Query psy14661
Match_columns 202
No_of_seqs 123 out of 1715
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 17:26:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ds9_A Outer arm dynein; leuci 99.8 8.7E-23 3E-27 150.1 -0.4 178 25-202 2-186 (198)
2 3e6j_A Variable lymphocyte rec 99.8 2.7E-19 9.1E-24 134.3 14.3 161 39-200 34-200 (229)
3 3m19_A Variable lymphocyte rec 99.8 1.2E-18 3.9E-23 132.4 14.5 147 43-196 33-185 (251)
4 2o6q_A Variable lymphocyte rec 99.8 5.1E-18 1.7E-22 130.2 14.5 133 43-176 59-197 (270)
5 1p9a_G Platelet glycoprotein I 99.8 4.5E-18 1.5E-22 132.0 14.3 147 43-196 29-178 (290)
6 2o6q_A Variable lymphocyte rec 99.8 8.4E-18 2.9E-22 129.0 14.5 150 41-197 33-188 (270)
7 2v9t_B SLIT homolog 2 protein 99.8 9.9E-18 3.4E-22 125.0 14.0 136 41-177 28-169 (220)
8 3m19_A Variable lymphocyte rec 99.8 1.8E-17 6.1E-22 125.8 15.5 143 33-176 47-195 (251)
9 3rfs_A Internalin B, repeat mo 99.8 1.1E-17 3.9E-22 128.4 14.3 146 43-196 61-211 (272)
10 4g8a_A TOLL-like receptor 4; l 99.8 3.3E-18 1.1E-22 144.7 11.0 143 35-177 42-190 (635)
11 1xeu_A Internalin C; cellular 99.8 6.9E-18 2.4E-22 129.2 11.6 140 43-196 39-178 (263)
12 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4.2E-22 129.6 12.6 141 43-196 66-206 (291)
13 1ozn_A Reticulon 4 receptor; N 99.7 2.2E-17 7.4E-22 127.5 13.3 148 42-196 77-231 (285)
14 3rfs_A Internalin B, repeat mo 99.7 3.2E-17 1.1E-21 125.9 13.5 147 43-197 39-188 (272)
15 1ozn_A Reticulon 4 receptor; N 99.7 2.8E-17 9.6E-22 126.9 13.0 148 42-196 53-207 (285)
16 2o6s_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 116.9 16.5 136 41-177 24-165 (208)
17 1h6u_A Internalin H; cell adhe 99.7 3.4E-17 1.2E-21 128.0 13.1 141 43-196 61-201 (308)
18 2v70_A SLIT-2, SLIT homolog 2 99.7 6.5E-17 2.2E-21 120.6 13.9 136 41-177 28-170 (220)
19 3e6j_A Variable lymphocyte rec 99.7 2.7E-17 9.2E-22 123.4 11.8 144 43-196 17-165 (229)
20 2v9t_B SLIT homolog 2 protein 99.7 5E-17 1.7E-21 121.2 12.7 141 47-196 13-158 (220)
21 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 122.2 9.3 142 43-196 42-187 (197)
22 4fcg_A Uncharacterized protein 99.7 2E-17 6.8E-22 130.4 10.5 127 44-172 103-241 (328)
23 1p9a_G Platelet glycoprotein I 99.7 2.1E-16 7E-21 122.6 15.5 132 43-176 75-211 (290)
24 1h6u_A Internalin H; cell adhe 99.7 6.3E-17 2.1E-21 126.5 12.6 143 41-196 81-223 (308)
25 2z62_A TOLL-like receptor 4, v 99.7 3.8E-17 1.3E-21 125.6 11.2 137 41-177 24-166 (276)
26 4fcg_A Uncharacterized protein 99.7 1.7E-17 6E-22 130.8 9.4 146 44-198 80-237 (328)
27 3zyj_A Leucine-rich repeat-con 99.7 5.5E-17 1.9E-21 132.6 12.2 110 40-149 83-221 (440)
28 2ell_A Acidic leucine-rich nuc 99.7 2.7E-17 9.3E-22 117.4 9.2 136 41-176 20-163 (168)
29 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.8E-22 126.0 9.0 151 42-201 60-210 (263)
30 3zyi_A Leucine-rich repeat-con 99.7 8.3E-17 2.8E-21 132.0 12.4 137 38-175 92-257 (452)
31 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.8E-21 135.6 13.4 142 43-197 63-204 (605)
32 2xot_A Amphoterin-induced prot 99.7 1.3E-16 4.4E-21 127.3 12.7 145 40-191 34-188 (361)
33 2id5_A Lingo-1, leucine rich r 99.7 1.7E-16 5.7E-21 130.8 13.3 151 39-196 26-182 (477)
34 3zyj_A Leucine-rich repeat-con 99.7 1.4E-16 4.8E-21 130.2 12.7 149 40-196 107-285 (440)
35 2z80_A TOLL-like receptor 2, v 99.7 6.3E-17 2.1E-21 128.6 10.1 135 41-176 48-190 (353)
36 1h6t_A Internalin B; cell adhe 99.7 1.3E-16 4.5E-21 123.7 11.5 141 44-197 45-185 (291)
37 2v70_A SLIT-2, SLIT homolog 2 99.7 1.7E-16 6E-21 118.2 11.7 141 47-196 13-159 (220)
38 2z66_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 123.6 11.6 130 45-175 78-214 (306)
39 1a9n_A U2A', U2A'; complex (nu 99.7 1E-16 3.5E-21 115.3 9.5 131 42-172 16-152 (176)
40 2o6s_A Variable lymphocyte rec 99.7 7.3E-16 2.5E-20 113.6 13.6 142 47-197 9-155 (208)
41 2z66_A Variable lymphocyte rec 99.7 2.9E-16 1E-20 122.2 11.8 133 43-176 99-239 (306)
42 4fmz_A Internalin; leucine ric 99.7 3E-16 1E-20 124.1 11.9 123 64-196 217-339 (347)
43 3zyi_A Leucine-rich repeat-con 99.7 4.3E-16 1.5E-20 127.7 13.0 148 40-196 70-248 (452)
44 2xwt_C Thyrotropin receptor; s 99.7 1.1E-16 3.6E-21 120.6 8.6 144 44-196 54-211 (239)
45 2wfh_A SLIT homolog 2 protein 99.7 9.6E-16 3.3E-20 112.0 13.1 128 48-178 13-144 (193)
46 2xwt_C Thyrotropin receptor; s 99.7 1E-16 3.5E-21 120.7 7.7 133 43-176 29-172 (239)
47 1w8a_A SLIT protein; signaling 99.7 9.3E-16 3.2E-20 111.9 12.6 129 47-178 10-144 (192)
48 3vq2_A TLR4, TOLL-like recepto 99.7 3.1E-16 1.1E-20 132.7 11.4 139 39-177 26-170 (606)
49 2je0_A Acidic leucine-rich nuc 99.7 3E-16 1E-20 109.8 9.4 127 68-198 17-148 (149)
50 2z62_A TOLL-like receptor 4, v 99.7 3E-16 1E-20 120.5 10.2 108 42-149 49-163 (276)
51 4ezg_A Putative uncharacterize 99.7 3.1E-16 1.1E-20 114.8 9.6 129 42-174 63-195 (197)
52 2ell_A Acidic leucine-rich nuc 99.7 5E-16 1.7E-20 110.8 10.2 132 65-200 21-157 (168)
53 2z63_A TOLL-like receptor 4, v 99.7 4.6E-16 1.6E-20 130.5 11.2 139 39-177 22-166 (570)
54 2je0_A Acidic leucine-rich nuc 99.7 1.3E-16 4.4E-21 111.7 6.5 128 41-168 13-148 (149)
55 4fmz_A Internalin; leucine ric 99.7 1.1E-15 3.7E-20 120.9 12.3 143 44-197 176-318 (347)
56 1m9s_A Internalin B; cell inva 99.6 4.8E-16 1.6E-20 131.7 10.4 143 43-198 41-183 (605)
57 3t6q_A CD180 antigen; protein- 99.6 1.2E-15 4.2E-20 129.0 12.9 149 38-193 26-180 (606)
58 3o6n_A APL1; leucine-rich repe 99.6 1.7E-15 6E-20 121.7 13.1 144 43-196 43-192 (390)
59 2id5_A Lingo-1, leucine rich r 99.6 5.6E-16 1.9E-20 127.6 10.4 157 33-196 44-206 (477)
60 1ogq_A PGIP-2, polygalacturona 99.6 1E-15 3.4E-20 119.9 11.0 144 44-196 124-274 (313)
61 2z80_A TOLL-like receptor 2, v 99.6 4E-16 1.4E-20 123.9 8.8 150 40-196 71-228 (353)
62 2o6r_A Variable lymphocyte rec 99.6 5E-15 1.7E-19 106.5 13.6 128 47-177 9-141 (177)
63 1a9n_A U2A', U2A'; complex (nu 99.6 4.5E-16 1.5E-20 112.0 8.0 134 64-201 15-151 (176)
64 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-16 5.3E-21 124.6 5.9 145 44-196 119-268 (317)
65 3v47_A TOLL-like receptor 5B a 99.6 5.8E-15 2E-19 120.7 14.6 137 45-182 275-417 (455)
66 1wwl_A Monocyte differentiatio 99.6 1.1E-15 3.8E-20 119.5 9.8 147 43-201 119-309 (312)
67 3o6n_A APL1; leucine-rich repe 99.6 3E-15 1E-19 120.3 12.5 105 44-148 68-178 (390)
68 4glp_A Monocyte differentiatio 99.6 6.5E-16 2.2E-20 120.7 8.2 146 44-201 144-307 (310)
69 3oja_B Anopheles plasmodium-re 99.6 3.4E-15 1.2E-19 126.4 12.5 104 45-148 75-184 (597)
70 2z81_A CD282 antigen, TOLL-lik 99.6 1.6E-15 5.4E-20 126.8 10.1 135 41-176 22-164 (549)
71 3oja_B Anopheles plasmodium-re 99.6 5.5E-15 1.9E-19 125.1 13.4 143 44-196 50-198 (597)
72 4g8a_A TOLL-like receptor 4; l 99.6 4.1E-15 1.4E-19 125.8 12.3 141 49-197 35-180 (635)
73 1ziw_A TOLL-like receptor 3; i 99.6 3.3E-15 1.1E-19 128.0 11.6 150 40-196 20-177 (680)
74 1dce_A Protein (RAB geranylger 99.6 4E-16 1.4E-20 131.3 5.8 125 69-196 442-566 (567)
75 1xku_A Decorin; proteoglycan, 99.6 6.7E-15 2.3E-19 115.7 12.1 126 47-175 123-255 (330)
76 1ogq_A PGIP-2, polygalacturona 99.6 5.4E-16 1.8E-20 121.4 5.7 129 45-174 50-188 (313)
77 3j0a_A TOLL-like receptor 5; m 99.6 4.2E-15 1.4E-19 130.5 11.8 143 34-177 14-165 (844)
78 2xot_A Amphoterin-induced prot 99.6 6.8E-15 2.3E-19 117.3 11.8 145 47-197 20-170 (361)
79 2ft3_A Biglycan; proteoglycan, 99.6 7.5E-15 2.6E-19 115.6 11.9 104 43-148 52-160 (332)
80 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-14 4.2E-19 121.4 13.8 127 43-176 359-489 (549)
81 3vq2_A TLR4, TOLL-like recepto 99.6 3.6E-15 1.2E-19 126.1 10.5 132 44-176 398-537 (606)
82 3v47_A TOLL-like receptor 5B a 99.6 7.5E-15 2.6E-19 120.0 11.8 135 43-177 28-171 (455)
83 1o6v_A Internalin A; bacterial 99.6 1.1E-14 3.7E-19 119.8 12.8 102 45-148 221-322 (466)
84 1o6v_A Internalin A; bacterial 99.6 1E-14 3.6E-19 119.9 12.6 141 43-196 241-381 (466)
85 3oja_A Leucine-rich immune mol 99.6 7.7E-16 2.6E-20 127.5 5.9 127 44-173 119-250 (487)
86 1xku_A Decorin; proteoglycan, 99.6 9.6E-15 3.3E-19 114.9 11.7 156 33-196 64-246 (330)
87 1ziw_A TOLL-like receptor 3; i 99.6 1.4E-14 4.8E-19 124.1 13.4 145 45-196 454-615 (680)
88 2z63_A TOLL-like receptor 4, v 99.6 7.4E-15 2.5E-19 123.2 11.2 130 46-176 374-510 (570)
89 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-15 8.8E-20 117.7 7.9 146 42-196 77-243 (317)
90 3bz5_A Internalin-J, INLJ; leu 99.6 2.5E-14 8.5E-19 117.5 13.1 119 43-170 40-158 (457)
91 4eco_A Uncharacterized protein 99.6 9.8E-15 3.3E-19 124.5 10.8 146 45-197 305-464 (636)
92 2z7x_B TOLL-like receptor 1, v 99.6 4.8E-15 1.7E-19 123.2 8.7 128 43-176 19-156 (520)
93 1wwl_A Monocyte differentiatio 99.6 3.1E-15 1.1E-19 116.9 7.1 149 43-196 93-259 (312)
94 2z7x_B TOLL-like receptor 1, v 99.6 1.4E-14 4.7E-19 120.5 11.2 133 43-176 322-484 (520)
95 3rgz_A Protein brassinosteroid 99.6 1.2E-14 4.1E-19 126.4 11.1 77 113-196 632-710 (768)
96 2wfh_A SLIT homolog 2 protein 99.6 3.3E-14 1.1E-18 103.8 11.8 109 41-149 27-140 (193)
97 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.6E-14 5.6E-19 121.3 11.4 125 44-172 51-181 (562)
98 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 3.7E-14 1.3E-18 119.2 13.3 133 43-176 351-513 (562)
99 3t6q_A CD180 antigen; protein- 99.6 4E-14 1.4E-18 119.7 13.5 136 41-176 274-441 (606)
100 3rgz_A Protein brassinosteroid 99.6 1.5E-14 5.2E-19 125.8 10.9 147 44-197 393-545 (768)
101 2ft3_A Biglycan; proteoglycan, 99.6 1.7E-14 5.8E-19 113.6 10.1 148 41-196 74-270 (332)
102 3oja_A Leucine-rich immune mol 99.6 7.3E-15 2.5E-19 121.6 8.0 147 41-196 76-243 (487)
103 4ecn_A Leucine-rich repeat pro 99.5 7.2E-14 2.5E-18 122.6 13.9 149 43-197 546-704 (876)
104 4ecn_A Leucine-rich repeat pro 99.5 9.1E-15 3.1E-19 128.2 6.9 128 43-173 446-608 (876)
105 3cvr_A Invasion plasmid antige 99.5 1.2E-13 4.2E-18 116.1 13.3 134 44-196 79-236 (571)
106 4b8c_D Glucose-repressible alc 99.5 3.1E-14 1.1E-18 123.1 9.1 114 61-176 217-332 (727)
107 4eco_A Uncharacterized protein 99.5 8.3E-14 2.8E-18 118.8 11.4 133 43-176 431-582 (636)
108 1jl5_A Outer protein YOPM; leu 99.5 2.5E-13 8.5E-18 111.5 13.3 104 44-150 90-210 (454)
109 2o6r_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 97.0 12.1 109 41-149 24-138 (177)
110 1w8a_A SLIT protein; signaling 99.5 1.8E-13 6.2E-18 99.7 10.8 109 42-150 26-141 (192)
111 3bz5_A Internalin-J, INLJ; leu 99.5 4.8E-13 1.6E-17 109.9 14.3 81 43-128 62-142 (457)
112 4glp_A Monocyte differentiatio 99.5 6.7E-14 2.3E-18 109.2 8.2 133 38-175 162-309 (310)
113 3g39_A Variable lymphocyte rec 99.5 9.8E-13 3.4E-17 94.0 13.4 105 48-176 12-118 (170)
114 2r9u_A Variable lymphocyte rec 99.5 6.3E-13 2.2E-17 95.4 11.9 99 48-148 15-118 (174)
115 1dce_A Protein (RAB geranylger 99.5 1.1E-13 3.7E-18 116.5 9.0 120 46-167 442-567 (567)
116 1jl5_A Outer protein YOPM; leu 99.5 1.1E-12 3.7E-17 107.7 14.0 121 45-174 131-251 (454)
117 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.7E-18 115.8 8.6 123 44-176 99-246 (571)
118 2ast_B S-phase kinase-associat 99.4 1.3E-14 4.3E-19 114.2 1.5 102 44-145 92-205 (336)
119 3g39_A Variable lymphocyte rec 99.4 1E-12 3.5E-17 93.9 11.0 87 41-127 26-116 (170)
120 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 93.6 11.3 106 69-177 13-122 (174)
121 3j0a_A TOLL-like receptor 5; m 99.4 7.9E-13 2.7E-17 116.1 11.8 141 48-196 7-154 (844)
122 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-12 5E-17 110.7 13.0 70 113-196 221-290 (622)
123 4b8c_D Glucose-repressible alc 99.4 6.3E-13 2.2E-17 114.9 10.2 110 40-149 219-330 (727)
124 2ca6_A RAN GTPase-activating p 99.4 1.1E-13 3.7E-18 111.1 3.6 39 43-81 92-135 (386)
125 3g06_A SSPH2 (leucine-rich rep 99.4 9.5E-13 3.2E-17 111.8 9.4 80 90-176 221-300 (622)
126 4ay9_X Follicle-stimulating ho 99.4 1E-12 3.4E-17 104.3 8.7 149 43-197 28-233 (350)
127 4ay9_X Follicle-stimulating ho 99.4 1.9E-12 6.7E-17 102.6 10.2 127 48-176 12-170 (350)
128 3goz_A Leucine-rich repeat-con 99.4 7.2E-13 2.5E-17 105.5 7.7 149 46-196 52-231 (362)
129 2ast_B S-phase kinase-associat 99.3 1.2E-12 4.1E-17 102.8 6.6 149 45-198 70-230 (336)
130 3goz_A Leucine-rich repeat-con 99.3 8E-13 2.7E-17 105.3 4.7 150 45-196 80-259 (362)
131 1ds9_A Outer arm dynein; leuci 99.3 1.6E-14 5.4E-19 105.8 -5.7 130 43-176 46-188 (198)
132 2ca6_A RAN GTPase-activating p 99.3 1.1E-12 3.9E-17 105.2 3.3 130 45-176 159-319 (386)
133 2ifg_A High affinity nerve gro 99.3 4.8E-12 1.6E-16 100.0 6.3 102 48-151 11-119 (347)
134 3sb4_A Hypothetical leucine ri 99.2 3.1E-11 1.1E-15 94.8 9.4 143 44-196 48-303 (329)
135 1z7x_W Ribonuclease inhibitor; 99.2 3.1E-12 1E-16 104.6 2.8 154 44-198 27-207 (461)
136 3sb4_A Hypothetical leucine ri 99.2 4.4E-11 1.5E-15 94.0 9.3 99 89-196 225-327 (329)
137 1z7x_W Ribonuclease inhibitor; 99.2 3.5E-12 1.2E-16 104.3 1.2 13 160-172 341-353 (461)
138 2ifg_A High affinity nerve gro 99.1 2.9E-10 1E-14 89.8 11.0 105 71-177 11-120 (347)
139 3un9_A NLR family member X1; l 99.1 2.5E-12 8.7E-17 102.9 -1.0 151 44-196 71-245 (372)
140 3rw6_A Nuclear RNA export fact 99.1 2.6E-10 8.8E-15 87.0 8.2 116 86-202 137-263 (267)
141 3un9_A NLR family member X1; l 99.0 5.2E-11 1.8E-15 95.3 0.9 134 43-176 99-255 (372)
142 3ogk_B Coronatine-insensitive 98.8 3.7E-09 1.3E-13 88.9 6.1 79 43-121 162-251 (592)
143 3ogk_B Coronatine-insensitive 98.7 1.6E-08 5.6E-13 85.0 7.5 56 43-98 190-251 (592)
144 4fdw_A Leucine rich hypothetic 98.7 4.1E-08 1.4E-12 79.2 9.4 65 34-99 169-235 (401)
145 2p1m_B Transport inhibitor res 98.7 2.2E-08 7.5E-13 84.2 5.4 80 44-123 129-221 (594)
146 4fdw_A Leucine rich hypothetic 98.6 2.4E-07 8.2E-12 74.7 9.9 120 46-172 158-283 (401)
147 2p1m_B Transport inhibitor res 98.6 9E-09 3.1E-13 86.5 0.8 147 44-196 65-241 (594)
148 1io0_A Tropomodulin; LRR prote 98.5 1.4E-08 4.8E-13 73.3 1.1 111 64-174 32-165 (185)
149 2ra8_A Uncharacterized protein 98.5 1.2E-07 4.1E-12 75.5 4.6 150 44-196 138-313 (362)
150 1io0_A Tropomodulin; LRR prote 98.4 4.5E-08 1.5E-12 70.6 1.5 107 43-149 34-165 (185)
151 2ra8_A Uncharacterized protein 98.2 5.3E-07 1.8E-11 71.7 2.9 131 43-175 170-322 (362)
152 3rw6_A Nuclear RNA export fact 98.1 1.2E-06 4.1E-11 66.7 2.8 79 88-166 168-257 (267)
153 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.4E-11 61.8 2.6 57 135-194 114-171 (176)
154 3e4g_A ATP synthase subunit S, 97.9 1.9E-06 6.6E-11 61.3 0.5 84 67-150 60-155 (176)
155 4gt6_A Cell surface protein; l 97.5 0.001 3.4E-08 53.2 10.7 104 64-171 261-368 (394)
156 4h09_A Hypothetical leucine ri 97.5 0.00085 2.9E-08 53.2 10.1 121 45-170 217-343 (379)
157 4h09_A Hypothetical leucine ri 97.5 0.0017 5.9E-08 51.4 11.7 122 64-196 213-339 (379)
158 4gt6_A Cell surface protein; l 97.4 0.0008 2.7E-08 53.7 9.0 132 33-172 253-390 (394)
159 4fs7_A Uncharacterized protein 97.3 0.00098 3.4E-08 53.2 9.0 80 86-169 293-375 (394)
160 3rfe_A Platelet glycoprotein I 97.3 0.00063 2.2E-08 45.8 6.3 52 94-147 12-67 (130)
161 4fs7_A Uncharacterized protein 97.3 0.0014 4.7E-08 52.3 9.3 121 64-196 249-372 (394)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 9.7E-05 3.3E-09 53.5 2.2 111 62-172 35-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00013 4.5E-09 52.8 1.6 105 43-147 39-169 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.0018 6.1E-08 43.6 5.9 58 117-176 12-71 (130)
165 2lz0_A Uncharacterized protein 64.0 9.1 0.00031 23.9 3.8 43 57-100 8-53 (100)
No 1
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.84 E-value=8.7e-23 Score=150.05 Aligned_cols=178 Identities=48% Similarity=0.754 Sum_probs=153.3
Q ss_pred cCc-cHHHHHhhhhhhcCCCCCCceEEEccCc--cccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCcc
Q psy14661 25 AKP-NLKDALKKWEEENGIPISEAKEVGLQMQ--FIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNN 101 (202)
Q Consensus 25 ~~~-~~~~~~~~~~~~~~~~~~~l~~L~l~~~--~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~ 101 (202)
++. ++.+.++.|........-.+....+.+. .+..+|..+..+++|+.|++++|.++.++.+..+++|++|++++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~ 81 (198)
T 1ds9_A 2 AKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL 81 (198)
T ss_dssp CCCSCHHHHHHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEE
T ss_pred cchhHHHHHHHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCC
Confidence 445 7788899998887666666788888766 3777888899999999999999999998888889999999999999
Q ss_pred ccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc---
Q psy14661 102 IKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD--- 178 (202)
Q Consensus 102 l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--- 178 (202)
++.++.....+++|+.|++++|.++++|.+..+++|+.|++++|.+++++.+..+..+++|+++++.+|++.+.++.
T Consensus 82 l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 161 (198)
T 1ds9_A 82 IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161 (198)
T ss_dssp ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTT
T ss_pred cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccc
Confidence 99888766666899999999999999887788899999999999999876656788999999999999999776543
Q ss_pred -hhhHHHHHHhCCCcccccCccCCC
Q psy14661 179 -PLYKSEVKKRLPNLKKLDGEVLPE 202 (202)
Q Consensus 179 -~~~~~~~~~~l~~L~~L~~~~~~~ 202 (202)
..++...+..+++|+.||+.+|++
T Consensus 162 ~~~~~~~~~~~l~~L~~Ld~~~i~~ 186 (198)
T 1ds9_A 162 TSEYRIEVVKRLPNLKKLDGMPVDV 186 (198)
T ss_dssp HHHHHHHHHHHCSSCSEECCGGGTT
T ss_pred hHHHHHHHHHhCCCcEEECCcccCH
Confidence 456777889999999999999875
No 2
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.7e-19 Score=134.33 Aligned_cols=161 Identities=21% Similarity=0.256 Sum_probs=132.5
Q ss_pred hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCC
Q psy14661 39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAET 114 (202)
Q Consensus 39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 114 (202)
.+...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++
T Consensus 34 ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 34 VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 334556789999999999888754 589999999999999999988 457899999999999999998874 4455689
Q ss_pred CcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc-hhhHHHHHHhCCCc
Q psy14661 115 LEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD-PLYKSEVKKRLPNL 192 (202)
Q Consensus 115 L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~~~~~~~l~~L 192 (202)
|+.|++++|.++.+| .+..+++|+.|++++|.++.++. ..+..+++|+.+++.+|++.+.++. ..++.++....+.+
T Consensus 114 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~ 192 (229)
T 3e6j_A 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIA 192 (229)
T ss_dssp CCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred hCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCcccc
Confidence 999999999999998 68889999999999999998764 5688899999999999999988742 23445555555566
Q ss_pred ccccCccC
Q psy14661 193 KKLDGEVL 200 (202)
Q Consensus 193 ~~L~~~~~ 200 (202)
..+++.++
T Consensus 193 ~~~~g~~v 200 (229)
T 3e6j_A 193 MRWDGKAV 200 (229)
T ss_dssp EEESSSEE
T ss_pred ccccCccc
Confidence 66666544
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=1.2e-18 Score=132.45 Aligned_cols=147 Identities=20% Similarity=0.274 Sum_probs=85.1
Q ss_pred CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEEL 118 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L 118 (202)
.+..++.|++++|.+..+++. +..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 344566666666666555543 66666666666666666665 33566666666666666666554 233334566666
Q ss_pred EcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 119 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
++++|.++.++. +..+++|+.|++++|.++.++. ..+..+++|++|++++|.++..++. .+..+++|+.|+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~ 185 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG------AFDRLGKLQTIT 185 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEE
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH------HHhCCCCCCEEE
Confidence 666666665542 4556666666666666665432 3455566666666666666655432 344455555544
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.1e-18 Score=130.22 Aligned_cols=133 Identities=22% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEEL 118 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L 118 (202)
.+++|+.|++++|.+..++.. +..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 344455555555555444443 34455555555555555544 23444555555555555554443 122233455555
Q ss_pred EcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 119 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
++++|.++.++. +..+++|+.|++++|.++.++. ..+..+++|++|++++|.++..+
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCC
Confidence 555555554441 4445555555555555554332 23444555555555555555444
No 5
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=4.5e-18 Score=131.96 Aligned_cols=147 Identities=23% Similarity=0.243 Sum_probs=93.1
Q ss_pred CCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661 43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 121 (202)
.+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.++....+++|++|++++|.++.++.....+++|+.|+++
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC
Confidence 44567777777777666653 37777777777777777776644456666777777777766666544444666777777
Q ss_pred cccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 122 YNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 122 ~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+|.++.++ .|..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++..++. .+..+++|++|+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~ 178 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAG------LLNGLENLDTLL 178 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTT------TTTTCTTCCEEE
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCHH------HhcCcCCCCEEE
Confidence 77666654 35666666667776666665432 3455566666666666666655532 344555555544
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=8.4e-18 Score=128.99 Aligned_cols=150 Identities=21% Similarity=0.252 Sum_probs=127.9
Q ss_pred CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..++. .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+
T Consensus 33 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 112 (270)
T 2o6q_A 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLA 112 (270)
T ss_dssp SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence 3456679999999999998886 499999999999999999988 45688999999999999999877 3445568999
Q ss_pred EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661 117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194 (202)
Q Consensus 117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 194 (202)
.|++++|.++.++ .+..+++|+.|++++|.+..++. ..+..+++|++|++++|.++..++. .+..+++|++
T Consensus 113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~ 185 (270)
T 2o6q_A 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG------AFDKLTELKT 185 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCE
T ss_pred EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChh------HhccCCCcCE
Confidence 9999999999887 37899999999999999998654 4578899999999999999988753 4567788887
Q ss_pred ccC
Q psy14661 195 LDG 197 (202)
Q Consensus 195 L~~ 197 (202)
|+-
T Consensus 186 L~L 188 (270)
T 2o6q_A 186 LKL 188 (270)
T ss_dssp EEC
T ss_pred EEC
Confidence 763
No 7
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=9.9e-18 Score=125.01 Aligned_cols=136 Identities=18% Similarity=0.258 Sum_probs=119.9
Q ss_pred CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus 28 ~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 28 TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp SSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCC
Confidence 3445689999999999999887 489999999999999999988 679999999999999999998884 445568999
Q ss_pred EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.|++++|.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+++++.+|++.+.+.
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGG
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999999999875 58899999999999999998754 568889999999999999988764
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.8e-17 Score=125.85 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=123.2
Q ss_pred HhhhhhhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-c
Q psy14661 33 LKKWEEENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-L 108 (202)
Q Consensus 33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~ 108 (202)
+..+.+.....+++|+.|++++|.+..+++. +..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .
T Consensus 47 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 126 (251)
T 3m19_A 47 LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV 126 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence 4444444456778999999999998887765 89999999999999999988 567899999999999999998774 3
Q ss_pred ccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 109 EPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 109 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+++++.+|++.+.+
T Consensus 127 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 127 FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTTS
T ss_pred hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCCc
Confidence 455689999999999999987 38899999999999999998654 56788999999999999998874
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.1e-17 Score=128.42 Aligned_cols=146 Identities=23% Similarity=0.240 Sum_probs=109.8
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELW 119 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~ 119 (202)
.+++++.|++++|.+..++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.++. .+..+++|+.|+
T Consensus 61 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 4667888888888877765 477888888888888888877 346778888888888888877663 344457888888
Q ss_pred cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+++|.++.++. +..+++|+.|++++|.+++++. ..+..+++|++|++++|.++..++. .+..+++|+.|+
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~ 211 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLTSLQYIW 211 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEE
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHH------HHhCCcCCCEEE
Confidence 88888887763 6778888888888888877543 4567788888888888888877643 456677777765
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=3.3e-18 Score=144.74 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=124.6
Q ss_pred hhhhhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cccc
Q psy14661 35 KWEEENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEP 110 (202)
Q Consensus 35 ~~~~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~ 110 (202)
+..+++...|.+++.|+|++|.+..+++. |..+++|++|++++|.|+.+ ..|..+++|++|++++|+++.++ ..+.
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 34444455667899999999999999864 99999999999999999998 56999999999999999999887 4455
Q ss_pred ccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 111 LAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 111 ~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.+++|++|++++|.++.++ .++.+++|+.|++++|.+..++.+..+..+++|++|++++|.++...+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 5689999999999999987 489999999999999999876655678889999999999999988764
No 11
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=6.9e-18 Score=129.17 Aligned_cols=140 Identities=26% Similarity=0.373 Sum_probs=101.3
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+.+++.|++++|.+..++ .+..+++|+.|++++|.+++++.+..+++|++|++++|.++.++.... ++|+.|++++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence 3556788888888877777 477788888888888888877447777888888888888777665444 5777777877
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
|.+++++.+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+++.. .+..+++|+.|+
T Consensus 116 N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~--------~l~~l~~L~~L~ 178 (263)
T 1xeu_A 116 NELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG--------GLTRLKKVNWID 178 (263)
T ss_dssp SCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT--------TSTTCCCCCEEE
T ss_pred CccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH--------HhccCCCCCEEe
Confidence 77777766777777777777777777653 4566777777777777776662 345566666554
No 12
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.2e-17 Score=129.58 Aligned_cols=141 Identities=27% Similarity=0.340 Sum_probs=105.9
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+++++.|++++|.+..+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+.. +++|+.|++++
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~-l~~L~~L~l~~ 143 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH-LPQLESLYLGN 143 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGG-CTTCCEEECCS
T ss_pred cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcC-CCCCCEEEccC
Confidence 35678888888888777776 77788888888888888777667777888888888888777654333 47788888888
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
|.++.++.+..+++|+.|++++|.+++++. +..+++|++|++++|.+++.+ .+..+++|+.|+
T Consensus 144 n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~--------~l~~l~~L~~L~ 206 (291)
T 1h6t_A 144 NKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLE 206 (291)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEE
T ss_pred CcCCcchhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh--------hhccCCCCCEEE
Confidence 888777667777888888888888777543 677788888888888887764 346677777665
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.2e-17 Score=127.50 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCCCCceEEEccCcc-ccccc-hhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 42 IPISEAKEVGLQMQF-IEKMD-SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~-i~~l~-~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
..+++|+.|++++|. ++.++ ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. .+..+++|+
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 344555666666654 55553 3355566666666666666555 345556666666666666665542 233346666
Q ss_pred EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661 117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194 (202)
Q Consensus 117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 194 (202)
.|++++|.++.++ .+..+++|+.|++++|.++++. +..+..+++|+.|++++|.++..++. .+..+++|+.
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~ 229 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTE------ALAPLRALQY 229 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHH------HHTTCTTCCE
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcCCHH------HcccCcccCE
Confidence 6666666666655 2566667777777777666542 24566677777777777777766522 4566777776
Q ss_pred cc
Q psy14661 195 LD 196 (202)
Q Consensus 195 L~ 196 (202)
|+
T Consensus 230 L~ 231 (285)
T 1ozn_A 230 LR 231 (285)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3.2e-17 Score=125.92 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=127.9
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEcc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVS 121 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~ 121 (202)
++.+++.|++.+|.+..++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 45679999999999888776 88999999999999999998888899999999999999998774 34556899999999
Q ss_pred cccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 122 YNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 122 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
+|.++.++. +..+++|+.|++++|.+++++. ..+..+++|+.|++++|.++..++. .+..+++|++|+-
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L 188 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG------VFDKLTQLKDLRL 188 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEEC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH------HhcCCccCCEEEC
Confidence 999998873 7899999999999999998654 4578899999999999999988753 5678899998774
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=2.8e-17 Score=126.87 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=88.6
Q ss_pred CCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCC-CcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCc
Q psy14661 42 IPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNM-IEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLE 116 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~-i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~ 116 (202)
..+++++.|++++|.+..+ +..+..+++|+.|++++|. ++.+ ..+..+++|++|++++|.++.++ .....+++|+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 3445566666666665555 2335566666666666664 5554 44556666666666666665543 3333346666
Q ss_pred EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661 117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194 (202)
Q Consensus 117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 194 (202)
.|++++|.++.++ .+..+++|+.|++++|.+++++. ..+..+++|++|++++|.++...+. .+..+++|+.
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~ 205 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPH------AFRDLGRLMT 205 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT------TTTTCTTCCE
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCHh------HccCcccccE
Confidence 6666666666655 25666677777777776665432 3456667777777777776665433 4556677766
Q ss_pred cc
Q psy14661 195 LD 196 (202)
Q Consensus 195 L~ 196 (202)
|+
T Consensus 206 L~ 207 (285)
T 1ozn_A 206 LY 207 (285)
T ss_dssp EE
T ss_pred ee
Confidence 65
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.8e-16 Score=116.93 Aligned_cols=136 Identities=18% Similarity=0.205 Sum_probs=118.0
Q ss_pred CCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..++.. +..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 24 TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 34566899999999999888876 78999999999999999988 457889999999999999998774 345568999
Q ss_pred EEEcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 117 ELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 117 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.|++++|.++.++. +..+++|+.|++++|.+++++. ..+..+++|+++++.+|++.+..+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCTT
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecCCC
Confidence 99999999998873 7889999999999999998654 457889999999999999988764
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=3.4e-17 Score=128.00 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=87.3
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+++++.|++++|.+..+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+ ..+++|+.|++++
T Consensus 61 ~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l-~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDL 138 (308)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECCS
T ss_pred ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchhh-cCCCCCCEEECCC
Confidence 35567777777777666666 666777777777777766665566666677777766666665542 2335666666666
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
|.++.++.+..+++|+.|++++|.+++++. +..+++|+.|++++|.++... .+..+++|++|+
T Consensus 139 n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~ 201 (308)
T 1h6u_A 139 NQITNISPLAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS--------PLASLPNLIEVH 201 (308)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG--------GGGGCTTCCEEE
T ss_pred CccCcCccccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh--------hhcCCCCCCEEE
Confidence 666665555566666666666666665432 555666666666666665543 134455555544
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=6.5e-17 Score=120.55 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=118.1
Q ss_pred CCCCCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCC
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETL 115 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L 115 (202)
...+..++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|
T Consensus 28 ~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 28 EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107 (220)
T ss_dssp SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence 3345678999999999988854 388999999999999999998 47999999999999999999877 345556899
Q ss_pred cEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 116 EELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 116 ~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
+.|++++|.++.++ .+..+++|+.|++++|.++++. +..+..+++|+.+++++|++.+.++
T Consensus 108 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 108 KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99999999999874 5889999999999999999863 3578899999999999999998864
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=2.7e-17 Score=123.36 Aligned_cols=144 Identities=22% Similarity=0.209 Sum_probs=124.5
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW 119 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~ 119 (202)
..++.+.++.+++.++.+|..+. ++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|+
T Consensus 17 ~~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp CEEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CEEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 45567889999999999998554 8999999999999998 66889999999999999999887 3445568999999
Q ss_pred cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+++|.++.++. +..+++|+.|++++|.++.++. .+..+++|++|++++|.+...++. .+..+++|+.|+
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~ 165 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG------AFDRLSSLTHAY 165 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT------TTTTCTTCCEEE
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH------HHhCCCCCCEEE
Confidence 99999999873 7899999999999999998764 678899999999999999988753 567788898765
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5e-17 Score=121.20 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=121.8
Q ss_pred ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccc
Q psy14661 47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYN 123 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n 123 (202)
-+.++++++++..+|..+. ++++.|++++|.++.+ ..|..+++|++|++++|.++.+. ..+..+++|+.|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3578999999999998654 7999999999999998 47899999999999999999764 55555689999999999
Q ss_pred cCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 124 YIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 124 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.++.+|. |..+++|+.|++++|.++.++. ..+..+++|++|++++|.++...+. .+..+++|+.|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~ 158 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG------TFSPLRAIQTMH 158 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH------HHhCCCCCCEEE
Confidence 9999883 7899999999999999998643 5788999999999999999998754 567788888765
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-17 Score=122.16 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=122.2
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccc-cCCcccccCCCcEEEcc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEELWVS 121 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~l~ 121 (202)
.+++++.|++++|.+..+| .+..+++|+.|++++|.++.++.+..+++|++|++++|.++. .+.....+++|+.|+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3557999999999999988 599999999999999988888888899999999999999986 34445556899999999
Q ss_pred cccCCC-CC-CCCCCCCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 122 YNYIEK-TK-GIGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 122 ~n~l~~-~~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+|.+++ .+ .+..+++|+.|++++|. +.+++ .+..+++|++|++++|.+++.. .+..+++|++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~--------~l~~l~~L~~L~ 187 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR--------GIEDFPKLNQLY 187 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT--------TGGGCSSCCEEE
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH--------HhccCCCCCEEE
Confidence 999987 33 57889999999999998 87764 5788999999999999998875 457889999876
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=2e-17 Score=130.44 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=69.5
Q ss_pred CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCcccc-ccCCccc---------cc
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIK-SFAGLEP---------LA 112 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~---------~~ 112 (202)
+++|+.|++++|.+..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|++. .+|.... .+
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 5567777777777777777777777777777777777755 45566666666666664332 3332211 13
Q ss_pred CCCcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661 113 ETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 113 ~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 172 (202)
++|+.|++++|.++.+| .++.+++|+.|++++|.+++++. .+..+++|++|++++|.+
T Consensus 183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECTTCTT
T ss_pred CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECcCCcc
Confidence 45555555555555444 24444444444444444444322 233344444444444333
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=2.1e-16 Score=122.60 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=97.9
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW 119 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~ 119 (202)
.+++++.|++++|.+..+|..+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 45667777777777777777677777888888888888776 45777788888888888877766 3344457788888
Q ss_pred cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
+++|.++.+|. +..+++|+.|++++|.++.++. .+....+|+.+++.+|++.+.+
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~--~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh--hhcccccCCeEEeCCCCccCcC
Confidence 88888887762 5677888888888888877654 5666677888888888887765
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=6.3e-17 Score=126.50 Aligned_cols=143 Identities=21% Similarity=0.282 Sum_probs=119.0
Q ss_pred CCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 120 (202)
...+++|+.|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+. .+++|+.|++
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~l 158 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLA-GLTNLQYLSI 158 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGG-GCTTCCEEEC
T ss_pred HccCCCCCEEEccCCcCCCchh-hcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcccc-CCCCccEEEc
Confidence 3467789999999999888764 8889999999999999998866888999999999999998876633 4478999999
Q ss_pred ccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 121 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
++|.+++++.+..+++|+.|++++|.+++++. +..+++|++|++++|.+++.. .+..+++|+.|+
T Consensus 159 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~ 223 (308)
T 1h6u_A 159 GNAQVSDLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--------PLANTSNLFIVT 223 (308)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--------GGTTCTTCCEEE
T ss_pred cCCcCCCChhhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--------cccCCCCCCEEE
Confidence 99999888778888899999999998887653 677888999999999888775 246678887765
No 25
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=3.8e-17 Score=125.55 Aligned_cols=137 Identities=22% Similarity=0.238 Sum_probs=117.6
Q ss_pred CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..++. .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++ ..+..+++|+
T Consensus 24 ~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 3345679999999999988887 589999999999999999987 46889999999999999998766 4455568999
Q ss_pred EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.|++++|.++.++ .+..+++|+.|++++|.+.+++.+..+..+++|++|++++|.++...+
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 9999999999876 478899999999999999875444578889999999999999988763
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.7e-17 Score=130.77 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=114.9
Q ss_pred CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
..+++.|++++|.+..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.....+++|+.|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4678889999988888888888888999999999988876 668888889999999998888776566668899999988
Q ss_pred ccCC-CCC-CCC---------CCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCC
Q psy14661 123 NYIE-KTK-GIG---------VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN 191 (202)
Q Consensus 123 n~l~-~~~-~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~ 191 (202)
|.+. .+| .+. .+++|+.|++++|.++.++. .++.+++|++|++++|.++..++ .+..+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~-------~l~~l~~ 230 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP-------AIHHLPK 230 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG-------GGGGCTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch-------hhccCCC
Confidence 6654 455 233 38889999999988886654 67888889999999998887652 3567788
Q ss_pred cccccCc
Q psy14661 192 LKKLDGE 198 (202)
Q Consensus 192 L~~L~~~ 198 (202)
|++|+-+
T Consensus 231 L~~L~Ls 237 (328)
T 4fcg_A 231 LEELDLR 237 (328)
T ss_dssp CCEEECT
T ss_pred CCEEECc
Confidence 8777643
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=132.60 Aligned_cols=110 Identities=22% Similarity=0.197 Sum_probs=61.4
Q ss_pred cCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC---------
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--------- 107 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~--------- 107 (202)
....+++|+.|++++|.+..++. .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++.
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 34456667777777776666553 366666666777666666665 345566666666666665554331
Q ss_pred -----------------cccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccC
Q psy14661 108 -----------------LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKE 149 (202)
Q Consensus 108 -----------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~ 149 (202)
.+..+++|+.|++++|.++.+|.+..+++|+.|++++|.+++
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence 112234455555555555555444445555555555555444
No 28
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.7e-17 Score=117.40 Aligned_cols=136 Identities=24% Similarity=0.140 Sum_probs=109.4
Q ss_pred CCCCCCceEEEccCcccc--ccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccc-cCCcccccCCCcE
Q psy14661 41 GIPISEAKEVGLQMQFIE--KMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEE 117 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~--~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~ 117 (202)
...+++++.|++++|.+. .+|..+..+++|+.|++++|.++.+..+..+++|++|++++|.++. ++.....+++|+.
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 445678999999999987 8888788899999999999998888778888899999999998887 5555554578889
Q ss_pred EEcccccCCCCC---CCCCCCCccEEEccCCcccCccc--cccCCCCCcceEEEecCCcCCCCC
Q psy14661 118 LWVSYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 118 L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
|++++|.++.++ .+..+++|+.|++++|.+++++. ...+..+++|+++++.+|.+...+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999988888864 46778888888888888887543 135677888888888888877665
No 29
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.6e-17 Score=125.99 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=125.0
Q ss_pred CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661 42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 121 (202)
..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.++.+.. ++|++|++++|.++.++.+. .+++|+.|+++
T Consensus 60 ~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~-~l~~L~~L~Ls 136 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDSLI-HLKNLEILSIR 136 (263)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGGGT-TCTTCCEEECT
T ss_pred hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChhhc-CcccccEEECC
Confidence 357789999999999999988 9999999999999999999855555 89999999999999877544 44899999999
Q ss_pred cccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccCC
Q psy14661 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP 201 (202)
Q Consensus 122 ~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 201 (202)
+|.+++++.+..+++|+.|++++|.++++ ..+..+++|+.+++++|+++..+. .+.. .+...+.++.+|+..++
T Consensus 137 ~N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~~--~~~~-~l~~~~~l~~l~~~~i~ 210 (263)
T 1xeu_A 137 NNKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEPV--KYQP-ELYITNTVKDPDGRWIS 210 (263)
T ss_dssp TSCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCCE--ECCS-EEEEECCCBCTTSCBCC
T ss_pred CCcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCcc--cccc-ceEECCeeecCCCCCcC
Confidence 99999998888999999999999999986 468899999999999999987752 1111 11224566777766553
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=8.3e-17 Score=131.95 Aligned_cols=137 Identities=20% Similarity=0.127 Sum_probs=78.2
Q ss_pred hhcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-c-----
Q psy14661 38 EENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-L----- 108 (202)
Q Consensus 38 ~~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~----- 108 (202)
+.....+++|+.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 171 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC
Confidence 3344556677777777777666653 366777777777777777766 346666677777777666654431 1
Q ss_pred --------------------ccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEec
Q psy14661 109 --------------------EPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168 (202)
Q Consensus 109 --------------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~ 168 (202)
+..+++|+.|++++|.++.+|.+..+++|+.|++++|.++++.. ..+..+++|+.|++.
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVM 250 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECT
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc-ccccCccCCCEEEeC
Confidence 22234555566666665555555555556666666655554321 234444444444444
Q ss_pred CCcCCCC
Q psy14661 169 GNPLVEG 175 (202)
Q Consensus 169 ~n~~~~~ 175 (202)
+|.+...
T Consensus 251 ~n~l~~~ 257 (452)
T 3zyi_A 251 NSQVSLI 257 (452)
T ss_dssp TSCCCEE
T ss_pred CCcCceE
Confidence 4444433
No 31
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=1.1e-16 Score=135.56 Aligned_cols=142 Identities=27% Similarity=0.325 Sum_probs=118.8
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+++|+.|+|++|.+..+++ +..+++|+.|++++|.++.++.+..+++|++|++++|.++.++.+.. +++|+.|++++
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~-l~~L~~L~Ls~ 140 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDINGLVH-LPQLESLYLGN 140 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGGGGG-CTTCSEEECCS
T ss_pred cCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCccccC-CCccCEEECCC
Confidence 46779999999999888887 88899999999999999888888889999999999999888765444 48899999999
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
|.++.++.+..+++|+.|++++|.+.++.. +..+++|+.|++++|.+++.+ .+..+++|+.|+-
T Consensus 141 N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~--------~l~~l~~L~~L~L 204 (605)
T 1m9s_A 141 NKITDITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR--------ALAGLKNLDVLEL 204 (605)
T ss_dssp SCCCCCGGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG--------GGTTCTTCSEEEC
T ss_pred CccCCchhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh--------HHccCCCCCEEEc
Confidence 999888778888999999999998887543 778889999999999888764 4577888887663
No 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.3e-16 Score=127.35 Aligned_cols=145 Identities=23% Similarity=0.251 Sum_probs=118.8
Q ss_pred cCCCCCCceEEEccCccccccchh-hc-cCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCC
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDSS-LA-VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAET 114 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~~-l~-~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 114 (202)
+...+..++.|+|++|.+..++.. +. .+++|+.|++++|.|+.+ ..|..+++|++|++++|.++.++. .+..+++
T Consensus 34 P~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 113 (361)
T 2xot_A 34 PQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA 113 (361)
T ss_dssp CSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence 334556789999999999988876 65 899999999999999988 568999999999999999988763 4555689
Q ss_pred CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccC---CCCCcceEEEecCCcCCCCCCchhhHHHHHHhC
Q psy14661 115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKL---GECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL 189 (202)
Q Consensus 115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l 189 (202)
|+.|++++|.++.++ .|..+++|+.|++++|.++.++. ..+ ..+++|+.|++++|.++..++. .+..+
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l 186 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT------DLQKL 186 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH------HHHHS
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH------Hhhhc
Confidence 999999999999874 58899999999999999998764 333 5689999999999999987632 45556
Q ss_pred CC
Q psy14661 190 PN 191 (202)
Q Consensus 190 ~~ 191 (202)
+.
T Consensus 187 ~~ 188 (361)
T 2xot_A 187 PA 188 (361)
T ss_dssp CH
T ss_pred cH
Confidence 65
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=130.80 Aligned_cols=151 Identities=20% Similarity=0.153 Sum_probs=120.1
Q ss_pred hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCC
Q psy14661 39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAET 114 (202)
Q Consensus 39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 114 (202)
.+...+..++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++
T Consensus 26 ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 334456778999999999888764 488899999999999999887 678889999999999999888773 4455688
Q ss_pred CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCc
Q psy14661 115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192 (202)
Q Consensus 115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L 192 (202)
|+.|++++|.++.++ .+..+++|+.|++++|.+..+.. ..+..+++|+.|++.+|.++..++. .+..+++|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~------~l~~l~~L 178 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE------ALSHLHGL 178 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH------HHTTCTTC
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh------HhcccCCC
Confidence 999999999988764 47888899999999998877543 5678888899999998888877632 56667777
Q ss_pred cccc
Q psy14661 193 KKLD 196 (202)
Q Consensus 193 ~~L~ 196 (202)
+.|+
T Consensus 179 ~~L~ 182 (477)
T 2id5_A 179 IVLR 182 (477)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 7665
No 34
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=130.16 Aligned_cols=149 Identities=22% Similarity=0.299 Sum_probs=97.5
Q ss_pred cCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc---------------------------cCCCCCCC
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI---------------------------NGLSGLKK 91 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~---------------------------~~~~~l~~ 91 (202)
....+++|+.|++++|.+..++.. +..+++|+.|++++|.++.+ ..|..+++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 186 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc
Confidence 334455556666665555555543 55555555555555544332 23566777
Q ss_pred CcEEEccCccccccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecC
Q psy14661 92 LKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169 (202)
Q Consensus 92 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~ 169 (202)
|++|++++|.++.++.+... ++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++
T Consensus 187 L~~L~L~~n~l~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 187 LRYLNLAMCNLREIPNLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCSSCCCCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTT
T ss_pred cCeecCCCCcCccccccCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCC
Confidence 88888888888777754443 78888888888887763 47777888888888887777543 5667777788888888
Q ss_pred CcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 170 n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
|.++..++. .+..+++|+.|+
T Consensus 265 N~l~~~~~~------~~~~l~~L~~L~ 285 (440)
T 3zyj_A 265 NNLTLLPHD------LFTPLHHLERIH 285 (440)
T ss_dssp SCCCCCCTT------TTSSCTTCCEEE
T ss_pred CCCCccChh------HhccccCCCEEE
Confidence 877776643 455666666654
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=6.3e-17 Score=128.57 Aligned_cols=135 Identities=19% Similarity=0.138 Sum_probs=101.3
Q ss_pred CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..++. .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus 48 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred ccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 3345578899999998888877 488888999999998888887 458888888888888888887763 244457888
Q ss_pred EEEcccccCCCCCC---CCCCCCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 117 ELWVSYNYIEKTKG---IGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 117 ~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.|++++|.++.++. +..+++|+.|++++|. +..++ ...+..+++|+++++++|.+....
T Consensus 128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEEC
T ss_pred EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccC
Confidence 88888888887764 6778888888888873 55542 245666777777777777666554
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.3e-16 Score=123.73 Aligned_cols=141 Identities=24% Similarity=0.308 Sum_probs=124.7
Q ss_pred CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN 123 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 123 (202)
+.+++.|++++|.+..++. +..+++|+.|++++|.++.+..+..+++|++|++++|.++.++.+.. +++|+.|++++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~L~~n 122 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKD-LKKLKSLSLEHN 122 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTT-CTTCCEEECTTS
T ss_pred cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhcc-CCCCCEEECCCC
Confidence 5569999999999998876 88999999999999999999559999999999999999998776444 489999999999
Q ss_pred cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
.++.++.+..+++|+.|++++|.+++++ .+..+++|++|++++|.++... .+..+++|++|+-
T Consensus 123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~L 185 (291)
T 1h6t_A 123 GISDINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQNLYL 185 (291)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEEC
T ss_pred cCCCChhhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccch--------hhcCCCccCEEEC
Confidence 9999888889999999999999999863 5788999999999999998875 2577899988763
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.7e-16 Score=118.23 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=120.6
Q ss_pred ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEccc
Q psy14661 47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSY 122 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~ 122 (202)
-+.+++++|.++.+|..+ ...++.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+.|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 458999999999998855 34678999999999987 337899999999999999998773 555568999999999
Q ss_pred ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
|.++.++ .+..+++|+.|++++|.++.+.. ..+..+++|++|++++|.++...+. .+..+++|+.|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~ 159 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG------AFDTLHSLSTLN 159 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT------TTTTCTTCCEEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH------HhcCCCCCCEEE
Confidence 9999987 38899999999999999998643 5788999999999999999998754 567788888776
No 38
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=1.7e-16 Score=123.57 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=56.9
Q ss_pred CCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEc
Q psy14661 45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV 120 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l 120 (202)
++++.|++++|.+..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++... .....+++|+.|++
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 344444444444444444444455555555555544443 13444444555555444443222 22222244444444
Q ss_pred ccccCCC--CC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCC
Q psy14661 121 SYNYIEK--TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175 (202)
Q Consensus 121 ~~n~l~~--~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 175 (202)
++|.+++ +| .+..+++|+.|++++|.+++++ +..+..+++|+.|++++|.++..
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCcc
Confidence 4444433 22 2344444444444444444331 12334444444444444444443
No 39
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.69 E-value=1e-16 Score=115.34 Aligned_cols=131 Identities=22% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEc
Q psy14661 42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWV 120 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l 120 (202)
.++.+++.|++++|.+..++......++|+.|++++|.++.+..+..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 346667777777777666654233333777777777776666666666666666666666665552 2233455666666
Q ss_pred ccccCCCCCC---CCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEecCCcC
Q psy14661 121 SYNYIEKTKG---IGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 121 ~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l~~n~~ 172 (202)
++|.++.+|. +..+++|+.|++++|.+..++.. ..+..+++|+.++++.|..
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 6666555442 44455555555555555443320 0234455555555555543
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=7.3e-16 Score=113.63 Aligned_cols=142 Identities=21% Similarity=0.204 Sum_probs=119.4
Q ss_pred ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEcccc
Q psy14661 47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSYN 123 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n 123 (202)
-+.++.+++++..+|..+ .++++.|++++|.++.+ ..+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356788888888888654 46999999999999988 457899999999999999998774 4455689999999999
Q ss_pred cCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 124 YIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 124 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
.++.++. +..+++|+.|++++|.++.++. ..+..+++|++|++++|.++..++. .+..+++|++|+-
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~------~~~~l~~L~~L~l 155 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG------VFDRLTSLQYIWL 155 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEEC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH------HhccCCCccEEEe
Confidence 9998873 7899999999999999998654 4578899999999999999987743 5677888887763
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.9e-16 Score=122.24 Aligned_cols=133 Identities=20% Similarity=0.204 Sum_probs=70.8
Q ss_pred CCCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc--cCCcccccCCCc
Q psy14661 43 PISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLE 116 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~ 116 (202)
.+++|+.|++++|.+..++. .+..+++|+.|++++|.++.. ..+..+++|++|++++|.++. .+.....+++|+
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 35556666666666555553 355566666666666665544 345555556666666555543 333333345555
Q ss_pred EEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 117 ELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 117 ~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.|++++|.++.++ .+..+++|+.|++++|.+++++. ..+..+++|++|++++|.+....
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCS
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccC
Confidence 5555555555442 34455555555555555554332 23444555555555555554443
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=3e-16 Score=124.14 Aligned_cols=123 Identities=21% Similarity=0.298 Sum_probs=66.2
Q ss_pred hccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEcc
Q psy14661 64 LAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMS 143 (202)
Q Consensus 64 l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~ 143 (202)
+..+++|+.|++++|.++....+..+++|++|++++|.++.++.+. .+++|+.|++++|.+++++.+..+++|+.|+++
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVK-DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLN 295 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHh-cCCCcCEEEccCCccCCChhhcCCCCCCEEECc
Confidence 4444555555555555555433555555555555555555443222 225566666666655555555555566666666
Q ss_pred CCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 144 NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 144 ~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+|.+.+.. +..+..+++|+++++++|++++.. .+..+++|+.|+
T Consensus 296 ~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~--------~~~~l~~L~~L~ 339 (347)
T 4fmz_A 296 NNQLGNED-MEVIGGLTNLTTLFLSQNHITDIR--------PLASLSKMDSAD 339 (347)
T ss_dssp SSCCCGGG-HHHHHTCTTCSEEECCSSSCCCCG--------GGGGCTTCSEES
T ss_pred CCcCCCcC-hhHhhccccCCEEEccCCcccccc--------Chhhhhccceee
Confidence 66555432 234555666666666666665554 134566666554
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=4.3e-16 Score=127.69 Aligned_cols=148 Identities=26% Similarity=0.282 Sum_probs=107.2
Q ss_pred cCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCC
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETL 115 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L 115 (202)
+...+++++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|
T Consensus 70 P~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 70 PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp CSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 34456789999999999888865 499999999999999999988 67899999999999999999877 345556899
Q ss_pred cEEEcccccCCCCC--CCCCCCCccEEEccC-------------------------CcccCccccccCCCCCcceEEEec
Q psy14661 116 EELWVSYNYIEKTK--GIGVMRKLKVLYMSN-------------------------NLVKEWAEFVKLGECPSLIDLVFC 168 (202)
Q Consensus 116 ~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~-------------------------n~l~~~~~~~~~~~l~~L~~l~l~ 168 (202)
+.|++++|.++.++ .+..+++|+.|++++ |.+++++ .+..+++|+.|+++
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMS 226 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECT
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc---cccccccccEEECc
Confidence 99999999988765 255555555555554 4444332 24445555555555
Q ss_pred CCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 169 ~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+|.+....+. .+..+++|+.|+
T Consensus 227 ~N~l~~~~~~------~~~~l~~L~~L~ 248 (452)
T 3zyi_A 227 GNHFPEIRPG------SFHGLSSLKKLW 248 (452)
T ss_dssp TSCCSEECGG------GGTTCTTCCEEE
T ss_pred CCcCcccCcc------cccCccCCCEEE
Confidence 5555555432 345566666554
No 44
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.1e-16 Score=120.63 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=66.9
Q ss_pred CCCceEEEccCcc-ccccch-hhccCCCCCEEECCC-CCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCc--
Q psy14661 44 ISEAKEVGLQMQF-IEKMDS-SLAVLTNCEKLSLST-NMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE-- 116 (202)
Q Consensus 44 ~~~l~~L~l~~~~-i~~l~~-~l~~l~~L~~L~l~~-n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~-- 116 (202)
+++++.|++++|. ++.+++ .+..+++|+.|++++ |.++.+ ..|..+++|++|++++|.++.++. ...+++|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSE
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccc
Confidence 4444444444443 444443 244444444444444 444444 233444444444444444444443 12223343
Q ss_pred -EEEcccc-cCCCCC--CCCCCCCcc-EEEccCCcccCccccccCCCCCcceEEEecCCc-CCCCCCchhhHHHHHHhC-
Q psy14661 117 -ELWVSYN-YIEKTK--GIGVMRKLK-VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP-LVEGMDDPLYKSEVKKRL- 189 (202)
Q Consensus 117 -~L~l~~n-~l~~~~--~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~~~~~~~l- 189 (202)
.|++++| .++.++ .+..+++|+ .+++++|.++.++. ..+.. ++|+.+++++|+ ++..++. .+..+
T Consensus 133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~~~------~~~~l~ 204 (239)
T 2xwt_C 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVIDKD------AFGGVY 204 (239)
T ss_dssp EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEECTT------TTTTCS
T ss_pred cEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCCHH------Hhhccc
Confidence 5555555 444443 245555555 55555555554432 12222 556666666663 5544422 34445
Q ss_pred CCccccc
Q psy14661 190 PNLKKLD 196 (202)
Q Consensus 190 ~~L~~L~ 196 (202)
++|+.|+
T Consensus 205 ~~L~~L~ 211 (239)
T 2xwt_C 205 SGPSLLD 211 (239)
T ss_dssp BCCSEEE
T ss_pred cCCcEEE
Confidence 5565554
No 45
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=9.6e-16 Score=112.00 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=108.4
Q ss_pred eEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccC
Q psy14661 48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYI 125 (202)
Q Consensus 48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l 125 (202)
+.++++++.+..+|..+ .++++.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56889999998888754 36899999999999988 78888999999999999998877 3455568999999999999
Q ss_pred CCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc
Q psy14661 126 EKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178 (202)
Q Consensus 126 ~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 178 (202)
+.++ .|..+++|+.|++++|.++.++. ..+..+++|+.+++.+|++.+.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence 9876 48889999999999999988654 4678899999999999999887643
No 46
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=1e-16 Score=120.71 Aligned_cols=133 Identities=11% Similarity=0.122 Sum_probs=91.2
Q ss_pred CCCCceEEEccCccccccch-hhccCCCCCEEECCCCC-CcCc--cCCCCCCCCcEEEccC-ccccccC-CcccccCCCc
Q psy14661 43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNM-IEKI--NGLSGLKKLKVLSLAR-NNIKSFA-GLEPLAETLE 116 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~-i~~~--~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~~~L~ 116 (202)
.+.+++.|++++|.+..+++ .+..+++|+.|++++|. ++.+ ..|..+++|++|++++ |.++.++ ..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34467777777777777766 36777777777777775 7666 3566777777777776 7777665 3344456777
Q ss_pred EEEcccccCCCCCCCCCCCCcc---EEEccCC-cccCccccccCCCCCcce-EEEecCCcCCCCC
Q psy14661 117 ELWVSYNYIEKTKGIGVMRKLK---VLYMSNN-LVKEWAEFVKLGECPSLI-DLVFCGNPLVEGM 176 (202)
Q Consensus 117 ~L~l~~n~l~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~ 176 (202)
.|++++|.++.+|.+..+++|+ .|++++| .++.++. ..+..+++|+ ++++++|.++..+
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccC
Confidence 7777777777777666666666 7777777 6766543 3466677777 7777777776554
No 47
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=9.3e-16 Score=111.92 Aligned_cols=129 Identities=19% Similarity=0.184 Sum_probs=110.4
Q ss_pred ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-c--CCCCCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661 47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-N--GLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY 122 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~--~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~ 122 (202)
.+.+++++++++.+|..+. .+++.|++++|.++.+ . .+..+++|++|++++|.++.+. ..+..+++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4679999999999998654 3999999999999988 3 3889999999999999999874 5555568999999999
Q ss_pred ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCc
Q psy14661 123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178 (202)
Q Consensus 123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 178 (202)
|.++.++ .+..+++|+.|++++|.++++. +..+..+++|+++++++|++.+.++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999876 3888999999999999998853 35788899999999999999988643
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.67 E-value=3.1e-16 Score=132.65 Aligned_cols=139 Identities=23% Similarity=0.228 Sum_probs=120.7
Q ss_pred hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcccccc-CCcccccCC
Q psy14661 39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF-AGLEPLAET 114 (202)
Q Consensus 39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~ 114 (202)
.+...+.+++.|++++|.+..+++ .+..+++|++|++++|.++.+ ..|..+++|++|++++|.++.+ +..+..+++
T Consensus 26 ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 26 VPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 334456789999999999988887 599999999999999999988 5689999999999999999887 456666789
Q ss_pred CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
|++|++++|.++.++ .++.+++|++|++++|.+.+...+..++.+++|++|++++|.++...+
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 999999999999876 588999999999999999875445678999999999999999988764
No 49
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=3e-16 Score=109.79 Aligned_cols=127 Identities=23% Similarity=0.243 Sum_probs=78.1
Q ss_pred CCCCEEECCCCCCc--Cc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCC-CCC-CCCCCCccEEEc
Q psy14661 68 TNCEKLSLSTNMIE--KI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEK-TKG-IGVMRKLKVLYM 142 (202)
Q Consensus 68 ~~L~~L~l~~n~i~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l 142 (202)
++++.|++++|.++ .+ ..+..+++|++|++++|.++.+ .....+++|+.|++++|.+++ +|. +..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34444444444444 22 3334445555555555555444 222223556666666666655 442 445677888888
Q ss_pred cCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCc
Q psy14661 143 SNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198 (202)
Q Consensus 143 ~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~ 198 (202)
++|.+++++.+..+..+++|+++++++|+++..+ .++...+..+++|+.||..
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN---DYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST---THHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH---HHHHHHHHHCCCcccccCC
Confidence 8888877654457788888999999999888775 3344467888999888864
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=3e-16 Score=120.54 Aligned_cols=108 Identities=24% Similarity=0.305 Sum_probs=56.6
Q ss_pred CCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcE
Q psy14661 42 IPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEE 117 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~ 117 (202)
..+++++.|++++|.+..++. .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. ....+++|+.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 345556666666666555554 255566666666666665554 345555555555555555554432 2233345555
Q ss_pred EEcccccCCC--CC-CCCCCCCccEEEccCCcccC
Q psy14661 118 LWVSYNYIEK--TK-GIGVMRKLKVLYMSNNLVKE 149 (202)
Q Consensus 118 L~l~~n~l~~--~~-~~~~~~~L~~L~l~~n~l~~ 149 (202)
|++++|.++. +| .+..+++|+.|++++|.+++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 5555555544 23 24445555555555554443
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=3.1e-16 Score=114.81 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=109.3
Q ss_pred CCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc-cCCcccccCCCcEE
Q psy14661 42 IPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEEL 118 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L 118 (202)
..+++++.|++++|.+..++ .+..+++|+.|++++|.++.. ..+..+++|++|++++|.++. .+.....+++|+.|
T Consensus 63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 35678999999999887776 488999999999999999974 889999999999999999986 33334455899999
Q ss_pred Eccccc-CCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCC
Q psy14661 119 WVSYNY-IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174 (202)
Q Consensus 119 ~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 174 (202)
++++|. ++.++.+..+++|+.|++++|.+++++ .+..+++|++|++.+|++.+
T Consensus 142 ~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred EccCCCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 999998 888888889999999999999999865 56788999999999999865
No 52
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=5e-16 Score=110.78 Aligned_cols=132 Identities=24% Similarity=0.187 Sum_probs=111.5
Q ss_pred ccCCCCCEEECCCCCCc--Cc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCC-CCC-CCCCCCccE
Q psy14661 65 AVLTNCEKLSLSTNMIE--KI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEK-TKG-IGVMRKLKV 139 (202)
Q Consensus 65 ~~l~~L~~L~l~~n~i~--~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~~~L~~ 139 (202)
...++|+.|++++|.++ .+ ..+..+++|++|++++|.++.+ .....+++|+.|++++|.++. +|. +..+++|+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34589999999999998 55 5568899999999999999887 444555899999999999998 664 556899999
Q ss_pred EEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccC
Q psy14661 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVL 200 (202)
Q Consensus 140 L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~ 200 (202)
|++++|.+++++.+..+..+++|++|++++|+++..+ .++...+..+++|++|+...+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST---THHHHHHTTCSSCCEETTEET
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH---HHHHHHHHhCccCcEecCCCC
Confidence 9999999999776568899999999999999999875 344457889999999986554
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=4.6e-16 Score=130.48 Aligned_cols=139 Identities=22% Similarity=0.226 Sum_probs=119.8
Q ss_pred hcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCC
Q psy14661 39 ENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAET 114 (202)
Q Consensus 39 ~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~ 114 (202)
.+...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++
T Consensus 22 ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 334456789999999999988876 499999999999999999988 56889999999999999998776 45556689
Q ss_pred CcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 115 LEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 115 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
|++|++++|.++.++ .++.+++|++|++++|.+.+++.+..++.+++|++|++++|.++...+
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 999999999999887 388999999999999999875545678899999999999999988763
No 54
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.3e-16 Score=111.68 Aligned_cols=128 Identities=24% Similarity=0.200 Sum_probs=110.7
Q ss_pred CCCCCCceEEEccCcccc--ccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccc-cCCcccccCCCcE
Q psy14661 41 GIPISEAKEVGLQMQFIE--KMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEE 117 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~--~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~ 117 (202)
...+++++.|++++|.+. .+|..+..+++|+.|++++|.++.+..+..+++|++|++++|.++. ++.....+++|+.
T Consensus 13 ~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 13 NRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp TCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred cCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 345678999999999987 8888889999999999999999988888899999999999999987 6665555689999
Q ss_pred EEcccccCCCCC---CCCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEec
Q psy14661 118 LWVSYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVFC 168 (202)
Q Consensus 118 L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l~ 168 (202)
|++++|.+++++ .+..+++|+.|++++|.+++++.. ..+..+++|++++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999864 578899999999999999886541 357788999998875
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.65 E-value=1.1e-15 Score=120.94 Aligned_cols=143 Identities=23% Similarity=0.273 Sum_probs=96.3
Q ss_pred CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccc
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYN 123 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 123 (202)
+++++.|++++|.+..++. +..+++|+.+++++|.++....+..+++|++|++++|.++.++. ...+++|+.|++++|
T Consensus 176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCC
Confidence 3445555555555554444 55555555555555555555336666777777777777776655 333467888888888
Q ss_pred cCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 124 YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 124 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
.++.++.+..+++|+.|++++|.+++++ .+..+++|+.|++++|.+....+. .+..+++|++|+-
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~------~l~~l~~L~~L~L 318 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDME------VIGGLTNLTTLFL 318 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHH------HHHTCTTCSEEEC
T ss_pred ccCCChhHhcCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChh------HhhccccCCEEEc
Confidence 8777766777788888888888877753 466778888888888888765532 5677888887763
No 56
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=4.8e-16 Score=131.67 Aligned_cols=143 Identities=24% Similarity=0.304 Sum_probs=126.2
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+.+|+.|++++|.+..++. +..+++|+.|++++|.++.+..+..+++|++|++++|.++.++.+.. +++|+.|++++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~-l~~L~~L~Ls~ 118 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKD-LKKLKSLSLEH 118 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTT-CTTCCEEECTT
T ss_pred cCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhcc-CCCCCEEEecC
Confidence 45679999999999998875 89999999999999999999669999999999999999998775444 48999999999
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCc
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~ 198 (202)
|.++.++.+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+.... .+..+++|+.|+.+
T Consensus 119 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~--------~l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 119 NGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV--------PLAGLTKLQNLYLS 183 (605)
T ss_dssp SCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG--------GGTTCTTCCEEECC
T ss_pred CCCCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch--------hhccCCCCCEEECc
Confidence 9999998889999999999999999986 36788999999999999998875 25778999987743
No 57
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=1.2e-15 Score=128.99 Aligned_cols=149 Identities=17% Similarity=0.145 Sum_probs=124.1
Q ss_pred hhcCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccC
Q psy14661 38 EENGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAE 113 (202)
Q Consensus 38 ~~~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~ 113 (202)
..+...+..++.|++++|.+..+++ .+..+++|++|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..++
T Consensus 26 ~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 26 EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 3344456789999999999988854 599999999999999999987 67899999999999999998764 4555668
Q ss_pred CCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCC
Q psy14661 114 TLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN 191 (202)
Q Consensus 114 ~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~ 191 (202)
+|+.|++++|.++.++ .++.+++|++|++++|.+.+++.. .+..+++|++|++++|.++...+. .++.+++
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~ 178 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKE------DMSSLQQ 178 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHH------HHHTTTT
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcc-cccCCcccCEEEcccCcccccChh------hhhhhcc
Confidence 9999999999999873 588999999999999999886432 444589999999999999877632 5777888
Q ss_pred cc
Q psy14661 192 LK 193 (202)
Q Consensus 192 L~ 193 (202)
|+
T Consensus 179 L~ 180 (606)
T 3t6q_A 179 AT 180 (606)
T ss_dssp CC
T ss_pred cc
Confidence 87
No 58
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.65 E-value=1.7e-15 Score=121.70 Aligned_cols=144 Identities=21% Similarity=0.215 Sum_probs=120.3
Q ss_pred CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEEL 118 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L 118 (202)
.+.+++.++++++.++.+|.. +..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356789999999999999987 78899999999999999987 57889999999999999998776 445556899999
Q ss_pred EcccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 119 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
++++|.++.+|. +..+++|++|++++|.+..++. ..+..+++|++|++++|.++... +..+++|+.|+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---------~~~l~~L~~L~ 192 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN 192 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC---------GGGCTTCSEEE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc---------cccccccceee
Confidence 999999998873 6889999999999999987643 56788999999999999988764 24456665544
No 59
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=5.6e-16 Score=127.63 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=122.1
Q ss_pred HhhhhhhcCCCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cc
Q psy14661 33 LKKWEEENGIPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GL 108 (202)
Q Consensus 33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~ 108 (202)
+....+.....+++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.+. ..
T Consensus 44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 123 (477)
T 2id5_A 44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH
Confidence 3334344456778899999999998887 45589999999999999999988 45788999999999999988654 44
Q ss_pred ccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHH
Q psy14661 109 EPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVK 186 (202)
Q Consensus 109 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~ 186 (202)
+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++++. ..+..+++|+.|++.+|.+....+. .+
T Consensus 124 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~------~~ 196 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY------SF 196 (477)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT------CS
T ss_pred ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh------hc
Confidence 555689999999999988764 57888899999999998887653 4577888888888888888776532 34
Q ss_pred HhCCCccccc
Q psy14661 187 KRLPNLKKLD 196 (202)
Q Consensus 187 ~~l~~L~~L~ 196 (202)
..+++|+.|+
T Consensus 197 ~~l~~L~~L~ 206 (477)
T 2id5_A 197 KRLYRLKVLE 206 (477)
T ss_dssp CSCTTCCEEE
T ss_pred ccCcccceee
Confidence 5566666655
No 60
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.64 E-value=1e-15 Score=119.90 Aligned_cols=144 Identities=15% Similarity=0.174 Sum_probs=76.7
Q ss_pred CCCceEEEccCcccc-ccchhhccCCCCCEEECCCCCCcCc--cCCCCCC-CCcEEEccCcccc-ccCCcccccCCCcEE
Q psy14661 44 ISEAKEVGLQMQFIE-KMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLK-KLKVLSLARNNIK-SFAGLEPLAETLEEL 118 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~-~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~-~L~~L~l~~n~l~-~~~~~~~~~~~L~~L 118 (202)
+++|+.|++++|.+. .+|..+..+++|++|++++|.+++. ..+..++ .|++|++++|.++ ..+.....+ +|+.|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-cccEE
Confidence 334444444444433 3344444444444444444444422 3344443 4455555555444 222222222 25555
Q ss_pred EcccccCCCC-C-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 119 WVSYNYIEKT-K-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 119 ~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
++++|.++.. + .+..+++|+.|++++|.++.... .+..+++|++|++++|.++...|. .+..+++|++|+
T Consensus 203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~ 274 (313)
T 1ogq_A 203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQ------GLTQLKFLHSLN 274 (313)
T ss_dssp ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCG------GGGGCTTCCEEE
T ss_pred ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCCh------HHhcCcCCCEEE
Confidence 5555555532 2 35667777777777777765322 366677788888888877755543 456677777665
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=4e-16 Score=123.92 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=124.6
Q ss_pred cCCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC--cccccCC
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--LEPLAET 114 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~ 114 (202)
....+++|+.|++++|.+..+++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.++. ....+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 34567889999999999888865 499999999999999999988 348889999999999999998775 5556689
Q ss_pred CcEEEcccc-cCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCC
Q psy14661 115 LEELWVSYN-YIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN 191 (202)
Q Consensus 115 L~~L~l~~n-~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~ 191 (202)
|+.|++++| .++.++ .+..+++|+.|++++|.+.+.. +..+..+++|+++++++|.+...+ ...+..+++
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~------~~~~~~~~~ 223 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLL------EIFVDVTSS 223 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSCSTTHH------HHHHHHTTT
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HHHHhccccCCeecCCCCccccch------hhhhhhccc
Confidence 999999999 466664 5888999999999999998753 357888999999999999986553 124566888
Q ss_pred ccccc
Q psy14661 192 LKKLD 196 (202)
Q Consensus 192 L~~L~ 196 (202)
|+.|+
T Consensus 224 L~~L~ 228 (353)
T 2z80_A 224 VECLE 228 (353)
T ss_dssp EEEEE
T ss_pred ccEEE
Confidence 88776
No 62
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=5e-15 Score=106.45 Aligned_cols=128 Identities=19% Similarity=0.258 Sum_probs=110.0
Q ss_pred ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEcccc
Q psy14661 47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSYN 123 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n 123 (202)
.+.++++++++..+|..+ .++++.|++++|.++.+ ..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 567899999999888654 37999999999999988 457889999999999999998774 3455689999999999
Q ss_pred cCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 124 YIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 124 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.++.++. +..+++|+.|++++|.++.++. ..+..+++|+++++++|++.+.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 9998873 7889999999999999998754 456889999999999999998763
No 63
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.64 E-value=4.5e-16 Score=111.97 Aligned_cols=134 Identities=24% Similarity=0.334 Sum_probs=114.4
Q ss_pred hccCCCCCEEECCCCCCcCccCCCCCC-CCcEEEccCccccccCCcccccCCCcEEEcccccCCCCC-C-CCCCCCccEE
Q psy14661 64 LAVLTNCEKLSLSTNMIEKINGLSGLK-KLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK-G-IGVMRKLKVL 140 (202)
Q Consensus 64 l~~l~~L~~L~l~~n~i~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~~L~~L 140 (202)
+..+++|+.|++++|.++.++.+..+. +|++|++++|.++.++.+ ..+++|+.|++++|.++.+| . +..+++|+.|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCC-CCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccccc-ccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 667889999999999999886666665 999999999999987544 44589999999999999887 4 4889999999
Q ss_pred EccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccCccCC
Q psy14661 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP 201 (202)
Q Consensus 141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~~~~~ 201 (202)
++++|.+++++.+..+..+++|+++++++|+++..+ .++...+..+++|+.||...++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~---~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST---THHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH---hHHHHHHHHCCccceeCCCcCC
Confidence 999999998876567889999999999999998774 5555678999999999977653
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.6e-16 Score=124.64 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=96.2
Q ss_pred CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCC-CCCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661 44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGL-SGLKKLKVLSLARNNIKSFAGLEPLAETLEELW 119 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 119 (202)
+++++.|++++|.+..+++ .+..+++|+.|++++|.++.. ..+ ..+++|++|++++|.++.++.... +++|+.|+
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc-cccCCEEE
Confidence 4556666666666666554 366677777777777777765 333 356777777777777776654443 36778888
Q ss_pred cccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 120 VSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 120 l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+++|.++.++ .+..+++|+.|++++|.+++++. .+..+++|+.+++++|++.+.. ....+..+++|+.++
T Consensus 198 Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~-----~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGT-----LRDFFSKNQRVQTVA 268 (317)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCBHHH-----HHHHHHTCHHHHHHH
T ss_pred CCCCcCCcchhhhcccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCccCcC-----HHHHHhccccceEEE
Confidence 8888777765 46677788888888887776543 5677778888888888876321 112445555555544
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.63 E-value=5.8e-15 Score=120.68 Aligned_cols=137 Identities=28% Similarity=0.260 Sum_probs=117.4
Q ss_pred CCceEEEccCccccccc-hhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEc
Q psy14661 45 SEAKEVGLQMQFIEKMD-SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV 120 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~-~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l 120 (202)
++++.|++++|.+..++ ..+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 57999999999977764 4589999999999999999987 57889999999999999998764 45555689999999
Q ss_pred ccccCCCC-C-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhH
Q psy14661 121 SYNYIEKT-K-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182 (202)
Q Consensus 121 ~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~ 182 (202)
++|.++.+ | .+..+++|+.|++++|.+++++. ..+..+++|+++++++|++++.++.-.+.
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCCcchHH
Confidence 99999886 4 58899999999999999998654 46788999999999999999988633333
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.1e-15 Score=119.52 Aligned_cols=147 Identities=20% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCCceEEEccCccccccchhhccC-----CCCCEEECCCCCCcCc--cCCCCCC-------------------------
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVL-----TNCEKLSLSTNMIEKI--NGLSGLK------------------------- 90 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l-----~~L~~L~l~~n~i~~~--~~~~~l~------------------------- 90 (202)
.+++++.|++++|.+..+|..+..+ ++|++|++++|.++.+ ..+..++
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 4455666666666555444333333 4555555555555444 3344444
Q ss_pred ---CCcEEEccCccccccCC----cccccCCCcEEEcccccCCCCC---CCCCCCCccEEEccCCcccCccccccCCCCC
Q psy14661 91 ---KLKVLSLARNNIKSFAG----LEPLAETLEELWVSYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEFVKLGECP 160 (202)
Q Consensus 91 ---~L~~L~l~~n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 160 (202)
+|++|++++|.++.++. ....+++|+.|++++|.+++.+ .+..+++|+.|++++|.++.++. .+. +
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~ 274 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--A 274 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--S
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--C
Confidence 44555555554442221 1112346666666666665532 24445667777777776665443 233 6
Q ss_pred cceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc--CccCC
Q psy14661 161 SLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD--GEVLP 201 (202)
Q Consensus 161 ~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~--~~~~~ 201 (202)
+|++|++++|.++..+ .+..+++|++|+ +++++
T Consensus 275 ~L~~L~Ls~N~l~~~p--------~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNP--------SPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEEECCSSCCCSCC--------CTTTSCEEEEEECTTCTTT
T ss_pred CceEEECCCCCCCCCh--------hHhhCCCCCEEeccCCCCC
Confidence 6777777777776663 235567776654 44443
No 67
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=3e-15 Score=120.30 Aligned_cols=105 Identities=24% Similarity=0.304 Sum_probs=52.1
Q ss_pred CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEE
Q psy14661 44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELW 119 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~ 119 (202)
+++++.|++++|.+..+++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.++. .+..+++|+.|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 3445555555555555443 355555555555555555554 234455555555555555554442 223334555555
Q ss_pred cccccCCCCC--CCCCCCCccEEEccCCccc
Q psy14661 120 VSYNYIEKTK--GIGVMRKLKVLYMSNNLVK 148 (202)
Q Consensus 120 l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~ 148 (202)
+++|.++.++ .+..+++|+.|++++|.++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 5555554443 2444455555555555443
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=6.5e-16 Score=120.70 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=98.9
Q ss_pred CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcC---c---cCCCCCCCCcEEEccCccccccCC----ccccc
Q psy14661 44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEK---I---NGLSGLKKLKVLSLARNNIKSFAG----LEPLA 112 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~---~---~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~ 112 (202)
+++++.|++++|.+..+++ .+..+++|+.|++++|.+.. + ..+..+++|++|++++|.++.++. ....+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 5567777777777666554 36677777777777777553 2 223566777777777777765543 23344
Q ss_pred CCCcEEEcccccCCCC-C-CCCCC---CCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHH
Q psy14661 113 ETLEELWVSYNYIEKT-K-GIGVM---RKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKK 187 (202)
Q Consensus 113 ~~L~~L~l~~n~l~~~-~-~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~ 187 (202)
++|+.|++++|.+++. | .+..+ ++|++|++++|.++.++. .+ .++|+.|++++|.++..+ ...
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~--------~~~ 291 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAP--------QPD 291 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCC--------CTT
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCc--------hhh
Confidence 7888888888888875 4 34444 688889998888887654 33 278889999999888764 235
Q ss_pred hCCCccccc--CccCC
Q psy14661 188 RLPNLKKLD--GEVLP 201 (202)
Q Consensus 188 ~l~~L~~L~--~~~~~ 201 (202)
.+++|+.|+ +++++
T Consensus 292 ~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 292 ELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCCCSCEECSSTTTS
T ss_pred hCCCccEEECcCCCCC
Confidence 678887655 55554
No 69
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=3.4e-15 Score=126.42 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=49.0
Q ss_pred CCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEc
Q psy14661 45 SEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWV 120 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l 120 (202)
++|+.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+.|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 345555555555444443 244555555555555555544 234445555555555555544442 2233345555555
Q ss_pred ccccCCCCC--CCCCCCCccEEEccCCccc
Q psy14661 121 SYNYIEKTK--GIGVMRKLKVLYMSNNLVK 148 (202)
Q Consensus 121 ~~n~l~~~~--~~~~~~~L~~L~l~~n~l~ 148 (202)
++|.++.++ .+..+++|+.|++++|.++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 555554433 2444444555555444443
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.62 E-value=1.6e-15 Score=126.81 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..+++ .+..+++|++|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus 22 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 22 SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp SCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred ccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 3345678888888888777653 488888888888888888877 568888888888888888887663 244557888
Q ss_pred EEEcccccCCCC--C-CCCCCCCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 117 ELWVSYNYIEKT--K-GIGVMRKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 117 ~L~l~~n~l~~~--~-~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
+|++++|.++.+ + .++.+++|+.|++++|. +..++ ...+..+++|++|++++|.+....
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEEC
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccC
Confidence 888888888754 3 47778888888888887 44433 245677788888888888776644
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=5.5e-15 Score=125.14 Aligned_cols=143 Identities=21% Similarity=0.216 Sum_probs=123.4
Q ss_pred CCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEE
Q psy14661 44 ISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELW 119 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~ 119 (202)
+.+++.+++++|.++.+|+. +..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 46689999999999999987 78899999999999999988 58999999999999999999877 3456668999999
Q ss_pred cccccCCCCCC--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+++|.++.+|. |+.+++|+.|++++|.+..++. ..+..+++|++|++++|.++..+ ++.+++|+.|+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---------~~~l~~L~~L~ 198 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---------LSLIPSLFHAN 198 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---------GGGCTTCSEEE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---------hhhhhhhhhhh
Confidence 99999999883 6899999999999999988643 57889999999999999998874 24466666554
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=4.1e-15 Score=125.79 Aligned_cols=141 Identities=20% Similarity=0.194 Sum_probs=118.2
Q ss_pred EEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccC
Q psy14661 49 EVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYI 125 (202)
Q Consensus 49 ~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l 125 (202)
+.+-++.++..+|..+. +++++|++++|.|+.+ ..|..+++|++|++++|.++.++ +.+..+++|++|++++|.+
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44555556888887553 5899999999999998 57999999999999999999887 4556668999999999999
Q ss_pred CCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 126 EKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 126 ~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
+.+| .|..+++|++|++++|.++.++. ..++.+++|++|++++|.+.....+. .++.+++|++|+-
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~-----~~~~l~~L~~L~L 180 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE-----YFSNLTNLEHLDL 180 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG-----GGGGCTTCCEEEC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch-----hhccchhhhhhcc
Confidence 9987 48999999999999999998754 46899999999999999998764322 5677888988763
No 73
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=3.3e-15 Score=128.01 Aligned_cols=150 Identities=20% Similarity=0.204 Sum_probs=110.2
Q ss_pred cCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCC
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETL 115 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L 115 (202)
+...+.+++.|++++|.+..+++. +..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. .+..+++|
T Consensus 20 p~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 20 PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 333456788888888888777764 88888888888888888876 456778888888888888887774 35555788
Q ss_pred cEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHH--HhCCC
Q psy14661 116 EELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVK--KRLPN 191 (202)
Q Consensus 116 ~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~--~~l~~ 191 (202)
++|++++|.++.++ .++.+++|++|++++|.+.+.. +..+..+++|++|++.+|.++...+. .+ ..+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~~~~~ 172 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKSE------ELDIFANSS 172 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCHH------HHGGGTTCE
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCHH------Hhhcccccc
Confidence 88888888887765 4778888888888888877643 34567788888888888887766521 22 23466
Q ss_pred ccccc
Q psy14661 192 LKKLD 196 (202)
Q Consensus 192 L~~L~ 196 (202)
|++|+
T Consensus 173 L~~L~ 177 (680)
T 1ziw_A 173 LKKLE 177 (680)
T ss_dssp ESEEE
T ss_pred ccEEE
Confidence 66665
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4e-16 Score=131.30 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=109.7
Q ss_pred CCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCccc
Q psy14661 69 NCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVK 148 (202)
Q Consensus 69 ~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~ 148 (202)
.|+.|++++|.++.++.+..+++|++|++++|.++.+|..++.+++|+.|++++|.++++|.++.+++|+.|++++|.++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~ 521 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 521 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence 68999999999999966999999999999999999998767777999999999999999998899999999999999999
Q ss_pred CccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 149 EWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 149 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
++..+..++.+++|+.|++++|+++..++. .......+|+|+.||
T Consensus 522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~---~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGI---QERLAEMLPSVSSIL 566 (567)
T ss_dssp SSSTTGGGGGCTTCCEEECTTSGGGGSSSC---TTHHHHHCTTCSEEE
T ss_pred CCCCcHHHhcCCCCCEEEecCCcCCCCccH---HHHHHHHCcccCccC
Confidence 874245788999999999999999988632 223567799999885
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=6.7e-15 Score=115.75 Aligned_cols=126 Identities=27% Similarity=0.327 Sum_probs=62.2
Q ss_pred ceEEEccCccccccchh-hccCCCCCEEECCCCCCcC--c--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661 47 AKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEK--I--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~--~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 121 (202)
++.|++++|.+..++.. +..+++|+.|++++|.++. . ..+..+++|++|++++|.++.++.... ++|+.|+++
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECT
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECC
Confidence 44444444444433332 4555666666666665543 1 334455556666665555554442221 345555555
Q ss_pred cccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCC
Q psy14661 122 YNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175 (202)
Q Consensus 122 ~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 175 (202)
+|.++.++ .+..+++|+.|++++|.+++++. ..+..+++|++|++++|.++..
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l 255 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKV 255 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccC
Confidence 55554432 24455555555555555554321 2344455555555555555544
No 76
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=5.4e-16 Score=121.41 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=86.9
Q ss_pred CCceEEEccCcccc---ccchhhccCCCCCEEECCC-CCCcCc--cCCCCCCCCcEEEccCcccc-ccCCcccccCCCcE
Q psy14661 45 SEAKEVGLQMQFIE---KMDSSLAVLTNCEKLSLST-NMIEKI--NGLSGLKKLKVLSLARNNIK-SFAGLEPLAETLEE 117 (202)
Q Consensus 45 ~~l~~L~l~~~~i~---~l~~~l~~l~~L~~L~l~~-n~i~~~--~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~ 117 (202)
.+++.|++++|.+. .+|..+..+++|+.|++++ |.+.+. ..+..+++|++|++++|.++ .++..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56888888888865 5777788888888888884 777654 56777777788888777776 45544445567777
Q ss_pred EEcccccCCC-CC-CCCCCCCccEEEccCCcccCccccccCCCCC-cceEEEecCCcCCC
Q psy14661 118 LWVSYNYIEK-TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECP-SLIDLVFCGNPLVE 174 (202)
Q Consensus 118 L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~l~l~~n~~~~ 174 (202)
|++++|.++. +| .+..+++|++|++++|.+++. .+..+..++ +|+++++++|.++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~ 188 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTG 188 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeec
Confidence 7777777763 44 466677777777777776531 123445554 56666666666553
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=130.46 Aligned_cols=143 Identities=17% Similarity=0.218 Sum_probs=119.2
Q ss_pred hhhhhhcCCCCCCceEEEccCccccccc-hhhccCCCCCEEECCCCCCc-Cc--cCCCCCCCCcEEEccCcccccc-CCc
Q psy14661 34 KKWEEENGIPISEAKEVGLQMQFIEKMD-SSLAVLTNCEKLSLSTNMIE-KI--NGLSGLKKLKVLSLARNNIKSF-AGL 108 (202)
Q Consensus 34 ~~~~~~~~~~~~~l~~L~l~~~~i~~l~-~~l~~l~~L~~L~l~~n~i~-~~--~~~~~l~~L~~L~l~~n~l~~~-~~~ 108 (202)
.+|...+. .+++++.|++++|.+..++ ..+..+++|+.|++++|... .+ ..|..+++|++|++++|.++.+ +..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 34555555 7789999999999988875 45999999999999999544 44 6789999999999999999876 456
Q ss_pred ccccCCCcEEEcccccCCC-CC-C--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 109 EPLAETLEELWVSYNYIEK-TK-G--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 109 ~~~~~~L~~L~l~~n~l~~-~~-~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
+..+++|+.|++++|.+++ ++ . ++.+++|++|++++|.+.+......++.+++|++|++++|.+....+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 6667899999999999986 34 3 88999999999999999886543578899999999999999988764
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=6.8e-15 Score=117.34 Aligned_cols=145 Identities=20% Similarity=0.172 Sum_probs=118.1
Q ss_pred ceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCC-CCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661 47 AKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLS-GLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY 122 (202)
Q Consensus 47 l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~ 122 (202)
-+.++++++.+..+|..+. +.++.|++++|.++.+ ..+. .+++|++|++++|.++.++ ..+..+++|+.|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4678999999999998543 5689999999999998 4566 8999999999999999877 4455568999999999
Q ss_pred ccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
|.++.++ .|..+++|+.|++++|.+..++ ...+..+++|++|++++|.++..++. ... .+..+++|+.|+-
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~--~~~-~~~~l~~L~~L~L 170 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVE--LIK-DGNKLPKLMLLDL 170 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGG--GTC-----CTTCCEEEC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHH--Hhc-CcccCCcCCEEEC
Confidence 9999876 3889999999999999999864 35788999999999999999998632 100 1156888888763
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=7.5e-15 Score=115.63 Aligned_cols=104 Identities=25% Similarity=0.317 Sum_probs=80.6
Q ss_pred CCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW 119 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 119 (202)
.+++++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++.... ++|++|+
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 45578889999998888765 588889999999999988887 568888889999998888887764333 5778888
Q ss_pred cccccCCCCCC--CCCCCCccEEEccCCccc
Q psy14661 120 VSYNYIEKTKG--IGVMRKLKVLYMSNNLVK 148 (202)
Q Consensus 120 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 148 (202)
+++|.++.++. +..+++|+.|++++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 88887777652 666777777777777664
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=1.2e-14 Score=121.45 Aligned_cols=127 Identities=24% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCCCceEEEccCccccccch---hhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDS---SLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~---~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 118 (202)
.+++++.|++++|.+..++. .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++.... ++|+.|
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L 436 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVL 436 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEE
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEE
Confidence 45667777777777666553 366777777777777777766 556666677777777776665443221 233444
Q ss_pred EcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 119 ~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
++++|.+++++ ..+++|+.|++++|.++.++. ...+++|++|++++|.++..+
T Consensus 437 ~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 437 DVSNNNLDSFS--LFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp ECCSSCCSCCC--CCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC
T ss_pred ECCCCChhhhc--ccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC
Confidence 44444333321 234444445555554444332 123444444444444444443
No 81
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.60 E-value=3.6e-15 Score=126.14 Aligned_cols=132 Identities=19% Similarity=0.169 Sum_probs=71.1
Q ss_pred CCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc--cCCcccccCCCcE
Q psy14661 44 ISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEE 117 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~L~~ 117 (202)
+++++.|++++|.+...++ .+..+++|+.|++++|.++.. ..+..+++|++|++++|.++. .+.....+++|+.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 3444555555554443332 244555555555555555543 345555555666665555553 3333444456666
Q ss_pred EEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 118 LWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 118 L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
|++++|.+++++ .+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.++..+
T Consensus 478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEE
T ss_pred EECCCCcCCccChhhhcccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccC
Confidence 666666665543 3556666666666666666542 245566666666666666666543
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.59 E-value=7.5e-15 Score=120.03 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=110.8
Q ss_pred CCCCceEEEccCccccccc-hhhccCCCCCEEECCCCCCcC-c--cCCCCCCCCcEEEccCcccccc-CCcccccCCCcE
Q psy14661 43 PISEAKEVGLQMQFIEKMD-SSLAVLTNCEKLSLSTNMIEK-I--NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEE 117 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~-~~l~~l~~L~~L~l~~n~i~~-~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~ 117 (202)
.+.+++.|++++|.+..++ ..+..+++|++|++++|.+.. + ..|..+++|++|++++|.++.+ +..+..+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 4577999999999988874 459999999999999998874 3 5688899999999999998876 455555689999
Q ss_pred EEcccccCCC-CC-C--CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 118 LWVSYNYIEK-TK-G--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 118 L~l~~n~l~~-~~-~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
|++++|.+++ ++ . +..+++|+.|++++|.+.+......+..+++|++|++++|.+....+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 9999999986 22 3 78889999999999999876432337788999999999999887764
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.59 E-value=1.1e-14 Score=119.80 Aligned_cols=102 Identities=29% Similarity=0.377 Sum_probs=41.3
Q ss_pred CCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccccc
Q psy14661 45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY 124 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 124 (202)
++++.|++++|.+..++. +..+++|+.|++++|.++....+..+++|++|++++|.++.++.+ ..+++|+.|++++|.
T Consensus 221 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL-AGLTALTNLELNENQ 298 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGG-TTCTTCSEEECCSSC
T ss_pred CCCCEEECCCCCcccchh-hhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccc-cCCCccCeEEcCCCc
Confidence 334444444444333322 344444444444444444442244444444444444444433321 112344444444444
Q ss_pred CCCCCCCCCCCCccEEEccCCccc
Q psy14661 125 IEKTKGIGVMRKLKVLYMSNNLVK 148 (202)
Q Consensus 125 l~~~~~~~~~~~L~~L~l~~n~l~ 148 (202)
+++++.+..+++|+.|++++|.++
T Consensus 299 l~~~~~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 299 LEDISPISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp CSCCGGGGGCTTCSEEECCSSCCS
T ss_pred ccCchhhcCCCCCCEEECcCCcCC
Confidence 443333333334444444444333
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.59 E-value=1e-14 Score=119.89 Aligned_cols=141 Identities=23% Similarity=0.319 Sum_probs=108.0
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+++++.|++++|.+..+++ +..+++|+.|++++|.++.+..+..+++|++|++++|.++.++.+ ..+++|+.|++++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYF 318 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGG-GGCTTCSEEECCS
T ss_pred cCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhh-cCCCCCCEEECcC
Confidence 46778888888888777776 778888888888888888875577788888888888888776653 3447888888888
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
|.+++++.+..+++|+.|++++|.+++++ .+..+++|+.+++++|.+++..| +..+++|+.|+
T Consensus 319 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~ 381 (466)
T 1o6v_A 319 NNISDISPVSSLTKLQRLFFYNNKVSDVS---SLANLTNINWLSAGHNQISDLTP--------LANLTRITQLG 381 (466)
T ss_dssp SCCSCCGGGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG--------GTTCTTCCEEE
T ss_pred CcCCCchhhccCccCCEeECCCCccCCch---hhccCCCCCEEeCCCCccCccch--------hhcCCCCCEEe
Confidence 88877666677788888888888877753 56777888888888888877652 45677776655
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=7.7e-16 Score=127.45 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=75.9
Q ss_pred CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCC-CCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661 44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLS-GLKKLKVLSLARNNIKSFAGLEPLAETLEELW 119 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 119 (202)
+++|+.|++++|.+..+++ .+..+++|+.|++++|.+++. ..+. .+++|++|++++|.++.++.... +++|+.|+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~-l~~L~~L~ 197 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLD 197 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC-CTTCCEEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc-CCCCCEEE
Confidence 3445556666655555433 355566666666666666654 3333 45666666666666665544333 35666666
Q ss_pred cccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCC
Q psy14661 120 VSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173 (202)
Q Consensus 120 l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~ 173 (202)
+++|.++++| .+..+++|+.|++++|.+++++. .+..+++|+.+++.+|++.
T Consensus 198 Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 198 LSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCCCCHhHcCCCCccEEEecCCcCcccch--hhccCCCCCEEEcCCCCCc
Confidence 6666666654 45566666666666666665443 4556666677777766665
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=9.6e-15 Score=114.86 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=100.6
Q ss_pred HhhhhhhcCCCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCCCcCc-cC----------------------CCC
Q psy14661 33 LKKWEEENGIPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNMIEKI-NG----------------------LSG 88 (202)
Q Consensus 33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~i~~~-~~----------------------~~~ 88 (202)
+....+.....+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+ .. +..
T Consensus 64 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 64 ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTT
T ss_pred CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcC
Confidence 3333333345677788888888887776 45588888888888888877755 22 334
Q ss_pred CCCCcEEEccCccccc---cCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEE
Q psy14661 89 LKKLKVLSLARNNIKS---FAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165 (202)
Q Consensus 89 l~~L~~L~l~~n~l~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l 165 (202)
+++|++|++++|.++. .+.....+++|+.|++++|.++.+|.. ..++|+.|++++|.++++. +..+..+++|+.|
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 221 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVD-AASLKGLNNLAKL 221 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEEC-TGGGTTCTTCCEE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccC-HHHhcCCCCCCEE
Confidence 4455555555555432 112233345666666666666666531 1267777888888777653 3567888889999
Q ss_pred EecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 166 VFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 166 ~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
++++|.++...+. .+..+++|++|+
T Consensus 222 ~Ls~n~l~~~~~~------~~~~l~~L~~L~ 246 (330)
T 1xku_A 222 GLSFNSISAVDNG------SLANTPHLRELH 246 (330)
T ss_dssp ECCSSCCCEECTT------TGGGSTTCCEEE
T ss_pred ECCCCcCceeChh------hccCCCCCCEEE
Confidence 9999988877643 456677777766
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.59 E-value=1.4e-14 Score=124.08 Aligned_cols=145 Identities=23% Similarity=0.229 Sum_probs=98.1
Q ss_pred CCceEEEccCccc---cccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC---------ccc
Q psy14661 45 SEAKEVGLQMQFI---EKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG---------LEP 110 (202)
Q Consensus 45 ~~l~~L~l~~~~i---~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~---------~~~ 110 (202)
++++.|++++|.+ +.+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. ...
T Consensus 454 ~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~ 533 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533 (680)
T ss_dssp TTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTT
T ss_pred cccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhc
Confidence 3444444444442 23445566777777888877777776 447777788888888887765421 133
Q ss_pred ccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHH-
Q psy14661 111 LAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKK- 187 (202)
Q Consensus 111 ~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~- 187 (202)
.+++|+.|++++|.++.+| .|..+++|+.|++++|.++.++. ..+..+++|+.|++++|.++...+. .+.
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~ 606 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKK------VFGP 606 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHH------HHHH
T ss_pred CCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChh------Hhcc
Confidence 4467888888888888776 37788888888888888887654 4567778888888888888877632 333
Q ss_pred hCCCccccc
Q psy14661 188 RLPNLKKLD 196 (202)
Q Consensus 188 ~l~~L~~L~ 196 (202)
.+++|+.++
T Consensus 607 ~~~~L~~l~ 615 (680)
T 1ziw_A 607 AFRNLTELD 615 (680)
T ss_dssp HHTTCSEEE
T ss_pred cccccCEEE
Confidence 566666655
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.59 E-value=7.4e-15 Score=123.16 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=51.8
Q ss_pred CceEEEccCccccccchhhccCCCCCEEECCCCCCcCc---cCCCCCCCCcEEEccCcccccc-CCcccccCCCcEEEcc
Q psy14661 46 EAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVS 121 (202)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~L~~L~l~ 121 (202)
+++.|++++|.+..++..+..+++|+.|++++|.+... ..+..+++|++|++++|.+... +.....+++|+.|+++
T Consensus 374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 34444444444333333333444444444444443332 1233444444444444443321 1222222444444444
Q ss_pred cccCC--CCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 122 YNYIE--KTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 122 ~n~l~--~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
+|.++ .+| .+..+++|+.|++++|.++++. +..+..+++|++|++++|.++..+
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 510 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQLKSVP 510 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCC-hhhhhcccCCCEEeCCCCcCCCCC
Confidence 44443 122 2344444444444444444321 123444444444444444444443
No 89
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=2.6e-15 Score=117.69 Aligned_cols=146 Identities=22% Similarity=0.261 Sum_probs=104.0
Q ss_pred CCCCCceEEEccCccccccchh-----------------hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccc
Q psy14661 42 IPISEAKEVGLQMQFIEKMDSS-----------------LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI 102 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~-----------------l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l 102 (202)
..+++|+.|++++|.+..++.. ...+++|+.|++++|.++.+ ..+..+++|++|++++|.+
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp TTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred hhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 4566788888888876655421 12345677777777777766 4666778888888888888
Q ss_pred cccC--CcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchh
Q psy14661 103 KSFA--GLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180 (202)
Q Consensus 103 ~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 180 (202)
+..+ .+...+++|+.|++++|.++.++....+++|+.|++++|.+++++. .+..+++|+.|++++|.++..+.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~--- 231 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK--- 231 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT---
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchhh---
Confidence 7644 2333457888888888888877765567888888888888887654 47778888888888888887642
Q ss_pred hHHHHHHhCCCccccc
Q psy14661 181 YKSEVKKRLPNLKKLD 196 (202)
Q Consensus 181 ~~~~~~~~l~~L~~L~ 196 (202)
.+..+++|+.|+
T Consensus 232 ----~~~~l~~L~~L~ 243 (317)
T 3o53_A 232 ----ALRFSQNLEHFD 243 (317)
T ss_dssp ----TCCCCTTCCEEE
T ss_pred ----HhhcCCCCCEEE
Confidence 346677787765
No 90
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.57 E-value=2.5e-14 Score=117.53 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=88.4
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+++++.|++++|.+..+| .+..+++|+.|++++|.+++++ +..+++|++|++++|.++.++ ...+++|+.|++++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 3567888888888888776 4888888888888888888874 777888888888888887764 33447888888888
Q ss_pred ccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCC
Q psy14661 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170 (202)
Q Consensus 123 n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n 170 (202)
|.++.++ ++.+++|+.|++++|.+++++ ++.+++|+++++++|
T Consensus 116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 116 NKLTKLD-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLN 158 (457)
T ss_dssp SCCSCCC-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTC
T ss_pred CcCCeec-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCC
Confidence 8887765 677778888888888777642 344555555555555
No 91
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=9.8e-15 Score=124.50 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=86.2
Q ss_pred CCceEEEccCccccccch--hhccCCCCCEEECCCCCCc-CccCCCCCCCCcEEEccCccccccCCcccccCC-CcEEEc
Q psy14661 45 SEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNNIKSFAGLEPLAET-LEELWV 120 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~l 120 (202)
++|+.|++++|.+..+|. .+..+++|+.|++++|.++ .++.+..+++|++|++++|.++.+|.....+++ |+.|++
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEc
Confidence 445555555555555555 4555555666666655555 234555555566666666655555543444455 777777
Q ss_pred ccccCCCCCC-CCCC--CCccEEEccCCcccCccccccCC-------CCCcceEEEecCCcCCCCCCchhhHHHHHHhCC
Q psy14661 121 SYNYIEKTKG-IGVM--RKLKVLYMSNNLVKEWAEFVKLG-------ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLP 190 (202)
Q Consensus 121 ~~n~l~~~~~-~~~~--~~L~~L~l~~n~l~~~~~~~~~~-------~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~ 190 (202)
++|.++.+|. +... ++|+.|++++|.+.+. .+..+. .+++|++|++++|.++..++. .+..++
T Consensus 385 s~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~------~~~~l~ 457 (636)
T 4eco_A 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE------LFSTGS 457 (636)
T ss_dssp CSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT-TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH------HHHTTC
T ss_pred cCCcCcccchhhhhcccCccCEEECcCCcCCCc-chhhhcccccccccCCCCCEEECcCCccCcCCHH------HHccCC
Confidence 7777766663 3332 3677777777776652 223344 566788888888888766532 455677
Q ss_pred CcccccC
Q psy14661 191 NLKKLDG 197 (202)
Q Consensus 191 ~L~~L~~ 197 (202)
+|++|+-
T Consensus 458 ~L~~L~L 464 (636)
T 4eco_A 458 PLSSINL 464 (636)
T ss_dssp CCSEEEC
T ss_pred CCCEEEC
Confidence 7777653
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.57 E-value=4.8e-15 Score=123.22 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=105.4
Q ss_pred CCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW 119 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 119 (202)
.+++++.|++++|.+..+++ .+..+++|++|++++|.++.+ ..|..+++|++|++++|.++.+|.. .+++|++|+
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 34789999999999888774 588999999999999999987 5788999999999999999888755 458999999
Q ss_pred cccccCCCC--C-CCCCCCCccEEEccCCcccCccccccCCCCCcc--eEEEecCCcC--CCCC
Q psy14661 120 VSYNYIEKT--K-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL--IDLVFCGNPL--VEGM 176 (202)
Q Consensus 120 l~~n~l~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L--~~l~l~~n~~--~~~~ 176 (202)
+++|.++.+ | .++.+++|++|++++|.+.+. .+..+++| +.+++.+|.+ ....
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccccc
Confidence 999999874 4 588899999999999988762 24455566 9999999988 4443
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=3.1e-15 Score=116.94 Aligned_cols=149 Identities=21% Similarity=0.127 Sum_probs=112.2
Q ss_pred CCCCceEEEccCcccc-ccchhh--ccCCCCCEEECCCCCCcCc-cCCCCC-----CCCcEEEccCccccccC-Cccccc
Q psy14661 43 PISEAKEVGLQMQFIE-KMDSSL--AVLTNCEKLSLSTNMIEKI-NGLSGL-----KKLKVLSLARNNIKSFA-GLEPLA 112 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~-~l~~~l--~~l~~L~~L~l~~n~i~~~-~~~~~l-----~~L~~L~l~~n~l~~~~-~~~~~~ 112 (202)
.+++++.|++++|.+. .+|..+ ..+++|+.|++++|.+++. ..+..+ ++|++|++++|.++.++ ..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4788999999999976 577765 8899999999999999987 334444 89999999999999877 555566
Q ss_pred CCCcEEEcccccCCCC---C-C--CCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEecCCcCCCCCCchhhHHH
Q psy14661 113 ETLEELWVSYNYIEKT---K-G--IGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVFCGNPLVEGMDDPLYKSE 184 (202)
Q Consensus 113 ~~L~~L~l~~n~l~~~---~-~--~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~ 184 (202)
++|+.|++++|.+.+. + . +..+++|+.|++++|.+++++.. ..+..+++|++|++++|.++...+.+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----- 247 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP----- 247 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-----
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-----
Confidence 8999999999987642 2 2 37788899999999988854432 23346678888888888887754211
Q ss_pred HHHhCCCccccc
Q psy14661 185 VKKRLPNLKKLD 196 (202)
Q Consensus 185 ~~~~l~~L~~L~ 196 (202)
.+..+++|++|+
T Consensus 248 ~~~~l~~L~~L~ 259 (312)
T 1wwl_A 248 SCDWPSQLNSLN 259 (312)
T ss_dssp CCCCCTTCCEEE
T ss_pred hhhhcCCCCEEE
Confidence 233456676665
No 94
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=120.48 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCCceEEEccCccccc-cchhhccCCCCCEEECCCCCCcCc----cCCCCCCCCcEEEccCccccc-cCC-ccccc---
Q psy14661 43 PISEAKEVGLQMQFIEK-MDSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS-FAG-LEPLA--- 112 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~-l~~~l~~l~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~--- 112 (202)
.+++++.|++++|.+.. +|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++. ....+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 34445555555555433 333344555555555555555432 224444445555555544443 331 11112
Q ss_pred -------------------CCCcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661 113 -------------------ETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 113 -------------------~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 172 (202)
++|+.|++++|.++.+| .+..+++|+.|++++|.+++++. ..+..+++|+++++++|++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD-GIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCH-HHhccCCcccEEECcCCCC
Confidence 35666666666666655 24466666666666666665543 2355666666777777766
Q ss_pred CCCC
Q psy14661 173 VEGM 176 (202)
Q Consensus 173 ~~~~ 176 (202)
.+.+
T Consensus 481 ~c~c 484 (520)
T 2z7x_B 481 DCSC 484 (520)
T ss_dssp CCCH
T ss_pred cccC
Confidence 6654
No 95
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.57 E-value=1.2e-14 Score=126.39 Aligned_cols=77 Identities=23% Similarity=0.227 Sum_probs=45.7
Q ss_pred CCCcEEEcccccCCC-CC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCC
Q psy14661 113 ETLEELWVSYNYIEK-TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLP 190 (202)
Q Consensus 113 ~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~ 190 (202)
++|+.|++++|.+++ +| .++.++.|+.|++++|.+++. .+..++.+++|+.|++++|.++...|. .+..++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~g~ip~------~l~~l~ 704 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNILDLSSNKLDGRIPQ------AMSALT 704 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEECCCG------GGGGCC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC-CChHHhCCCCCCEEECCCCcccCcCCh------HHhCCC
Confidence 345566666666653 44 356666666666666666541 234566666666666666666655543 456666
Q ss_pred Cccccc
Q psy14661 191 NLKKLD 196 (202)
Q Consensus 191 ~L~~L~ 196 (202)
+|++||
T Consensus 705 ~L~~L~ 710 (768)
T 3rgz_A 705 MLTEID 710 (768)
T ss_dssp CCSEEE
T ss_pred CCCEEE
Confidence 666655
No 96
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.3e-14 Score=103.76 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=97.4
Q ss_pred CCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcE
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEE 117 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~ 117 (202)
...+.+++.|++++|.+..+|..+..+++|+.|++++|.|+.+ ..|..+++|++|++++|.++.++ ..+..+++|+.
T Consensus 27 ~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 106 (193)
T 2wfh_A 27 KGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106 (193)
T ss_dssp SCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred CCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence 3456789999999999999998899999999999999999998 56999999999999999999877 34555689999
Q ss_pred EEcccccCCCCC--CCCCCCCccEEEccCCcccC
Q psy14661 118 LWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKE 149 (202)
Q Consensus 118 L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~ 149 (202)
|++++|.++.++ .+..+++|+.|++++|.+..
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999999987 38889999999999998865
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=1.6e-14 Score=121.30 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=68.3
Q ss_pred CCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEc
Q psy14661 44 ISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l 120 (202)
+++++.|++++|.+..+++ .+..+++|++|++++|.++.+ ..|..+++|++|++++|.++.+|.. .+++|+.|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 3456666666666555553 355666666666666666555 3455566666666666666555533 2356666666
Q ss_pred ccccCCCCC---CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661 121 SYNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 121 ~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 172 (202)
++|.++.++ .++.+++|++|++++|.+... .+..+..+ +|+.+++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-TTGGGTTS-CEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC-chhhhhhc-eeeEEEeecccc
Confidence 666665543 355556666666666655542 21222222 336666666655
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.56 E-value=3.7e-14 Score=119.15 Aligned_cols=133 Identities=16% Similarity=0.126 Sum_probs=77.1
Q ss_pred CCCCceEEEccCccccc-cchhhccCCCCCEEECCCCCCcCc----cCCCCCCCCcEEEccCccccc-cCC-ccccc---
Q psy14661 43 PISEAKEVGLQMQFIEK-MDSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS-FAG-LEPLA--- 112 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~-l~~~l~~l~~L~~L~l~~n~i~~~----~~~~~l~~L~~L~l~~n~l~~-~~~-~~~~~--- 112 (202)
.+++++.|++++|.+.. +|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++. ++. ....+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 45566666776666554 444466666666666666666654 235566666666666666654 331 12222
Q ss_pred -------------------CCCcEEEcccccCCCCC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661 113 -------------------ETLEELWVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 113 -------------------~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 172 (202)
++|+.|++++|.++.+| .+..+++|+.|++++|.+++++. ..+..+++|+.+++++|++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCCB
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCCc
Confidence 35566666666666555 34456666666666666665543 1355666666666666666
Q ss_pred CCCC
Q psy14661 173 VEGM 176 (202)
Q Consensus 173 ~~~~ 176 (202)
.+.+
T Consensus 510 ~c~c 513 (562)
T 3a79_B 510 DCTC 513 (562)
T ss_dssp CCCH
T ss_pred CCCc
Confidence 6554
No 99
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.56 E-value=4e-14 Score=119.72 Aligned_cols=136 Identities=22% Similarity=0.141 Sum_probs=70.4
Q ss_pred CCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc------------------
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN------------------ 100 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n------------------ 100 (202)
...+++++.|++++|.+..+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 3455667777777777666666666666777777776666654 33444444444444444
Q ss_pred -------ccccc---CCcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEec
Q psy14661 101 -------NIKSF---AGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168 (202)
Q Consensus 101 -------~l~~~---~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~ 168 (202)
.++.. +.....+++|+.|++++|.++.++ .+..+++|+.|++++|.+........+..+++|+.|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 44332 112222344555555555444332 244455555555555554443222234455555555555
Q ss_pred CCcCCCCC
Q psy14661 169 GNPLVEGM 176 (202)
Q Consensus 169 ~n~~~~~~ 176 (202)
+|.+....
T Consensus 434 ~n~l~~~~ 441 (606)
T 3t6q_A 434 HSLLDISS 441 (606)
T ss_dssp TCCCBTTC
T ss_pred CCccCCcC
Confidence 55554443
No 100
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.56 E-value=1.5e-14 Score=125.76 Aligned_cols=147 Identities=22% Similarity=0.188 Sum_probs=111.0
Q ss_pred CCCceEEEccCcccc-ccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcccc-ccCCcccccCCCcEEE
Q psy14661 44 ISEAKEVGLQMQFIE-KMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-SFAGLEPLAETLEELW 119 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~-~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~L~~L~ 119 (202)
+++++.|++++|.+. .+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.++ .++.....+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 556888888888855 5677788888888888888888865 66778888888888888887 4555555557888888
Q ss_pred cccccCCC-CC-CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 120 VSYNYIEK-TK-GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 120 l~~n~l~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
+++|.+++ +| .+..+++|+.|++++|.+++. .+.+++.+++|++|++++|.++...|. .++.+++|+.|+-
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~------~l~~l~~L~~L~L 545 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPA------ELGDCRSLIWLDL 545 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCG------GGGGCTTCCEEEC
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCH------HHcCCCCCCEEEC
Confidence 88888874 45 477788888888888888752 334677788888888888888765543 5677888877764
No 101
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.56 E-value=1.7e-14 Score=113.56 Aligned_cols=148 Identities=23% Similarity=0.239 Sum_probs=78.0
Q ss_pred CCCCCCceEEEccCcccccc-chhhccCCCCCEEECCCCCCcCc-cC----------------------CCCCCCCcEEE
Q psy14661 41 GIPISEAKEVGLQMQFIEKM-DSSLAVLTNCEKLSLSTNMIEKI-NG----------------------LSGLKKLKVLS 96 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l-~~~l~~l~~L~~L~l~~n~i~~~-~~----------------------~~~l~~L~~L~ 96 (202)
...+++|+.|++++|.+..+ |..+..+++|++|++++|.++.+ .. +..+++|++|+
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 34556667777776666655 33466666666666666665544 21 33344444444
Q ss_pred ccCccccc--c-CCccccc--------------------CCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCcc
Q psy14661 97 LARNNIKS--F-AGLEPLA--------------------ETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWA 151 (202)
Q Consensus 97 l~~n~l~~--~-~~~~~~~--------------------~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~ 151 (202)
+++|.++. . +.....+ ++|+.|++++|.++.++ .+..+++|+.|++++|.+.+++
T Consensus 154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 44444421 0 0111000 23444444444444433 2455566666666666666543
Q ss_pred ccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 152 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
. ..+..+++|+.|++++|.++..+. .+..+++|++|+
T Consensus 234 ~-~~~~~l~~L~~L~L~~N~l~~lp~-------~l~~l~~L~~L~ 270 (332)
T 2ft3_A 234 N-GSLSFLPTLRELHLDNNKLSRVPA-------GLPDLKLLQVVY 270 (332)
T ss_dssp T-TGGGGCTTCCEEECCSSCCCBCCT-------TGGGCTTCCEEE
T ss_pred h-hHhhCCCCCCEEECCCCcCeecCh-------hhhcCccCCEEE
Confidence 2 345566677777777777765542 245566666655
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=7.3e-15 Score=121.63 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=99.6
Q ss_pred CCCCCCceEEEccCccccccchh-----------------hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDSS-----------------LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN 101 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~-----------------l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~ 101 (202)
...+++|+.|++++|.+..++.. ...+++|+.|++++|.++.+ ..+..+++|++|++++|.
T Consensus 76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (487)
T 3oja_A 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (487)
T ss_dssp CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC
T ss_pred cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC
Confidence 34567788888888876665531 12245667777777777765 456667778888888887
Q ss_pred ccccC-C-cccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCch
Q psy14661 102 IKSFA-G-LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179 (202)
Q Consensus 102 l~~~~-~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 179 (202)
++..+ . +...+++|+.|++++|.+++++....+++|+.|++++|.+++++. .+..+++|+.|++++|.++..++
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~-- 231 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK-- 231 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT--
T ss_pred CCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccch--
Confidence 77533 2 332457788888888887777665567788888888888877543 46677888888888888876542
Q ss_pred hhHHHHHHhCCCccccc
Q psy14661 180 LYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 180 ~~~~~~~~~l~~L~~L~ 196 (202)
.+..+++|+.|+
T Consensus 232 -----~l~~l~~L~~L~ 243 (487)
T 3oja_A 232 -----ALRFSQNLEHFD 243 (487)
T ss_dssp -----TCCCCTTCCEEE
T ss_pred -----hhccCCCCCEEE
Confidence 245566666654
No 103
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=7.2e-14 Score=122.57 Aligned_cols=149 Identities=12% Similarity=0.040 Sum_probs=100.6
Q ss_pred CCCCceEEEccCccccccch--hhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCC-CcEEE
Q psy14661 43 PISEAKEVGLQMQFIEKMDS--SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAET-LEELW 119 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~--~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-L~~L~ 119 (202)
.+++|+.|++++|.+..+|. .+..+++|+.|++++|.++.++.+..+++|++|++++|.++.+|.....+++ |+.|+
T Consensus 546 ~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~ 625 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLG 625 (876)
T ss_dssp TTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEE
T ss_pred ccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEE
Confidence 45567788888887777777 6777888888888888877657777777888888888887776654444466 88888
Q ss_pred cccccCCCCCC-CCCCC--CccEEEccCCcccCccc-c-ccCC--CCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCc
Q psy14661 120 VSYNYIEKTKG-IGVMR--KLKVLYMSNNLVKEWAE-F-VKLG--ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192 (202)
Q Consensus 120 l~~n~l~~~~~-~~~~~--~L~~L~l~~n~l~~~~~-~-~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L 192 (202)
+++|.++.+|. +.... +|+.|++++|.+.+... + ..+. .+++|+.|++++|.+...+.. .+..+++|
T Consensus 626 Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~------~~~~l~~L 699 (876)
T 4ecn_A 626 FSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE------LFATGSPI 699 (876)
T ss_dssp CCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH------HHHTTCCC
T ss_pred CcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH------HHccCCCC
Confidence 88888777763 44333 47777777777755211 0 0111 334778888888877765421 44567777
Q ss_pred ccccC
Q psy14661 193 KKLDG 197 (202)
Q Consensus 193 ~~L~~ 197 (202)
+.|+-
T Consensus 700 ~~L~L 704 (876)
T 4ecn_A 700 STIIL 704 (876)
T ss_dssp SEEEC
T ss_pred CEEEC
Confidence 76653
No 104
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=9.1e-15 Score=128.22 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCCCceEEEccCccccc------------------cchhhc--cCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc
Q psy14661 43 PISEAKEVGLQMQFIEK------------------MDSSLA--VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN 100 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~------------------l~~~l~--~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n 100 (202)
.+++|+.|++++|.+.. +|..+. .+++|+.|++++|.+.+. ..+..+++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 45556666666666554 555544 666666666666654443 44555555666666555
Q ss_pred c-ccc--cCCcccc-------cCCCcEEEcccccCCCCCC---CCCCCCccEEEccCCcccCccccccCCCCCcceEEEe
Q psy14661 101 N-IKS--FAGLEPL-------AETLEELWVSYNYIEKTKG---IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVF 167 (202)
Q Consensus 101 ~-l~~--~~~~~~~-------~~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l 167 (202)
+ ++. +|..... +++|+.|++++|.++.+|. ++.+++|+.|++++|.++.++ .++.+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEEC
Confidence 4 442 3321111 1255555555555555543 445555555555555555332 3445555555555
Q ss_pred cCCcCC
Q psy14661 168 CGNPLV 173 (202)
Q Consensus 168 ~~n~~~ 173 (202)
++|.+.
T Consensus 603 s~N~l~ 608 (876)
T 4ecn_A 603 DYNQIE 608 (876)
T ss_dssp CSSCCS
T ss_pred cCCccc
Confidence 555554
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.52 E-value=1.2e-13 Score=116.09 Aligned_cols=134 Identities=17% Similarity=0.145 Sum_probs=73.5
Q ss_pred CCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCc---------------
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGL--------------- 108 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~--------------- 108 (202)
+++++.|++++|.+..+| ..+++|+.|++++|.++.++.+.. +|++|++++|.++.+|..
T Consensus 79 ~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLT 153 (571)
T ss_dssp CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccC
Confidence 456888888888877777 345677777777777766533332 555555555555544430
Q ss_pred --ccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcc-------eEEEecCCcCCCCCCch
Q psy14661 109 --EPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL-------IDLVFCGNPLVEGMDDP 179 (202)
Q Consensus 109 --~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L-------~~l~l~~n~~~~~~~~~ 179 (202)
...+++|+.|++++|.++.+|.+. ++|+.|++++|.++.++. +.. +| +.|++++|.++..+.
T Consensus 154 ~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-- 224 (571)
T 3cvr_A 154 MLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE-- 224 (571)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG--
T ss_pred cCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH--
Confidence 001234444445544444444422 455566666665555433 222 44 677777777766542
Q ss_pred hhHHHHHHhCCCccccc
Q psy14661 180 LYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 180 ~~~~~~~~~l~~L~~L~ 196 (202)
.+..+++|+.|+
T Consensus 225 -----~l~~l~~L~~L~ 236 (571)
T 3cvr_A 225 -----NILSLDPTCTII 236 (571)
T ss_dssp -----GGGGSCTTEEEE
T ss_pred -----HHhcCCCCCEEE
Confidence 234477777655
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=3.1e-14 Score=123.07 Aligned_cols=114 Identities=24% Similarity=0.182 Sum_probs=87.6
Q ss_pred chhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCC-CCCCCCCcc
Q psy14661 61 DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK-GIGVMRKLK 138 (202)
Q Consensus 61 ~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~L~ 138 (202)
+..+..++.|+.|++++|.+..+ ..+..+++|++|++++|.++.+|..+..+++|+.|+|++|.++.+| .++.+++|+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence 44477788888888888888877 5666788888888888888877765566678888888888888887 577888888
Q ss_pred EEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 139 VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 139 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.|++++|.++.++. .++.+++|+.|++++|.++...
T Consensus 297 ~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 297 YFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp EEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHH
T ss_pred EEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCC
Confidence 88888888887654 5788888888888888887654
No 107
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.51 E-value=8.3e-14 Score=118.77 Aligned_cols=133 Identities=19% Similarity=0.120 Sum_probs=92.6
Q ss_pred CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc-cC-CCC-------CCCCcEEEccCccccccCCccc--
Q psy14661 43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI-NG-LSG-------LKKLKVLSLARNNIKSFAGLEP-- 110 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~-~~-~~~-------l~~L~~L~l~~n~l~~~~~~~~-- 110 (202)
...+++.|++++|.+..+|.. +..+++|+.|++++|.++.+ .. +.. +++|++|++++|.++.++....
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~ 510 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence 344688888888887777766 55578888888888888765 22 222 2278888888888887775443
Q ss_pred ccCCCcEEEcccccCCCCC-CCCCCCCccEEEcc------CCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 111 LAETLEELWVSYNYIEKTK-GIGVMRKLKVLYMS------NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 111 ~~~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~------~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.+++|+.|++++|.++.+| .+..+++|+.|+++ +|.+... .+..+..+++|+.|++++|.+...+
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ip 582 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPEGITLCPSLTQLQIGSNDIRKVN 582 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc-ChHHHhcCCCCCEEECCCCcCCccC
Confidence 5578888888888888776 46677888888884 3444431 2246667788888888888886654
No 108
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=2.5e-13 Score=111.51 Aligned_cols=104 Identities=20% Similarity=0.239 Sum_probs=64.8
Q ss_pred CCCceEEEccCccccccchhhc----------------c-CCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccC
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLA----------------V-LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFA 106 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~----------------~-l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~ 106 (202)
+++++.|++++|.+..+|..+. . .++|++|++++|.++.++.+..+++|++|++++|.++.++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccC
Confidence 4456666666666555543210 1 1466666666666666655666777777777777776655
Q ss_pred CcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCc
Q psy14661 107 GLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEW 150 (202)
Q Consensus 107 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 150 (202)
... ++|++|++++|.++.+|.++.+++|+.|++++|.++++
T Consensus 170 ~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC
T ss_pred CCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC
Confidence 322 46777777777777666666666677666666666554
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.2e-13 Score=96.96 Aligned_cols=109 Identities=23% Similarity=0.278 Sum_probs=95.2
Q ss_pred CCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
...+++++.|++++|.+..++.. +..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. ....+++|+
T Consensus 24 ~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLK 103 (177)
T ss_dssp TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccC
Confidence 34567899999999999888875 78999999999999999988 447899999999999999998774 345568999
Q ss_pred EEEcccccCCCCCC--CCCCCCccEEEccCCcccC
Q psy14661 117 ELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKE 149 (202)
Q Consensus 117 ~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~ 149 (202)
.|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 104 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 104 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999999873 6789999999999999875
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.50 E-value=1.8e-13 Score=99.69 Aligned_cols=109 Identities=21% Similarity=0.202 Sum_probs=95.5
Q ss_pred CCCCCceEEEccCccccccchh--hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 42 IPISEAKEVGLQMQFIEKMDSS--LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 42 ~~~~~l~~L~l~~~~i~~l~~~--l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
..+.+++.|++++|.+..+++. +..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus 26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK 105 (192)
T ss_dssp CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 3455899999999999998874 89999999999999999998 678999999999999999998763 344558999
Q ss_pred EEEcccccCCCC-C-CCCCCCCccEEEccCCcccCc
Q psy14661 117 ELWVSYNYIEKT-K-GIGVMRKLKVLYMSNNLVKEW 150 (202)
Q Consensus 117 ~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~n~l~~~ 150 (202)
.|++++|.++.+ | .+..+++|+.|++++|.+...
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 999999999986 4 588999999999999998763
No 111
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.49 E-value=4.8e-13 Score=109.90 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 122 (202)
.+++++.|++++|.+..+| +..+++|++|++++|.+++++ +..+++|++|++++|.++.++ ...+++|+.|++++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence 4566777777777766664 666677777777777766653 556666666666666666543 22335566666666
Q ss_pred ccCCCC
Q psy14661 123 NYIEKT 128 (202)
Q Consensus 123 n~l~~~ 128 (202)
|.++.+
T Consensus 137 N~l~~l 142 (457)
T 3bz5_A 137 NTLTEI 142 (457)
T ss_dssp SCCSCC
T ss_pred Ccccee
Confidence 555543
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=6.7e-14 Score=109.25 Aligned_cols=133 Identities=19% Similarity=0.198 Sum_probs=107.1
Q ss_pred hhcCCCCCCceEEEccCccccc---cchh--hccCCCCCEEECCCCCCcCcc-----CCCCCCCCcEEEccCcccccc-C
Q psy14661 38 EENGIPISEAKEVGLQMQFIEK---MDSS--LAVLTNCEKLSLSTNMIEKIN-----GLSGLKKLKVLSLARNNIKSF-A 106 (202)
Q Consensus 38 ~~~~~~~~~l~~L~l~~~~i~~---l~~~--l~~l~~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~l~~~-~ 106 (202)
+.....+++|+.|++++|.+.. ++.. +..+++|++|++++|.++.++ -+..+++|++|++++|.++.. |
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 3344568889999999998543 4333 468999999999999998762 246789999999999999876 4
Q ss_pred Cccccc---CCCcEEEcccccCCCCCC-CCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCC
Q psy14661 107 GLEPLA---ETLEELWVSYNYIEKTKG-IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175 (202)
Q Consensus 107 ~~~~~~---~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 175 (202)
.....+ ++|+.|++++|.++.+|. + .++|+.|++++|.+++++. +..+++|+.|++++|++++.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSCC
T ss_pred hhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCCC
Confidence 333333 699999999999999884 4 3799999999999998754 57789999999999999764
No 113
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=9.8e-13 Score=93.99 Aligned_cols=105 Identities=19% Similarity=0.219 Sum_probs=51.9
Q ss_pred eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccC
Q psy14661 48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125 (202)
Q Consensus 48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l 125 (202)
+.+++++|.+..+|..+ .++++.|++++|.++.+ ..|..+++|++|++++|.++.++..
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----------------- 72 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG----------------- 72 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----------------
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-----------------
Confidence 44555555555555433 24455555555555544 2344444444444444444443321
Q ss_pred CCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 126 EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 126 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.|..+++|+.|++++|.++.++. ..+..+++|++|++.+|++.+.+
T Consensus 73 ----~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 73 ----VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp ----TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTB
T ss_pred ----hccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCc
Confidence 13455555555555555554432 23455555555555555555554
No 114
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=6.3e-13 Score=95.39 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=52.2
Q ss_pred eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCcEEEccccc
Q psy14661 48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLEELWVSYNY 124 (202)
Q Consensus 48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~~L~l~~n~ 124 (202)
+.++++++.++.+|..+. ++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665432 5566666666666655 345555555555555555555442 22233455555555555
Q ss_pred CCCCC-C-CCCCCCccEEEccCCccc
Q psy14661 125 IEKTK-G-IGVMRKLKVLYMSNNLVK 148 (202)
Q Consensus 125 l~~~~-~-~~~~~~L~~L~l~~n~l~ 148 (202)
++.++ . +..+++|+.|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55444 1 444455555555555444
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.1e-13 Score=116.51 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=103.7
Q ss_pred CceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccccc
Q psy14661 46 EAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY 124 (202)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 124 (202)
.++.|++++|.+..+|. +..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.+| ....+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 58999999999999998 99999999999999999988 78999999999999999999988 44555899999999999
Q ss_pred CCCC--C-CCCCCCCccEEEccCCcccCcccc--ccCCCCCcceEEEe
Q psy14661 125 IEKT--K-GIGVMRKLKVLYMSNNLVKEWAEF--VKLGECPSLIDLVF 167 (202)
Q Consensus 125 l~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~l~l 167 (202)
++++ | .++.+++|+.|++++|.+++.+.. .....+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9987 6 588999999999999999876531 12234778888764
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=1.1e-12 Score=107.69 Aligned_cols=121 Identities=18% Similarity=0.259 Sum_probs=66.7
Q ss_pred CCceEEEccCccccccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccCCcccccCCCcEEEccccc
Q psy14661 45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY 124 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 124 (202)
++++.|++++|.+..+|. +..+++|+.|++++|.++.++.. ..+|++|++++|.++.++.+ ..+++|+.|++++|.
T Consensus 131 ~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~~~-~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELPEL-QNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC-TTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCCCcc-cCCCCCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCccc-cCCCCCCEEECCCCc
Confidence 578888888888777774 77888888888888877765221 13566666666665555432 222455555555555
Q ss_pred CCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCC
Q psy14661 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174 (202)
Q Consensus 125 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~ 174 (202)
++++|.. .++|+.|++++|.+..++ .++.+++|+++++++|.++.
T Consensus 207 l~~l~~~--~~~L~~L~l~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 207 LKKLPDL--PLSLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCCC--CTTCCEEECCSSCCSSCC---CCTTCTTCCEEECCSSCCSS
T ss_pred CCcCCCC--cCcccEEECcCCcCCccc---ccCCCCCCCEEECCCCcCCc
Confidence 5444321 124444444444444332 13344444444444444433
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1.4e-13 Score=115.79 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=89.0
Q ss_pred CCCceEEEccCccccccchhhc------------------cCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCcccccc
Q psy14661 44 ISEAKEVGLQMQFIEKMDSSLA------------------VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF 105 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~~l~------------------~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~ 105 (202)
+++|+.|++++|.+..+|. +. .+++|+.|++++|.++.++. .+++|++|++++|.++.+
T Consensus 99 l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 99 PASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCC
T ss_pred cCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCc
Confidence 4556666666665554444 22 34556666666666665533 456788888888888887
Q ss_pred CCcccccCCCcEEEcccccCCCCCCCCCCCCc-------cEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 106 AGLEPLAETLEELWVSYNYIEKTKGIGVMRKL-------KVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 106 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
|. +. ++|+.|++++|.++.+|.+.. +| +.|++++|.++.++. .+..+++|+.|++++|++++..
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLESLPAVPV--RNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCSSCCCCC----------CCEEEECCSSCCCCCCG--GGGGSCTTEEEECCSSSCCHHH
T ss_pred ch-hh--CCCCEEECcCCCCCchhhHHH--hhhcccccceEEecCCCcceecCH--HHhcCCCCCEEEeeCCcCCCcC
Confidence 76 33 799999999999999887433 67 999999999998765 5667999999999999998765
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=1.3e-14 Score=114.21 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=56.6
Q ss_pred CCCceEEEccCccccc--cchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc-cccc--cCCcccccCCCc
Q psy14661 44 ISEAKEVGLQMQFIEK--MDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN-NIKS--FAGLEPLAETLE 116 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~--l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n-~l~~--~~~~~~~~~~L~ 116 (202)
+++++.|++++|.+.. ++..+..+++|++|++++|.+++. ..+..+++|++|++++| .++. ++.....+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4557777777776543 555566677777777777766643 44555666666666666 4542 233233345566
Q ss_pred EEEcccc-cCCC--CC-CCCCCC-CccEEEccCC
Q psy14661 117 ELWVSYN-YIEK--TK-GIGVMR-KLKVLYMSNN 145 (202)
Q Consensus 117 ~L~l~~n-~l~~--~~-~~~~~~-~L~~L~l~~n 145 (202)
.|++++| .+++ ++ .+..++ +|+.|++++|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6666665 5443 22 133344 4555555544
No 119
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=1e-12 Score=93.89 Aligned_cols=87 Identities=22% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCCCCCceEEEccCccccccch-hhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccCC-cccccCCCc
Q psy14661 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG-LEPLAETLE 116 (202)
Q Consensus 41 ~~~~~~l~~L~l~~~~i~~l~~-~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~L~ 116 (202)
...+.+++.|++++|.+..+++ .+..+++|+.|++++|.++.+ ..|..+++|++|++++|.++.++. .+..+++|+
T Consensus 26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 3446789999999999999855 499999999999999999998 457889999999999999988773 355557888
Q ss_pred EEEcccccCCC
Q psy14661 117 ELWVSYNYIEK 127 (202)
Q Consensus 117 ~L~l~~n~l~~ 127 (202)
.|++++|.++-
T Consensus 106 ~L~L~~N~~~c 116 (170)
T 3g39_A 106 HIWLLNNPWDC 116 (170)
T ss_dssp EEECCSSCBCT
T ss_pred EEEeCCCCCCC
Confidence 88888887654
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.4e-12 Score=93.62 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=91.1
Q ss_pred CCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCCC--CCCCCCccEEEccC
Q psy14661 69 NCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSN 144 (202)
Q Consensus 69 ~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 144 (202)
.-+.+++++|.++.+ ..+. ++|++|++++|.++.++ ..+..+++|+.|++++|.++.+|. |..+++|+.|++++
T Consensus 13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 347899999999988 4443 78999999999999875 455566899999999999999883 68999999999999
Q ss_pred CcccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 145 NLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 145 n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
|.++.++. ..+..+++|++|++.+|++.+.+.
T Consensus 91 N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 99998754 458889999999999999998874
No 121
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.43 E-value=7.9e-13 Score=116.08 Aligned_cols=141 Identities=18% Similarity=0.099 Sum_probs=116.9
Q ss_pred eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccc-ccc-CCcccccCCCcEEEcccc
Q psy14661 48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI-KSF-AGLEPLAETLEELWVSYN 123 (202)
Q Consensus 48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~~~L~~L~l~~n 123 (202)
..++.+++++..+|. ..++++.|++++|.++.+ ..|..+++|++|++++|.. ..+ +..+..+++|+.|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 457788888999998 458999999999999987 7899999999999999944 445 355566689999999999
Q ss_pred cCCCC-C-CCCCCCCccEEEccCCcccCc-cccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 124 YIEKT-K-GIGVMRKLKVLYMSNNLVKEW-AEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 124 ~l~~~-~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.++.+ | .+..+++|++|++++|.+.+. +....++.+++|++|++++|.+....+.. .++.+++|++|+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-----~~~~L~~L~~L~ 154 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP-----SFGKLNSLKSID 154 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCG-----GGGTCSSCCEEE
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccch-----hHhhCCCCCEEE
Confidence 99986 4 589999999999999999862 22234889999999999999998876432 467899999877
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=1.5e-12 Score=110.67 Aligned_cols=70 Identities=23% Similarity=0.174 Sum_probs=41.2
Q ss_pred CCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCc
Q psy14661 113 ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192 (202)
Q Consensus 113 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L 192 (202)
++|+.|++++|.++.+| ..+++|+.|++++|.++.++. .+++|+.|++++|.++..+ . .+..+++|
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp-~------~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP-E------SLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC-G------GGGGSCTT
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC-H------HHhhcccc
Confidence 34555555555555544 234556666666666665432 4566777777777777554 1 35667777
Q ss_pred cccc
Q psy14661 193 KKLD 196 (202)
Q Consensus 193 ~~L~ 196 (202)
+.|+
T Consensus 287 ~~L~ 290 (622)
T 3g06_A 287 TTVN 290 (622)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7655
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.42 E-value=6.3e-13 Score=114.92 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=99.3
Q ss_pred cCCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEE
Q psy14661 40 NGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118 (202)
Q Consensus 40 ~~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 118 (202)
....+..|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+ ..|..+++|++|++++|.++.+|..+..+++|+.|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 34567889999999999999998888999999999999999988 77899999999999999999998766777999999
Q ss_pred EcccccCCCCC-CCCCCCCccEEEccCCcccC
Q psy14661 119 WVSYNYIEKTK-GIGVMRKLKVLYMSNNLVKE 149 (202)
Q Consensus 119 ~l~~n~l~~~~-~~~~~~~L~~L~l~~n~l~~ 149 (202)
++++|.++.+| .++.+++|+.|++++|.++.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 99999999998 58999999999999999986
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=1.1e-13 Score=111.14 Aligned_cols=39 Identities=21% Similarity=0.105 Sum_probs=22.6
Q ss_pred CCCCceEEEccCccccc-----cchhhccCCCCCEEECCCCCCc
Q psy14661 43 PISEAKEVGLQMQFIEK-----MDSSLAVLTNCEKLSLSTNMIE 81 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~-----l~~~l~~l~~L~~L~l~~n~i~ 81 (202)
..++|+.|++++|.++. ++..+..+++|+.|++++|.++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 34556666666666444 4445555666666666666554
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.39 E-value=9.5e-13 Score=111.81 Aligned_cols=80 Identities=29% Similarity=0.266 Sum_probs=69.1
Q ss_pred CCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecC
Q psy14661 90 KKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169 (202)
Q Consensus 90 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~ 169 (202)
++|++|++++|.++.++ ..+++|+.|++++|.++.+|. .+++|+.|++++|.++.++. .+..+++|+.|++++
T Consensus 221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~--~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCG--GGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCH--HHhhccccCEEEecC
Confidence 67888899988888776 334789999999999999887 67899999999999998754 688999999999999
Q ss_pred CcCCCCC
Q psy14661 170 NPLVEGM 176 (202)
Q Consensus 170 n~~~~~~ 176 (202)
|+++...
T Consensus 294 N~l~~~~ 300 (622)
T 3g06_A 294 NPLSERT 300 (622)
T ss_dssp CCCCHHH
T ss_pred CCCCCcC
Confidence 9998654
No 126
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=1e-12 Score=104.31 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=81.6
Q ss_pred CCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc---cCCCCCCCCcE-EEccCccccccC-CcccccCCCc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKV-LSLARNNIKSFA-GLEPLAETLE 116 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~---~~~~~l~~L~~-L~l~~n~l~~~~-~~~~~~~~L~ 116 (202)
.+.+++.|+|++|.++.+|+. |..+++|+.|++++|.+.+. ..|..+++++. +.+..|+++.++ ..+..+++|+
T Consensus 28 l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 28 LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 456788888888888888864 78888888888888876442 23444444432 233344444433 2223334444
Q ss_pred EEEcccccCCCCC---------------------------CCCCC-CCccEEEccCCcccCccc----------------
Q psy14661 117 ELWVSYNYIEKTK---------------------------GIGVM-RKLKVLYMSNNLVKEWAE---------------- 152 (202)
Q Consensus 117 ~L~l~~n~l~~~~---------------------------~~~~~-~~L~~L~l~~n~l~~~~~---------------- 152 (202)
.|++++|.++.++ .+..+ ..++.|++++|.++.++.
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 4444444433221 01111 234455555555544321
Q ss_pred -------cccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCcccccC
Q psy14661 153 -------FVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197 (202)
Q Consensus 153 -------~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~~ 197 (202)
...+..+++|+.|++++|.++..++. .+..+++|+.++.
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~------~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSY------GLENLKKLRARST 233 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS------SCTTCCEEECTTC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChh------hhccchHhhhccC
Confidence 13456667777888888877777643 3445555554443
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.9e-12 Score=102.63 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=95.9
Q ss_pred eEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccc-cC-CcccccCCCcE-EEccc
Q psy14661 48 KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-FA-GLEPLAETLEE-LWVSY 122 (202)
Q Consensus 48 ~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~~~~~L~~-L~l~~ 122 (202)
++++.++++++.+|..+ .+++++|++++|.|+.+ ..|..+++|++|++++|.+.. ++ ..+..++++.+ +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888899999865 46899999999999998 468999999999999999754 55 34444466654 66677
Q ss_pred ccCCCCC--CCCCCCCccEEEccCCcccCcccc------------------------ccCCCC-CcceEEEecCCcCCCC
Q psy14661 123 NYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEF------------------------VKLGEC-PSLIDLVFCGNPLVEG 175 (202)
Q Consensus 123 n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~------------------------~~~~~l-~~L~~l~l~~n~~~~~ 175 (202)
|.++.++ .|..+++|+.|++++|.+..++.. ..+..+ ..++.+++++|.++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 8898875 488999999999999987654321 011222 2477888888888766
Q ss_pred C
Q psy14661 176 M 176 (202)
Q Consensus 176 ~ 176 (202)
+
T Consensus 170 ~ 170 (350)
T 4ay9_X 170 H 170 (350)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=7.2e-13 Score=105.55 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=83.2
Q ss_pred CceEEEccCccccccch-hhccC-----CCCCEEECCCCCCcCc--c----CCCCC-CCCcEEEccCccccccCC--c--
Q psy14661 46 EAKEVGLQMQFIEKMDS-SLAVL-----TNCEKLSLSTNMIEKI--N----GLSGL-KKLKVLSLARNNIKSFAG--L-- 108 (202)
Q Consensus 46 ~l~~L~l~~~~i~~l~~-~l~~l-----~~L~~L~l~~n~i~~~--~----~~~~l-~~L~~L~l~~n~l~~~~~--~-- 108 (202)
+++.|++++|.++.... .+..+ ++|+.|++++|.++.. . .+..+ ++|++|++++|.++..+. +
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 57777777776655432 23332 6777777777776654 1 23344 567777777777665431 1
Q ss_pred -ccc-cCCCcEEEcccccCCCCC------CCCCCC-CccEEEccCCcccCcccc---ccCCCC-CcceEEEecCCcCCCC
Q psy14661 109 -EPL-AETLEELWVSYNYIEKTK------GIGVMR-KLKVLYMSNNLVKEWAEF---VKLGEC-PSLIDLVFCGNPLVEG 175 (202)
Q Consensus 109 -~~~-~~~L~~L~l~~n~l~~~~------~~~~~~-~L~~L~l~~n~l~~~~~~---~~~~~l-~~L~~l~l~~n~~~~~ 175 (202)
... ..+|+.|++++|.+++.. .+...+ +|+.|++++|.+++.... ..+..+ ++|++|++++|.+++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 111 246777777777766422 123333 777777777777653321 123344 4777777777777665
Q ss_pred CCchhhHHHHHHh-CCCccccc
Q psy14661 176 MDDPLYKSEVKKR-LPNLKKLD 196 (202)
Q Consensus 176 ~~~~~~~~~~~~~-l~~L~~L~ 196 (202)
. .......+.. .++|++||
T Consensus 212 ~--~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 212 S--YAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp C--HHHHHHHHHHSCTTCCEEE
T ss_pred H--HHHHHHHHhcCCCCceEEE
Confidence 4 2323333444 34677665
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=1.2e-12 Score=102.84 Aligned_cols=149 Identities=20% Similarity=0.156 Sum_probs=84.6
Q ss_pred CCceEEEccCccccccchhhccCCCCCEEECCCCCCcC--c-cCCCCCCCCcEEEccCccccc-cCCcccccCCCcEEEc
Q psy14661 45 SEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEK--I-NGLSGLKKLKVLSLARNNIKS-FAGLEPLAETLEELWV 120 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~--~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~L~~L~l 120 (202)
..++.+++++|.+...++.+..+++|+.|++++|.++. + ..+..+++|++|++++|.++. .+.....+++|+.|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 34555555555555444445556677777777766654 2 345566677777777766652 2222223466777777
Q ss_pred ccc-cCCC--CCC-CCCCCCccEEEccCC-cccCccccccCCCCC-cceEEEecCCc--CCCCCCchhhHHHHHHhCCCc
Q psy14661 121 SYN-YIEK--TKG-IGVMRKLKVLYMSNN-LVKEWAEFVKLGECP-SLIDLVFCGNP--LVEGMDDPLYKSEVKKRLPNL 192 (202)
Q Consensus 121 ~~n-~l~~--~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~-~L~~l~l~~n~--~~~~~~~~~~~~~~~~~l~~L 192 (202)
++| .++. ++. +..+++|+.|++++| .+++......+..++ +|++|++++|. +++ ......+..+++|
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-----~~l~~~~~~~~~L 224 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-----SDLSTLVRRCPNL 224 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-----HHHHHHHHHCTTC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-----HHHHHHHhhCCCC
Confidence 776 4553 332 455667777777777 666532223455666 77777777773 321 1112255667777
Q ss_pred ccccCc
Q psy14661 193 KKLDGE 198 (202)
Q Consensus 193 ~~L~~~ 198 (202)
++|+-.
T Consensus 225 ~~L~l~ 230 (336)
T 2ast_B 225 VHLDLS 230 (336)
T ss_dssp SEEECT
T ss_pred CEEeCC
Confidence 776643
No 130
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=8e-13 Score=105.28 Aligned_cols=150 Identities=17% Similarity=0.145 Sum_probs=81.6
Q ss_pred CCceEEEccCccccccchh-----hccC-CCCCEEECCCCCCcCc--c----CCCC-CCCCcEEEccCccccccC-----
Q psy14661 45 SEAKEVGLQMQFIEKMDSS-----LAVL-TNCEKLSLSTNMIEKI--N----GLSG-LKKLKVLSLARNNIKSFA----- 106 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~-----l~~l-~~L~~L~l~~n~i~~~--~----~~~~-l~~L~~L~l~~n~l~~~~----- 106 (202)
++++.|++++|.+...+.. +..+ ++|+.|++++|.++.. . .+.. .++|++|++++|.++...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 6677788877776654432 4444 6777777777777655 1 2333 246777777777776321
Q ss_pred CcccccC-CCcEEEcccccCCCCC------CCCCC-CCccEEEccCCcccCccc---cccCCC-CCcceEEEecCCcCCC
Q psy14661 107 GLEPLAE-TLEELWVSYNYIEKTK------GIGVM-RKLKVLYMSNNLVKEWAE---FVKLGE-CPSLIDLVFCGNPLVE 174 (202)
Q Consensus 107 ~~~~~~~-~L~~L~l~~n~l~~~~------~~~~~-~~L~~L~l~~n~l~~~~~---~~~~~~-l~~L~~l~l~~n~~~~ 174 (202)
......+ +|+.|++++|.++..+ .+... ++|+.|++++|.+++... ...+.. .++|++|++++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 1111122 6777777777766543 12233 467777777776665211 012222 3466677777666666
Q ss_pred CCCchhhHHHHHHhCCCccccc
Q psy14661 175 GMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 175 ~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.. .......+..+++|++|+
T Consensus 240 ~~--~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 240 PS--LENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp CC--HHHHHHTTTTTTTCSEEE
T ss_pred HH--HHHHHHHHhcCCCccEEE
Confidence 54 222222334444554443
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=1.6e-14 Score=105.77 Aligned_cols=130 Identities=28% Similarity=0.316 Sum_probs=107.0
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcc
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 121 (202)
.+++++.|++++|.+..+| .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++.+ ..+++|+.|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~-~~l~~L~~L~l~ 123 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGI-EKLVNLRVLYMS 123 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHH-HHHHHSSEEEES
T ss_pred cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCcc-ccCCCCCEEECC
Confidence 4678999999999999998 799999999999999999987 4455568999999999999987743 344899999999
Q ss_pred cccCCCCC---CCCCCCCccEEEccCCcccCccc---------cccCCCCCcceEEEecCCcCCCCC
Q psy14661 122 YNYIEKTK---GIGVMRKLKVLYMSNNLVKEWAE---------FVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 122 ~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~---------~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
+|.++.++ .+..+++|+.|++++|.+.+... ...+..+++|+.++ +++++...
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 99999865 37889999999999999876421 12367788999887 77776653
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.28 E-value=1.1e-12 Score=105.17 Aligned_cols=130 Identities=19% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCceEEEccCcccc--ccc---hhhccCCCCCEEECCCCCCcC-----c-c-CCCCCCCCcEEEccCcccc-----ccCC
Q psy14661 45 SEAKEVGLQMQFIE--KMD---SSLAVLTNCEKLSLSTNMIEK-----I-N-GLSGLKKLKVLSLARNNIK-----SFAG 107 (202)
Q Consensus 45 ~~l~~L~l~~~~i~--~l~---~~l~~l~~L~~L~l~~n~i~~-----~-~-~~~~l~~L~~L~l~~n~l~-----~~~~ 107 (202)
++|+.|++++|.+. .++ ..+..+++|+.|++++|.++. + + .+..+++|++|++++|.++ .++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 44555555555543 223 234455556666666655551 1 2 4555555666666666552 2222
Q ss_pred cccccCCCcEEEcccccCCCC-----C-CC--CCCCCccEEEccCCcccC-----ccccccC-CCCCcceEEEecCCcCC
Q psy14661 108 LEPLAETLEELWVSYNYIEKT-----K-GI--GVMRKLKVLYMSNNLVKE-----WAEFVKL-GECPSLIDLVFCGNPLV 173 (202)
Q Consensus 108 ~~~~~~~L~~L~l~~n~l~~~-----~-~~--~~~~~L~~L~l~~n~l~~-----~~~~~~~-~~l~~L~~l~l~~n~~~ 173 (202)
....+++|+.|++++|.++.. + .+ +.+++|+.|++++|.+++ ++ ..+ ..+++|++|++++|+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~--~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK--TVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH--HHHHHHCTTCCEEECTTSBSC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH--HHHHhcCCCceEEEccCCcCC
Confidence 233335566666666655542 1 12 235556666666665554 21 122 33555666666666665
Q ss_pred CCC
Q psy14661 174 EGM 176 (202)
Q Consensus 174 ~~~ 176 (202)
...
T Consensus 317 ~~~ 319 (386)
T 2ca6_A 317 EED 319 (386)
T ss_dssp TTS
T ss_pred cch
Confidence 543
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=4.8e-12 Score=100.05 Aligned_cols=102 Identities=18% Similarity=0.277 Sum_probs=79.8
Q ss_pred eEEEccCc-cccccchhhccCCCCCEEECCC-CCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEccc
Q psy14661 48 KEVGLQMQ-FIEKMDSSLAVLTNCEKLSLST-NMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSY 122 (202)
Q Consensus 48 ~~L~l~~~-~i~~l~~~l~~l~~L~~L~l~~-n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~ 122 (202)
..++.+++ .+..+|. +..+++|+.|+|++ |.++.+ ..|..+++|++|++++|.++.++ ..+..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688887 7888888 88888899999986 888887 56888889999999999888766 3455568888888888
Q ss_pred ccCCCCC-C-CCCCCCccEEEccCCcccCcc
Q psy14661 123 NYIEKTK-G-IGVMRKLKVLYMSNNLVKEWA 151 (202)
Q Consensus 123 n~l~~~~-~-~~~~~~L~~L~l~~n~l~~~~ 151 (202)
|.++.+| . +..+. |+.|++.+|.+....
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence 8888876 2 44444 888888888876533
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=3.1e-11 Score=94.83 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCCceEEEccCcccc--------------------ccchh-hcc--------CCCCCEEECCCCCCcCc--cCCCCCCCC
Q psy14661 44 ISEAKEVGLQMQFIE--------------------KMDSS-LAV--------LTNCEKLSLSTNMIEKI--NGLSGLKKL 92 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~--------------------~l~~~-l~~--------l~~L~~L~l~~n~i~~~--~~~~~l~~L 92 (202)
+++|+.|+|++|.+. .+|.. |.. +++|+.+++.. .++.+ ..|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 677888888888876 34433 667 88888888888 77777 668888888
Q ss_pred cEEEccCccccccCC---------------c--------------c----------------------------------
Q psy14661 93 KVLSLARNNIKSFAG---------------L--------------E---------------------------------- 109 (202)
Q Consensus 93 ~~L~l~~n~l~~~~~---------------~--------------~---------------------------------- 109 (202)
+.++++.|.+..++. . +
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 888887776422110 0 0
Q ss_pred ----------------cccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcce-EEEecCC
Q psy14661 110 ----------------PLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI-DLVFCGN 170 (202)
Q Consensus 110 ----------------~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~l~l~~n 170 (202)
..+++|+.+++++|.++.++ .|..+.+|+.+++.+| +..++. ..+.+|.+|+ .+.+..
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-
Confidence 01467888888888888776 4777888888888776 555543 5666777777 777765
Q ss_pred cCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.++...+. .+..+++|+.++
T Consensus 284 ~l~~I~~~------aF~~c~~L~~l~ 303 (329)
T 3sb4_A 284 SVTAIEFG------AFMGCDNLRYVL 303 (329)
T ss_dssp TCCEECTT------TTTTCTTEEEEE
T ss_pred cceEEchh------hhhCCccCCEEE
Confidence 55554432 456666666654
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.22 E-value=3.1e-12 Score=104.62 Aligned_cols=154 Identities=21% Similarity=0.216 Sum_probs=97.8
Q ss_pred CCCceEEEccCcccc-----ccchhhccCCCCCEEECCCCCCcCc------cCCCCCC-CCcEEEccCccccc-----cC
Q psy14661 44 ISEAKEVGLQMQFIE-----KMDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLK-KLKVLSLARNNIKS-----FA 106 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~-----~l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~-~L~~L~l~~n~l~~-----~~ 106 (202)
+++++.|++++|.+. .++..+..+++|++|++++|.+++. ..+.... +|++|++++|.++. ++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 456888888888865 4556677788888888888887753 2232222 68888888888773 23
Q ss_pred CcccccCCCcEEEcccccCCCCC------C-CCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCCC
Q psy14661 107 GLEPLAETLEELWVSYNYIEKTK------G-IGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 107 ~~~~~~~~L~~L~l~~n~l~~~~------~-~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.....+++|+.|++++|.++... . ....++|+.|++++|.+++... ...+..+++|++|++++|.+.+..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 33444578888888888876421 1 2335578888888888776321 234556778888888888876543
Q ss_pred CchhhHHHHHHhCCCcccccCc
Q psy14661 177 DDPLYKSEVKKRLPNLKKLDGE 198 (202)
Q Consensus 177 ~~~~~~~~~~~~l~~L~~L~~~ 198 (202)
. ..+........++|++|+-.
T Consensus 187 ~-~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 187 V-RVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp H-HHHHHHHHHSCCCCCEEECT
T ss_pred H-HHHHHHHhcCCCCceEEEcc
Confidence 1 11111122235577776643
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=4.4e-11 Score=94.00 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=83.8
Q ss_pred CCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCcc-EEEccCCcccCccccccCCCCCcceE
Q psy14661 89 LKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLK-VLYMSNNLVKEWAEFVKLGECPSLID 164 (202)
Q Consensus 89 l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~ 164 (202)
+++|+.+++++|+++.++ ..+..+.+|+.+++.+| ++.++ .|..+.+|+ .+.+.+ .++.++. ..+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch-hhhhCCccCCE
Confidence 678999999999999888 45556689999999998 77776 589999999 999988 6777654 68999999999
Q ss_pred EEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 165 LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 165 l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
+++.+|.+....+. .+..+++|+.+.
T Consensus 302 l~l~~n~i~~I~~~------aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDE------LFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTT------TTCTTCCCCEEE
T ss_pred EEeCCCccCccchh------hhcCCcchhhhc
Confidence 99999999888754 678899998875
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.18 E-value=3.5e-12 Score=104.29 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=5.5
Q ss_pred CcceEEEecCCcC
Q psy14661 160 PSLIDLVFCGNPL 172 (202)
Q Consensus 160 ~~L~~l~l~~n~~ 172 (202)
++|++|++++|.+
T Consensus 341 ~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 341 RFLLELQISNNRL 353 (461)
T ss_dssp SSCCEEECCSSBC
T ss_pred CCccEEEccCCcc
Confidence 3444444444433
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=2.9e-10 Score=89.75 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=88.3
Q ss_pred CEEECCCC-CCcCccCCCCCCCCcEEEccC-ccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCC
Q psy14661 71 EKLSLSTN-MIEKINGLSGLKKLKVLSLAR-NNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNN 145 (202)
Q Consensus 71 ~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n 145 (202)
..++.+++ .++.++.+..+.+|++|++++ |.++.++ ..+..+++|+.|+|++|.++.++ .|..+++|+.|+|++|
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 45688888 899984499999999999996 9999887 45556689999999999999876 4789999999999999
Q ss_pred cccCccccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 146 ~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.++.++. ..+..++ |+.|++.+|++.+.+.
T Consensus 91 ~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSW-KTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence 9998764 3444444 9999999999998864
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=2.5e-12 Score=102.92 Aligned_cols=151 Identities=15% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCceEEEccCccccccch-----hhc-cCCCCCEEECCCCCCcCc--cCC-CCCCCCcEEEccCccccccC--Ccc---
Q psy14661 44 ISEAKEVGLQMQFIEKMDS-----SLA-VLTNCEKLSLSTNMIEKI--NGL-SGLKKLKVLSLARNNIKSFA--GLE--- 109 (202)
Q Consensus 44 ~~~l~~L~l~~~~i~~l~~-----~l~-~l~~L~~L~l~~n~i~~~--~~~-~~l~~L~~L~l~~n~l~~~~--~~~--- 109 (202)
...++.|++++|.+..... .+. ..++|+.|++++|.++.. ..+ ..+++|++|++++|.++... .+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3457777777777554322 122 225777777777777643 222 23446677777777665422 110
Q ss_pred -cccCCCcEEEcccccCCCCC------CCCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCCCCch
Q psy14661 110 -PLAETLEELWVSYNYIEKTK------GIGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEGMDDP 179 (202)
Q Consensus 110 -~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~~~~ 179 (202)
...++|+.|++++|.++... .+...++|++|++++|.+++.+. ...+...++|+.|++++|.+++.. .
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g--~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA--A 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--H
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--H
Confidence 11246777777777665421 23455667777777777665321 123445566777777777765543 2
Q ss_pred hhHHHHHHhCCCccccc
Q psy14661 180 LYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 180 ~~~~~~~~~l~~L~~L~ 196 (202)
......+..+++|++||
T Consensus 229 ~~l~~~L~~~~~L~~L~ 245 (372)
T 3un9_A 229 LALARAAREHPSLELLH 245 (372)
T ss_dssp HHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHhCCCCCEEe
Confidence 33333455666666655
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.10 E-value=2.6e-10 Score=86.95 Aligned_cols=116 Identities=28% Similarity=0.367 Sum_probs=88.0
Q ss_pred CCCCCCCcE--EEccCccccccCC----cccccCCCcEEEcccccCCCCCCC----CCCCCccEEEccCCcccCcccccc
Q psy14661 86 LSGLKKLKV--LSLARNNIKSFAG----LEPLAETLEELWVSYNYIEKTKGI----GVMRKLKVLYMSNNLVKEWAEFVK 155 (202)
Q Consensus 86 ~~~l~~L~~--L~l~~n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~ 155 (202)
+...+.|.. ++++.|....++. ....+++|+.|+|++|.+++++.+ ..+++|+.|+|++|.++++..+..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 333444444 5566665444332 122357999999999999987643 478999999999999999866666
Q ss_pred CCCCCcceEEEecCCcCCCCCC-chhhHHHHHHhCCCcccccCccCCC
Q psy14661 156 LGECPSLIDLVFCGNPLVEGMD-DPLYKSEVKKRLPNLKKLDGEVLPE 202 (202)
Q Consensus 156 ~~~l~~L~~l~l~~n~~~~~~~-~~~~~~~~~~~l~~L~~L~~~~~~~ 202 (202)
+..+ +|+.|++.+|+++...+ .+.|+..++..+|+|+.||+.+|+.
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p 263 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPP 263 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCC
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCC
Confidence 6666 89999999999986443 2578888999999999999998863
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.00 E-value=5.2e-11 Score=95.28 Aligned_cols=134 Identities=19% Similarity=0.115 Sum_probs=100.4
Q ss_pred CCCCceEEEccCccccccc--hhhccCCCCCEEECCCCCCcCc--cC----C-CCCCCCcEEEccCccccccC-----Cc
Q psy14661 43 PISEAKEVGLQMQFIEKMD--SSLAVLTNCEKLSLSTNMIEKI--NG----L-SGLKKLKVLSLARNNIKSFA-----GL 108 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~--~~l~~l~~L~~L~l~~n~i~~~--~~----~-~~l~~L~~L~l~~n~l~~~~-----~~ 108 (202)
..++++.|+|++|.++... .....+++|+.|++++|.++.. .. + ...++|++|++++|.++... ..
T Consensus 99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 4568999999999976522 2244567899999999999864 22 2 35678999999999987522 22
Q ss_pred ccccCCCcEEEcccccCCCCC------CCCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCCC
Q psy14661 109 EPLAETLEELWVSYNYIEKTK------GIGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 109 ~~~~~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
...+++|+.|++++|.+++.. .+...++|+.|++++|.+++.+. ...+..+++|++|++++|++++..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 233578999999999987532 35667899999999999987432 134456789999999999987653
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.83 E-value=3.7e-09 Score=88.89 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=50.1
Q ss_pred CCCCceEEEccCccccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccccCCcccc
Q psy14661 43 PISEAKEVGLQMQFIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPL 111 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 111 (202)
.+++|+.|++++|.+.. ++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+..++.....
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 35678888888887433 333456678888888888877632 2344567788888877776554433333
Q ss_pred cCCCcEEEcc
Q psy14661 112 AETLEELWVS 121 (202)
Q Consensus 112 ~~~L~~L~l~ 121 (202)
+++|+.|+++
T Consensus 242 ~~~L~~L~l~ 251 (592)
T 3ogk_B 242 AANLEEFCGG 251 (592)
T ss_dssp CTTCCEEEEC
T ss_pred hhHHHhhccc
Confidence 3555555554
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.75 E-value=1.6e-08 Score=84.97 Aligned_cols=56 Identities=5% Similarity=0.003 Sum_probs=34.5
Q ss_pred CCCCceEEEccCcccc-----ccchhhccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEcc
Q psy14661 43 PISEAKEVGLQMQFIE-----KMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLA 98 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~-----~l~~~l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~ 98 (202)
..++|+.|++++|.+. .++..+..+++|+.|++++|.+..+ ..+..+++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 3567888888887764 3444466778888888887776554 333334444444443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.75 E-value=4.1e-08 Score=79.22 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=33.8
Q ss_pred hhhhhhcCCCCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccC
Q psy14661 34 KKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLAR 99 (202)
Q Consensus 34 ~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~ 99 (202)
.......+..+.+|+.+++.+|.+..++...-.+.+|+.+.+..+ ++.+ ..|..+++|+.+.+..
T Consensus 169 ~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 169 EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 333334444555566666666555555544222455555555422 4444 4555666666666654
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.65 E-value=2.2e-08 Score=84.18 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=45.4
Q ss_pred CCCceEEEccCcc-ccc--cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCcc--ccc--cCCccc
Q psy14661 44 ISEAKEVGLQMQF-IEK--MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNN--IKS--FAGLEP 110 (202)
Q Consensus 44 ~~~l~~L~l~~~~-i~~--l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~--l~~--~~~~~~ 110 (202)
+++|+.|++++|. ++. ++..+..+++|++|++++|.+++. .-...+++|++|++++|. ++. +.....
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 4567777777773 443 444455677788888877776543 112255677777777665 211 111222
Q ss_pred ccCCCcEEEcccc
Q psy14661 111 LAETLEELWVSYN 123 (202)
Q Consensus 111 ~~~~L~~L~l~~n 123 (202)
.+++|+.|++++|
T Consensus 209 ~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 209 RCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECCTT
T ss_pred hCCCCcEEecCCC
Confidence 2356666666655
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=2.4e-07 Score=74.73 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=55.6
Q ss_pred CceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcc
Q psy14661 46 EAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVS 121 (202)
Q Consensus 46 ~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~ 121 (202)
+|+.+.+.. .+..++.. |..|++|+.+++..|.++.+ ..|. +.+|+.+.+..+ ++.++ ..+..+++|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 355555543 34444433 55666666666666666655 3333 455666666533 44433 223333455555554
Q ss_pred cccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661 122 YNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 122 ~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 172 (202)
.+ ++.++ .|.. .+|+.+.+. +.++.++. ..+.+|++|+.+.+.+|.+
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~-~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTNIAS-RAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEE-TTCCEECT-TTTTTCTTCCEEEEESSCC
T ss_pred CC-ccCcccccccc-CCccEEEeC-CCccEECh-hHhhCCCCCCEEEeCCccc
Confidence 42 22222 1222 334444432 22222222 3455555555555555443
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.57 E-value=9e-09 Score=86.53 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=94.4
Q ss_pred CCCceEEEccCcc-cccc---------------chhhccCCCCCEEECCCCCCcCc--cCCC-CCCCCcEEEccCc-ccc
Q psy14661 44 ISEAKEVGLQMQF-IEKM---------------DSSLAVLTNCEKLSLSTNMIEKI--NGLS-GLKKLKVLSLARN-NIK 103 (202)
Q Consensus 44 ~~~l~~L~l~~~~-i~~l---------------~~~l~~l~~L~~L~l~~n~i~~~--~~~~-~l~~L~~L~l~~n-~l~ 103 (202)
+++++.|+++++. +.++ +.....+++|++|++++|.+++. ..+. .+++|++|++.+| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 4568888888876 3222 11245678999999999888764 3443 5778999999888 554
Q ss_pred c--cCCcccccCCCcEEEcccccCCCCC-----C-CCCCCCccEEEccCCc--ccCccccccCCCCCcceEEEecCCcCC
Q psy14661 104 S--FAGLEPLAETLEELWVSYNYIEKTK-----G-IGVMRKLKVLYMSNNL--VKEWAEFVKLGECPSLIDLVFCGNPLV 173 (202)
Q Consensus 104 ~--~~~~~~~~~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~l~l~~n~~~ 173 (202)
. ++.....+++|+.|++++|.+++.. . ...+++|+.|++++|. +..-........+++|++|++.+|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 3344445688999999998876532 2 2366789999998886 322111112245788999998877211
Q ss_pred CCCCchhhHHHHHHhCCCccccc
Q psy14661 174 EGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 174 ~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.. ....+..+++|++|+
T Consensus 225 -----~~-l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 225 -----EK-LATLLQRAPQLEELG 241 (594)
T ss_dssp -----HH-HHHHHHHCTTCSEEE
T ss_pred -----HH-HHHHHhcCCcceEcc
Confidence 11 222556667776665
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.4e-08 Score=73.27 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=67.3
Q ss_pred hccCCCCCEEECCCC-CCcCc------cCCCCCCCCcEEEccCcccccc-----CCcccccCCCcEEEcccccCCCC---
Q psy14661 64 LAVLTNCEKLSLSTN-MIEKI------NGLSGLKKLKVLSLARNNIKSF-----AGLEPLAETLEELWVSYNYIEKT--- 128 (202)
Q Consensus 64 l~~l~~L~~L~l~~n-~i~~~------~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~~L~~L~l~~n~l~~~--- 128 (202)
+...+.|++|++++| .+... ..+...++|++|++++|.+..- .......+.|++|++++|.+++-
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 555666666666666 65532 3344455666666666666531 11112225677777777776642
Q ss_pred --C-CCCCCCCccEEEc--cCCcccCccc---cccCCCCCcceEEEecCCcCCC
Q psy14661 129 --K-GIGVMRKLKVLYM--SNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVE 174 (202)
Q Consensus 129 --~-~~~~~~~L~~L~l--~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~ 174 (202)
. .+...++|+.|++ ++|.+.+... ...+...+.|++|++++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 1 3556677888888 7788776321 1344556788899998888754
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=1.2e-07 Score=75.49 Aligned_cols=150 Identities=12% Similarity=0.068 Sum_probs=80.9
Q ss_pred CCCceEEEccCccc----------cccchhhccCCCCCEEECCCCCCcCccCCCCCCCCcEEEccCccccccC--Ccc-c
Q psy14661 44 ISEAKEVGLQMQFI----------EKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFA--GLE-P 110 (202)
Q Consensus 44 ~~~l~~L~l~~~~i----------~~l~~~l~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~-~ 110 (202)
+++|+.|.+..... ..+...+..+|+|+.|.+++|.--.+..+. +++|++|.+..+.++.-. .+. .
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 34677776654321 124444667778888888766311223332 677888887777664311 111 1
Q ss_pred ccCCCcEEEccc--cc------CCCCC-CC--CCCCCccEEEccCCcccCcc--ccccCCCCCcceEEEecCCcCCCCCC
Q psy14661 111 LAETLEELWVSY--NY------IEKTK-GI--GVMRKLKVLYMSNNLVKEWA--EFVKLGECPSLIDLVFCGNPLVEGMD 177 (202)
Q Consensus 111 ~~~~L~~L~l~~--n~------l~~~~-~~--~~~~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~ 177 (202)
.+|+|+.|+|+. +. +..+. .+ ..+++|++|++.+|.+.+.. .+.....+++|++|+++.|.+.+..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G- 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG- 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH-
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH-
Confidence 347788877753 21 11111 11 34678888888877766421 1122245677888888777766532
Q ss_pred chhhHHHHHHhCCCccccc
Q psy14661 178 DPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 178 ~~~~~~~~~~~l~~L~~L~ 196 (202)
.......+..+++|+.|+
T Consensus 296 -~~~L~~~L~~l~~L~~L~ 313 (362)
T 2ra8_A 296 -ARLLLDHVDKIKHLKFIN 313 (362)
T ss_dssp -HHHHHTTHHHHTTCSEEE
T ss_pred -HHHHHhhcccCCcceEEE
Confidence 111111234567777665
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=4.5e-08 Score=70.60 Aligned_cols=107 Identities=17% Similarity=0.049 Sum_probs=82.9
Q ss_pred CCCCceEEEccCc-cccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccc-----c
Q psy14661 43 PISEAKEVGLQMQ-FIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKS-----F 105 (202)
Q Consensus 43 ~~~~l~~L~l~~~-~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~-----~ 105 (202)
..+++++|++++| .++. +...+...++|++|++++|.|... ..+...++|++|++++|.++. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4677999999999 7544 555577889999999999999863 445566789999999999985 2
Q ss_pred CCcccccCCCcEEEc--ccccCCCCC------CCCCCCCccEEEccCCcccC
Q psy14661 106 AGLEPLAETLEELWV--SYNYIEKTK------GIGVMRKLKVLYMSNNLVKE 149 (202)
Q Consensus 106 ~~~~~~~~~L~~L~l--~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~ 149 (202)
.......+.|+.|++ +.|.++.-. .+...++|+.|++++|.+.+
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 223333468999999 889987521 24566899999999998865
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=5.3e-07 Score=71.75 Aligned_cols=131 Identities=12% Similarity=0.088 Sum_probs=89.6
Q ss_pred CCCCceEEEccCccccccchhhccCCCCCEEECCCCCCcCc--cCC--CCCCCCcEEEccC--cc------ccccCCcc-
Q psy14661 43 PISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGL--SGLKKLKVLSLAR--NN------IKSFAGLE- 109 (202)
Q Consensus 43 ~~~~l~~L~l~~~~i~~l~~~l~~l~~L~~L~l~~n~i~~~--~~~--~~l~~L~~L~l~~--n~------l~~~~~~~- 109 (202)
.+++|+.|.++++.--.++. +. +++|+.|++..+.++.- ..+ ..+++|++|.+.. +. +..+....
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred cCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 35689999999885223444 43 88999999998888753 333 3678899998753 22 11111111
Q ss_pred -cccCCCcEEEcccccCCCC-C----CCCCCCCccEEEccCCcccCccc---cccCCCCCcceEEEecCCcCCCC
Q psy14661 110 -PLAETLEELWVSYNYIEKT-K----GIGVMRKLKVLYMSNNLVKEWAE---FVKLGECPSLIDLVFCGNPLVEG 175 (202)
Q Consensus 110 -~~~~~L~~L~l~~n~l~~~-~----~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~l~l~~n~~~~~ 175 (202)
..+++|+.|++.+|.++.. + ....+++|++|+++.|.+.+... ...+..+++|+.|+++.|.+++.
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 2358999999999987641 1 22467899999999999887421 12234578999999999987653
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.2e-06 Score=66.68 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=56.1
Q ss_pred CCCCCcEEEccCccccccCC---cccccCCCcEEEcccccCCCCCCCCCCC--CccEEEccCCcccC-ccc-----cccC
Q psy14661 88 GLKKLKVLSLARNNIKSFAG---LEPLAETLEELWVSYNYIEKTKGIGVMR--KLKVLYMSNNLVKE-WAE-----FVKL 156 (202)
Q Consensus 88 ~l~~L~~L~l~~n~l~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~L~~L~l~~n~l~~-~~~-----~~~~ 156 (202)
.+++|++|++++|.++.++. ....+++|+.|+|++|.++++..+..+. +|+.|++.+|.++. ++. ...+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 56788899999998887653 3345688999999999988775444444 89999999998874 110 1234
Q ss_pred CCCCcceEEE
Q psy14661 157 GECPSLIDLV 166 (202)
Q Consensus 157 ~~l~~L~~l~ 166 (202)
..+++|+.|+
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5677777776
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.6e-06 Score=61.78 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=36.2
Q ss_pred CCccEEEccCCc-ccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccc
Q psy14661 135 RKLKVLYMSNNL-VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194 (202)
Q Consensus 135 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~ 194 (202)
++|++|++++|. +++ .++..+..+++|++|++++++-.+.. .......-..+|+++.
T Consensus 114 ~~L~~L~Ls~C~~ITD-~Gl~~L~~~~~L~~L~L~~c~~Itd~--gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 114 KSMLEMEIISCGNVTD-KGIIALHHFRNLKYLFLSDLPGVKEK--EKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHCCEEEEESCTTCCH-HHHHHGGGCTTCCEEEEESCTTCCCH--HHHHHHHHHHCTTCEE
T ss_pred CCCCEEEcCCCCcCCH-HHHHHHhcCCCCCEEECCCCCCCCch--HHHHHHHHHHCCCcEE
Confidence 467888888874 666 34556677888888888888643331 1222334466777653
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=1.9e-06 Score=61.32 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=61.5
Q ss_pred CCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCcc-ccccC--Cccc---ccCCCcEEEccccc-CCC--CCCCCCCC
Q psy14661 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN-IKSFA--GLEP---LAETLEELWVSYNY-IEK--TKGIGVMR 135 (202)
Q Consensus 67 l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~-l~~~~--~~~~---~~~~L~~L~l~~n~-l~~--~~~~~~~~ 135 (202)
-..|+.|+++++.|+.. ..+..+++|++|++++|. +++.. .+.. .+++|+.|++++|. +++ +..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34788999999888865 777888999999999984 66421 2222 12479999999985 765 23466789
Q ss_pred CccEEEccCCc-ccCc
Q psy14661 136 KLKVLYMSNNL-VKEW 150 (202)
Q Consensus 136 ~L~~L~l~~n~-l~~~ 150 (202)
+|+.|++++|. +++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 99999999985 6653
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.49 E-value=0.001 Score=53.18 Aligned_cols=104 Identities=10% Similarity=0.205 Sum_probs=70.8
Q ss_pred hccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccE
Q psy14661 64 LAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKV 139 (202)
Q Consensus 64 l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~ 139 (202)
|..+..|+.+.+..+..+-- ..|..+..|+.+.+. +.++.++ ..+..+.+|+.+.+..+ ++.++ .|..+.+|+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 66777888887765443322 667778888888885 3455555 34444578888888654 55554 4788888888
Q ss_pred EEccCCcccCccccccCCCCCcceEEEecCCc
Q psy14661 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171 (202)
Q Consensus 140 L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~ 171 (202)
+.+..+ ++.++. ..+.+|.+|+.+.+.++.
T Consensus 339 i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 339 IAIPSS-VTKIPE-SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEECTT-CCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred EEECcc-cCEEhH-hHhhCCCCCCEEEECCce
Confidence 888654 555543 578888888888887764
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.00085 Score=53.16 Aligned_cols=121 Identities=14% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEc
Q psy14661 45 SEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV 120 (202)
Q Consensus 45 ~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l 120 (202)
..++.+.+..+ +..++.. +..+..|+.+.+..+ ++.+ ..|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 33445444332 3333332 556667777766554 4444 55666667777776543 44333 23344467777777
Q ss_pred ccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCC
Q psy14661 121 SYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170 (202)
Q Consensus 121 ~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n 170 (202)
.++.++.++ .|..+.+|+.+.+..+ ++.++. ..+.+|.+|+.+.+..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc
Confidence 777776665 4777777777777654 444443 46677777777776443
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.46 E-value=0.0017 Score=51.37 Aligned_cols=122 Identities=15% Similarity=0.188 Sum_probs=83.8
Q ss_pred hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCcc
Q psy14661 64 LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLK 138 (202)
Q Consensus 64 l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~ 138 (202)
+..+.+++.+.+..+ ++.+ ..+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++ .|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 445566666666443 3333 56777888888888765 44444 33444568888887543 55555 488899999
Q ss_pred EEEccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 139 VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 139 ~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.+.+.++.+..++. ..+.+|.+|+.+.+..+ +...... .+..+++|+.+.
T Consensus 290 ~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~ 339 (379)
T 4h09_A 290 KVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY------AFKNCKALSTIS 339 (379)
T ss_dssp EEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT------TTTTCTTCCCCC
T ss_pred cccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH------HhhCCCCCCEEE
Confidence 99999888887754 68889999999999644 5555422 566778887665
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.39 E-value=0.0008 Score=53.73 Aligned_cols=132 Identities=12% Similarity=0.121 Sum_probs=87.8
Q ss_pred HhhhhhhcCCCCCCceEEEccCccccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCccccccC-Cc
Q psy14661 33 LKKWEEENGIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFA-GL 108 (202)
Q Consensus 33 ~~~~~~~~~~~~~~l~~L~l~~~~i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~ 108 (202)
+.......+.....++.+.+..+. ..++.. +..+++|+.+.+. +.++.+ ..|..+.+|+.+.+..+ ++.+. ..
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 333444445666778888886543 344443 8889999999996 556666 77889999999999865 55555 34
Q ss_pred ccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcC
Q psy14661 109 EPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 109 ~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~ 172 (202)
+..|.+|+.+.+..+ ++.++ .|.++.+|+.+.+.++.... ..+..+.+|+.+.+..+.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCE
Confidence 445689999999654 77776 58999999999999875432 2456778888888765543
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.35 E-value=0.00098 Score=53.22 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=41.7
Q ss_pred CCCCCCCcEEEccCccccccC-CcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcccCccccccCCCCCcc
Q psy14661 86 LSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL 162 (202)
Q Consensus 86 ~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 162 (202)
|..+.+|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++ .|.++.+|+.+.+..+ +..++. ..+.+|.+|
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~aF~~C~~L 368 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA-NAFQGCINL 368 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTBTTCTTC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH-HHhhCCCCC
Confidence 444555555555433 33333 22333456666666432 44443 3566666666666554 444432 456666666
Q ss_pred eEEEecC
Q psy14661 163 IDLVFCG 169 (202)
Q Consensus 163 ~~l~l~~ 169 (202)
+.+.+..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 6666643
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.31 E-value=0.00063 Score=45.82 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=23.7
Q ss_pred EEEccCcccc--ccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEEEccCCcc
Q psy14661 94 VLSLARNNIK--SFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVLYMSNNLV 147 (202)
Q Consensus 94 ~L~l~~n~l~--~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l 147 (202)
.++-+++.++ .+|.... ++++.|+|++|.++.++ .|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4444445444 4442211 24555555555555544 244444555555555443
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.29 E-value=0.0014 Score=52.34 Aligned_cols=121 Identities=17% Similarity=0.091 Sum_probs=74.5
Q ss_pred hccCCCCCEEECCCCCCcCc-cCCCCCCCCcEEEccCccccccCCcccccCCCcEEEcccccCCCCC--CCCCCCCccEE
Q psy14661 64 LAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTK--GIGVMRKLKVL 140 (202)
Q Consensus 64 l~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~L~~L 140 (202)
+..+..++.+.+..+...-- ..|..+..++.+......+.. ..+..+.+|+.+.+..+ ++.++ .|..+.+|+.+
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 44445555555544322211 445555555555554443321 22334468888887654 55555 48888999999
Q ss_pred EccCCcccCccccccCCCCCcceEEEecCCcCCCCCCchhhHHHHHHhCCCccccc
Q psy14661 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196 (202)
Q Consensus 141 ~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~~~~~~~l~~L~~L~ 196 (202)
.+..+ ++.++. ..+.+|.+|+.+.+..+ +...... .+..+++|+.++
T Consensus 326 ~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~------aF~~C~~L~~i~ 372 (394)
T 4fs7_A 326 DLPYL-VEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN------AFQGCINLKKVE 372 (394)
T ss_dssp CCCTT-CCEECT-TTTTTCTTCCEECCCTT-CCEECTT------TBTTCTTCCEEE
T ss_pred EeCCc-ccEEhH-HhccCCCCCCEEEECcc-ccEehHH------HhhCCCCCCEEE
Confidence 99754 666544 57889999999999766 5555432 567788887765
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=9.7e-05 Score=53.49 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=73.1
Q ss_pred hhhccCCCCCEEECCCC-CCcCc------cCCCCCCCCcEEEccCccccccC-----CcccccCCCcEEEcccccCCCCC
Q psy14661 62 SSLAVLTNCEKLSLSTN-MIEKI------NGLSGLKKLKVLSLARNNIKSFA-----GLEPLAETLEELWVSYNYIEKTK 129 (202)
Q Consensus 62 ~~l~~l~~L~~L~l~~n-~i~~~------~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~L~~L~l~~n~l~~~~ 129 (202)
..+..-+.|+.|++++| .|... ..+..-..|+.|++++|.+.... ........|+.|+|+.|.|+.-.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33566789999999985 77642 45566678999999999887521 12223367888999988887532
Q ss_pred ------CCCCCCCccEEEccCC---cccCcc---ccccCCCCCcceEEEecCCcC
Q psy14661 130 ------GIGVMRKLKVLYMSNN---LVKEWA---EFVKLGECPSLIDLVFCGNPL 172 (202)
Q Consensus 130 ------~~~~~~~L~~L~l~~n---~l~~~~---~~~~~~~l~~L~~l~l~~n~~ 172 (202)
.+..-+.|+.|++++| .+.+-. ....+..-+.|..++++.|..
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3556667888888765 334311 113445566788888875543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00013 Score=52.76 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=64.9
Q ss_pred CCCCceEEEccCc-cccc-----cchhhccCCCCCEEECCCCCCcCc------cCCCCCCCCcEEEccCccccccC----
Q psy14661 43 PISEAKEVGLQMQ-FIEK-----MDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFA---- 106 (202)
Q Consensus 43 ~~~~l~~L~l~~~-~i~~-----l~~~l~~l~~L~~L~l~~n~i~~~------~~~~~l~~L~~L~l~~n~l~~~~---- 106 (202)
.-++|++|+|+++ .|+. +...+...+.|+.|+|++|.|.+. ..+..-+.|++|++++|.|+.-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456888888875 5543 445577778888888888888754 23334567888888888886411
Q ss_pred -CcccccCCCcEEEcccccC---CCC-----C-CCCCCCCccEEEccCCcc
Q psy14661 107 -GLEPLAETLEELWVSYNYI---EKT-----K-GIGVMRKLKVLYMSNNLV 147 (202)
Q Consensus 107 -~~~~~~~~L~~L~l~~n~l---~~~-----~-~~~~~~~L~~L~l~~n~l 147 (202)
........|+.|++++|.. ..- . .+..-++|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1122224688888876532 211 1 134456777888776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.0018 Score=43.57 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=38.0
Q ss_pred EEEcccccCC--CCCCCCCCCCccEEEccCCcccCccccccCCCCCcceEEEecCCcCCCCC
Q psy14661 117 ELWVSYNYIE--KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176 (202)
Q Consensus 117 ~L~l~~n~l~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 176 (202)
.++.+++.++ .+|. .-.++|+.|+|++|.|+.++. ..+..+++|+.|+|.+|++.+.+
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccC
Confidence 5666666666 6663 123467777777777777653 45566777777777777777665
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=64.01 E-value=9.1 Score=23.88 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=24.5
Q ss_pred ccccchh-hccCCCCCEEECCCCCCcCc--cCCCCCCCCcEEEccCc
Q psy14661 57 IEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARN 100 (202)
Q Consensus 57 i~~l~~~-l~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n 100 (202)
+..+... |..|.+|+.+.+..+ ++.+ ..|..+.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4444443 666666666666543 4444 55666666666666543
Done!