BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14661
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 29 LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINXX 86
+KDA++ +EE + +EA++V L IEKMD++L+ L C+ L+LSTN IEKI+
Sbjct: 8 IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 67
Query: 87 XXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
RN IK L+ +A+TLEELW+SYN I GI + L+VLYMSNN
Sbjct: 68 SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 127
Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLDG 197
+ W E KL L DL+ GNPL E Y+ EV KRLPNLKKLDG
Sbjct: 128 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 182
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 29 LKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMIEKINXX 86
+KDA++ +EE + +EA++V L IEKMD++L+ L C+ L+LSTN IEKI+
Sbjct: 7 IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66
Query: 87 XXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNL 146
RN IK L+ +A+TLEELW+SYN I GI + L+VLYMSNN
Sbjct: 67 SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126
Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLDG 197
+ W E KL L DL+ GNPL E Y+ EV KRLPNLKKLDG
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 104 SFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
+FA L ++TLE L + YN+I KG V KLK L +S+N
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 104 SFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
+FA L ++TLE L + YN+I KG V KLK L +S+N
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 108 LEPLAETLEE---LWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLID 164
+E L TL++ + S N I K G ++R+LK L ++NN + E + P L +
Sbjct: 34 IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQA-LPDLTE 92
Query: 165 LVFCGNPLVEGMD-DPL 180
L+ N LVE D DPL
Sbjct: 93 LILTNNSLVELGDLDPL 109
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ + N + L+PLA TLE L +S N
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNK 184
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 185 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 229
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
LA LTN L+L N I I+ + N I + L L +L++L S N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFSSN 161
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI 163
+ K + + L+ L +S+N V + + KL SLI
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 201
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 271
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 272 QISNISPLAGLTALTNLELNENQLEDISPISNL 304
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ + N + L+PLA TLE L +S N
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNK 184
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 185 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 229
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
LA LTN L+L N I I+ + N I + L L +L++L S N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFSSN 161
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI 163
+ K + + L+ L +S+N V + + KL SLI
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 201
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 271
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 272 QISNISPLAGLTALTNLELNENQLEDISPISNL 304
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ + N + L+PLA TLE L +S N
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQV---TDLKPLANLTTLERLDISSNK 184
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 185 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 229
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
LA LTN L+L N I I+ + N I + L L +L++L S N
Sbjct: 103 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLNFSSN 161
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI 163
+ K + + L+ L +S+N V + + KL SLI
Sbjct: 162 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 201
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 271
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 272 QISNISPLAGLTALTNLELNENQLEDISPISNL 304
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 98 ARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
+ N +++ LE L S N +E G+ + +L+ L + NN +++ A L
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530
Query: 158 ECPSLIDLVFCGNPLV--EGMDDPL 180
CP L+ L GN L EG+ + L
Sbjct: 531 SCPRLVLLNLQGNSLCQEEGIQERL 555
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 98 ARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
+ N +++ LE L S N +E G+ + +L+ L + NN +++ A L
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530
Query: 158 ECPSLIDLVFCGNPLV--EGMDDPL 180
CP L+ L GN L EG+ + L
Sbjct: 531 SCPRLVLLNLQGNSLCQEEGIQERL 555
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 100 NNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
NN+K+ + L PL LE L VS N +EK + LK++ + NN +K KL +
Sbjct: 121 NNLKALSDLPPL---LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK------KLPDL 171
Query: 160 PSLIDLVFCGN 170
P ++ + GN
Sbjct: 172 PPSLEFIAAGN 182
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 LKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKRLPNLKKL 195
LK+L +S N +K E K+ L +L GN L + D Y S +++R P L +L
Sbjct: 198 LKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
Query: 196 DGEVLP 201
DG LP
Sbjct: 257 DGHELP 262
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 LKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKRLPNLKKL 195
LK+L +S N +K E K+ L +L GN L + D Y S +++R P L +L
Sbjct: 198 LKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRL 256
Query: 196 DGEVLP 201
DG LP
Sbjct: 257 DGHELP 262
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 LKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKRLPNLKKL 195
LK+L +S N +K E K+ L +L GN L + D Y S +++R P L +L
Sbjct: 198 LKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 256
Query: 196 DGEVLP 201
DG LP
Sbjct: 257 DGHELP 262
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 LKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKRLPNLKKL 195
LK+L +S N +K E K+ L +L GN L + D Y S +++R P L +L
Sbjct: 192 LKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 250
Query: 196 DGEVLP 201
DG LP
Sbjct: 251 DGHELP 256
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 LKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKRLPNLKKL 195
LK+L +S N +K E K+ L +L GN L + D Y S +++R P L +L
Sbjct: 192 LKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 250
Query: 196 DGEVLP 201
DG LP
Sbjct: 251 DGHELP 256
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ L+PLA TLE L +S N
Sbjct: 132 LTNLNRLELSSNTISDISALSGLTSLQQLSFGN----QVTDLKPLANLTTLERLDISSNK 187
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 188 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 232
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 216 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 274
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 275 QISNISPLAGLTALTNLELNENQLEDISPISNL 307
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
LA LT E+L +S+N + I+ N I L L L+EL ++ N
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGN 230
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL 162
++ + + L L ++NN + A L + L
Sbjct: 231 QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 269
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ L+PLA TLE L +S N
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGN----QVTDLKPLANLTTLERLDISSNK 188
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 189 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 233
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 275
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 276 QISNISPLAGLTALTNLELNENQLEDISPISNL 308
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ L+PLA TLE L +S N
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFGN----QVTDLKPLANLTTLERLDISSNK 183
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 184 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 228
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 270
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 271 QISNISPLAGLTALTNLELNENQLEDISPISNL 303
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 67 LTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAE--TLEELWVSYNY 124
LTN +L LS+N I I+ L+PLA TLE L +S N
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNFGN----QVTDLKPLANLTTLERLDISSNK 183
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + L+ L +NN + ++ LG +L +L GN L
Sbjct: 184 VSDISVLAKLTNLESLIATNN---QISDITPLGILTNLDELSLNGNQL 228
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 64 LAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVSYN 123
L +LTN ++LSL+ N ++ I A N I + A L L + L EL + N
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGAN 270
Query: 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
I + + L L ++ N +++ + L
Sbjct: 271 QISNISPLAGLTALTNLELNENQLEDISPISNL 303
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINXXXXXXXXXXXXXARNNIKSFAGLEPLAETLEELWVS 121
+ + TN ++L LS N I ++ RN +K+ G+ + L L++
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--SACLSRLFLD 114
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
N + T + ++ L++L + NN +K V LG L L GN +
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,567,771
Number of Sequences: 62578
Number of extensions: 205551
Number of successful extensions: 454
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 55
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)