RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14660
(375 letters)
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 78.5 bits (192), Expect = 2e-17
Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 19/167 (11%)
Query: 4 ESTMICVDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA 62
+ ++C+D M N + + + + + + + + ++ + L+
Sbjct: 3 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNP 62
Query: 63 TLTSDVG------------------RILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKN 104
D I SK+ + + + + + K
Sbjct: 63 LSGGDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKF 122
Query: 105 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTE 151
K I F + +L + LKK +++
Sbjct: 123 EKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDG 169
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 41.1 bits (95), Expect = 8e-05
Identities = 19/194 (9%), Positives = 49/194 (25%), Gaps = 32/194 (16%)
Query: 4 ESTMICVDNSDFMRNGDFL--PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL 61
+S + VD S M T + V SK S+ + + ++ +
Sbjct: 3 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKN 62
Query: 62 ATLTSDVGRILSKLH-----------------------QVQPNGNINFMTGIRIAHLALK 98
+ ++ + + + + + + +
Sbjct: 63 SVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFS 122
Query: 99 HRQGKNHKMRIIAF--VGSPVDLEERELTKLAKRLKKEKVNVDIVS-----FGEEVVNTE 151
Q K RI+ F +P + + ++ + + + +
Sbjct: 123 DVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDISL 182
Query: 152 LLNTFISTLNGKDG 165
IS +D
Sbjct: 183 FYRDIISIAEDEDL 196
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein,
RoRNP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 174
Score = 36.0 bits (82), Expect = 0.003
Identities = 13/139 (9%), Positives = 40/139 (28%), Gaps = 9/139 (6%)
Query: 6 TMICVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT 65
++ +D S M + A + + E + ++A +D +
Sbjct: 8 FLLAIDVSASMNQRVLGSILNASVVAAAMCMLV----ARTEKDSHMVAFSDEMLPCPITV 63
Query: 66 SDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELT 125
+ + + + G+ + + A + + I+ + T
Sbjct: 64 NMLLHEVVEKMSDITMGSTDCALPMLWA-----QKTNTAADIFIVFTDCETNVEDVHPAT 118
Query: 126 KLAKRLKKEKVNVDIVSFG 144
L + +K + ++
Sbjct: 119 ALKQYREKMGIPAKLIVCA 137
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 29.6 bits (66), Expect = 0.10
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 197 GAPGSSYEFGVDPNED 212
G+ GSS EF +DPNE
Sbjct: 1 GSSGSSGEFAIDPNEP 16
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga
maritima [TaxId: 2336]}
Length = 389
Score = 29.4 bits (64), Expect = 0.72
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 108 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 144
R++ SP+ R+L A+ KK V I
Sbjct: 4 RVLLTEESPI----RKLVPFAEMAKKR--GVRIHHLN 34
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema
pallidum [TaxId: 160]}
Length = 240
Score = 28.5 bits (63), Expect = 1.1
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 10/95 (10%)
Query: 124 LTKLAKRLKKEKVNVDIVSFGEEVVNTELLN----------TFISTLNGKDGSGSHMVTV 173
L + +KK+ + + IV F V E + +V+V
Sbjct: 18 LEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSV 77
Query: 174 AVGPHLSDALISSPIIQGEDGAGGAPGSSYEFGVD 208
AL S D GA + +
Sbjct: 78 GNVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSN 112
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 28.6 bits (63), Expect = 1.2
Identities = 30/165 (18%), Positives = 48/165 (29%), Gaps = 13/165 (7%)
Query: 215 LALALRVSMEEQRARQESEARRAAE-GASGADTSASSAVPKPTAEAKDAPGDMATAAHPV 273
+ + V E GA + + VPK T + A G A
Sbjct: 103 IPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSK 162
Query: 274 GGQPDFATMTEEEQIAFA---MQMSMQDTQEPAASSSKAPASAAASEEAKAEPMDTDEMV 330
D +IA ++ +E ASS+ EE K +
Sbjct: 163 HLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYK-------QQF 215
Query: 331 NDAAFLQSVLENLPGVDPQSAEVRHALSSSAEKPAKKKDEKKEKK 375
+ S +DP E R + + E K + + +KK
Sbjct: 216 ANPYIAASRGYVDMVIDP--RETRKYIMRALEVCETKVEYRPKKK 258
>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 166
Score = 27.8 bits (61), Expect = 1.7
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 107 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEVVNTELLNTF--ISTLNGKD 164
M+++ + + E+ EL RLK+E V I SF + + + T + +
Sbjct: 1 MKVLFLTAN--EFEDVELIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDKVN 58
Query: 165 GSGSHMVTVAVGPH 178
+ + G
Sbjct: 59 PEEFDALVLPGGRA 72
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 28.4 bits (62), Expect = 1.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 120 EERELTKLAKRLKKEKVNVDIVSFGEEV 147
EE +L L K L V + FGE V
Sbjct: 402 EEEKLLALGKLLALRGQEVSLARFGEGV 429
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid
leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 132
Score = 27.0 bits (60), Expect = 2.0
Identities = 7/38 (18%), Positives = 22/38 (57%)
Query: 324 MDTDEMVNDAAFLQSVLENLPGVDPQSAEVRHALSSSA 361
M+T++++ +Q+ ++ L + S E+ + + ++A
Sbjct: 10 MNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAA 47
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 133
Score = 26.6 bits (59), Expect = 2.5
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 324 MDTDEMVNDAAFLQSVLENLPGVDPQSAEVRHALSSSA 361
M+ ++++ LQ+ L+ L D QS ++ + + + +
Sbjct: 7 MNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMS 44
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 26.1 bits (57), Expect = 3.6
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 95 LALKHRQGKNHKMRIIAFVGSPV 117
L + +R KM +I + G+ +
Sbjct: 81 LQIPNRSLDRAKMAVIEYKGNCL 103
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 174
Score = 26.6 bits (58), Expect = 4.3
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 107 MRIIAFVGSP-VDLEERELTKLAKRLKKEKVNVDIVSFGE 145
++++ GS + A L +++++
Sbjct: 1 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG 40
>d1djaa_ e.3.1.1 (A:) beta-Lactamase, class A {Staphylococcus aureus
[TaxId: 1280]}
Length = 258
Score = 26.3 bits (57), Expect = 5.4
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMV--NDAAFLQSVLENLPG 345
D + AS+S A SA E+ ++ + +D +LE G
Sbjct: 33 DKRFAYASTSHAINSAILLEQVPYNKLNKKVHINKDDIVAYSPILEKYVG 82
>d1buea_ e.3.1.1 (A:) beta-Lactamase, class A {Enterobacter cloacae,
NMC-A carbapenemase [TaxId: 550]}
Length = 265
Score = 26.3 bits (57), Expect = 5.9
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMV 330
+ + P SS K +AA + ++ ++ +++V
Sbjct: 37 NERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIV 69
>d2cc1a1 e.3.1.1 (A:27-293) beta-Lactamase, class A {Mycobacterium
fortuitum [TaxId: 1766]}
Length = 262
Score = 26.4 bits (57), Expect = 6.5
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMV 330
D S+ K +A + A+ + D V
Sbjct: 36 DEMFAMCSTFKGYVAARVLQMAEHGEISLDNRV 68
>d1iysa_ e.3.1.1 (A:) beta-Lactamase, class A {Escherichia coli,
TOHO-1 [TaxId: 562]}
Length = 261
Score = 25.6 bits (55), Expect = 9.3
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMV 330
D + S+SK A+AA ++++++ ++ V
Sbjct: 36 DERFAMCSTSKVMAAAAVLKQSESDKHLLNQRV 68
>d1i2sa_ e.3.1.1 (A:) beta-Lactamase, class A {Bacillus
licheniformis [TaxId: 1402]}
Length = 255
Score = 25.6 bits (55), Expect = 9.9
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 298 DTQEPAASSSKAPASAAASEEAKAEPMDTDEMVNDAAF 335
D + AS+ KA ++ E ++
Sbjct: 32 DERFAFASTIKALTVGVLLQQKSIEDLNQRITYTRDDL 69
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.125 0.337
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,242,990
Number of extensions: 55468
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 26
Length of query: 375
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,213,086
Effective search space: 349368768
Effective search space used: 349368768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.7 bits)