH-HHH-----HHHSSEEEEEEEBSS-EEECCCCTT-CCHHHHHHHTCC
T ss_pred eEEEEEECCccccCCCCCCCCcccHHHHHHHHH-HHH-----cCcCCceEEEEECCc-ceEcCCCcc-hhHHHHHHHHhh
Confidence 47899999999987332 367777554322 222 123569999999984 335677766 44555555553
Q ss_pred -CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhC---CcEEEEEEecCC
Q psy14660 80 -PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE---KVNVDIVSFGEE 146 (375)
Q Consensus 80 -~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~---~I~VdiIgfG~e 146 (375)
+.|+|++..+|..|.. ++ ....+||||++...+.....+..+++++++. +++|.+||+|..
T Consensus 436 ~~~ggTdi~~~l~~a~~---~~---~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~ 500 (535)
T 2nvo_A 436 VSFGGTDCAQPILWAAQ---ER---LDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTAT 500 (535)
T ss_dssp SSBCCCCTTHHHHHHHH---TT---CCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCS
T ss_pred CCCCCccHHHHHHHHHH---hc---CCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCC
Confidence 3689999999877642 22 2335777777654443322344555555654 899999999975
No 31
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.60 E-value=1e-07 Score=90.19 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=75.9
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---eeEE-ecCCCCHHHHHHhhcccCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VEVL-ATLTSDVGRILSKLHQVQP 80 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~vl-~pLT~D~~~Il~~L~~l~~ 80 (375)
.|+|+||.|.||. .||.+.+.++..|+.........++||||+|++. ++++ .|+|.+. .+...|..+..
T Consensus 136 ~vvfLVDtSgSM~------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~a 208 (242)
T 3rag_A 136 HLVVCLDTSASMR------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVA 208 (242)
T ss_dssp EEEEEEECSGGGT------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCC
T ss_pred CEEEEEECcccHH------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCC
Confidence 5899999999996 3899999999999987655556899999999995 4555 5999998 77788999999
Q ss_pred CCCccHHHHHHHHHHHh-hcc
Q psy14660 81 NGNINFMTGIRIAHLAL-KHR 100 (375)
Q Consensus 81 ~G~~~l~~gI~vA~laL-Khr 100 (375)
+|.|.++.||..|...+ +|+
T Consensus 209 gG~Tplg~AL~~A~~~~~~~~ 229 (242)
T 3rag_A 209 RGGTPTGPAIDHAADLLLSHA 229 (242)
T ss_dssp CSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHh
Confidence 99999999999998766 354
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.44 E-value=1.8e-06 Score=93.13 Aligned_cols=163 Identities=18% Similarity=0.154 Sum_probs=112.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEe--c-------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA--T------------------- 63 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~--p------------------- 63 (375)
..++|||+|.+.. +|++.++++...+.. ..|..+||||||++...+.- .
T Consensus 134 ~~vFvIDvS~~a~-------~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q 203 (769)
T 2nut_A 134 IFLYVVDTCMEDE-------DLQALKESMQMSLSL---LPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQ 203 (769)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHTT---SCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHH
T ss_pred EEEEEEECCccHH-------HHHHHHHHHHHHHHh---CCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHH
Confidence 4789999998754 689999999888864 56678999999997654410 0
Q ss_pred ------CC-----------CC----------------HHHHHHhhcccCC---------CCCccHHHHHHHHHHHhhccC
Q psy14660 64 ------LT-----------SD----------------VGRILSKLHQVQP---------NGNINFMTGIRIAHLALKHRQ 101 (375)
Q Consensus 64 ------LT-----------~D----------------~~~Il~~L~~l~~---------~G~~~l~~gI~vA~laLKhr~ 101 (375)
++ .| ...|...|+.|.. .....++.||++|..+|+..-
T Consensus 204 ~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~ 283 (769)
T 2nut_A 204 LQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF 283 (769)
T ss_dssp HHHHHC-------------------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc
Confidence 11 11 1234455555543 356899999999999998642
Q ss_pred CCCCccEEEEEEcCCCCCCh-------------------HH-----------HHHHHHHHHhCCcEEEEEEecCCcchHH
Q psy14660 102 GKNHKMRIIAFVGSPVDLEE-------------------RE-----------LTKLAKRLKKEKVNVDIVSFGEEVVNTE 151 (375)
Q Consensus 102 ~k~~~~RIIvfvgSp~~~d~-------------------~~-----------l~~lakkLKk~~I~VdiIgfG~e~~n~~ 151 (375)
.+...||++|++++-+..+ ++ ..++|+++.+++|.||+..++.......
T Consensus 284 -~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla 362 (769)
T 2nut_A 284 -PNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLL 362 (769)
T ss_dssp -CSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHH
T ss_pred -cCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChH
Confidence 2344899999988764211 11 2458999999999999999998766677
Q ss_pred HHHHHHHhhCCCCCCCeeEEEecCCC--chhhHhh
Q psy14660 152 LLNTFISTLNGKDGSGSHMVTVAVGP--HLSDALI 184 (375)
Q Consensus 152 kL~~fi~~vn~~~~~~Sh~v~vp~g~--~Lsd~l~ 184 (375)
-|..+++.++ -+++..+.-. .+.+.+.
T Consensus 363 ~l~~l~~~TG------G~~~~~~~F~~~~~~~~l~ 391 (769)
T 2nut_A 363 EMKCCPNLTG------GYMVMGDSFNTSLFKQTFQ 391 (769)
T ss_dssp HHTHHHHHSS------CCEEEESCSSSHHHHHHHH
T ss_pred HHHHHhhcCC------ceEEEcCCCchhhHHHHHH
Confidence 7887877643 3555556532 2555444
No 33
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.19 E-value=1.8e-05 Score=85.94 Aligned_cols=148 Identities=13% Similarity=0.128 Sum_probs=102.1
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE-----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL----------------------- 61 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl----------------------- 61 (375)
..++|||+|.++.+. ..|++.++++...+...-..+|..+||||||.....+.
T Consensus 189 ~yvFvIDvs~~av~~----g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~d 264 (810)
T 1pcx_A 189 TYCFLIDVSQSSIKS----GLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 264 (810)
T ss_dssp EEEEEEECSHHHHHH----THHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred EEEEEEECChHHHhh----hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccc
Confidence 479999999887431 14677777777776543233346899999998754332
Q ss_pred -------------ecCCCCHHHHHHhhcccC------CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh-
Q psy14660 62 -------------ATLTSDVGRILSKLHQVQ------PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE- 121 (375)
Q Consensus 62 -------------~pLT~D~~~Il~~L~~l~------~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~- 121 (375)
+|+......|...|+.|. ..+...++.||++|..+|++. ..||++|++++-+..+
T Consensus 265 l~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~-----GGrI~~F~sg~pt~GpG 339 (810)
T 1pcx_A 265 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-----GGKIIVVSGTLPNLGIG 339 (810)
T ss_dssp TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT-----CEEEEEEESSCCCSSTT
T ss_pred cccccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc-----CCEEEEEecCCCCCCCC
Confidence 222233444444555442 236789999999999999853 3799999988653211
Q ss_pred -------------------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 122 -------------------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 122 -------------------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+--.++|+++.+++|.||+..++.......-|..+++.++
T Consensus 340 ~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TG 404 (810)
T 1pcx_A 340 KLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 404 (810)
T ss_dssp CCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTT
T ss_pred cccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCC
Confidence 0135789999999999999999987666777787777643
No 34
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.13 E-value=2.3e-05 Score=72.70 Aligned_cols=156 Identities=11% Similarity=0.122 Sum_probs=102.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc-eeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~-a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
.+++|+|.|.||..- ++..+..+..|++..-+.+...|+|+++|.+. .....++|.|...+...+..+...|+
T Consensus 5 Dl~fl~D~S~SM~~d------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~ 78 (212)
T 2iue_A 5 DLYFLMGLSGSAQGH------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGK 78 (212)
T ss_dssp EEEEEEECCGGGTTT------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCC
T ss_pred EEEEEEeCCCcchhH------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCC
Confidence 479999999999853 77888888888877655566789999999986 45589999999999999999987765
Q ss_pred ccHH----HHHHHHHHHhhccCCCCCccEEEEEEcCCCCC---Ch----------------------------HHHHHHH
Q psy14660 84 INFM----TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL---EE----------------------------RELTKLA 128 (375)
Q Consensus 84 ~~l~----~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~---d~----------------------------~~l~~la 128 (375)
.+.. .||..|........-.+ ..|+|||+++..-. |. ..+..+.
T Consensus 79 ~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~ 157 (212)
T 2iue_A 79 LATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLA 157 (212)
T ss_dssp SSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHH
T ss_pred CCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHH
Confidence 4332 34433331111111122 46888888553321 11 2567789
Q ss_pred HHHHhCCcEEE-EEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 129 KRLKKEKVNVD-IVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 129 kkLKk~~I~Vd-iIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
++|+++||.+. .|.- ......+.+++.+. ++....+...
T Consensus 158 ~~l~~~~i~~ifavt~----~~~~~Y~~l~~~i~-----~s~v~~L~~d 197 (212)
T 2iue_A 158 SKLAENNIQPIFVVPS----RMVKTYEKLTTFIP-----KLTIGELSDD 197 (212)
T ss_dssp HHHHHHTCEEEEEEEH----HHHHHHHHHHHHST-----TCEEEEESSC
T ss_pred HHHHhcCCcEEEEEcc----chhHHHHHHHHHcc-----cceeeeecCC
Confidence 99999998753 3321 22344555655553 3555555443
No 35
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=98.07 E-value=3e-05 Score=85.37 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=102.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE------------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------ 60 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v------------------------ 60 (375)
..++|||+|.+..+. ..|++.++++...+...-..+|..+||||||.....+
T Consensus 305 vyvFvIDvS~~av~~----g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsd 380 (926)
T 1m2v_B 305 TYCFLIDVSQSSIKS----GLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 380 (926)
T ss_dssp BEEEEEECSHHHHHS----CHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECC
T ss_pred EEEEEEECCHHHHhh----hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccc
Confidence 479999999887431 2466777777766643322234578999999864332
Q ss_pred ------------EecCCCCHHHHHHhhcccC------CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC--
Q psy14660 61 ------------LATLTSDVGRILSKLHQVQ------PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE-- 120 (375)
Q Consensus 61 ------------l~pLT~D~~~Il~~L~~l~------~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d-- 120 (375)
++++......|...|+.|. ......++.||++|..+|++. ..||++|++++-+..
T Consensus 381 l~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~-----GGrI~~F~sg~Pt~GpG 455 (926)
T 1m2v_B 381 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV-----GGKIIVVSGTLPNLGIG 455 (926)
T ss_dssp CSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT-----CEEEEEEESSCCCSSTT
T ss_pred cccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh-----CCEEEEEecCCCCCCCC
Confidence 2233334555555555552 235789999999999999863 379999998874311
Q ss_pred ---------------hHH---------HHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 121 ---------------ERE---------LTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 121 ---------------~~~---------l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
++. -.++|+++.+++|.||+..++.......-|..+++.++
T Consensus 456 ~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TG 520 (926)
T 1m2v_B 456 KLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 520 (926)
T ss_dssp CCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTT
T ss_pred cccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCC
Confidence 111 35789999999999999999987666777777777643
No 36
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=97.94 E-value=0.00018 Score=77.70 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=101.5
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEE--ec-------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL--AT------------------- 63 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl--~p------------------- 63 (375)
..++|||+|.+.. .|++.++++...++. ..|..+||||||.....+. .+
T Consensus 123 ~~vFvIDvs~~~~-------~l~~l~~sl~~~L~~---Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q 192 (768)
T 1m2o_A 123 IFFFVVDLTSETE-------NLDSLKESIITSLSL---LPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEA 192 (768)
T ss_dssp EEEEEEECCSCHH-------HHHHHHHHHHHHHHT---SCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHH
T ss_pred EEEEEEECCcCHH-------HHHHHHHHHHHHHHh---CCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHH
Confidence 4689999998874 488888888888764 5667899999998644331 11
Q ss_pred -------CCC----C---------------------------HHHHHHhhcccCC---------CCCccHHHHHHHHHHH
Q psy14660 64 -------LTS----D---------------------------VGRILSKLHQVQP---------NGNINFMTGIRIAHLA 96 (375)
Q Consensus 64 -------LT~----D---------------------------~~~Il~~L~~l~~---------~G~~~l~~gI~vA~la 96 (375)
++. | ...|...|+.|.. .....++.||++|..+
T Consensus 193 ~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~~~~G~Al~~A~~l 272 (768)
T 1m2o_A 193 LTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLL 272 (768)
T ss_dssp HHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTCCCSCSCCCTTBCCCCCHHHHHHHHHHH
T ss_pred HHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhccccccccCCCCCCcccHHHHHHHHHHH
Confidence 100 1 1123444555533 2456899999999999
Q ss_pred hhccCCCCCccEEEEEEcCCCCCCh-------------------H-----------HHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 97 LKHRQGKNHKMRIIAFVGSPVDLEE-------------------R-----------ELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 97 LKhr~~k~~~~RIIvfvgSp~~~d~-------------------~-----------~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
|+..- .+...||++|++++-+..+ + -..++|+++.+++|.||+..++..
T Consensus 273 l~~~~-~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~ 351 (768)
T 1m2o_A 273 LQGCY-KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYD 351 (768)
T ss_dssp HHHHC-TTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred Hhhcc-CCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCC
Confidence 98642 2344899999988764210 1 124689999999999999999987
Q ss_pred cchHHHHHHHHHhhC
Q psy14660 147 VVNTELLNTFISTLN 161 (375)
Q Consensus 147 ~~n~~kL~~fi~~vn 161 (375)
.....-|..+++.++
T Consensus 352 ~~dla~l~~l~~~TG 366 (768)
T 1m2o_A 352 QIGMSEMKQLTDSTG 366 (768)
T ss_dssp CCSHHHHHHHHHHHT
T ss_pred ccChHHHhhHhhcCC
Confidence 666777777777654
No 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.79 E-value=0.00018 Score=76.98 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=92.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---ee----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VE---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~---------------------- 59 (375)
.+++++|+|.||.. =|+..+.....|++..-+.-..-|+|+.+|.+. ++
T Consensus 113 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~ 186 (690)
T 3fcs_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (690)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCC
T ss_pred cEEEEecCCcchHH------HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCC
Confidence 47899999999984 345555555555555444445689999999872 11
Q ss_pred -----EEecCCCCHHHHHHhhcccCCCCCccHH----HHHHHHHHHhhccCCCCCccEEEEEEcCCCCC---Ch------
Q psy14660 60 -----VLATLTSDVGRILSKLHQVQPNGNINFM----TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL---EE------ 121 (375)
Q Consensus 60 -----vl~pLT~D~~~Il~~L~~l~~~G~~~l~----~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~---d~------ 121 (375)
.+.+||.|...+...+..+.+.|+.+.- .||-.|..-.+...=.....|||||+++..-. |.
T Consensus 187 ~f~f~~~l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~agDg~l~gi~ 266 (690)
T 3fcs_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (690)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CccceeecccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCccccCCCcccccee
Confidence 3579999999999999999888765432 33322221012111112346888888553321 11
Q ss_pred -----------------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 122 -----------------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 122 -----------------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
-.+..++++|+++||.+............+.|..+|
T Consensus 267 ~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i 325 (690)
T 3fcs_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI 325 (690)
T ss_dssp SCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHS
T ss_pred cCCCcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhc
Confidence 127889999999999766555554333345555443
No 38
>1p9c_A 26S proteasome non-ATPase regulatory subunit 4; alpha helix, hairpin loop, ligand binding protein; NMR {Homo sapiens} SCOP: j.105.1.1 PDB: 1p9d_S 1uel_B
Probab=97.70 E-value=9.3e-06 Score=58.22 Aligned_cols=27 Identities=63% Similarity=0.943 Sum_probs=23.2
Q ss_pred CCCCCCCCCChHHHHHHHHHcccCCCC
Q psy14660 274 GGQPDFATMTEEEQIAFAMQMSMQDTQ 300 (375)
Q Consensus 274 ~~~~~~~~m~ee~~~~~a~~ms~~~~~ 300 (375)
...+++.+||||+||++|||||||+..
T Consensus 11 ~~~~d~~~mteeeqla~ALqMSmq~~~ 37 (45)
T 1p9c_A 11 TGLPDLSSMTEEEQIAYAMQMSLQGAE 37 (45)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHTSSSS
T ss_pred CCCCchhccCchHHHHHHHHhcccccc
Confidence 445688899999999999999999663
No 39
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.58 E-value=0.0011 Score=71.43 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=95.0
Q ss_pred eEEEEEeCCcccc-CCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeE-----------------------
Q psy14660 5 STMICVDNSDFMR-NGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV----------------------- 60 (375)
Q Consensus 5 aivI~lDnSesMr-ngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~v----------------------- 60 (375)
..+++||+|..-. +| =|++.++++...+... -.++..+||||||.....+
T Consensus 162 ~yvFvIDvs~~a~~~g-----~l~~~~~sl~~~L~~l-p~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 162 VYLFVLDVSHNAVEAG-----YLTILCQSLLENLDKL-PGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFL 235 (751)
T ss_dssp EEEEEEECSHHHHHHT-----HHHHHHHHHHHHTTTS-SCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTS
T ss_pred EEEEEEEccHhhhhhh-----HHHHHHHHHHHHHHhc-CCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCC
Confidence 4688999996543 22 2456666666555421 2233337999999853221
Q ss_pred ------EecCCCCHHHHHHhhcccC---CC---CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChH------
Q psy14660 61 ------LATLTSDVGRILSKLHQVQ---PN---GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER------ 122 (375)
Q Consensus 61 ------l~pLT~D~~~Il~~L~~l~---~~---G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~------ 122 (375)
++|+......|...|..|. .. -...++.||++|..+|++. ..||++|++++-+..++
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~-----GGrI~~F~sg~pt~GpG~l~~r~ 310 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT-----GGRVSVFQTQLPSLGAGLLQSRE 310 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT-----CEEEEEEECSCCCSSTTCCCCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC-----CCEEEEEecCCCCCCCCcccccc
Confidence 2344445555655565552 11 3478999999999999753 47999999876542111
Q ss_pred -------------------HHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 123 -------------------ELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 123 -------------------~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
-..++|+++.+++|.||+..++...-...-|..+++.+
T Consensus 311 ~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~T 367 (751)
T 3eh1_A 311 DPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYS 367 (751)
T ss_dssp CSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTT
T ss_pred ccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhc
Confidence 24678999999999999999987655556666666553
No 40
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.56 E-value=0.0013 Score=71.20 Aligned_cols=148 Identities=19% Similarity=0.222 Sum_probs=98.8
Q ss_pred eEEEEEeCCccc-cCCCCCCCHHHHHHHHHHHHHHhhccC----CCCCcEEEEEecCcee--------------------
Q psy14660 5 STMICVDNSDFM-RNGDFLPTRLQAQQDAVNLVCHSKTRS----NPENNVGLLAMADSVE-------------------- 59 (375)
Q Consensus 5 aivI~lDnSesM-rngD~~PsRL~Aq~~Av~~~v~~k~~~----NPe~~VGLVt~ag~a~-------------------- 59 (375)
..+++||+|..- .+|. |.+.++++...+...-.. .|..+||||||.....
T Consensus 175 ~y~FvIDvs~~av~sg~-----l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 175 AFIFMIDVSYNAIRTGL-----VRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp EEEEEEECSHHHHHTTH-----HHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred EEEEEEECchhhccchH-----HHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 467899999764 3332 667778877777542110 1236899999985321
Q ss_pred ---------EEecCCCCHHHHHHhhccc------CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcC-CCCC----
Q psy14660 60 ---------VLATLTSDVGRILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDL---- 119 (375)
Q Consensus 60 ---------vl~pLT~D~~~Il~~L~~l------~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgS-p~~~---- 119 (375)
.++|+......|...|+.| .+..++-++.+|+.|.++++.. +...||++|+++ |...
T Consensus 250 d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~ 326 (766)
T 3eh2_A 250 DMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPGK 326 (766)
T ss_dssp TCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTTC
T ss_pred hhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcc
Confidence 1233444455565555555 2335678999999999999863 234899999988 6521
Q ss_pred -----C----------------hHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 120 -----E----------------ERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 120 -----d----------------~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
+ .+-..++|+++.+++|.||+..++...-...-|..++..+
T Consensus 327 l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~T 388 (766)
T 3eh2_A 327 LKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLT 388 (766)
T ss_dssp CCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHT
T ss_pred cccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhc
Confidence 1 0223689999999999999999987665566666666653
No 41
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.53 E-value=8.9e-05 Score=79.30 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=92.2
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---ee----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VE---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~---------------------- 59 (375)
.+++++|+|.||.. =|+..+.....|++..-+.-..-|+|+.+|.+. |+
T Consensus 106 Dly~LmD~S~SM~d------di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~ 179 (687)
T 3k6s_B 106 DLYYLMDLSYSMLD------DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPP 179 (687)
T ss_dssp EEEEEEECSSTTHH------HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCC
T ss_pred eEEEEEcCCcchHH------HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCc
Confidence 47899999999984 344455555555555545556789999999872 22
Q ss_pred ----EEecCCCCHHHHHHhhcccCCCCCccHH-HHHHHHHHHh---hccCCCCCccEEEEEEcCCCCC---Ch-------
Q psy14660 60 ----VLATLTSDVGRILSKLHQVQPNGNINFM-TGIRIAHLAL---KHRQGKNHKMRIIAFVGSPVDL---EE------- 121 (375)
Q Consensus 60 ----vl~pLT~D~~~Il~~L~~l~~~G~~~l~-~gI~vA~laL---Khr~~k~~~~RIIvfvgSp~~~---d~------- 121 (375)
.+.+||.|...+...++.+.+.|+.+.- .++...+.|+ +...=.+ ..|||||+++..-. |.
T Consensus 180 f~f~~~l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~ 258 (687)
T 3k6s_B 180 FAFRHVLKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILT 258 (687)
T ss_dssp CSCEEEEEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCC
T ss_pred ccceeecccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccccCCCccccceec
Confidence 2578999999999999999888765442 2233222333 1111112 46888888653321 11
Q ss_pred ---------------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHH
Q psy14660 122 ---------------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 122 ---------------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
-.+..++++|+++||.+.+..........+.|..+|
T Consensus 259 pndg~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i 315 (687)
T 3k6s_B 259 PNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEII 315 (687)
T ss_dssp CCCSCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHS
T ss_pred CCCCccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhc
Confidence 126678999999999766555544333344444443
No 42
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.50 E-value=0.00063 Score=73.56 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=97.6
Q ss_pred eEEEEEeCCccc-cCCCCCCCHHHHHHHHHHHHHHhhcc----CCCCCcEEEEEecCceeE-------------------
Q psy14660 5 STMICVDNSDFM-RNGDFLPTRLQAQQDAVNLVCHSKTR----SNPENNVGLLAMADSVEV------------------- 60 (375)
Q Consensus 5 aivI~lDnSesM-rngD~~PsRL~Aq~~Av~~~v~~k~~----~NPe~~VGLVt~ag~a~v------------------- 60 (375)
..+++||+|..- .+| -|++.++++...+...-. ..+..+||||||.....+
T Consensus 179 ~y~FvIDvs~~av~sg-----~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 179 AFIFMIDVSYSNIKNG-----LVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp EEEEEEECSHHHHHTT-----HHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred EEEEEEEcchhhccch-----HHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 467899999764 443 367888888777754211 011258999999843211
Q ss_pred ----------EecCCCCHHHHHHhhccc------CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcC-CCCCCh--
Q psy14660 61 ----------LATLTSDVGRILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDLEE-- 121 (375)
Q Consensus 61 ----------l~pLT~D~~~Il~~L~~l------~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgS-p~~~d~-- 121 (375)
++|+......|...|..| ....++-++.+|+.|.++++... ...||++|+++ |....+
T Consensus 254 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~---~GGkI~~F~s~lP~t~GpG~ 330 (770)
T 3efo_B 254 EVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAAD---CPGKLFIFHSSLPTAEAPGK 330 (770)
T ss_dssp SCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHT---CCEEEEEEECSCCCSSSTTC
T ss_pred cccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCC---CCcEEEEEecCCCCcCCCcc
Confidence 223333444555555554 22356778999999999998632 34799999988 652111
Q ss_pred -----------------------HHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 122 -----------------------RELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 122 -----------------------~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
+-..++|+++.+++|.||+..++...-...-|..++..+
T Consensus 331 l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~T 392 (770)
T 3efo_B 331 LKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLT 392 (770)
T ss_dssp CCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHT
T ss_pred ccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhc
Confidence 123579999999999999999987655566666666654
No 43
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.20 E-value=0.0025 Score=65.21 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=86.8
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---ee----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VE---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~---------------------- 59 (375)
.+++++|+|.||.+ =|+..+.....|.+..-+.-..-++|+.+|.+. |+
T Consensus 124 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f 197 (454)
T 3vi3_B 124 DLYYLMDLSYSMKD------DLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPF 197 (454)
T ss_dssp EEEEEEECSGGGHH------HHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCC
T ss_pred eEEEEecCCcchhh------HHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCc
Confidence 47899999999984 466666666777777666667889999999873 11
Q ss_pred ---EEecCCCCHHHHHHhhcccCCCCCccHH----HHHHHHHHHhhccCCCCCccEEEEEEcCCCC---CC---------
Q psy14660 60 ---VLATLTSDVGRILSKLHQVQPNGNINFM----TGIRIAHLALKHRQGKNHKMRIIAFVGSPVD---LE--------- 120 (375)
Q Consensus 60 ---vl~pLT~D~~~Il~~L~~l~~~G~~~l~----~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~---~d--------- 120 (375)
.+.+||.|...+...+....+.|+.+.- .||-.|..--+...-.+ ..|||||+++..- .|
T Consensus 198 ~fr~~l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~igWR~-a~rllV~~TDa~fH~agDgkL~GIv~P 276 (454)
T 3vi3_B 198 SYKNVLSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLP 276 (454)
T ss_dssp SEEEEEEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSC
T ss_pred ceeeeeecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccccCCcc-ceEEEEEECCCCcCcCCCccccceecC
Confidence 3789999999999999999888765442 22222211011111122 4688888865321 11
Q ss_pred -------------------hHHHHHHHHHHHhCCcEE
Q psy14660 121 -------------------ERELTKLAKRLKKEKVNV 138 (375)
Q Consensus 121 -------------------~~~l~~lakkLKk~~I~V 138 (375)
--.+-.++++|.++||.+
T Consensus 277 NDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~ 313 (454)
T 3vi3_B 277 NDGQCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQT 313 (454)
T ss_dssp CCCCCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEE
T ss_pred CCCccEeCCCcccccccCCCCCHHHHHHHHHhcCCcE
Confidence 114778999999999864
No 44
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.04 E-value=0.004 Score=63.97 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=86.0
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCce---e----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV---E---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a---~---------------------- 59 (375)
.+++++|+|.||.. =|+..+.....|.+..-+.-..-++|+.+|.+.+ +
T Consensus 113 DLy~LmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p 186 (472)
T 3t3p_B 113 DIYYLMDLSYSMKD------DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLP 186 (472)
T ss_dssp EEEEEEECSGGGHH------HHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCC
T ss_pred eEEEEEccCcchHH------HHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCC
Confidence 47899999999984 4566666667777776666678899999998741 1
Q ss_pred -----EEecCCCCHHHHHHhhcccCCCCCccHH----HHHHHHHHHhhccCCCCCccEEEEEEcCCCCC-----------
Q psy14660 60 -----VLATLTSDVGRILSKLHQVQPNGNINFM----TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL----------- 119 (375)
Q Consensus 60 -----vl~pLT~D~~~Il~~L~~l~~~G~~~l~----~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~----------- 119 (375)
.+.+||.|...+...+.++.+.|+.+.- .||-.|..--+...=.....|||||+++..-.
T Consensus 187 ~f~fr~~l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~agDgkL~GIv 266 (472)
T 3t3p_B 187 MFGYKHVLTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHIALDGRLAGIV 266 (472)
T ss_dssp CCSEEEEEEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCCTTGGGGGTCC
T ss_pred CcceeEeeccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCcCCCcccccee
Confidence 2678999999999999999888765442 23322221001111112346888888543210
Q ss_pred ---------------------ChHHHHHHHHHHHhCCcEE
Q psy14660 120 ---------------------EERELTKLAKRLKKEKVNV 138 (375)
Q Consensus 120 ---------------------d~~~l~~lakkLKk~~I~V 138 (375)
|--.+-.+.++|.++||.+
T Consensus 267 ~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~ 306 (472)
T 3t3p_B 267 QPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINL 306 (472)
T ss_dssp CCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEE
T ss_pred cCCCCceEECCCCcccccccCCCCCHHHHHHHHHhcCccE
Confidence 1114778999999999864
No 45
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.75 E-value=0.015 Score=60.24 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=98.4
Q ss_pred eEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCc---ee----------------------
Q psy14660 5 STMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VE---------------------- 59 (375)
Q Consensus 5 aivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~---a~---------------------- 59 (375)
.+++++|+|.||.. =|+..+.....|.+..-+....-++|+.+|.+. |+
T Consensus 134 DLyyLmDlS~SM~d------dl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~ 207 (503)
T 3v4v_B 134 DLYYLMDLSYSMKD------DLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSP 207 (503)
T ss_dssp EEEEEEECSGGGHH------HHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCC
T ss_pred eEEEEEecCcchhh------HHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCC
Confidence 47899999999984 566777777777777766677889999999863 12
Q ss_pred ----EEecCCCCHHHHHHhhcccCCCCCccHH----HHHHHHH---HHhhccCCCCCccEEEEEEcCCCCC---------
Q psy14660 60 ----VLATLTSDVGRILSKLHQVQPNGNINFM----TGIRIAH---LALKHRQGKNHKMRIIAFVGSPVDL--------- 119 (375)
Q Consensus 60 ----vl~pLT~D~~~Il~~L~~l~~~G~~~l~----~gI~vA~---laLKhr~~k~~~~RIIvfvgSp~~~--------- 119 (375)
.+.+||.|...+...+....+.|+.+.- .||-.|. .-+.-| + ..|+|||+++..-.
T Consensus 208 f~fr~~l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~IgWR---~-a~rllV~~TDA~fH~agDgkLaG 283 (503)
T 3v4v_B 208 FSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWR---N-VSRLLVFTSDDTFHTAGDGKLGG 283 (503)
T ss_dssp CSEEEEEEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCC---S-SEEEEEEEESSCBCCTTGGGTTT
T ss_pred cceEEEEEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccccCCC---c-ceEEEEEECCCCcCcCCCccccc
Confidence 2689999999999999999888765543 2332222 112222 2 35888888643210
Q ss_pred -----------------------ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 120 -----------------------EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 120 -----------------------d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
|--.+-.+.++|.++||.+- |.-.......++.|.+-+. ++...++..
T Consensus 284 Iv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~I---FAVt~~~~~~Y~~L~~~ip-----~s~vg~Ls~ 354 (503)
T 3v4v_B 284 IFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPI---FAVTSAALPVYQELSKLIP-----KSAVGELSE 354 (503)
T ss_dssp CCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEE---EEECSSSHHHHHHHHTTST-----TCEEEECCT
T ss_pred eecCCCCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEE---EEEcccchhHHHHHHHhCC-----CceeeEccc
Confidence 11136789999999999532 2222233345555555544 344444444
No 46
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.51 E-value=0.0061 Score=57.62 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.9
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCc----chHHHHHHHHHh
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEV----VNTELLNTFIST 159 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~----~n~~kL~~fi~~ 159 (375)
.|+||++.++.+....+....|+.+++.||+|++||||... ...+.|+.+.++
T Consensus 10 ~k~iillTDG~~~~g~~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~ 66 (242)
T 3rag_A 10 IRQILVITDGCSNIGPDPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADA 66 (242)
T ss_dssp EEEEEEEESSCCCSSSCHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHH
T ss_pred ccEEEEEccCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHh
Confidence 35555554544322236788889999999999999997643 123668877776
No 47
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=92.60 E-value=0.011 Score=42.91 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=27.1
Q ss_pred hhhhc-ccccccccCCCCCCCCCCCCCChHHHHHHHHHcccCCCCc
Q psy14660 257 AEAKD-APGDMATAAHPVGGQPDFATMTEEEQIAFAMQMSMQDTQE 301 (375)
Q Consensus 257 ~~~~l-~a~~~s~~~~~~~~~~~~~~m~ee~~~~~a~~ms~~~~~~ 301 (375)
++..| +||++|.++. + .-+||..+.+|||+|||....
T Consensus 6 DEedlqrALalSRQE~------d--mEDeeadLrrAiqLSmQGss~ 43 (52)
T 2klz_A 6 DEEDLQRALALSRQEI------D--MEDEEADLRRAIQLSMQGSSR 43 (52)
T ss_dssp HHHHHHHHHHHHHHHH------C--CSSSHHHHHHHHHHHHTTCCS
T ss_pred chHHHHHHHHHHHHHh------c--cchhHHHHHHHHHHHhhcccc
Confidence 34445 9999998753 1 124778999999999997643
No 48
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=91.92 E-value=0.04 Score=38.62 Aligned_cols=20 Identities=45% Similarity=0.572 Sum_probs=17.6
Q ss_pred CCChHHHHHHHHHcccCCCC
Q psy14660 281 TMTEEEQIAFAMQMSMQDTQ 300 (375)
Q Consensus 281 ~m~ee~~~~~a~~ms~~~~~ 300 (375)
.||||||++.|++||-|++.
T Consensus 3 ~mtEEEq~ALA~rmSeQEA~ 22 (45)
T 3a1q_C 3 LGSEEEQFALALKMSEQEAR 22 (45)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhHHHHH
Confidence 59999999999999988643
No 49
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=91.70 E-value=0.037 Score=38.92 Aligned_cols=19 Identities=58% Similarity=0.779 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHcccCCCC
Q psy14660 282 MTEEEQIAFAMQMSMQDTQ 300 (375)
Q Consensus 282 m~ee~~~~~a~~ms~~~~~ 300 (375)
||||||++.||+||-|++.
T Consensus 1 MtEEEq~ALA~kmSeQEA~ 19 (46)
T 2rr9_C 1 MTEEEQFALALKMSEQEAR 19 (46)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhHHHHH
Confidence 8999999999999988653
No 50
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=83.21 E-value=0.89 Score=36.18 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHcccCCCCcc
Q psy14660 282 MTEEEQIAFAMQMSMQDTQEP 302 (375)
Q Consensus 282 m~ee~~~~~a~~ms~~~~~~~ 302 (375)
-.+||+|.+||+||+++....
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~ 29 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNS 29 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCC
T ss_pred cCchHHHHHHHHHhHHHHcCC
Confidence 469999999999999987554
No 51
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=82.84 E-value=5.5 Score=32.41 Aligned_cols=102 Identities=18% Similarity=0.250 Sum_probs=56.8
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC----C-chhhH
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG----P-HLSDA 182 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g----~-~Lsd~ 182 (375)
--++|+|+. .....+.+++ ++.++.|.+ |+=. .+.+..+.. .++++..|.- + .+-+.
T Consensus 33 ~~l~i~G~g--~~~~~~~~~~---~~~~~~v~~-g~~~----~~~~~~~~~--------~adv~v~ps~~e~~~~~~~Ea 94 (166)
T 3qhp_A 33 IVLLLKGKG--PDEKKIKLLA---QKLGVKAEF-GFVN----SNELLEILK--------TCTLYVHAANVESEAIACLEA 94 (166)
T ss_dssp EEEEEECCS--TTHHHHHHHH---HHHTCEEEC-CCCC----HHHHHHHHT--------TCSEEEECCCSCCCCHHHHHH
T ss_pred eEEEEEeCC--ccHHHHHHHH---HHcCCeEEE-eecC----HHHHHHHHH--------hCCEEEECCcccCccHHHHHH
Confidence 345556653 2344555554 555665555 5432 234444442 4788888772 2 36677
Q ss_pred hhhC--CcccCCCCCCC---CCCCCCccCCCCCCCHHHHHHHHhcHHHHHHH
Q psy14660 183 LISS--PIIQGEDGAGG---APGSSYEFGVDPNEDPELALALRVSMEEQRAR 229 (375)
Q Consensus 183 l~ss--pi~~~~~~~~~---~~~~~~~fgvdp~~DPELa~Alr~Sleee~~r 229 (375)
+..- ||+.....++. ...+ .+.++|.+--+|+-+|+.-++....|
T Consensus 95 ma~G~vPvi~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~i~~l~~~~~~~ 144 (166)
T 3qhp_A 95 ISVGIVPVIANSPLSATRQFALDE--RSLFEPNNAKDLSAKIDWWLENKLER 144 (166)
T ss_dssp HHTTCCEEEECCTTCGGGGGCSSG--GGEECTTCHHHHHHHHHHHHHCHHHH
T ss_pred HhcCCCcEEeeCCCCchhhhccCC--ceEEcCCCHHHHHHHHHHHHhCHHHH
Confidence 6665 88873332211 1111 22567777778999998877654433
No 52
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=79.54 E-value=0.29 Score=35.50 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHhcHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCChhhhc-ccccccccCC
Q psy14660 210 NEDPELALALRVSMEEQRARQESEARRAAEGASGADTSASSAVPKPTAEAKD-APGDMATAAH 271 (375)
Q Consensus 210 ~~DPELa~Alr~Sleee~~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~a~~~s~~~~ 271 (375)
+++++|+-||++| |||. ..++++|-| +||.+||+..
T Consensus 5 EDEedlqrALalS------RQE~--------------------dmEDeeadLrrAiqLSmQGs 41 (52)
T 2klz_A 5 EDEEDLQRALALS------RQEI--------------------DMEDEEADLRRAIQLSMQGS 41 (52)
T ss_dssp HHHHHHHHHHHHH------HHHH--------------------CCSSSHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHH------HHHh--------------------ccchhHHHHHHHHHHHhhcc
Confidence 4578999999999 6652 135667777 9999999754
No 53
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=75.48 E-value=7.8 Score=36.27 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccCC--------CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 88 TGIRIAHLALKHRQG--------KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 88 ~gI~vA~laLKhr~~--------k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.|..+|...+++.+. .+...||+||.|..+ +.++-+-+|+.|+..|+.|.|+-+|..
T Consensus 59 Ag~ava~~i~~~~~~~~~~~~~~~~~~~~vlVlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~ 123 (259)
T 3d3k_A 59 TGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHV--KGAQGISCGRHLANHDVQVILFLPNFV 123 (259)
T ss_dssp HHHHHHHHHHHHTCCC---------CCCEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCBCS
T ss_pred HHHHHHHHHHHHccccccccccccCCCCeEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 455566665554332 112358998888654 688889999999999999999888854
No 54
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=73.02 E-value=15 Score=31.14 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=35.0
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.++|+|+.+|+.+.+++-...+++.|++.|+.|.++.+...
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 46888888998776788888899999999999999998765
No 55
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=72.02 E-value=8.4 Score=37.00 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhccCC--------CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 88 TGIRIAHLALKHRQG--------KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 88 ~gI~vA~laLKhr~~--------k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.|..+|..++++.+. .+...+|+||.|.++ +.++-+-+|+.|+..|+.|.|+-+|..
T Consensus 106 AG~ava~~i~~~~~~~~~~~~~~~~~~~~vlVlcG~GN--NGGDGlv~AR~L~~~G~~V~V~~~~~~ 170 (306)
T 3d3j_A 106 TGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHV--KGAQGISCGRHLANHDVQVILFLPNFV 170 (306)
T ss_dssp HHHHHHHHHHHHHC-----------CCCEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHHHHHccccccccccccCCCCeEEEEECCCC--CHHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 455566655554331 112358888887654 688889999999999999999888853
No 56
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=71.77 E-value=8.9 Score=35.61 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhccCCCCC-----ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 88 TGIRIAHLALKHRQGKNH-----KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~-----~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.|..+|...+++.+.... ..||+||.|..+ +.++-+-+|+.|+..|+.|.|+-++..
T Consensus 35 Ag~ava~~i~~~~~~~~~~~~~~~~~v~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~ 96 (246)
T 1jzt_A 35 AGFSVAQAVCRQFPLRGKTETEKGKHVFVIAGPGN--NGGDGLVCARHLKLFGYNPVVFYPKRS 96 (246)
T ss_dssp HHHHHHHHHHHHSCCSSCCHHHHTCEEEEEECSSH--HHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred HHHHHHHHHHHHccccccccccCCCeEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 456666666665442111 158998887654 688889999999999999999877753
No 57
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=69.95 E-value=39 Score=30.87 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=30.8
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHH
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFI 157 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi 157 (375)
..+|+|+|..... +...+.+++++|++. ++.+.++|-|.. .+.|++++
T Consensus 198 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~ 248 (394)
T 3okp_A 198 TPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRY---ESTLRRLA 248 (394)
T ss_dssp CCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTT---HHHHHHHT
T ss_pred ceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchH---HHHHHHHH
Confidence 3678888875321 455677777777665 678888776643 34555554
No 58
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=69.87 E-value=28 Score=32.33 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=33.6
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC-CcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE-KVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~-~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
..+|+|+|..... ....+.++++++++. ++.+.++|-|.. .+.|+++++..+
T Consensus 211 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~---~~~l~~~~~~~~ 264 (394)
T 2jjm_A 211 EKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPE---FCTILQLVKNLH 264 (394)
T ss_dssp -CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTT---HHHHHHHHHTTT
T ss_pred CeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchH---HHHHHHHHHHcC
Confidence 4578888765421 345667777777664 688888776654 367777776643
No 59
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=66.78 E-value=14 Score=32.80 Aligned_cols=65 Identities=14% Similarity=0.260 Sum_probs=44.2
Q ss_pred cEEEEEEcCCCCCC-hHHHHHHHHHHHhCCcEEEEEEecCC-c-------chHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 107 MRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEE-V-------VNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 107 ~RIIvfvgSp~~~d-~~~l~~lakkLKk~~I~VdiIgfG~e-~-------~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
++|+|++||..... ...+.+.+.++...++.|.+|.+++- . ...+..++|.+.+...| -+|.+-|
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD----~~ii~tP 76 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSD----AVLAITP 76 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSS----EEEEECC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCC----cEEEech
Confidence 58999999987654 34466666677778999999998751 1 11355677778887655 4555555
No 60
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=65.68 E-value=12 Score=33.19 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=39.3
Q ss_pred CCccEEEEEEcCCCCC------ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 104 NHKMRIIAFVGSPVDL------EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 104 ~~~~RIIvfvgSp~~~------d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
+...+|+|+.|||... +..-+..+++.+++.+..|.+|-+.......+.+++|.++ | ++|.+-|
T Consensus 10 ~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~A----D----~iV~~~P 79 (204)
T 2amj_A 10 HGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWA----D----VVIWQMP 79 (204)
T ss_dssp --CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHC----S----EEEEEEE
T ss_pred cCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhC----C----EEEEECC
Confidence 4457999999999832 1222344566777779999999998754434444444433 3 6666655
No 61
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=65.24 E-value=11 Score=35.63 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhccCC---CCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 88 TGIRIAHLALKHRQG---KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 88 ~gI~vA~laLKhr~~---k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
.|..+|...+++.+. .+...||+||.|..+ +.++-+.+|+.|+..|+.|.|+-++.
T Consensus 58 AG~ava~~i~~~~~~~~~~~~~~~VlVlcG~GN--NGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 58 AGLSCATAIAKAYPPTSMSKSPPTVLVICGPGN--NGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp HHHHHHHHHHHHSCGGGSSSSSCEEEEEECSSH--HHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHHHcccccccCCCCeEEEEECCCC--CHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 456666666655432 112258998888654 68889999999999999999987775
No 62
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=62.57 E-value=9.1 Score=32.95 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=19.6
Q ss_pred CCCCCCccCCCCCCCHHHHHHHHh
Q psy14660 198 APGSSYEFGVDPNEDPELALALRV 221 (375)
Q Consensus 198 ~~~~~~~fgvdp~~DPELa~Alr~ 221 (375)
+-..+++-.+||++==-|+|-|.-
T Consensus 29 ~fefgvDp~~DPeLa~ALr~Smee 52 (132)
T 1yx4_A 29 DFEFGVDPSADPELALALRVSMEE 52 (132)
T ss_dssp SCCSCSCGGGCHHHHHHHHHHHHH
T ss_pred ccccCCCCCcCHHHHHHHHHhHHH
Confidence 445678888999999999999743
No 63
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=62.01 E-value=34 Score=27.44 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=58.7
Q ss_pred eEEecCCCCHHHHHHhhccc---CCCCCcc---HHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHH
Q psy14660 59 EVLATLTSDVGRILSKLHQV---QPNGNIN---FMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLK 132 (375)
Q Consensus 59 ~vl~pLT~D~~~Il~~L~~l---~~~G~~~---l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLK 132 (375)
.|+.-.++|...|.+.-... .|+.-+. -..-|+-....+|. ..+-+|+|+.+. ...+....-...|
T Consensus 3 kvllvistdtniissvqerakhnypgryirtatssqdirdiiksmkd-----ngkplvvfvnga---sqndvnefqneak 74 (112)
T 2lnd_A 3 KVLLVISTDTNIISSVQERAKHNYPGRYIRTATSSQDIRDIIKSMKD-----NGKPLVVFVNGA---SQNDVNEFQNEAK 74 (112)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSCTTTEEEECSHHHHHHHHHHHTT-----CCSCEEEEECSC---CHHHHHHHHHHHH
T ss_pred cEEEEEecCchHHHHHHHHhhcCCCCceeeeccchhhHHHHHHHHHh-----cCCeEEEEecCc---ccccHHHHHHHHH
Confidence 45555677776664433222 2332221 22334433333443 236789999543 4666667777779
Q ss_pred hCCcEEEEEEecCCcchHHHHHHHHHhhCC
Q psy14660 133 KEKVNVDIVSFGEEVVNTELLNTFISTLNG 162 (375)
Q Consensus 133 k~~I~VdiIgfG~e~~n~~kL~~fi~~vn~ 162 (375)
|+||+-||+---...+-+.+...|..+..+
T Consensus 75 kegvsydvlkstdpeeltqrvreflktags 104 (112)
T 2lnd_A 75 KEGVSYDVLKSTDPEELTQRVREFLKTAGS 104 (112)
T ss_dssp HHTCEEEEEECCCHHHHHHHHHHHHHHTTS
T ss_pred hcCcchhhhccCCHHHHHHHHHHHHHhccc
Confidence 999999998776666667888999887543
No 64
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=61.79 E-value=9.7 Score=36.15 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=45.2
Q ss_pred CccEEEEEEcCCCCC--ChHHHHHHHHHHHhCCcEEEEEEecCCc-------chHHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 105 HKMRIIAFVGSPVDL--EERELTKLAKRLKKEKVNVDIVSFGEEV-------VNTELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~--d~~~l~~lakkLKk~~I~VdiIgfG~e~-------~n~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
..++|+++.||+... +..-+..+++.+++.|+.|.+|-++... ...+.+..+++.+-..| .+|.+-|
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~AD----giV~aSP 132 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSE----GQVWCSP 132 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCS----EEEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCC----eEEEEcC
Confidence 457999999999753 2444555788888889999999998743 12234555666665444 5666655
No 65
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=60.94 E-value=7.7 Score=30.78 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHhcHHHHHHHH
Q psy14660 208 DPNEDPELALALRVSMEEQRARQ 230 (375)
Q Consensus 208 dp~~DPELa~Alr~Sleee~~rq 230 (375)
|-++||+|.-||-.||.|-..++
T Consensus 51 ~edeD~DLKAAIaASLrd~E~qK 73 (81)
T 1q0v_A 51 EEEEDPDLKAAIQESLREAEEAK 73 (81)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHH
Confidence 56889999999999997655443
No 66
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=60.04 E-value=9.2 Score=31.31 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=32.0
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+|..+.+..-...+++.|.+.++.|+++.+.+.
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA 41 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC
Confidence 4788888887665677777889999999999999888653
No 67
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=59.55 E-value=9.3 Score=32.36 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=32.8
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+|+.+.++.-...+++.|++.|+.|.++.+...
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 40 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAV 40 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3678888998776778788899999999999999988754
No 68
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=58.12 E-value=8.6 Score=31.36 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
++|+|+.+|+.+.+..-...+++.+...++.|.++.+..
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~ 39 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAAS 39 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhh
Confidence 378888899876566667778888998899999888765
No 69
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=57.53 E-value=6.6 Score=24.72 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=12.5
Q ss_pred HHHHHHHHhcHHHHHHH
Q psy14660 213 PELALALRVSMEEQRAR 229 (375)
Q Consensus 213 PELa~Alr~Sleee~~r 229 (375)
-||++||-+|+-|..+|
T Consensus 5 EEl~LAlAlS~sEae~~ 21 (26)
T 2d3g_P 5 EELQLALALSQSEAEEK 21 (26)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 47888888887776655
No 70
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=57.48 E-value=45 Score=33.80 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=42.9
Q ss_pred HhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCC-----c-hhhHhhhCCcccCCCCCCC----CCCC
Q psy14660 132 KKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGP-----H-LSDALISSPIIQGEDGAGG----APGS 201 (375)
Q Consensus 132 Kk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~-----~-Lsd~l~sspi~~~~~~~~~----~~~~ 201 (375)
++.+.+|.+++.+.. +.+..+.. ++.++.+|+-. . |.=.-.-.|++.-+-||-. -|-.
T Consensus 378 ~~~~~~v~~~~~~~~----~~~~~~~~--------~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~ 445 (536)
T 3vue_A 378 EKYPGKVRAVVKFNA----PLAHLIMA--------GADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKT 445 (536)
T ss_dssp HHSTTTEEEECSCCH----HHHHHHHH--------HCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTT
T ss_pred hhcCCceEEEEeccH----HHHHHHHH--------hhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCC
Confidence 444555666655443 33333433 36788888721 2 4444556677764433210 1112
Q ss_pred CC--------ccCCCCCCCHHHHHHHHhcHH
Q psy14660 202 SY--------EFGVDPNEDPELALALRVSME 224 (375)
Q Consensus 202 ~~--------~fgvdp~~DPELa~Alr~Sle 224 (375)
+| .|=|+|.+-.+|+-||+-.++
T Consensus 446 G~~~~~~~~~g~l~~~~d~~~la~ai~ral~ 476 (536)
T 3vue_A 446 GFHMGRLSVDCKVVEPSDVKKVAATLKRAIK 476 (536)
T ss_dssp EEECCCCCSCTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCceeEECCCCHHHHHHHHHHHHH
Confidence 22 223566666789999986665
No 71
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=56.17 E-value=30 Score=31.92 Aligned_cols=48 Identities=23% Similarity=0.244 Sum_probs=30.8
Q ss_pred EEEEEEcCC-CC-CChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 108 RIIAFVGSP-VD-LEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 108 RIIvfvgSp-~~-~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
.+|+|+|.. .. -+...+.++++++++. ++.+.+||-|.. +.|++++..
T Consensus 209 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~----~~l~~~~~~ 260 (406)
T 2gek_A 209 RTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE----DELREQAGD 260 (406)
T ss_dssp CEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH----HHHHHHTGG
T ss_pred eEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH----HHHHHHHHh
Confidence 578888875 32 2455677778888765 677777776644 455555443
No 72
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=56.17 E-value=11 Score=32.12 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=32.4
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+|+.+.+..-+..+++.+++.++.|.++.+.+.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 4899999998554566667788899999999999998774
No 73
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=55.33 E-value=18 Score=31.27 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCC--ChHHHHHHHHH-HHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDL--EERELTKLAKR-LKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~--d~~~l~~lakk-LKk~~I~VdiIgfG~e 146 (375)
++|++|.||+... +..-+..+++. ++..|+.|.+|.+...
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 4789999998532 34445556777 7888999999988653
No 74
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=54.10 E-value=14 Score=32.09 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+|+.+.+..-+..+++.+++.++.|.+|.+.+.
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 6899999999544566667788899999999999999875
No 75
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=52.08 E-value=80 Score=29.52 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=32.0
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhC----CcEEEEEEe----cCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKE----KVNVDIVSF----GEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~----~I~VdiIgf----G~e~~n~~kL~~fi~~vn 161 (375)
..+|+|+|.... -+...+.++++++++. ++.+.+||- |.. .+.|+++++..+
T Consensus 243 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~---~~~l~~~~~~~~ 303 (438)
T 3c48_A 243 TKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNAT---PDTYRHMAEELG 303 (438)
T ss_dssp SEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC---------CHHHHHHHHTT
T ss_pred CcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcH---HHHHHHHHHHcC
Confidence 467888876432 1455677777787765 677777775 322 356676776654
No 76
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=52.00 E-value=14 Score=25.75 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHhcHHHHH
Q psy14660 210 NEDPELALALRVSMEEQR 227 (375)
Q Consensus 210 ~~DPELa~Alr~Sleee~ 227 (375)
...-.||||||||-+|.+
T Consensus 5 tEEEq~ALA~rmSeQEA~ 22 (45)
T 3a1q_C 5 SEEEQFALALKMSEQEAR 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHH
Confidence 334568999999855443
No 77
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=51.05 E-value=94 Score=28.92 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=38.2
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhC--CcEEEEEEecCCc--chHHHHHHHHHhhCC
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKE--KVNVDIVSFGEEV--VNTELLNTFISTLNG 162 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~--~I~VdiIgfG~e~--~n~~kL~~fi~~vn~ 162 (375)
..+|+|+|..... +-..+.++++.+++. ++.+.+||-|... ...+.|+++++..+-
T Consensus 231 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~ 291 (416)
T 2x6q_A 231 KPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGE 291 (416)
T ss_dssp SCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCC
Confidence 4678888764432 456677778888765 6888888888652 224667777777654
No 78
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=50.53 E-value=46 Score=30.19 Aligned_cols=76 Identities=11% Similarity=0.129 Sum_probs=43.3
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhC---CcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhh
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKE---KVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSD 181 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~---~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd 181 (375)
...+|+|+|..... ....+.++++++++. ++.+.++|-|.. +.+++++...+-. .++..+.+-..+.+
T Consensus 195 ~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~----~~~~~~~~~~~~~----~~v~~~g~~~~~~~ 266 (374)
T 2iw1_A 195 QQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP----RKFEALAEKLGVR----SNVHFFSGRNDVSE 266 (374)
T ss_dssp TCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC----HHHHHHHHHHTCG----GGEEEESCCSCHHH
T ss_pred CCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH----HHHHHHHHHcCCC----CcEEECCCcccHHH
Confidence 35788888865432 344566666666554 788888887753 4677777665421 23333333333555
Q ss_pred HhhhCCcc
Q psy14660 182 ALISSPII 189 (375)
Q Consensus 182 ~l~sspi~ 189 (375)
.+..+.|+
T Consensus 267 ~~~~ad~~ 274 (374)
T 2iw1_A 267 LMAAADLL 274 (374)
T ss_dssp HHHHCSEE
T ss_pred HHHhcCEE
Confidence 55544444
No 79
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=50.43 E-value=18 Score=30.80 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=32.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIgfG~e 146 (375)
++|+|+.+|+.+.+..-+..+++.+++ .|+.|.++.+...
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~ 42 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPET 42 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCC
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcccc
Confidence 478899999755456666778888888 8999999999876
No 80
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=49.96 E-value=36 Score=34.78 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.|..+|....++.+. ...+||+||.|..+ +.++-+-+|+.|+..|+.|.|+-++..
T Consensus 35 Ag~a~a~~i~~~~~~-~~~~~v~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~~~~ 90 (502)
T 3rss_A 35 AGISVVLAMEEELGN-LSDYRFLVLCGGGN--NGGDGFVVARNLLGVVKDVLVVFLGKK 90 (502)
T ss_dssp HHHHHHHHHHHHHSC-CTTCEEEEEECSSH--HHHHHHHHHHHHTTTSSEEEEEECCSS
T ss_pred HHHHHHHHHHHhcCc-cCCCEEEEEECCCC--CHHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 456666665555442 23468999987754 688999999999999999999999875
No 81
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=49.71 E-value=30 Score=30.51 Aligned_cols=69 Identities=14% Similarity=0.244 Sum_probs=41.5
Q ss_pred CCCccEEEEEEcCCCCCC-hHH-HHHHHH----HHHhC--CcEEEEEEecCCcc----------hHHHHHHHHHhhCCCC
Q psy14660 103 KNHKMRIIAFVGSPVDLE-ERE-LTKLAK----RLKKE--KVNVDIVSFGEEVV----------NTELLNTFISTLNGKD 164 (375)
Q Consensus 103 k~~~~RIIvfvgSp~~~d-~~~-l~~lak----kLKk~--~I~VdiIgfG~e~~----------n~~kL~~fi~~vn~~~ 164 (375)
+.+-.||++|.||+.... ... +..+++ .|++. ++.|.+|-+++..- ..+-+..+++.+...|
T Consensus 8 ~~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD 87 (191)
T 3k1y_A 8 HSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASD 87 (191)
T ss_dssp -CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCS
T ss_pred hhhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCC
Confidence 445578999999998643 222 334455 56666 89999999986431 1144455555555433
Q ss_pred CCCeeEEEecC
Q psy14660 165 GSGSHMVTVAV 175 (375)
Q Consensus 165 ~~~Sh~v~vp~ 175 (375)
.+|.+-|
T Consensus 88 ----~ivi~sP 94 (191)
T 3k1y_A 88 ----GLVVATP 94 (191)
T ss_dssp ----EEEEEEE
T ss_pred ----EEEEEcC
Confidence 5555544
No 82
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=48.40 E-value=21 Score=30.57 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIgfG~e 146 (375)
++|+|+.+|+.+.+..-+..+++.+.+ .++.|.++.+...
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 588999999755456666778888888 8999888887653
No 83
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=48.25 E-value=75 Score=27.97 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=32.7
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+|.|+.||. .|-..+.+.++.|++.||..++--.|.+ ...+++.+|++...
T Consensus 4 ~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~saH-R~p~~~~~~~~~a~ 54 (159)
T 3rg8_A 4 LVIILMGSS--SDMGHAEKIASELKTFGIEYAIRIGSAH-KTAEHVVSMLKEYE 54 (159)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECCTT-TCHHHHHHHHHHHH
T ss_pred eEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEccc-CCHHHHHHHHHHhh
Confidence 566777763 3666677777778888887664444433 45677777766544
No 84
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=48.03 E-value=25 Score=32.35 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=43.3
Q ss_pred CccEEEEEEcCCCCC--ChHHHHHHHHHHHhCCcEEEEEEecCCc-ch-----HHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 105 HKMRIIAFVGSPVDL--EERELTKLAKRLKKEKVNVDIVSFGEEV-VN-----TELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~--d~~~l~~lakkLKk~~I~VdiIgfG~e~-~n-----~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
..++|+++.||+... +..-+..+++.+++.|+.|.+|.+.+.. .+ .+.+..+++.+...| .+|.+-|
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD----~iI~~sP 107 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE----GQVWVSP 107 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS----EEEEEEE
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC----EEEEEeC
Confidence 457999999999753 2344455778888889999999987632 11 123455555555444 5565555
No 85
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=47.80 E-value=39 Score=30.15 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=45.0
Q ss_pred CCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 104 NHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 104 ~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
+-+.++.|+.||. .|-.-+.+.++.|++.||..++--.|.. ...+++.+|++..... +...+++-.|
T Consensus 9 ~~~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaH-R~p~~l~~~~~~a~~~---g~~ViIa~AG 75 (170)
T 1xmp_A 9 HMKSLVGVIMGST--SDWETMKYACDILDELNIPYEKKVVSAH-RTPDYMFEYAETARER---GLKVIIAGAG 75 (170)
T ss_dssp --CCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TSHHHHHHHHHHTTTT---TCCEEEEEEE
T ss_pred cCCCcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEecc-CCHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 3446788888884 3777788999999999999775444443 5678888898765432 3444444444
No 86
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=47.09 E-value=23 Score=28.53 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=43.8
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHh-CCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCCCchhhHhh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKK-EKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVGPHLSDALI 184 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk-~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~~Lsd~l~ 184 (375)
.-+|+|+|..... +...+.+++++|++ .++.+.++|-|.. .+.|++++...+. +-+|-.+ +...+.+.+-
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~---~~~~~~~~~~~~~----~v~~g~~-~~~~~~~~~~ 73 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPD---EKKIKLLAQKLGV----KAEFGFV-NSNELLEILK 73 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTT---HHHHHHHHHHHTC----EEECCCC-CHHHHHHHHT
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCcc---HHHHHHHHHHcCC----eEEEeec-CHHHHHHHHH
Confidence 3568888875432 34556666666653 3688888876654 4677777776542 1233111 1123667777
Q ss_pred hCCccc
Q psy14660 185 SSPIIQ 190 (375)
Q Consensus 185 sspi~~ 190 (375)
.+.|+.
T Consensus 74 ~adv~v 79 (166)
T 3qhp_A 74 TCTLYV 79 (166)
T ss_dssp TCSEEE
T ss_pred hCCEEE
Confidence 666654
No 87
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=47.03 E-value=44 Score=29.58 Aligned_cols=64 Identities=13% Similarity=0.248 Sum_probs=41.9
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
.++.|+.||. .|-..+.+.++.|++.||..++--.| .-...+++.+|++..... +...+++-.|
T Consensus 4 ~~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~S-aHR~p~~~~~~~~~a~~~---g~~ViIa~AG 67 (163)
T 3ors_A 4 MKVAVIMGSS--SDWKIMQESCNMLDYFEIPYEKQVVS-AHRTPKMMVQFASEARER---GINIIIAGAG 67 (163)
T ss_dssp CCEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECC-TTTSHHHHHHHHHHTTTT---TCCEEEEEEE
T ss_pred CeEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEC-CcCCHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 4677787773 36777888888888888887754444 335678888888765532 3444444443
No 88
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=47.01 E-value=14 Score=27.82 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=22.2
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHhhhhc
Q psy14660 336 LQSVLENLPGVDPQSAEVRHALSSSAE 362 (375)
Q Consensus 336 l~svl~~lpgvdp~~~~v~~al~~l~~ 362 (375)
+...|..+|||||.||.=+..|.-|++
T Consensus 31 V~rfLs~~eg~d~~d~~r~rLl~HL~~ 57 (64)
T 2db7_A 31 VARYLSIIEGLDASDPLRVRLVSHLNN 57 (64)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 557889999999999987888877753
No 89
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=46.81 E-value=21 Score=25.06 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=11.0
Q ss_pred HHHHHHHHhcHHHHH
Q psy14660 213 PELALALRVSMEEQR 227 (375)
Q Consensus 213 PELa~Alr~Sleee~ 227 (375)
-.||||||||-.|.+
T Consensus 5 Eq~ALA~kmSeQEA~ 19 (46)
T 2rr9_C 5 EQFALALKMSEQEAR 19 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 468999999954443
No 90
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=45.98 E-value=52 Score=29.45 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=44.9
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
..-+|.|+.||. .|-..+.+.++.|++.||..++--.|.+ ...++|.+|++....+ +...+++-.|
T Consensus 11 ~~P~V~IimGS~--SD~~v~~~a~~~l~~~gi~~ev~V~saH-R~p~~l~~~~~~a~~~---g~~ViIa~AG 76 (173)
T 4grd_A 11 SAPLVGVLMGSS--SDWDVMKHAVAILQEFGVPYEAKVVSAH-RMPDEMFDYAEKARER---GLRAIIAGAG 76 (173)
T ss_dssp SSCSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TSHHHHHHHHHHHTTT---TCSEEEEEEE
T ss_pred CCCeEEEEeCcH--hHHHHHHHHHHHHHHcCCCEEEEEEccc-cCHHHHHHHHHHHHhc---CCeEEEEecc
Confidence 335778888873 3777788888999999998775555544 4578888888776532 3455554444
No 91
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=45.42 E-value=71 Score=28.35 Aligned_cols=64 Identities=9% Similarity=0.195 Sum_probs=43.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
.++.|+.||. .|-..+.+.++.|++.||..++--.|.+ ...++|..|++..... +...+++-.|
T Consensus 6 p~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH-Rtp~~l~~~~~~~~~~---g~~ViIa~AG 69 (166)
T 3oow_A 6 VQVGVIMGSK--SDWSTMKECCDILDNLGIGYECEVVSAH-RTPDKMFDYAETAKER---GLKVIIAGAG 69 (166)
T ss_dssp EEEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECCTT-TCHHHHHHHHHHTTTT---TCCEEEEEEC
T ss_pred CeEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEcCc-CCHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 3678888874 3777788888899999998775555543 5678888888776532 3344444444
No 92
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=45.09 E-value=43 Score=28.34 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=16.3
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhC
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKE 134 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~ 134 (375)
+|+|+.+|..+.+++-...+++.|...
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~~~ 28 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLGKD 28 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCTT
T ss_pred EEEEEEECCCchHHHHHHHHHHHhccC
Confidence 566666776554555555666666544
No 93
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=44.91 E-value=47 Score=29.76 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=43.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
.+|.|+.||. .|-....+.++.|++.||..++--.|.+ ...+++.+|++..... +...+++-.|
T Consensus 13 ~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~ev~V~SaH-R~p~~~~~~~~~a~~~---g~~ViIa~AG 76 (174)
T 3kuu_A 13 VKIAIVMGSK--SDWATMQFAADVLTTLNVPFHVEVVSAH-RTPDRLFSFAEQAEAN---GLHVIIAGNG 76 (174)
T ss_dssp CCEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TCHHHHHHHHHHTTTT---TCSEEEEEEE
T ss_pred CcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEccc-CCHHHHHHHHHHHHhC---CCcEEEEECC
Confidence 4688888874 3777788888899999999875555543 5678888888765432 3444444443
No 94
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=43.82 E-value=54 Score=27.67 Aligned_cols=40 Identities=3% Similarity=0.141 Sum_probs=29.3
Q ss_pred cEEEEEEcCCCC--C-ChHHHHHHHHHHHhCC--cEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVD--L-EERELTKLAKRLKKEK--VNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~--~-d~~~l~~lakkLKk~~--I~VdiIgfG~e 146 (375)
++|+++.|||.. . +..-+..+++.+++.+ +.|.+|.+...
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 479999999973 2 3444455677888765 89999998764
No 95
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=43.74 E-value=55 Score=29.16 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
+|.|+.||. .|-....+.++.|++.||..++--.|.+ ...+++.+|++..
T Consensus 8 ~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~SaH-R~p~~~~~~~~~a 57 (169)
T 3trh_A 8 FVAILMGSD--SDLSTMETAFTELKSLGIPFEAHILSAH-RTPKETVEFVENA 57 (169)
T ss_dssp EEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TSHHHHHHHHHHH
T ss_pred cEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEccc-CCHHHHHHHHHHH
Confidence 556666653 2555566666666666666654333332 3455666665543
No 96
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=49.09 E-value=5.1 Score=32.16 Aligned_cols=48 Identities=27% Similarity=0.448 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
.+|||+++| |...+..+|+++|.+|..|+|+---.. .++|+.-|..+.
T Consensus 3 skiiviiss----ddttleelarkikdeglevyillkdkd---ekrleekiqklk 50 (110)
T 2lta_A 3 SKIIVIISS----DDTTLEELARKIKDEGLEVYILLKDKD---EKRLEEKIQKLK 50 (110)
Confidence 467777765 456788999999999999998754332 345554444444
No 97
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=42.79 E-value=28 Score=28.50 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+|+|+.+|..+.++.-...+++.|...++.|.++.
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 57777888877788888899999999888887764
No 98
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=42.15 E-value=45 Score=28.38 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=31.9
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhC-CcEEEEEEec
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-KVNVDIVSFG 144 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~-~I~VdiIgfG 144 (375)
+.++..-+|.+-.++ . .--.+|++.| ..+...++++|+.. |++|.++|+-
T Consensus 92 ~~~Dv~laiD~~~~a--~-----~~d~~vLvSg------D~DF~plv~~lr~~~G~~V~v~g~~ 142 (165)
T 2qip_A 92 GDWDVGITLDAIEIA--P-----DVDRVILVSG------DGDFSLLVERIQQRYNKKVTVYGVP 142 (165)
T ss_dssp CCCHHHHHHHHHHHG--G-----GCSEEEEECC------CGGGHHHHHHHHHHHCCEEEEEECG
T ss_pred CCccHHHHHHHHHhh--c-----cCCEEEEEEC------ChhHHHHHHHHHHHcCcEEEEEeCC
Confidence 456665555544432 1 1235555543 23688899999995 9999888874
No 99
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=40.76 E-value=16 Score=29.49 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=30.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
|+|+.+|..+.++.-...+++.|++.|+.|+++.+.+.
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 38 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDV 38 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGC
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhC
Confidence 45666787665677778889999999999999988764
No 100
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=40.01 E-value=18 Score=31.91 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=32.9
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
..++|+|+.+|..+.+++-...+++.|...|+.|.++.+..
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~ 60 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDS 60 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGG
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHH
Confidence 34678888899876667778889999999999998888765
No 101
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=39.85 E-value=45 Score=28.26 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=25.1
Q ss_pred cEEEEEEcCCCC--CChHHHHHHHHHHHhC------CcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVD--LEERELTKLAKRLKKE------KVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~--~d~~~l~~lakkLKk~------~I~VdiIgfG~ 145 (375)
++|+++.||+.. .+..-+..+++.+++. ++.|.+|.+..
T Consensus 1 Mkilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 368888888863 2344444556667665 67888877654
No 102
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=39.80 E-value=37 Score=28.15 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=14.3
Q ss_pred CCCCHHHHHHHHhcHHHHHH
Q psy14660 209 PNEDPELALALRVSMEEQRA 228 (375)
Q Consensus 209 p~~DPELa~Alr~Sleee~~ 228 (375)
+..--+|+-+|+.-++....
T Consensus 146 ~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 146 NADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp CSCHHHHHHHHHHHHHCTTT
T ss_pred CCCHHHHHHHHHHHHhCHHH
Confidence 56667899999888765443
No 103
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2
Probab=39.29 E-value=2.4e+02 Score=26.17 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=16.1
Q ss_pred HHHHHHHhCCcEEEEEEecC
Q psy14660 126 KLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~ 145 (375)
.++..+.+.||+|.+|.-|.
T Consensus 247 ~la~el~~~gIrvn~v~PG~ 266 (328)
T 2qhx_A 247 SAALELAPLQIRVNGVGPGL 266 (328)
T ss_dssp HHHHHHGGGTEEEEEEEESS
T ss_pred HHHHHHhhcCcEEEEEecCc
Confidence 45666777899999999885
No 104
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=39.16 E-value=83 Score=29.02 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=36.8
Q ss_pred EEEEEEcCCC-CC-ChHHHHHHHHHHHh----CCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 108 RIIAFVGSPV-DL-EERELTKLAKRLKK----EKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 108 RIIvfvgSp~-~~-d~~~l~~lakkLKk----~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
.+|+|+|... .. +-..+.++++++++ .++.+.+||-|... ..+.|++++...
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~-~~~~l~~~~~~~ 309 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPE-LEGWARSLEEKH 309 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHH-HHHHHHHHHHHC
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChh-HHHHHHHHHhhc
Confidence 7888998765 32 56778888888888 57888888766532 236677777664
No 105
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=39.07 E-value=1.9e+02 Score=27.31 Aligned_cols=40 Identities=8% Similarity=0.085 Sum_probs=31.8
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+|+.+.+.+-+..+++.+++.++.|.++.+...
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~ 296 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS 296 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC
Confidence 6888899998665677677788899988988888877643
No 106
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=38.65 E-value=67 Score=28.93 Aligned_cols=64 Identities=11% Similarity=0.180 Sum_probs=44.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
.+|.|+.||. .|-..+.+.++.|++.||..++--.|.+ ...+++.+|++..... +...+++-.|
T Consensus 22 ~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaH-R~p~~l~~~~~~a~~~---g~~ViIa~AG 85 (182)
T 1u11_A 22 PVVGIIMGSQ--SDWETMRHADALLTELEIPHETLIVSAH-RTPDRLADYARTAAER---GLNVIIAGAG 85 (182)
T ss_dssp CSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TCHHHHHHHHHHTTTT---TCCEEEEEEE
T ss_pred CEEEEEECcH--HHHHHHHHHHHHHHHcCCCeEEEEEccc-CCHHHHHHHHHHHHhC---CCcEEEEecC
Confidence 4688888874 3777788899999999999775544444 5678888888765432 3444444444
No 107
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=38.33 E-value=11 Score=32.60 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=34.1
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEE-----------------EEEEecCCcch---HHHHHHHHHhh
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNV-----------------DIVSFGEEVVN---TELLNTFISTL 160 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~V-----------------diIgfG~e~~n---~~kL~~fi~~v 160 (375)
.++|+|+.+|+.+.+..-+..+++.++..++.| |.|-||...++ ...++.|++.+
T Consensus 6 ~~kiliiy~S~~GnT~~lA~~ia~~l~~~~~~v~~~~~~~~~~~~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~ 80 (193)
T 3d7n_A 6 SSNTVVVYHSGYGHTHRMAEAVAEGAEATLHAIDAEGNLSEDGWAALDAADAIIFGTPTYMGGPSWQFKKFADAS 80 (193)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCTTSCCCHHHHHHHHHCSEEEEEEEEETTEECHHHHHHHHHT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHhhhcceEeeecCCCCHhHHHHHHHCCEEEEEeCccCCCccHHHHHHHHHh
Confidence 357888888875545555666677776544332 34666665543 45677777765
No 108
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=37.60 E-value=30 Score=29.48 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=30.7
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+| .+.+..-+..+++.+++.++.|.++.+...
T Consensus 5 mkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 589999999 443456566778888889999999998764
No 109
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=36.94 E-value=43 Score=30.58 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 87 MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 87 ~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
..++..+...++... ..+++|+||.||-.+..+.-...+++.+ ..++.+.++.+.+-
T Consensus 23 ~~av~~~~~l~~~~~--~~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~ 79 (219)
T 3hr4_A 23 VKAVLFACMLMRKTM--ASRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKY 79 (219)
T ss_dssp HHHHHHHHHHHHHHH--HTSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGC
T ss_pred HHHHHHHHHHHHHHH--hcCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccC
Confidence 455555543332221 2447899999997665666677778777 57899999988753
No 110
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=36.25 E-value=1.8e+02 Score=27.74 Aligned_cols=53 Identities=6% Similarity=-0.052 Sum_probs=37.6
Q ss_pred cEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 107 MRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 107 ~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
..+|+|+|..... .-..+.++++++++.++.+.|||-|.. ...+.|++++...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~-~~~~~l~~~~~~~ 344 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDV-ALEGALLAAASRH 344 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCH-HHHHHHHHHHHHT
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCch-HHHHHHHHHHHhC
Confidence 3588899875432 455677778888878999999998853 2246777777765
No 111
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=36.24 E-value=32 Score=27.14 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
|+|+.+|..+.+..-+..+++.+...++.|.++.+.+.
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~ 39 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDT 39 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccC
Confidence 45666787655566667788888888888888877653
No 112
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=34.68 E-value=96 Score=28.19 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=40.0
Q ss_pred EEecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEE
Q psy14660 60 VLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVD 139 (375)
Q Consensus 60 vl~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~Vd 139 (375)
++.|+|+....+ +....+|+++|..-+-..-.-+.| +|-+++.+. .+++......+++|...+..+-
T Consensus 12 ~~~plsG~~a~~-----------G~~~~~g~~lAv~~iN~~GGi~Gr-~ielv~~D~-~~~p~~a~~~a~~li~~~~v~~ 78 (353)
T 4gnr_A 12 FNFEESGSLAAY-----------GTAEQKGAQLAVDEINAAGGIDGK-QIEVVDKDN-KSETAEAASVTTNLVTQSKVSA 78 (353)
T ss_dssp EEECCSSTTHHH-----------HHHHHHHHHHHHHHHHHTTCBTTB-EEEEEEEEC-TTCHHHHHHHHHHHHHTSCCSE
T ss_pred EEeCCcCchhHh-----------HHHHHHHHHHHHHHHHhcCCCCCe-EEEEEEecC-CCCHHHHHHHHHHHHhhCCceE
Confidence 467888776544 234566777766443222221233 444443332 4578888888888887765444
Q ss_pred EEE
Q psy14660 140 IVS 142 (375)
Q Consensus 140 iIg 142 (375)
|||
T Consensus 79 i~g 81 (353)
T 4gnr_A 79 VVG 81 (353)
T ss_dssp EEC
T ss_pred Eec
Confidence 444
No 113
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=34.49 E-value=44 Score=30.09 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+||+|+.|||.... ..-+..+++.+++.|..|.+|-+.+.
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 68999999998643 33345568888888999999998763
No 114
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=34.26 E-value=46 Score=29.76 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=24.0
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
++.|+.||. .|-..+.+.++.|++.||..++--.|.+ ...+++.+|++.
T Consensus 9 ~V~IimgS~--SD~~v~~~a~~~L~~~gi~~ev~V~SaH-R~p~~~~~~~~~ 57 (174)
T 3lp6_A 9 RVGVIMGSD--SDWPVMADAAAALAEFDIPAEVRVVSAH-RTPEAMFSYARG 57 (174)
T ss_dssp SEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TCHHHHHHHHHH
T ss_pred eEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEECCC-CCHHHHHHHHHH
Confidence 455555552 2444555555566666665543333322 334555555443
No 115
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=32.73 E-value=1.3e+02 Score=27.97 Aligned_cols=41 Identities=7% Similarity=0.004 Sum_probs=32.0
Q ss_pred ccEEEEEEcCCCCC-ChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 106 KMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 106 ~~RIIvfvgSp~~~-d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++||++++.++... -+.-+..+++.|++.|..|.++.+...
T Consensus 40 ~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 40 GRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred ccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 47888888775432 366677899999999999999988654
No 116
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=32.63 E-value=1.2e+02 Score=27.19 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=38.8
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
+-..+.|+.||. .|-.-+.+.++.|++.||..++--.|.. ...+++.+|++..-
T Consensus 12 ~~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~dv~V~SaH-R~p~~l~~~~~~a~ 65 (183)
T 1o4v_A 12 HVPRVGIIMGSD--SDLPVMKQAAEILEEFGIDYEITIVSAH-RTPDRMFEYAKNAE 65 (183)
T ss_dssp --CEEEEEESCG--GGHHHHHHHHHHHHHTTCEEEEEECCTT-TCHHHHHHHHHHTT
T ss_pred CCCeEEEEeccH--HHHHHHHHHHHHHHHcCCCeEEEEEccc-CCHHHHHHHHHHHH
Confidence 445788888874 3777788899999999999775555544 56788888887654
No 117
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=32.10 E-value=1.8e+02 Score=26.12 Aligned_cols=62 Identities=10% Similarity=0.185 Sum_probs=39.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
+-|+.||. .|-..+.+.++.|++.||..++--.+.. ...++|.+|++....+ +...+++-.|
T Consensus 25 V~IimGS~--SD~~v~~~a~~~L~~~gI~~e~~V~SAH-Rtp~~l~~~~~~a~~~---g~~ViIa~AG 86 (181)
T 4b4k_A 25 VGVIMGST--SDWETMKYACDILDELNIPYEKKVVSAH-RTPDYMFEYAETARER---GLKVIIAGAG 86 (181)
T ss_dssp EEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TSHHHHHHHHHHTTTT---TCCEEEEEEC
T ss_pred EEEEECCH--hHHHHHHHHHHHHHHcCCCeeEEEEccc-cChHHHHHHHHHHHhc---CceEEEEecc
Confidence 66667773 3666777888888888888765544444 4567777787765432 3444444444
No 118
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=31.94 E-value=1.3e+02 Score=24.02 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=29.6
Q ss_pred cEEEEEEcCCCC----CChHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 107 MRIIAFVGSPVD----LEERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 107 ~RIIvfvgSp~~----~d~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.+.||+=.+.+. ..-..+..+.+++++.|+.+.++|.....
T Consensus 48 ~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 92 (130)
T 2kln_A 48 VEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDL 92 (130)
T ss_dssp CEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHH
T ss_pred ceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 345555555554 13567889999999999999999886543
No 119
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=31.74 E-value=1.2e+02 Score=28.86 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=37.5
Q ss_pred cEEEEEEcCCCC-CChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 107 MRIIAFVGSPVD-LEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 107 ~RIIvfvgSp~~-~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
..+|+|+|.... -.-..+.++++++++.++.+.|||-|.. ...+.|++++...
T Consensus 292 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~-~~~~~l~~~~~~~ 345 (485)
T 2qzs_A 292 VPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDP-VLQEGFLAAAAEY 345 (485)
T ss_dssp SCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECH-HHHHHHHHHHHHS
T ss_pred CeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCch-HHHHHHHHHHHhC
Confidence 467888886432 1455677888888878999999998863 2246777777664
No 120
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=31.33 E-value=1.5e+02 Score=27.17 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=0.0
Q ss_pred ceEEEEEeCCccccCCCCCCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccCCCCC
Q psy14660 4 ESTMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQPNGN 83 (375)
Q Consensus 4 EaivI~lDnSesMrngD~~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~ 83 (375)
+++.+..|++. ....+++++..+..+ .+|=+++-.-+...-.++..+...+...++
T Consensus 56 ~~~~~~~Dv~~-----------~~~v~~~v~~~~~~~------G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~------- 111 (258)
T 4gkb_A 56 RATYLPVELQD-----------DAQCRDAVAQTIATF------GRLDGLVNNAGVNDGIGLDAGRDAFVASLE------- 111 (258)
T ss_dssp TCEEEECCTTC-----------HHHHHHHHHHHHHHH------SCCCEEEECCCCCCCCCTTSCHHHHHHHHH-------
T ss_pred CEEEEEeecCC-----------HHHHHHHHHHHHHHh------CCCCEEEECCCCCCCCCccCCHHHHHHHHH-------
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC--CChHHHH-------------HHHHHHHhCCcEEEEEEec
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD--LEERELT-------------KLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~--~d~~~l~-------------~lakkLKk~~I~VdiIgfG 144 (375)
+++...+.+++.+++|......+ ||+++|... ..+.... .+|..+.+.||+|..|+=|
T Consensus 112 vNl~g~~~~~~~~~p~m~~~~G~---IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG 184 (258)
T 4gkb_A 112 RNLIHYYAMAHYCVPHLKATRGA---IVNISSKTAVTGQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPA 184 (258)
T ss_dssp HHTHHHHHHHHHHHHHHHHHTCE---EEEECCTHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEEC
T ss_pred HHhHHHHHHHHHHHHHHHhcCCe---EEEEeehhhccCCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecC
No 121
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=30.56 E-value=68 Score=32.57 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.|..+|....++.+ ..+||+||.|..+ +.++-+-+|+.|+.. +.|.|+-++..
T Consensus 31 Ag~ava~~i~~~~~---~~~~v~VlcG~GN--NGGDGlv~AR~L~~~-~~V~v~~~~~~ 83 (475)
T 3k5w_A 31 AAMALERAVLQNAS---LGAKVIILCGSGD--NGGDGYALARRLVGR-FRVLVFEMKLT 83 (475)
T ss_dssp HHHHHHHHHHTTSC---TTCEEEEEECSSH--HHHHHHHHHHHHBTT-BEEEEEESSCC
T ss_pred HHHHHHHHHHHHcC---CCCeEEEEECCCC--CHHHHHHHHHHHHcC-CceEEEEeCCC
Confidence 34556665555543 2368999988754 688899999999977 99999988764
No 122
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=29.92 E-value=32 Score=29.39 Aligned_cols=38 Identities=8% Similarity=0.217 Sum_probs=23.4
Q ss_pred cEEEEEEcCCCCC--ChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDL--EERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~--d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
++|+++.||+... +..-+..+++.++ .++.|.+|.+..
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~ 46 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG 46 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH
Confidence 5888888998632 2222233344444 578888888765
No 123
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=29.92 E-value=89 Score=27.40 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCCCC-hHHHHHHHHHHHhCCcEEE-EEEecCCc-ch--------HHHHHHHHHhhCCCCCCCeeEEEecC
Q psy14660 107 MRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVD-IVSFGEEV-VN--------TELLNTFISTLNGKDGSGSHMVTVAV 175 (375)
Q Consensus 107 ~RIIvfvgSp~~~d-~~~l~~lakkLKk~~I~Vd-iIgfG~e~-~n--------~~kL~~fi~~vn~~~~~~Sh~v~vp~ 175 (375)
+||++|.||+.... ...+.+.+.+..+.++.|. +|.++.-. .+ .+.+.++++.+...| .+|.+-|
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD----~iVi~tP 82 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATAD----AVVIVTP 82 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSS----EEEEEEC
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCC----EEEEEcC
Confidence 68999999987533 2333333333334688888 88775421 11 123455666666544 5666655
No 124
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=29.84 E-value=48 Score=30.06 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=31.9
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLN 161 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn 161 (375)
.++|+|+|... ..+.+..+.+.+++-++.+.+||-|.. .+.|++++...+
T Consensus 162 ~~~i~~vG~~~--~~Kg~~~li~a~~~~~~~l~i~G~g~~---~~~l~~~~~~~~ 211 (342)
T 2iuy_A 162 EDFLLFMGRVS--PHKGALEAAAFAHACGRRLVLAGPAWE---PEYFDEITRRYG 211 (342)
T ss_dssp CSCEEEESCCC--GGGTHHHHHHHHHHHTCCEEEESCCCC---HHHHHHHHHHHT
T ss_pred CCEEEEEeccc--cccCHHHHHHHHHhcCcEEEEEeCccc---HHHHHHHHHHhC
Confidence 45788998754 344444444444555899999988754 356666666654
No 125
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=29.77 E-value=1.5e+02 Score=26.39 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=4.1
Q ss_pred HHHHHHhCCc
Q psy14660 127 LAKRLKKEKV 136 (375)
Q Consensus 127 lakkLKk~~I 136 (375)
+++.|.+.|.
T Consensus 28 ~a~~L~~~G~ 37 (311)
T 3o26_A 28 ICKQLSSNGI 37 (311)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 3444444443
No 126
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=29.52 E-value=84 Score=28.45 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||||-+++.+ ..--...+++.|++.|+.|++|-
T Consensus 5 k~IllgvTGai--aa~k~~~ll~~L~~~g~eV~vv~ 38 (209)
T 3zqu_A 5 ERITLAMTGAS--GAQYGLRLLDCLVQEEREVHFLI 38 (209)
T ss_dssp SEEEEEECSSS--CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEECHH--HHHHHHHHHHHHHHCCCEEEEEE
Confidence 68888886654 33447788999999999999874
No 127
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=28.68 E-value=16 Score=26.90 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=17.7
Q ss_pred HHHHhcCCCCCCCCHHHHHHHhhh
Q psy14660 337 QSVLENLPGVDPQSAEVRHALSSS 360 (375)
Q Consensus 337 ~svl~~lpgvdp~~~~v~~al~~l 360 (375)
+|+|.++|||-|. +.+..|..+
T Consensus 3 ~s~L~~IpGIG~k--r~~~LL~~F 24 (63)
T 2a1j_A 3 QDFLLKMPGVNAK--NCRSLMHHV 24 (63)
T ss_dssp CHHHHTSTTCCHH--HHHHHHHHC
T ss_pred HhHHHcCCCCCHH--HHHHHHHHc
Confidence 5889999999987 777777644
No 128
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=28.53 E-value=1.4e+02 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=23.7
Q ss_pred cEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
++|+++.|||.... ..-+..+++.++ .++.|.+|.+..
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~ 42 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDR 42 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSS
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCcc
Confidence 47888888886432 222333455554 678888888764
No 129
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=28.49 E-value=1.9e+02 Score=25.05 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=66.1
Q ss_pred EEEEeCCc-cccCCCC-CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHHHHhhcccC-----
Q psy14660 7 MICVDNSD-FMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ----- 79 (375)
Q Consensus 7 vI~lDnSe-sMrngD~-~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~Il~~L~~l~----- 79 (375)
+|++|... .-..-++ .++-..+.+.+++.|++. -..+|++|.-.... ...=..-+..+|....
T Consensus 82 vV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~-----G~~~i~~i~~~~~~-----~~~R~~gf~~~l~~~~~~~~~ 151 (280)
T 3gyb_A 82 FVIAGTRITQASTHDSVANDDFRGAEIATKHLIDL-----GHTHIAHLRVGSGA-----GLRRFESFEATMRAHGLEPLS 151 (280)
T ss_dssp EEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHT-----TCCSEEEECCSSHH-----HHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHC-----CCCeEEEEeCCCch-----HHHHHHHHHHHHHHcCcCCCc
Confidence 56666554 2222222 366778888899999864 23477776543221 0000111233333221
Q ss_pred --CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcE----EEEEEecCC
Q psy14660 80 --PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVN----VDIVSFGEE 146 (375)
Q Consensus 80 --~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~----VdiIgfG~e 146 (375)
..+..+...+.+.+...|+..+. -. .||.. +......+.+.|++.|++ |.||||+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~-ai~~~-----~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 214 (280)
T 3gyb_A 152 NDYLGPAVEHAGYTETLALLKEHPE----VT-AIFSS-----NDITAIGALGAARELGLRVPEDLSIIGYDNT 214 (280)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTT----CC-EEEES-----SHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred ccccCCCCHHHHHHHHHHHHhCCCC----CC-EEEEC-----ChHHHHHHHHHHHHcCCCCCCeeEEEEECCc
Confidence 22556667777777776754321 11 33432 344466677788888876 789999864
No 130
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=28.46 E-value=75 Score=28.80 Aligned_cols=73 Identities=8% Similarity=0.033 Sum_probs=44.9
Q ss_pred ccEEEEEEcCCCCC------ChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecC---C
Q psy14660 106 KMRIIAFVGSPVDL------EERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAV---G 176 (375)
Q Consensus 106 ~~RIIvfvgSp~~~------d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~---g 176 (375)
-++|+|+.|||... +..-+..+++.+++.|..|.++-+.......+..+.|..+ | ++|.+-| +
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~a----D----~iv~~~P~y~~ 96 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWA----D----TIIYQMPAWWM 96 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHC----S----EEEEEEECBTT
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhC----C----EEEEECChHhc
Confidence 36899999999631 1222345667778889999999998754433444444332 3 6666655 2
Q ss_pred C------chhhHhhhC
Q psy14660 177 P------HLSDALISS 186 (375)
Q Consensus 177 ~------~Lsd~l~ss 186 (375)
. .+-|.++..
T Consensus 97 ~~p~~lK~~iD~v~~~ 112 (218)
T 3rpe_A 97 GEPWILKKYIDEVFTD 112 (218)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc
Confidence 1 256777644
No 131
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=28.35 E-value=1.2e+02 Score=26.84 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=33.6
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHH
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIS 158 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~ 158 (375)
+.++|+|.|-+...-.-.+..+++.|...++.|.+..+-......+++..|+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~ 57 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLL 57 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHh
Confidence 35788888765432233455678899999998866655333333456666665
No 132
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=28.26 E-value=87 Score=28.21 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+-|++++.||.+ +......+.+.++..+..|.++..|-
T Consensus 69 k~I~l~INSPGG-sv~a~~~I~~~i~~~~~pV~t~v~g~ 106 (215)
T 2f6i_A 69 NDIKIYINSPGG-SINEGLAILDIFNYIKSDIQTISFGL 106 (215)
T ss_dssp SCEEEEEEECCB-CHHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred CcEEEEEECCCC-CHHHHHHHHHHHHhcCCCEEEEEeeE
Confidence 689999999965 44445566666666666666666654
No 133
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=28.08 E-value=2.1e+02 Score=26.74 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=32.5
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.++|+|+.+|..+.+..-+..+++.+.+.++.|.++.+...
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~ 296 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHED 296 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTS
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 36788888887665677777888889888999999888754
No 134
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=27.70 E-value=28 Score=29.38 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.0
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
++|+|+.+|..+.++.-...+++.|...++.|.++.+..
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 48 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGD 48 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGG
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhh
Confidence 467777788766667777788999988888888877744
No 135
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}
Probab=27.52 E-value=3e+02 Score=24.51 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChH-----------------HHHHHHHHHHhCCcEEEEEEecC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER-----------------ELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~-----------------~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+++...+.+.+.++++... ....| ||+++|....... -...+++.+...||+|.+|.-|.
T Consensus 120 vN~~g~~~l~~~~~~~m~~-~~~g~-iv~isS~~~~~~~~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~ 196 (274)
T 3e03_A 120 VNARGSFVCAQACLPHLLQ-APNPH-ILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRT 196 (274)
T ss_dssp HTHHHHHHHHHHHHHHHTT-SSSCE-EEECCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSB
T ss_pred HhhHhHHHHHHHHHHHHHh-cCCce-EEEECChHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCc
Confidence 5666677777777766532 12345 4556665443321 12245677788899999999983
No 136
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=27.45 E-value=85 Score=27.24 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+||.||+.... .+-++......|++.|+.|++++++..
T Consensus 5 ~kV~ill~dGf--e~~E~~~p~~vl~~ag~~v~~~s~~~~ 42 (194)
T 4gdh_A 5 VKVCLFVADGT--DEIEFSAPWGIFKRAEIPIDSVYVGEN 42 (194)
T ss_dssp CCEEEEEETTC--CHHHHHHHHHHHHHTTCCEEEEEESSC
T ss_pred CEEEEEECCCc--CHHHHHHHHHHHHHCCCeEEEEEEcCC
Confidence 57888887654 577788888889999999999999865
No 137
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=26.86 E-value=24 Score=27.68 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHhhh
Q psy14660 336 LQSVLENLPGVDPQSAEVRHALSSS 360 (375)
Q Consensus 336 l~svl~~lpgvdp~~~~v~~al~~l 360 (375)
-+|+|..+|||-|. +.+..|..+
T Consensus 16 ~~s~L~~IpGIG~k--r~~~LL~~F 38 (84)
T 1z00_B 16 PQDFLLKMPGVNAK--NCRSLMHHV 38 (84)
T ss_dssp HHHHHHTCSSCCHH--HHHHHHHHS
T ss_pred HHHHHHhCCCCCHH--HHHHHHHHc
Confidence 57899999999887 777777544
No 138
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis}
Probab=26.80 E-value=4e+02 Score=24.93 Aligned_cols=18 Identities=22% Similarity=0.590 Sum_probs=12.9
Q ss_pred ceEEEEEeCCccccCCCCCC
Q psy14660 4 ESTMICVDNSDFMRNGDFLP 23 (375)
Q Consensus 4 EaivI~lDnSesMrngD~~P 23 (375)
+.||++||+.. |..||.|
T Consensus 75 ~~IvV~i~~~~--R~~dytp 92 (331)
T 3gff_A 75 KVIIVGIHNTN--RMRDYTP 92 (331)
T ss_dssp CCEEEEECCSS--HHHHSCS
T ss_pred CEEEEEECCCC--cccccCC
Confidence 57889999853 5557765
No 139
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=26.33 E-value=62 Score=28.09 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCC---ChHHHHHHHHHHHhC--CcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDL---EERELTKLAKRLKKE--KVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~---d~~~l~~lakkLKk~--~I~VdiIgfG~e 146 (375)
++|+++.|||... +..-+..+++.+++. |..|.++-+...
T Consensus 2 mkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSS
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 4799999999863 233445678888887 899999988764
No 140
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=25.90 E-value=40 Score=31.29 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe
Q psy14660 88 TGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 143 (375)
Q Consensus 88 ~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf 143 (375)
+|..++...+.. +.+||++ +..|....-.-+..+|+.|++.|..|.+++-
T Consensus 9 ~~~~~g~~~~~~-----~~MRIL~-~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 9 SGVDLGTENLYF-----QSMRALF-ITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp -----------------CCCEEEE-ECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CCccCCcccCCC-----CCCeEEE-ECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 445555543322 2389775 4555433333466899999999999998864
No 141
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=25.89 E-value=2.2e+02 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
..+..|+++|..-+..+..-.. .+|-+++.+. ..++......+++|...+|.. |||..
T Consensus 20 ~~~~~g~~~a~~~iN~~ggi~G-~~~~l~~~d~-~~~~~~~~~~~~~l~~~~v~~-iig~~ 77 (356)
T 3ipc_A 20 AQIQKGAEQAAKDINAAGGING-EQIKIVLGDD-VSDPKQGISVANKFVADGVKF-VVGHA 77 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTCBTT-BCEEEEEEEC-TTCHHHHHHHHHHHHHTTCCE-EEECS
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-eEEEEEEecC-CCCHHHHHHHHHHHHHCCCcE-EEcCC
Confidence 3456777777765543322122 2344444332 347778888888888888866 55543
No 142
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=25.88 E-value=96 Score=27.47 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=25.5
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||++-+++.+. .--...+++.|++.|+.|++|-
T Consensus 2 k~IllgvTGs~a--a~k~~~l~~~L~~~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASG--VIYGIKLLQVLEELDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTT--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEECHHH--HHHHHHHHHHHHHCCCEEEEEE
Confidence 478888866442 3346788999999999998875
No 143
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.41 E-value=15 Score=34.77 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHcccCCCCcc
Q psy14660 282 MTEEEQIAFAMQMSMQDTQEP 302 (375)
Q Consensus 282 m~ee~~~~~a~~ms~~~~~~~ 302 (375)
.+.|.+||.||+|||++...-
T Consensus 222 p~~dpela~alr~s~eee~~r 242 (268)
T 4b4t_W 222 PSMDPELAMALRLSMEEEQQR 242 (268)
T ss_dssp ---------------------
T ss_pred CCCCHHHHHHHHHhHHHHHHH
Confidence 346788999999999876443
No 144
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=25.38 E-value=68 Score=28.25 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=25.5
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||++.+++.+. -. -...+++.|++.|+.|++|-
T Consensus 6 k~IllgvTGs~a-a~-k~~~ll~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 6 ENVLICLCGSVN-SI-NISHYIIELKSKFDEVNVIA 39 (175)
T ss_dssp CEEEEEECSSGG-GG-GHHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEEEeCHHH-HH-HHHHHHHHHHHCCCEEEEEE
Confidence 688888866443 22 36788999999999999875
No 145
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=25.34 E-value=2.9e+02 Score=27.19 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=45.3
Q ss_pred CCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh--------------H--------HHHHHHHHHHhCCcEEE
Q psy14660 82 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE--------------R--------ELTKLAKRLKKEKVNVD 139 (375)
Q Consensus 82 G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~--------------~--------~l~~lakkLKk~~I~Vd 139 (375)
|..++..-+.++..|-++-- +-+|-|-.|+.=.|+ . ....++++||+.++.++
T Consensus 84 g~~d~~~~~~~a~~Ak~~GL-----kVlldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~ 158 (399)
T 1ur4_A 84 GNNDLEKAIQIGKRATANGM-----KLLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIG 158 (399)
T ss_dssp TCCCHHHHHHHHHHHHHTTC-----EEEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHHHHHHCCC-----EEEEEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 55788888888887755421 344445554321111 1 12256788999999999
Q ss_pred EEEecCCcch-------HHHHHHHH
Q psy14660 140 IVSFGEEVVN-------TELLNTFI 157 (375)
Q Consensus 140 iIgfG~e~~n-------~~kL~~fi 157 (375)
.|.+|.|..+ .+.|.+|+
T Consensus 159 ~vqvGNEi~~g~~~~~~~~~la~ll 183 (399)
T 1ur4_A 159 MVQVGNETNGGLAGETDWAKMSQLF 183 (399)
T ss_dssp EEEESSSCSSCBTTBCCHHHHHHHH
T ss_pred EEEEccccccccCCcccHHHHHHHH
Confidence 9999998765 55654444
No 146
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=25.09 E-value=1.1e+02 Score=28.69 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
-..+.+.+++|+++||.|.||.+-+-.. ..+.+.+++... .++|+|..+
T Consensus 214 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~-------~~vv~vEe~ 263 (324)
T 1umd_B 214 MPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKT-------GRVVLVSDA 263 (324)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCEEETCCHHHHHHHHHHH-------SCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeceecCCCHHHHHHHHhcC-------CeEEEEecC
Confidence 4567888999999999999999987332 345566666553 267777544
No 147
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=24.08 E-value=59 Score=28.93 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=29.3
Q ss_pred cEEEEEEcCCCC-C-ChHHHHHHHHHHHhC-CcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVD-L-EERELTKLAKRLKKE-KVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~-~-d~~~l~~lakkLKk~-~I~VdiIgfG~e 146 (375)
++|+++.|||.. . +..-+..+++.+++. |+.|.+|.+.+.
T Consensus 2 mkIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~ 44 (242)
T 1sqs_A 2 NKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNS 44 (242)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTC
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccC
Confidence 479999999974 2 344455567788877 999999987653
No 148
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=24.03 E-value=3.9e+02 Score=23.89 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh-----------H-H----HHHHHHHHHhCCcEEEEEEecC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE-----------R-E----LTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~-----------~-~----l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+++...+.+.+.++++... ....| ||+++|...... | - ...+++.+++.||+|.+|.-|.
T Consensus 123 vN~~g~~~l~~~~~~~m~~-~~~g~-iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~ 198 (285)
T 3sc4_A 123 IQVRGTYAVSQSCIPHMKG-RDNPH-ILTLSPPIRLEPKWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRT 198 (285)
T ss_dssp HHHHHHHHHHHHHGGGTTT-SSSCE-EEECCCCCCCSGGGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSS
T ss_pred HHhHHHHHHHHHHHHHHHH-cCCcE-EEEECChhhccCCCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCC
Confidence 4666677788887777542 22345 455566433211 1 1 1235666777899999999994
No 149
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=23.99 E-value=91 Score=26.99 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=26.8
Q ss_pred cEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+++.|||.... ..-+..+++.+ +.+..|.++-+...
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~ 41 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAE 41 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTT
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccC
Confidence 47999999997543 22233345555 67899999998865
No 150
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=23.90 E-value=1.2e+02 Score=29.76 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhC--CcEEEEEEecCCcchHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKE--KVNVDIVSFGEEVVNTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~--~I~VdiIgfG~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
.+| +|+..|...+-.-+..+|+.|... |+.|.+|+--.. +...+..++..+... +.+-+|+.+|.+
T Consensus 10 ~~v-v~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~--~~~~~~~~~~~~~~~-~~~i~~~~lp~~ 77 (463)
T 2acv_A 10 SEL-IFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFP--GMPFADSYIKSVLAS-QPQIQLIDLPEV 77 (463)
T ss_dssp EEE-EEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCT--TCCCCHHHHHHHHCS-CTTEEEEECCCC
T ss_pred CEE-EEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCc--chhhhhhhhhhcccC-CCCceEEECCCC
Confidence 354 444666666777788999999988 998888865332 111122233222111 236789888876
No 151
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=23.82 E-value=66 Score=27.60 Aligned_cols=38 Identities=11% Similarity=0.275 Sum_probs=28.4
Q ss_pred cEEEEEEcCCCC---CC-hHHHHHHHHHHHhCC--cEEEEEEec
Q psy14660 107 MRIIAFVGSPVD---LE-ERELTKLAKRLKKEK--VNVDIVSFG 144 (375)
Q Consensus 107 ~RIIvfvgSp~~---~d-~~~l~~lakkLKk~~--I~VdiIgfG 144 (375)
++|+++.|||.. .. ..-+..+++.+++.+ +.|.++-+.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCC
Confidence 479999999983 22 333445678888877 999999988
No 152
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=23.69 E-value=30 Score=26.41 Aligned_cols=11 Identities=45% Similarity=0.404 Sum_probs=6.2
Q ss_pred ChHHHHHHHHH
Q psy14660 283 TEEEQIAFAMQ 293 (375)
Q Consensus 283 ~ee~~~~~a~~ 293 (375)
++||.++++|+
T Consensus 8 ~~ee~~~~~m~ 18 (71)
T 2llw_A 8 TPEETYQRAMK 18 (71)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHhc
Confidence 55566655554
No 153
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.67 E-value=42 Score=22.08 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHhCCcEEEE
Q psy14660 120 EERELTKLAKRLKKEKVNVDI 140 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~Vdi 140 (375)
++.++.++-+..||.||+|..
T Consensus 13 tpeelkklkeeakkanirvtf 33 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTF 33 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCB
T ss_pred CHHHHHHHHHHHHhccEEEEe
Confidence 789999999999999999864
No 154
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=23.27 E-value=47 Score=27.55 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=27.3
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
++|+|+.+|+.+.++.-...+++.+... +.|.++.+..
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~ 38 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIAN 38 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhh
Confidence 3678888898765666677778888766 6677777654
No 155
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=23.23 E-value=3e+02 Score=24.18 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=66.1
Q ss_pred EEEEeCCccccCCCC-CCCHHHHHHHHHHHHHHhhccCCCCCcEEEEEecCceeEEecCCCCHHHH---HHhhcccC---
Q psy14660 7 MICVDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQ--- 79 (375)
Q Consensus 7 vI~lDnSesMrngD~-~PsRL~Aq~~Av~~~v~~k~~~NPe~~VGLVt~ag~a~vl~pLT~D~~~I---l~~L~~l~--- 79 (375)
+|++|....-..-++ ..+-..+.+.+++.|++. -..+||+|.-... + ....++ ..+|....
T Consensus 91 vV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~-----G~~~I~~i~~~~~-----~--~~~~R~~Gf~~al~~~g~~~ 158 (289)
T 3k9c_A 91 ALVVARASGLPGVGAVRGDDVAGITLAVDHLTEL-----GHRNIAHIDGADA-----P--GGADRRAGFLAAMDRHGLSA 158 (289)
T ss_dssp EEEESSCCSSTTSEEEEECHHHHHHHHHHHHHHT-----TCCSEEEECCTTS-----T--THHHHHHHHHHHHHHTTCGG
T ss_pred EEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHHC-----CCCcEEEEeCCCC-----c--cHHHHHHHHHHHHHHCCCCC
Confidence 556665432111222 256777888999999873 2347887653221 1 112222 33333221
Q ss_pred ----CCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcE----EEEEEecCC
Q psy14660 80 ----PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVN----VDIVSFGEE 146 (375)
Q Consensus 80 ----~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~----VdiIgfG~e 146 (375)
..+..+...+.+.+...|+..+. -. .||.. +......+.+.|++.|++ |.||||+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-ai~~~-----~d~~A~g~~~al~~~g~~vP~di~vig~D~~ 223 (289)
T 3k9c_A 159 SATVVTGGTTETEGAEGMHTLLEMPTP----PT-AVVAF-----NDRCATGVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp GEEEECCCSSHHHHHHHHHHHHTSSSC----CS-EEEES-----SHHHHHHHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CccEEECCCCHHHHHHHHHHHHcCCCC----CC-EEEEC-----ChHHHHHHHHHHHHcCCCCCCceEEEEECCH
Confidence 12556777787777776753221 11 23432 344566778888999986 789999864
No 156
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=23.11 E-value=1.6e+02 Score=26.50 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=33.0
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhC----CcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKE----KVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~----~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
+.++|+|.|-+...-.-.+..+++.|... |+.|.+.-+=......+++..++..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~ 81 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN 81 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHc
Confidence 46788888765543444566788889887 8888665543333334566666653
No 157
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=23.10 E-value=1.3e+02 Score=26.92 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
..+|.++-..+=.+....+..... ...+.|++++.||.+ +......+...++..+..|.++..|-.
T Consensus 31 ~l~g~I~~~~a~~i~~~L~~l~~~-~~~~~I~l~InSPGG-~v~~~~~I~~~i~~~~~~V~t~~~G~A 96 (203)
T 3qwd_A 31 MLGSQIDDNVANSIVSQLLFLQAQ-DSEKDIYLYINSPGG-SVTAGFAIYDTIQHIKPDVQTICIGMA 96 (203)
T ss_dssp EECSCBCHHHHHHHHHHHHHHHHH-CSSSCEEEEEEECCB-CHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred EEcCEECHHHHHHHHHHHHHHHhc-CCCCCEEEEEeCCCC-CHHHHHHHHHHHHHhcCCcEEEEeeee
Confidence 456666655544444432222211 233679999999965 455555666666666666666666643
No 158
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=23.06 E-value=1.1e+02 Score=27.23 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=37.9
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
..+|.++-..+=.+....+..... ...+.|++++.||.+ +......+...++..+..|.+++.|-.
T Consensus 34 ~l~g~I~~~~a~~i~~~L~~l~~~-~~~~~I~l~INSpGG-~v~~~~~I~~~i~~~~~~v~t~~~G~A 99 (201)
T 3p2l_A 34 FLNGEVNDHSANLVIAQLLFLESE-DPDKDIYFYINSPGG-MVTAGMGVYDTMQFIKPDVSTICIGLA 99 (201)
T ss_dssp EEESCBCHHHHHHHHHHHHHHHHH-CSSSCEEEEEEECCB-CHHHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred EEcCEECHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEEEcCEe
Confidence 445666555444433322222111 223689999999965 455555666666766667777776644
No 159
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=23.04 E-value=1.6e+02 Score=23.01 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=26.3
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
.+++|-+.++ ++..+.++.+.|++.+|.|.+|+.|
T Consensus 64 G~L~v~l~G~---~~~~~~~ai~~L~~~~v~vEvlg~~ 98 (98)
T 3ced_A 64 GFLVLHIPYI---SSVDFGKFEKELIERQVKMEVLRHG 98 (98)
T ss_dssp EEEEEEESCC---CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEEEEEEeCC---CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 5666655321 3566888899999999999999866
No 160
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=23.02 E-value=85 Score=27.53 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=25.2
Q ss_pred CccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 105 ~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
..-|+|||.-|.. ...+..+|+++|+.|+.|-.|.
T Consensus 77 ~~D~vii~S~Sg~---n~~~ie~A~~ake~G~~vIaIT 111 (170)
T 3jx9_A 77 AVDRVLIFTPDTE---RSDLLASLARYDAWHTPYSIIT 111 (170)
T ss_dssp TTCEEEEEESCSC---CHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEeCCCC---CHHHHHHHHHHHHCCCcEEEEe
Confidence 3357888876654 4558899999999999654443
No 161
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=22.59 E-value=2.6e+02 Score=22.32 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCC--C--ChHHHHHHHHHHHhCC--cEEEEEEecCCcchHHHHHHHHHhh
Q psy14660 107 MRIIAFVGSPVD--L--EERELTKLAKRLKKEK--VNVDIVSFGEEVVNTELLNTFISTL 160 (375)
Q Consensus 107 ~RIIvfvgSp~~--~--d~~~l~~lakkLKk~~--I~VdiIgfG~e~~n~~kL~~fi~~v 160 (375)
-.+|.|..+-.. | .-..+.++.+++++.+ |.|-.|++..+....+.+.+|++..
T Consensus 35 ~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~ 94 (174)
T 1xzo_A 35 VWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANY 94 (174)
T ss_dssp CEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTS
T ss_pred EEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHc
Confidence 356667655332 2 2456778888888886 5544444433324568889998763
No 162
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=22.59 E-value=3.6e+02 Score=22.98 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC--Ch---------HH----HHHHHHHHHhCCcEEEEEEecCC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--EE---------RE----LTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~--d~---------~~----l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+++...+.+.+.++++... ++.+|| +++|.... .+ .- ...++..+++.||+|.+|.-|.-
T Consensus 102 ~N~~g~~~l~~~~~~~~~~--~~~~iv-~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v 176 (230)
T 3guy_A 102 NNLSSAINVLRELVKRYKD--QPVNVV-MIMSTAAQQPKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGM 176 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SCCEEE-EECCGGGTSCCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCeEE-EEeecccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcc
Confidence 4556666677776666432 223555 45553321 11 11 22345556667899999988864
No 163
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=22.47 E-value=2e+02 Score=22.82 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCC-CC---hHHHHHHHHHHHhCCcEEEEEEecCCc
Q psy14660 79 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD-LE---ERELTKLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 79 ~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~-~d---~~~l~~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.+.|...|.++=.+-.. +.... .. .+.||+=.+.+. .| -..+..+.+++++.|+.|.++|.....
T Consensus 25 ~~~G~L~f~~a~~~~~~-l~~~~--~~-~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 93 (130)
T 4dgh_A 25 ALEGPFFFAAAETFERV-MGSIQ--ET-PQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGANSRV 93 (130)
T ss_dssp ECCSSCCHHHHHHHHHH-HHHSS--SC-CSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred EEeeeEeehhHHHHHHH-HHHhc--cC-CCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 34577788776554443 33221 12 244555455555 34 456778899999999999999885543
No 164
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=22.43 E-value=63 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=25.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||++.+++.+. .-....+++.|++.|+.|++|-
T Consensus 3 k~IllgvTGs~a--a~k~~~l~~~L~~~g~~V~vv~ 36 (181)
T 1g63_A 3 GKLLICATASIN--VININHYIVELKQHFDEVNILF 36 (181)
T ss_dssp CCEEEEECSCGG--GGGHHHHHHHHTTTSSCEEEEE
T ss_pred CEEEEEEECHHH--HHHHHHHHHHHHHCCCEEEEEE
Confidence 577777765442 2246788999999999999874
No 165
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=22.11 E-value=49 Score=30.01 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=25.0
Q ss_pred EEEEEEcC--CCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 108 RIIAFVGS--PVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 108 RIIvfvgS--p~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
||++++.+ +.+..+..+..+++.|++.|..|.++..+
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecC
Confidence 55555443 22223556778888888888888888876
No 166
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.95 E-value=1e+02 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=28.1
Q ss_pred cEEEEEEcC--C-C-CCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 107 MRIIAFVGS--P-V-DLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 107 ~RIIvfvgS--p-~-~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
+||++++.. | . +.-+..+..+++.|.+.|..|.||.-.
T Consensus 3 MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~ 44 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS 44 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred eEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 687777644 1 2 233566889999999999999999843
No 167
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=21.87 E-value=1.6e+02 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=30.9
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
.+||.|++.... +.-++....+.|+..|+.|.+++...
T Consensus 5 ~kkv~ill~~g~--~~~e~~~~~~~l~~ag~~v~~~s~~~ 42 (190)
T 4e08_A 5 SKSALVILAPGA--EEMEFIIAADVLRRAGIKVTVAGLNG 42 (190)
T ss_dssp CCEEEEEECTTC--CHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CcEEEEEECCCc--hHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 368888887543 67788888899999999999999854
No 168
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=21.82 E-value=1.5e+02 Score=27.79 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
-..+.+.+++|+++||.|.||.+-+-.. ..+.+.+++... .++|+|..+
T Consensus 213 ~~~a~~Aa~~L~~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~-------~~vvvvEe~ 262 (324)
T 1w85_B 213 VHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKT-------GRAIVVQEA 262 (324)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSEEESCCHHHHHHHHHHH-------SCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeeecCCCHHHHHHHHhhC-------CcEEEEeCC
Confidence 4567788999999999999999987332 345566666653 257777543
No 169
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=21.82 E-value=70 Score=28.56 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=25.5
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEE
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIg 142 (375)
+||++.+++.+.. . -...+++.|++.|+.|++|-
T Consensus 9 k~IllgvTGs~aa-~-k~~~l~~~L~~~g~~V~vv~ 42 (194)
T 1p3y_1 9 KKLLIGICGSISS-V-GISSYLLYFKSFFKEIRVVM 42 (194)
T ss_dssp CEEEEEECSCGGG-G-GTHHHHHHHTTTSSEEEEEE
T ss_pred CEEEEEEECHHHH-H-HHHHHHHHHHHCCCEEEEEE
Confidence 6888888665432 2 35778899999999999874
No 170
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=21.80 E-value=1.9e+02 Score=23.22 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHhCCcEEEEEEecCCcc-hHHHHHHHHHhhCCCCCCCeeEEEecCC
Q psy14660 120 EERELTKLAKRLKKEKVNVDIVSFGEEVV-NTELLNTFISTLNGKDGSGSHMVTVAVG 176 (375)
Q Consensus 120 d~~~l~~lakkLKk~~I~VdiIgfG~e~~-n~~kL~~fi~~vn~~~~~~Sh~v~vp~g 176 (375)
.-....+.++.|++.|++|.+|.+..--. ..+.|..++.. -.++++|-.+
T Consensus 24 ~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~-------~~~vvvvE~~ 74 (118)
T 3ju3_A 24 QKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSS-------ANLVIDVESN 74 (118)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTT-------CSCCCCCCCC
T ss_pred cHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcC-------CCEEEEEECC
Confidence 36678888999999999999999998543 45667767643 2366666554
No 171
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=21.61 E-value=53 Score=30.56 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=27.5
Q ss_pred CCCCccEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 102 GKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 102 ~k~~~~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
++..++||+++.+. ....-.-+..+++.|++.|..|.+++-+
T Consensus 16 ~~~~~MrIl~~~~~-~~Gh~~~~~~la~~L~~~GheV~v~~~~ 57 (412)
T 3otg_A 16 IEGRHMRVLFASLG-THGHTYPLLPLATAARAAGHEVTFATGE 57 (412)
T ss_dssp --CCSCEEEEECCS-SHHHHGGGHHHHHHHHHTTCEEEEEECG
T ss_pred cccceeEEEEEcCC-CcccHHHHHHHHHHHHHCCCEEEEEccH
Confidence 34455788776533 2222333568999999999999998764
No 172
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.54 E-value=2.6e+02 Score=23.52 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcc--hHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVV--NTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~--n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
+-.|+|.+ |+.-+..+.+.+|..||+|-. -+....+ ..++|+.|-.. |-..-+|....
T Consensus 3 qifvvfss-----dpeilkeivreikrqgvrvvl-lysdqdekrrrerleefekq-------gvdvrtvedke 62 (162)
T 2l82_A 3 QIFVVFSS-----DPEILKEIVREIKRQGVRVVL-LYSDQDEKRRRERLEEFEKQ-------GVDVRTVEDKE 62 (162)
T ss_dssp EEEEEEES-----CHHHHHHHHHHHHHTTCEEEE-EECCSCHHHHHHHHHHHHTT-------TCEEEECCSHH
T ss_pred eEEEEecC-----CHHHHHHHHHHHHhCCeEEEE-EecCchHHHHHHHHHHHHHc-------CCceeeeccHH
Confidence 34556643 677788888999999998754 4555444 35778888432 45555665543
No 173
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.50 E-value=1.4e+02 Score=26.12 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=29.7
Q ss_pred cEEEEEEcCCC--CCC--hHHHHHHHHHHHhC--CcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPV--DLE--ERELTKLAKRLKKE--KVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~--~~d--~~~l~~lakkLKk~--~I~VdiIgfG~e 146 (375)
++|+++.|||. ... ..-+..+++.+++. +..|.+|-++..
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~ 50 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKE 50 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGS
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 58999999998 332 33344567788877 899999998763
No 174
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=21.49 E-value=1.9e+02 Score=25.80 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=0.0
Q ss_pred EEEEecCceeEEecCCCCHHHHHHhhcccCCCCCccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCC---------
Q psy14660 50 GLLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE--------- 120 (375)
Q Consensus 50 GLVt~ag~a~vl~pLT~D~~~Il~~L~~l~~~G~~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d--------- 120 (375)
.||-.+|-...-.....+...+...++ +++...+.+.+.++++...+....|||.+.+.-....
T Consensus 108 ~lvnnAg~~~~~~~~~~~~~~~~~~~~-------~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a 180 (280)
T 3pgx_A 108 VVVANAGVLSWGRVWELTDEQWDTVIG-------VNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSA 180 (280)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHh-------hhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccCCCCchhHHH
Q ss_pred -----hHHHHHHHHHHHhCCcEEEEEEec
Q psy14660 121 -----ERELTKLAKRLKKEKVNVDIVSFG 144 (375)
Q Consensus 121 -----~~~l~~lakkLKk~~I~VdiIgfG 144 (375)
..-...++..+.+.||+|.+|.-|
T Consensus 181 sKaa~~~~~~~la~e~~~~gi~vn~v~PG 209 (280)
T 3pgx_A 181 SKHGLTALTNTLAIELGEYGIRVNSIHPY 209 (280)
T ss_dssp HHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhhhcCeEEEEEeeC
No 175
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}
Probab=21.33 E-value=5.1e+02 Score=24.27 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCCCh-------------HH----HHHHHHHHHhCCcEEEEEEecC
Q psy14660 84 INFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEE-------------RE----LTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 84 ~~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~d~-------------~~----l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+++...+.+.+.++.+... ....||| +++|.....+ .- ...+++.++ .||+|.+|.-|.
T Consensus 159 vN~~g~~~l~~~~lp~m~~-~~~g~IV-~iSS~~~~~~~~~~~~~~Y~aSKaal~~l~~~la~e~~-~gIrvn~v~PG~ 234 (346)
T 3kvo_A 159 VNTRGTYLASKACIPYLKK-SKVAHIL-NISPPLNLNPVWFKQHCAYTIAKYGMSMYVLGMAEEFK-GEIAVNALWPKT 234 (346)
T ss_dssp HTHHHHHHHHHHHHHHHTT-CSSCEEE-EECCCCCCCGGGTSSSHHHHHHHHHHHHHHHHHHHHTT-TTCEEEEEECSB
T ss_pred HHhHHHHHHHHHHHHHHHH-CCCCEEE-EECCHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCcEEEEEeCCC
Confidence 4566666777777666432 2234554 5566543222 11 223455556 799999999995
No 176
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=21.25 E-value=1.5e+02 Score=26.31 Aligned_cols=38 Identities=11% Similarity=0.145 Sum_probs=25.6
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 145 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~ 145 (375)
+-|++++.||.+ +......+.+.++..+..|.++..|-
T Consensus 58 k~I~l~InSPGG-~v~a~~~I~~~i~~~~~pV~~~v~g~ 95 (208)
T 2cby_A 58 KDISLYINSPGG-SISAGMAIYDTMVLAPCDIATYAMGM 95 (208)
T ss_dssp SCEEEEEEECCB-CHHHHHHHHHHHHHCSSCEEEEEEEE
T ss_pred CCEEEEEECCCC-CHHHHHHHHHHHHhcCCCEEEEECcE
Confidence 689999999975 55555566666666666666655543
No 177
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=21.25 E-value=76 Score=28.59 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=24.1
Q ss_pred ccEEEEEEcCCCCCChHHHHHHHHHHHh-CCcEEEEEE
Q psy14660 106 KMRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVS 142 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l~~lakkLKk-~~I~VdiIg 142 (375)
++||++.+++.+. .-....+++.|++ .|+.|++|-
T Consensus 19 ~k~IllgvTGsia--a~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVA--ALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGG--GGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHH--HHHHHHHHHHHhcccCCEEEEEE
Confidence 3688888876553 2234788899999 899999883
No 178
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=21.25 E-value=4.2e+02 Score=23.19 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=16.7
Q ss_pred HHHHHHHhCCcEEEEEEecCCc
Q psy14660 126 KLAKRLKKEKVNVDIVSFGEEV 147 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~e~ 147 (375)
.++..+.+.||+|.+|.-|--.
T Consensus 171 ~la~e~~~~gi~vn~v~PG~v~ 192 (250)
T 3nyw_A 171 SLYRELAPLGIRVTTLCPGWVN 192 (250)
T ss_dssp HHHHHHGGGTEEEEEEEESSBC
T ss_pred HHHHHhhhcCcEEEEEecCccc
Confidence 3566677779999999998643
No 179
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=21.22 E-value=79 Score=28.57 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
+..+..+++.|++.|..|.+|.....
T Consensus 33 ~~~~~~l~~~L~~~G~~v~v~~~~~~ 58 (342)
T 2iuy_A 33 QWVVANLMDGLLELGHEVFLLGAPGS 58 (342)
T ss_dssp HHHHHHHHHHHHHTTCEEEEESCTTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 55677889999999999998887653
No 180
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=21.22 E-value=1.1e+02 Score=25.64 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=24.0
Q ss_pred ccEEEEEEcCCCCCChHHH-HHHHHHHHhCCcEEEEEE
Q psy14660 106 KMRIIAFVGSPVDLEEREL-TKLAKRLKKEKVNVDIVS 142 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d~~~l-~~lakkLKk~~I~VdiIg 142 (375)
+.++|+|+|.+.. ....+ ..++++|...++.++++-
T Consensus 9 ~~~~I~l~G~~Gs-GKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRS-GKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTS-SHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCC-CHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567888877643 44444 456777888888887654
No 181
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=21.22 E-value=3e+02 Score=24.00 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHhhccCCCCCccEEEEEEcCCCCC---Ch--------H----HHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 85 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL---EE--------R----ELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 85 ~l~~gI~vA~laLKhr~~k~~~~RIIvfvgSp~~~---d~--------~----~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++...+.+.+.++++...... ...||+++|.... .. . -...++..++..||+|.+|.-|--
T Consensus 132 n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v 207 (266)
T 3o38_A 132 TLTSVMRATRAALRYFRGVDH-GGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIA 207 (266)
T ss_dssp HTHHHHHHHHHHHHHHHTSSC-CEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC
T ss_pred HhHHHHHHHHHHHHHHHhcCC-CeEEEEeCCHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcc
Confidence 444555566665555432222 3445666664321 11 1 122355667778999999999864
No 182
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=20.95 E-value=3.7e+02 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=31.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
++|+|+.+|..+.++.-+..+++.++..++.|.++.+...
T Consensus 253 ~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~ 292 (402)
T 1e5d_A 253 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKAC 292 (402)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTS
T ss_pred CcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 6888888887655566677788889888988888877643
No 183
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=20.90 E-value=1.2e+02 Score=26.08 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 108 RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
+-|.|.|+.-...+..+.++.+.+++.|+.|.+..=|......+.+..+.+.
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~~~ 122 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEV 122 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHT
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHHHh
Confidence 3466666422223444788999999999887777666431134566666654
No 184
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=20.80 E-value=1e+02 Score=27.84 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=36.1
Q ss_pred cEEEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEe---cCCcchHHHHHHHHHhhCCCCCCCeeEEEecC-CCchhhH
Q psy14660 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF---GEEVVNTELLNTFISTLNGKDGSGSHMVTVAV-GPHLSDA 182 (375)
Q Consensus 107 ~RIIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgf---G~e~~n~~kL~~fi~~vn~~~~~~Sh~v~vp~-g~~Lsd~ 182 (375)
-+|++.++..- +..- .+..++.||.+.++.. .+.....+.+.+.+... +..++++-. +..|+..
T Consensus 35 ~~I~~Visn~~--~a~~----l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~------~~Dliv~agy~~il~~~ 102 (209)
T 4ds3_A 35 AEIVAVFSDKA--EAGG----LAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVL------KPDIICLAGYMRLLSGR 102 (209)
T ss_dssp EEEEEEEESCT--TCTH----HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHH------CCSEEEESSCCSCCCHH
T ss_pred cEEEEEEECCc--ccHH----HHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhc------CCCEEEEeccccCcCHH
Confidence 46776665421 2111 2455889999998753 22111122333333332 245666655 4557777
Q ss_pred hhhCC
Q psy14660 183 LISSP 187 (375)
Q Consensus 183 l~ssp 187 (375)
+++.|
T Consensus 103 ~l~~~ 107 (209)
T 4ds3_A 103 FIAPY 107 (209)
T ss_dssp HHGGG
T ss_pred HHhhc
Confidence 77654
No 185
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=20.61 E-value=1.9e+02 Score=27.66 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhCCcEEEEEEecCCc-chHHHHHHHHHhhCCCCCCCeeEEEecCCC
Q psy14660 121 ERELTKLAKRLKKEKVNVDIVSFGEEV-VNTELLNTFISTLNGKDGSGSHMVTVAVGP 177 (375)
Q Consensus 121 ~~~l~~lakkLKk~~I~VdiIgfG~e~-~n~~kL~~fi~~vn~~~~~~Sh~v~vp~g~ 177 (375)
-..+.+.+++|+++||.|.||.+-.-. ...+.+.+++... .++|+|..+.
T Consensus 228 ~~~a~~Aa~~L~~~Gi~v~vv~~~~l~P~d~~~i~~~~~~~-------~~vv~vEe~~ 278 (341)
T 2ozl_B 228 VGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKT-------NHLVTVEGGW 278 (341)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECCEEETCCHHHHHHHHHHH-------SCEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCeEEEeeeeecCCCHHHHHHHHhcC-------CeEEEEecCc
Confidence 566788899999999999999997732 2345566666653 2678886654
No 186
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=20.60 E-value=2.2e+02 Score=24.51 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=9.7
Q ss_pred HHHHHHHHHhCCcEEEEE
Q psy14660 124 LTKLAKRLKKEKVNVDIV 141 (375)
Q Consensus 124 l~~lakkLKk~~I~VdiI 141 (375)
=..+++.|.+.|.+|.++
T Consensus 27 G~~ia~~l~~~G~~V~~~ 44 (247)
T 3i1j_A 27 GAAAARAYAAHGASVVLL 44 (247)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 344566666666654433
No 187
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=20.59 E-value=1.7e+02 Score=27.51 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=31.3
Q ss_pred ccEEEEEEcCCCCCC--hHHHHHHHHHHHhCCcEEEEEEecCC
Q psy14660 106 KMRIIAFVGSPVDLE--ERELTKLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 106 ~~RIIvfvgSp~~~d--~~~l~~lakkLKk~~I~VdiIgfG~e 146 (375)
.+||+|+.++|.... ..-+...++.|++.|..|.++-+...
T Consensus 22 ~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~ 64 (280)
T 4gi5_A 22 SMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAM 64 (280)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 389999999997543 22244568889999999999988654
No 188
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=20.48 E-value=1.8e+02 Score=25.55 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCcEEEEEEecCCcchHHHHHHHHHh
Q psy14660 109 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTFIST 159 (375)
Q Consensus 109 IIvfvgSp~~~d~~~l~~lakkLKk~~I~VdiIgfG~e~~n~~kL~~fi~~ 159 (375)
|.|+.||. .|-..+.+.++.|++.||..++--.|.+ ...+++.+|++.
T Consensus 2 V~Iimgs~--SD~~v~~~a~~~l~~~gi~~dv~V~saH-R~p~~~~~~~~~ 49 (157)
T 2ywx_A 2 ICIIMGSE--SDLKIAEKAVNILKEFGVEFEVRVASAH-RTPELVEEIVKN 49 (157)
T ss_dssp EEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TCHHHHHHHHHH
T ss_pred EEEEEccH--HHHHHHHHHHHHHHHcCCCeEEEEEccc-CCHHHHHHHHHh
Confidence 55666763 3666777888888888888665444443 456777777764
No 189
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=20.42 E-value=1.9e+02 Score=26.03 Aligned_cols=21 Identities=5% Similarity=0.131 Sum_probs=16.4
Q ss_pred HHHHHHHhCCcEEEEEEecCC
Q psy14660 126 KLAKRLKKEKVNVDIVSFGEE 146 (375)
Q Consensus 126 ~lakkLKk~~I~VdiIgfG~e 146 (375)
.++..+...||+|.+|.-|--
T Consensus 190 ~la~e~~~~gI~vn~v~PG~v 210 (272)
T 4dyv_A 190 STSLDGRVHDIACGQIDIGNA 210 (272)
T ss_dssp HHHHHHGGGTEEEEEEEEEEC
T ss_pred HHHHHhCccCEEEEEEEECcc
Confidence 346667778999999998854
No 190
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=20.21 E-value=2.6e+02 Score=22.50 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=26.8
Q ss_pred EEEEEEcCCCCCC------hHHHHHHHHHHHhCCcEEEEEEecCCcch
Q psy14660 108 RIIAFVGSPVDLE------ERELTKLAKRLKKEKVNVDIVSFGEEVVN 149 (375)
Q Consensus 108 RIIvfvgSp~~~d------~~~l~~lakkLKk~~I~VdiIgfG~e~~n 149 (375)
+-|+|+|+.+... ..=...+.+.|...+..+.++++|-....
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~ 50 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGET 50 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCC
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCcc
Confidence 3456667766532 12245567788888888888877765543
Done!