RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14661
(202 letters)
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 176 bits (447), Expect = 2e-56
Identities = 86/182 (47%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query: 24 LAKPNL-KDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
+AK KDA++ +EE + +EA++V L IEKMD++L+ L C+ L+LSTN I
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60
Query: 81 EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
EKI+ LSG++ L++LSL RN IK L+ +A+TLEELW+SYN I GI + L+VL
Sbjct: 61 EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120
Query: 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE----GMDDPLYKSEVKKRLPNLKKLD 196
YMSNN + W E KL L DL+ GNPL Y+ EV KRLPNLKKLD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Query: 197 GE 198
G
Sbjct: 181 GM 182
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 97.0 bits (242), Expect = 8e-26
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 8/150 (5%)
Query: 52 LQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGL-SGLKKLKVLSLARNNIKSFAGLEP 110
L + IE+ + +L L I I L + L + + + N I+ G
Sbjct: 4 LTAELIEQA-AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 62
Query: 111 LAETLEELWVSYNYIEKTKGI--GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
L L+ L V+ N I + + L L ++NN + E + L SL L
Sbjct: 63 LRR-LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
NP+ Y+ V ++P ++ LD +
Sbjct: 122 RNPVTN---KKHYRLYVIYKVPQVRVLDFQ 148
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 101 bits (253), Expect = 2e-25
Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 5/159 (3%)
Query: 39 ENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLA 98
+ P+ A L+ +F+ + + L L+ + + L L + L L+
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLS 471
Query: 99 RNNIKSF-AGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLG 157
N +++ L L LE L S N +E G+ + +L+ L + NN +++ A L
Sbjct: 472 HNRLRALPPALAAL-RCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLV 530
Query: 158 ECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
CP L+ L GN L + + + + + LP++ +
Sbjct: 531 SCPRLVLLNLQGNSLCQ---EEGIQERLAEMLPSVSSIL 566
Score = 29.7 bits (66), Expect = 0.69
Identities = 23/172 (13%), Positives = 55/172 (31%), Gaps = 14/172 (8%)
Query: 28 NLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLS 87
L + + + L ++ + S L ++L N + +
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIIL 390
Query: 88 GLKKLKVLSLARNNIKSFAGLE---PLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSN 144
++ L L + ++ F+ L+ P+ + S +E + ++VL++++
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450
Query: 145 NLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ L + + L N L + L L L+ L
Sbjct: 451 KDLTVLCH---LEQLLLVTHLDLSHNRLRA-LPPALAA------LRCLEVLQ 492
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 95.8 bits (238), Expect = 2e-24
Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 6/193 (3%)
Query: 14 CRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKL 73
A+ A+ K ++ + N L+ + +E++ ++ + +
Sbjct: 71 ASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQ 130
Query: 74 SLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGV 133
+L + L VL+ + +E L L +S N + + +
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 190
Query: 134 ----MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM-DDPLYKSEVKKR 188
LK+L +S N +K E K+ L +L GN L + D Y S +++R
Sbjct: 191 IVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIRER 249
Query: 189 LPNLKKLDGEVLP 201
P L +LDG LP
Sbjct: 250 FPKLLRLDGHELP 262
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 86.3 bits (214), Expect = 7e-22
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 24/141 (17%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
K++ E LS + I L L KLK L L+ N + GLE LAE
Sbjct: 31 EGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG--GLEVLAEKCP 88
Query: 117 ELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
L L +S N +K+ + L + +L L +
Sbjct: 89 -------------------NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT--- 126
Query: 177 DDPLYKSEVKKRLPNLKKLDG 197
+ Y+ V K LP L LDG
Sbjct: 127 NLNDYRENVFKLLPQLTYLDG 147
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 85.6 bits (212), Expect = 2e-21
Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 24/141 (17%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
K++ A N E LSL + ++ L L KLK L L+ N I GL+ LAE L
Sbjct: 38 DGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG--GLDMLAEKLP 95
Query: 117 ELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
L L +S N +K+ + L + L L +
Sbjct: 96 -------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT--- 133
Query: 177 DDPLYKSEVKKRLPNLKKLDG 197
+ Y+ V K LP L LDG
Sbjct: 134 NLNDYRESVFKLLPQLTYLDG 154
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 88.2 bits (219), Expect = 2e-21
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
SSL L + LSL N I INGL L +L+ L L N I L L + L+ L +
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLE 164
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + KL+ LY+S N + + L +L L + + P+
Sbjct: 165 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECL---NKPIN 218
Query: 182 KSEVKKRLPNLKKLDGEVLP 201
+K DG ++
Sbjct: 219 HQSNLVVPNTVKNTDGSLVT 238
Score = 76.6 bits (189), Expect = 3e-17
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 16/137 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S K +L + + L + + ++IKS G++ L + +L+++
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLN 76
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDP 179
N + K + ++ L L++ N VK + L + L L N + + G+
Sbjct: 77 GNKLTDIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGISDINGLVH- 132
Query: 180 LYKSEVKKRLPNLKKLD 196
LP L+ L
Sbjct: 133 ---------LPQLESLY 140
Score = 62.8 bits (153), Expect = 3e-12
Identities = 18/127 (14%), Positives = 46/127 (36%), Gaps = 16/127 (12%)
Query: 72 KLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGI 131
+ I++I + +L + ++ L +++++ + + I+ +GI
Sbjct: 6 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGI 64
Query: 132 GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDPLYKSEVKKRL 189
+ + L+++ N + + L +L L N + + + D L
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKPLANL---KNLGWLFLDENKVKDLSSLKD----------L 111
Query: 190 PNLKKLD 196
LK L
Sbjct: 112 KKLKSLS 118
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFA-GLEPLAETLEELWV 120
LA LT + L LS N I + L+GLK L VL L + + +
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 121 SYNYIEKTKGI---GVMRKLKVLYMSNNLVKE 149
+ + + I G K V + E
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNE 263
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 90.2 bits (223), Expect = 2e-21
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
SSL L + LSL N I INGL L +L+ L L N I L L L+ L +
Sbjct: 103 SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRL-TKLDTLSLE 161
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + KL+ LY+S N + + L +L L + + P+
Sbjct: 162 DNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL---KNLDVLELFSQECL---NKPIN 215
Query: 182 KSEVKKRLPNLKKLDG 197
+K DG
Sbjct: 216 HQSNLVVPNTVKNTDG 231
Score = 79.0 bits (194), Expect = 2e-17
Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L + +++ + + I+ + G+ L + L L N + L L L L++
Sbjct: 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLD 95
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I+ + ++KLK L + +N + + L P L L N + + L
Sbjct: 96 ENKIKDLSSLKDLKKLKSLSLEHNGIS---DINGLVHLPQLESLYLGNNKITD--ITVL- 149
Query: 182 KSEVKKRLPNLKKLD 196
RL L L
Sbjct: 150 -----SRLTKLDTLS 159
Score = 78.2 bits (192), Expect = 3e-17
Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
K +L + + L + + ++IKS G++ L + +L+++
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VTKLFLN 73
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDP 179
N + K + ++ L L++ N +K + L + L L N + + G+
Sbjct: 74 GNKLTDIKPLTNLKNLGWLFLDENKIK---DLSSLKDLKKLKSLSLEHNGISDINGLVH- 129
Query: 180 LYKSEVKKRLPNLKKLD 196
LP L+ L
Sbjct: 130 ---------LPQLESLY 137
Score = 77.1 bits (189), Expect = 6e-17
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L N KL L+ N + I L+ LK L L L N IK + L+ L + L+ L +
Sbjct: 59 QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDL-KKLKSLSLE 117
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
+N I G+ + +L+ LY+ NN + + +L L L N + + PL
Sbjct: 118 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRL---TKLDTLSLEDNQISD--IVPL- 171
Query: 182 KSEVKKRLPNLKKLD 196
L L+ L
Sbjct: 172 -----AGLTKLQNLY 181
Score = 69.8 bits (170), Expect = 3e-14
Identities = 18/128 (14%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 71 EKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKG 130
+ + I++I + +L + ++ L +++++ + + I+ +G
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQG 60
Query: 131 IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDPLYKSEVKKR 188
I + + L+++ N + + L +L L N + + + D
Sbjct: 61 IQYLPNVTKLFLNGNKLTDIKPLTNL---KNLGWLFLDENKIKDLSSLKD---------- 107
Query: 189 LPNLKKLD 196
L LK L
Sbjct: 108 LKKLKSLS 115
Score = 45.9 bits (108), Expect = 3e-06
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI--KSFAGLEPLAETLEELW 119
LA LT + L LS N I + L+GLK L VL L K L +
Sbjct: 169 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVV-PNTVK 227
Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNNLVKEW 150
+ + + I + + +L +
Sbjct: 228 NTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 258
Score = 32.0 bits (72), Expect = 0.11
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 115 LEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL-- 172
+ E I++ + + V + V E S+ ++ + +
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVT---DAVTQNELNSIDQIIANNSDIKS 57
Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
V+G+ LPN+ KL
Sbjct: 58 VQGIQY----------LPNVTKLF 71
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 87.4 bits (217), Expect = 3e-21
Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 24/159 (15%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ + TN ++L LS N I ++ L L KL+ LS+ RN +K+ G+ L L++
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA--CLSRLFLD 114
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL-------------------GECPSL 162
N + T + ++ L++L + NN +K L +
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV 174
Query: 163 IDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGEVLP 201
+ G V ++P+ +K DG +
Sbjct: 175 NWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWIS 210
Score = 75.4 bits (186), Expect = 7e-17
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 13/135 (9%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
L N K +L + + L ++ + +NI+S AG++ L+EL +S
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFF-TNLKELHLS 71
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
+N I + + KL+ L ++ N +K + L L N L + D L
Sbjct: 72 HNQISDLSPLKDLTKLEELSVNRNRLKN----LNGIPSACLSRLFLDNNELRDT--DSLI 125
Query: 182 KSEVKKRLPNLKKLD 196
L NL+ L
Sbjct: 126 H------LKNLEILS 134
Score = 43.5 bits (103), Expect = 1e-05
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
L L+ E L L N I GL+ LKK+ + L + EP+ + EL+++
Sbjct: 144 VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVN----EPV-KYQPELYIT 198
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNN 145
N ++ G R + Y+SN
Sbjct: 199 -NTVKDPDG----RWISPYYISNG 217
Score = 27.7 bits (62), Expect = 2.8
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 15/76 (19%)
Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL--VEGMDDPL 180
I + + + V + V E + + + + + GM
Sbjct: 7 TPINQVFPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQSLAGMQF-- 61
Query: 181 YKSEVKKRLPNLKKLD 196
NLK+L
Sbjct: 62 --------FTNLKELH 69
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 80.3 bits (199), Expect = 2e-18
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 10/135 (7%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S LA LT+ + N I I ++ + +L L + N I + L L++ L L +
Sbjct: 193 SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ-LTWLEIG 251
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + KLK+L + +N + + + L L L N L + +
Sbjct: 252 TNQISDINAVKDLTKLKMLNVGSNQISDISVLNNL---SQLNSLFLNNNQLGNEDMEVI- 307
Query: 182 KSEVKKRLPNLKKLD 196
L NL L
Sbjct: 308 -----GGLTNLTTLF 317
Score = 76.0 bits (188), Expect = 8e-17
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S LA L+ L + TN I IN + L KLK+L++ N I + L L L L+++
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNL-SQLNSLFLN 295
Query: 122 YNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
N + + IG + L L++S N + + L + F +
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL---SKMDSADFANQVI 345
Score = 74.5 bits (184), Expect = 3e-16
Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S L+ +T L+++ + ++ + ++ L L LSL N I+ + L L L
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAY 207
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + M +L L + NN + + + L L L N +
Sbjct: 208 VNQITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQIS-------- 256
Query: 182 KSEVKKRLPNLKKLD 196
K L LK L+
Sbjct: 257 DINAVKDLTKLKMLN 271
Score = 74.1 bits (183), Expect = 4e-16
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
A L + L + + L+ + L +A + S G+E L LE L ++
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTN-LEYLNLN 74
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + KL LY+ N + + + L +L +L + + + PL
Sbjct: 75 GNQITDISPLSNLVKLTNLYIGTNKITDISALQNL---TNLRELYLNEDNISDI--SPL- 128
Query: 182 KSEVKKRLPNLKKLD 196
L + L+
Sbjct: 129 -----ANLTKMYSLN 138
Score = 72.2 bits (178), Expect = 2e-15
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 13/136 (9%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ LTN E L+L+ N I I+ LS L KL L + N I + L+ L L EL+++
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNL-TNLRELYLN 118
Query: 122 YNYIEKTKGIGVMRKLKVLYMS-NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
+ I + + K+ L + N+ + + + + L L + +
Sbjct: 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNM---TGLNYLTVTESKVK------- 168
Query: 181 YKSEVKKRLPNLKKLD 196
L +L L
Sbjct: 169 -DVTPIANLTDLYSLS 183
Score = 66.4 bits (163), Expect = 3e-13
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA--ETLEELW 119
+++ LT + L++ +N I I+ L+ L +L L L N + + +E + L L+
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLF 317
Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNNLVKE 149
+S N+I + + + K+ +N ++K+
Sbjct: 318 LSQNHITDIRPLASLSKMDSADFANQVIKK 347
Score = 61.0 bits (149), Expect = 2e-11
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 72 KLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGI 131
L+ I +I + L + L + ++ E L E++ +L V+ + +GI
Sbjct: 4 TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEEL-ESITKLVVAGEKVASIQGI 62
Query: 132 GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPN 191
+ L+ L ++ N + + + L L +L N + + L N
Sbjct: 63 EYLTNLEYLNLNGNQITDISPLSNL---VKLTNLYIGTNKIT--------DISALQNLTN 111
Query: 192 LKKLD 196
L++L
Sbjct: 112 LRELY 116
Score = 42.9 bits (102), Expect = 3e-05
Identities = 16/105 (15%), Positives = 27/105 (25%), Gaps = 12/105 (11%)
Query: 92 LKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWA 151
L+ I LAE + + + + L ++ V
Sbjct: 2 AATLATLPAPINQIFPDADLAE-GIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQ 60
Query: 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ +L L GN + + PL L L L
Sbjct: 61 G---IEYLTNLEYLNLNGNQITD--ISPL------SNLVKLTNLY 94
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 80.8 bits (200), Expect = 3e-18
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L +LTN ++LSL+ N ++ I L+ L L L LA N I + A L L + L EL +
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLG 273
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + L L ++ N +++ + + +L L N + + P+
Sbjct: 274 ANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISD--ISPV- 327
Query: 182 KSEVKKRLPNLKKLD 196
L L++L
Sbjct: 328 -----SSLTKLQRLF 337
Score = 80.0 bits (198), Expect = 6e-18
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S LA LT L L+ N +E I+ +S LK L L+L NNI + + L L+ L+
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL-TKLQRLFFY 339
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N + + + + L +N + + L + L + P+
Sbjct: 340 NNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL---TRITQLGLNDQAWT---NAPVN 393
Query: 182 KSEVKKRLPNLKKLDGEVLP 201
+K + G ++
Sbjct: 394 YKANVSIPNTVKNVTGALIA 413
Score = 79.6 bits (197), Expect = 9e-18
Identities = 38/135 (28%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S LA LTN E L + N I I L L L LSL N +K L L L +L ++
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLA 251
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + KL L + N + L +L +L N L +
Sbjct: 252 NNQISNLAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQLED------- 301
Query: 182 KSEVKKRLPNLKKLD 196
L NL L
Sbjct: 302 -ISPISNLKNLTYLT 315
Score = 75.0 bits (185), Expect = 3e-16
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
LA LT E+L +S+N + I+ L+ L L+ L N I L L L+EL ++
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLN 229
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N ++ + + L L ++NN + A L L +L N + PL
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--ISPL- 283
Query: 182 KSEVKKRLPNLKKLD 196
L L L+
Sbjct: 284 -----AGLTALTNLE 293
Score = 73.1 bits (180), Expect = 1e-15
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 13/135 (9%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L N +++ S N + I L L KL + + N I L L L L +
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLF 120
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + L L +S+N + + L SL L GN + + PL
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTIS---DISALSGLTSLQQL-SFGNQVTD--LKPL- 173
Query: 182 KSEVKKRLPNLKKLD 196
L L++LD
Sbjct: 174 -----ANLTTLERLD 183
Score = 72.3 bits (178), Expect = 3e-15
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L K L + + L ++ L R IKS G+E L L ++ S
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFS 76
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N + + + KL + M+NN + + L +L L N + +
Sbjct: 77 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANL---TNLTGLTLFNNQITD------- 126
Query: 182 KSEVKKRLPNLKKLD 196
+ K L NL +L+
Sbjct: 127 -IDPLKNLTNLNRLE 140
Score = 68.8 bits (169), Expect = 4e-14
Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S+L+ LT+ ++LS N + + L+ L L+ L ++ N + + L L LE L +
Sbjct: 150 SALSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-TNLESLIAT 207
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I +G++ L L ++ N +K + L +L DL N +
Sbjct: 208 NNQISDITPLGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQIS-------- 256
Query: 182 KSEVKKRLPNLKKLD 196
L L +L
Sbjct: 257 NLAPLSGLTKLTELK 271
Score = 61.9 bits (151), Expect = 1e-11
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 75 LSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVM 134
I +I + L + L + N+ L + + L I+ G+ +
Sbjct: 9 TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYL 67
Query: 135 RKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194
L + SNN + + L L+D++ N + + PL L NL
Sbjct: 68 NNLTQINFSNNQLTDITPLKNL---TKLVDILMNNNQIAD--ITPL------ANLTNLTG 116
Query: 195 LD 196
L
Sbjct: 117 LT 118
Score = 39.9 bits (94), Expect = 3e-04
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
SSLA LTN LS N I + L+ L ++ L L + ++ +
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406
Query: 122 YNY-IEKTKGIGVMRKLKVLYMSNNL 146
+ I ++ NL
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNL 432
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 78.2 bits (193), Expect = 1e-17
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S++A L + + L L++ I + L+GL L+VL L N I + + L L L+ L +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGL-TNLQYLSIG 159
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
+ + + KL L +N + + L P+LI++ N + + PL
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQISD--VSPL- 213
Query: 182 KSEVKKRLPNLKKLD 196
NL +
Sbjct: 214 -----ANTSNLFIVT 223
Score = 76.3 bits (188), Expect = 6e-17
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L N L L N I + L L K+ L L+ N +K+ + + L ++ L ++
Sbjct: 57 EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS-IKTLDLT 115
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
I + + L+VLY+ N + + L +L L + + PL
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD--LTPL- 169
Query: 182 KSEVKKRLPNLKKLD 196
L L L
Sbjct: 170 -----ANLSKLTTLK 179
Score = 75.9 bits (187), Expect = 9e-17
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ L LT +L LS N ++ ++ ++GL+ +K L L I L L+ L+ L++
Sbjct: 79 APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN-LQVLYLD 137
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + L+ L + N V + L L L N +
Sbjct: 138 LNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL---SKLTTLKADDNKIS-------- 186
Query: 182 KSEVKKRLPNLKKLD 196
LPNL ++
Sbjct: 187 DISPLASLPNLIEVH 201
Score = 74.0 bits (182), Expect = 4e-16
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S LA LTN + LS+ + + L+ L KL L N I + L L L E+ +
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL-PNLIEVHLK 203
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVK 155
N I + L ++ ++N + F
Sbjct: 204 NNQISDVSPLANTSNLFIVTLTNQTITNQPVFYN 237
Score = 73.6 bits (181), Expect = 6e-16
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
L N K++ + + + L + LS + + G++ L L L +
Sbjct: 13 FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYL-NNLIGLELK 71
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N I + + K+ L +S N +K + S+ L + + PL
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITD--VTPL- 125
Query: 182 KSEVKKRLPNLKKLD 196
L NL+ L
Sbjct: 126 -----AGLSNLQVLY 135
Score = 57.8 bits (140), Expect = 2e-10
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 74 SLSTNM-IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIG 132
S++ I I L ++ ++N+ L + + L + +G+
Sbjct: 2 SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGVQ 60
Query: 133 VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192
+ L L + +N + + A L + +L GNPL + L ++
Sbjct: 61 YLNNLIGLELKDNQITDLAPLKNL---TKITELELSGNPLKN--VSAIAG------LQSI 109
Query: 193 KKLD 196
K LD
Sbjct: 110 KTLD 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 65.0 bits (159), Expect = 2e-13
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 27 PNLKDALKKWEEENGI-PISEA-----KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMI 80
K L ++ I+EA + L + + + + N + L+++
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHA 78
Query: 81 EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAE--TLEELWVSYNYIEKT--KGIGVMRK 136
N +SGL L+ L + ++ S + L+ +L L +S++ + + I + K
Sbjct: 79 TNYNPISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 137 LKVLYMSNN 145
+ + +S N
Sbjct: 138 VNSIDLSYN 146
Score = 63.1 bits (154), Expect = 9e-13
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 62 SSLAVLTNCEKLSLSTNMIE--KINGLSGLKKLKVLSLARNN-IKSFAGLEPLAETLEEL 118
+L+ LT+ L +S + + + ++ L K+ + L+ N I L+ L E L+ L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-LKSL 164
Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLV 147
+ ++ + +GI KL LY + +
Sbjct: 165 NIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193
Score = 43.4 bits (103), Expect = 9e-06
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS 104
L L + L++ + + G+ KL L I
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 66.8 bits (163), Expect = 2e-13
Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 14/143 (9%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWV 120
+SL + L N + + KL L L N I+ + +E L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626
Query: 121 SYNYIE---KTKGIGVMRKLKVLYMSNN----LVKEWAEFVKLGECPSLIDLVFCGNPLV 173
S+N ++ + + + S N + + + + + + N +
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI- 685
Query: 174 EGMDDPLYKSEVKKRLPNLKKLD 196
+ L+ + +
Sbjct: 686 QKFPTELF-----ATGSPISTII 703
Score = 58.7 bits (142), Expect = 2e-10
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 24/160 (15%)
Query: 52 LQMQFIEKMDSSLAVLTNCEKLSLS-TNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLE 109
+ E + S + L + + L + ++ + L L +L+ L++A N S A L+
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Query: 110 PLAET----------LEELWVSYNYIE---KTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
++ ++ YN +E + + M KL +L +N V+ F
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF--- 591
Query: 157 GECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
G L DL N + E + ++ L
Sbjct: 592 GTNVKLTDLKLDYNQIEEI------PEDFCAFTDQVEGLG 625
Score = 55.7 bits (134), Expect = 2e-09
Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 21/158 (13%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-----------NGLSGLKKLKVLSLARNN 101
+ ++ L L + L+++ N + K+++ + NN
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559
Query: 102 IKSF---AGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGE 158
++ F A L+ + L L +N + + G KL L + N ++E E
Sbjct: 560 LEEFPASASLQKM-VKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAF 617
Query: 159 CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ L F N L + K + + +D
Sbjct: 618 TDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVD 650
Score = 51.8 bits (124), Expect = 4e-08
Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 36/158 (22%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI---------NGLSGLKKLKVLSLARNNIKS------F 105
A + + LS N++ I L + L N + S
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749
Query: 106 AGLEPLAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVK-----LGEC 159
L L + VSYN +LK + + E ++ + C
Sbjct: 750 TTL----PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805
Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEV-KKRLPNLKKLD 196
PSLI L N + +V +K P L LD
Sbjct: 806 PSLIQLQIGSNDI----------RKVDEKLTPQLYILD 833
Score = 49.5 bits (118), Expect = 2e-07
Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 15/143 (10%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF--AGLEPLAET------LE 116
N ++LS N I+K + + + L+ N + S L+P L
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731
Query: 117 ELWVSYNYIEK---TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
+ + +N + + L + +S N + + L
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT--QPLNSSQLKAFGIRHQRDA 789
Query: 174 EGMDDPLYKSEVKKRLPNLKKLD 196
EG P+L +L
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQ 812
Score = 49.5 bits (118), Expect = 2e-07
Identities = 22/155 (14%), Positives = 41/155 (26%), Gaps = 41/155 (26%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKIN---------------------GLSGLKKLKVL 95
I + ++ LT + + + + N S LK L +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496
Query: 96 SLARNNI-----KSFAGLEPLAETLEELWVSYNYIEK-----------TKGIGVMRKLKV 139
L L L+ L ++ N K+++
Sbjct: 497 ELYNCPNMTQLPDFLYDL----PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
YM N ++E+ L + L L N +
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587
Score = 46.0 bits (109), Expect = 3e-06
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 17/131 (12%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSF-AGLEPLA 112
++ D + + L N + + + L L + ++ N SF
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS- 775
Query: 113 ETLEELWVSYNYIEKT--------KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLID 164
L+ + + + GI L L + +N +++ V P L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK----VDEKLTPQLYI 831
Query: 165 LVFCGNPLVEG 175
L NP +
Sbjct: 832 LDIADNPNISI 842
Score = 39.5 bits (92), Expect = 5e-04
Identities = 17/166 (10%), Positives = 40/166 (24%), Gaps = 39/166 (23%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGL------------------------------KKL 92
L L + I + + + KL
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450
Query: 93 KVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMS-NNLVKE 149
+++ A + +A E+ Y + ++ L + + + +
Sbjct: 451 QIIYFANSPFTYD----NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506
Query: 150 WAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKL 195
+F L + P L L N + + + K+
Sbjct: 507 LPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550
Score = 32.2 bits (73), Expect = 0.100
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 71 EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS----FAGLEPLAETLEELWVSYNY 124
LSL+ + + + L +LKVLS ++ F E + EE
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
K + ++L + + + + E +
Sbjct: 386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417
Score = 32.2 bits (73), Expect = 0.13
Identities = 23/177 (12%), Positives = 51/177 (28%), Gaps = 46/177 (25%)
Query: 54 MQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---------------------------NGL 86
++ ++ LT + LS T+ L
Sbjct: 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFL 392
Query: 87 SGLKKLKVLSLARNNIKSFAGLEPLAE------TLEELWVSYNYIEK-TKGIGVMRKLKV 139
++L + L ++ I ++P+ + ++ N I +K I + KL++
Sbjct: 393 DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452
Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+Y +N+ F D E + L +L ++
Sbjct: 453 IYFANS------PFTYDNIAVDWEDANSDYAKQYENEELSW------SNLKDLTDVE 497
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 9/45 (20%)
Query: 86 LSGLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYI 125
L ++ LSLA K + L L+ L +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQL----TELKVLSFGTHSE 359
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 65.4 bits (160), Expect = 5e-13
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
+ LA T E L+LS+N++ + L L L+ L L N ++ ++E L
Sbjct: 51 AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKE--WAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
+ N I + + K +Y++NN + + + L N +
Sbjct: 107 ANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDEGCR---SRVQYLDLKLNEIDT---- 158
Query: 179 PLYKSEVKKRLPNLKKLD 196
+ +E+ L+ L+
Sbjct: 159 -VNFAELAASSDTLEHLN 175
Score = 64.2 bits (157), Expect = 1e-12
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNIKSFAGLEPLAETLEE 117
D + + L L N I+ +N + L+ L+L N I G L+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKT 195
Query: 118 LWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
L +S N + + + + NN + + L +L GN
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGF 249
Score = 60.8 bits (148), Expect = 2e-11
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
S N ++L LS N + +I L+ KL++L+L+ N + LE L+ L L
Sbjct: 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST-LRTL 85
Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
++ NY+++ + V ++ L+ +NN + V ++ N + D
Sbjct: 86 DLNNNYVQE---LLVGPSIETLHAANNNISR----VSCSRGQGKKNIYLANNKITMLRDL 138
Query: 179 PLYKSEVKKRLPNLKKLD 196
++ LD
Sbjct: 139 DEGC------RSRVQYLD 150
Score = 57.3 bits (139), Expect = 3e-10
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 28/138 (20%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
+ ++ + +++ + +K L L+ N + A LE L
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLN 64
Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179
+S N + +T + + L+ L ++NN V+E L PS+ L N +
Sbjct: 65 LSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI------- 111
Query: 180 LYKSEVKKR-LPNLKKLD 196
S V K +
Sbjct: 112 ---SRVSCSRGQGKKNIY 126
Score = 42.3 bits (100), Expect = 4e-05
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 2/93 (2%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
+ M +SL N + I L + L+ L N + ++
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 116 EELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLV 147
V+ ++K T + L
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 63.5 bits (155), Expect = 3e-12
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 12/137 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
L N +SL+ I+ + + K + LS+ R +K F L+ L+ L ++
Sbjct: 279 VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLT 336
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKE--WAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179
N + + L L +S N + + LG SL L N +
Sbjct: 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII----- 390
Query: 180 LYKSEVKKRLPNLKKLD 196
S L L+ LD
Sbjct: 391 --MSANFMGLEELQHLD 405
Score = 62.0 bits (151), Expect = 1e-11
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
S + + + L LS IE I GL L L L N I+S F+GL +
Sbjct: 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL----TS 105
Query: 115 LEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
LE L + + IG + LK L +++N + +L+ + N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Score = 52.0 bits (125), Expect = 3e-08
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
+ A TN L LS +E+I+ L +L++L+++ NN+ + L
Sbjct: 466 SNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL----Y 521
Query: 114 TLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNN 145
+L L S+N IE +KG + L ++NN
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Score = 51.2 bits (123), Expect = 5e-08
Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 26/153 (16%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGL 108
M ++ L + L + ++++ + L+KL L ++ N K F GL
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 109 EPLAETLEELWVSYNYIEKT---KGIGVMRKLKVLYMSNNLVKE--WAEFVKLGECPSLI 163
+L L ++ N + L L +S +++ W F L L
Sbjct: 448 ----TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL---HRLQ 500
Query: 164 DLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L N L +D Y L +L LD
Sbjct: 501 LLNMSHNNL-LFLDSSHYNQ-----LYSLSTLD 527
Score = 51.2 bits (123), Expect = 6e-08
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 13/139 (9%)
Query: 62 SSLAVLTNC--EKLSLSTNMIEKIN--GLSGLKKLKVLSLARNNIKSFAGLEPLAETLEE 117
S + L + ++ L+ + L + +SLA +IK + +
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH-FKWQS 311
Query: 118 LWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
L + +++ + + LK L ++ N + V L PSL L N L
Sbjct: 312 LSIIRCQLKQFPTLD-LPFLKSLTLTMNKGSISFKKVAL---PSLSYLDLSRNALSFSGC 367
Query: 178 DPLYKSEVKKRLPNLKKLD 196
+L+ LD
Sbjct: 368 CSYSDL----GTNSLRHLD 382
Score = 50.4 bits (121), Expect = 9e-08
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 13/141 (9%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLS----GLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
L + L LS N + S G L+ L L+ N + E L+ L
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404
Query: 119 WVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
++ +++ + KL L +S K + + SL L GN +
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLNTLKMAGNSFKDN 463
Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
++ + NL LD
Sbjct: 464 TLSNVFAN-----TTNLTFLD 479
Score = 49.3 bits (118), Expect = 3e-07
Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 25/150 (16%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLA 112
S + LT+ E L + + + L LK L++A N I S F+ L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL---- 152
Query: 113 ETLEELWVSYNYIE--KTKGIGVMRKLK----VLYMSNNLVKEWAEFVKLGECPSLIDLV 166
L + +SYNYI+ + +R+ L MS N + + + + L +L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD--QAFQGIKLHELT 210
Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
GN + ++ L L
Sbjct: 211 LRGNFNSSNIMKTCLQN-----LAGLHVHR 235
Score = 39.6 bits (93), Expect = 3e-04
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 26/116 (22%)
Query: 92 LKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSN 144
K + L+ N +K SF+ L+ L +S IE K + L L ++
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNF----SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89
Query: 145 N----LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N SL +LV L P+ +L LKKL+
Sbjct: 90 NPIQSFSPGS-----FSGLTSLENLVAVETKLASLESFPI------GQLITLKKLN 134
Score = 33.1 bits (76), Expect = 0.057
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 15/108 (13%)
Query: 93 KVLSLARNNIKSFAGLEP--LAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVK 148
+ P + + + + +S+N ++ K +L+ L +S ++
Sbjct: 14 ITYQCMDQKLSKV----PDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE 69
Query: 149 EWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ L +L+ GNP+ L +L+ L
Sbjct: 70 TIEDKA-WHGLHHLSNLILTGNPIQSFSPGSF------SGLTSLENLV 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 63.3 bits (154), Expect = 3e-12
Identities = 28/136 (20%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
+ LA T E L+LS+N++ + L L L+ L L N ++ ++E L
Sbjct: 51 AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
+ N I + + K +Y++NN + + G + L N + +
Sbjct: 107 ANNNISRVS-CSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT-----V 159
Query: 181 YKSEVKKRLPNLKKLD 196
+E+ L+ L+
Sbjct: 160 NFAELAASSDTLEHLN 175
Score = 59.5 bits (144), Expect = 8e-11
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
S N ++L LS N + +I L+ KL++L+L+ N + LE L+ L L
Sbjct: 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLST-LRTL 85
Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
++ NY+++ + V ++ L+ +NN + V ++ N + D
Sbjct: 86 DLNNNYVQE---LLVGPSIETLHAANNNISR----VSCSRGQGKKNIYLANNKITMLRDL 138
Query: 179 PLYKSEVKKRLPNLKKLD 196
++ LD
Sbjct: 139 DE------GCRSRVQYLD 150
Score = 56.4 bits (136), Expect = 8e-10
Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 22/135 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--LEPLAETLEELWVSY 122
+ ++ + +++ + +K L L+ N + + L P + LE L +S
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSS 67
Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
N + +T + + L+ L ++NN V+E L PS+ L N +
Sbjct: 68 NVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNI---------- 111
Query: 183 SEVKKR-LPNLKKLD 196
S V K +
Sbjct: 112 SRVSCSRGQGKKNIY 126
Score = 54.1 bits (130), Expect = 6e-09
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI----KSFAGLEPLAETLE 116
A E L+L N I + G KLK L L+ N + F +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA----AGVT 217
Query: 117 ELWVSYNYIEK-TKGIGVMRKLKVLYMSNN 145
+ + N + K + + L+ + N
Sbjct: 218 WISLRNNKLVLIEKALRFSQNLEHFDLRGN 247
Score = 42.5 bits (100), Expect = 5e-05
Identities = 19/144 (13%), Positives = 43/144 (29%), Gaps = 8/144 (5%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
+ M +SL N + I L + L+ L N + ++
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 116 EELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
V+ ++K G + + ++ + LI L + L+
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCED----LPAPFADRLIALKRKEHALL 318
Query: 174 EGMDDPLYKSEVKK-RLPNLKKLD 196
G + E ++ +++D
Sbjct: 319 SGQGSETERLECERENQARQREID 342
Score = 28.3 bits (63), Expect = 1.7
Identities = 4/57 (7%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 73 LSLSTNMIEKIN-GLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYNYIEK 127
LS + E++ + + + + ++ + + L +++
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 63.1 bits (154), Expect = 5e-12
Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ E ++ N +E++ L L L + N++K L L +LE + N +E
Sbjct: 172 PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILE 228
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP------- 179
+ + + L +Y NNL+K + PSL L N L + + P
Sbjct: 229 ELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPELPQSLTFLD 283
Query: 180 ---LYKSEVKKRLPNLKKLD 196
S + + PNL L+
Sbjct: 284 VSENIFSGLSELPPNLYYLN 303
Score = 57.3 bits (139), Expect = 4e-10
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 71 EKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKG 130
E L +S N +EK+ L LK++ + N++K L L +LE + N +E+
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LPDLPPSLEFIAAGNNQLEELPE 190
Query: 131 IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
+ + L +Y NN +K+ + SL +V N L E
Sbjct: 191 LQNLPFLTAIYADNNSLKKLPD-----LPLSLESIVAGNNILEE 229
Score = 51.9 bits (125), Expect = 2e-08
Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 34/148 (22%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
+ E L S N + ++ LK L V + + L LE L VS N +
Sbjct: 90 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD------LPPLLEYLGVSNNQL 143
Query: 126 EKTKGIGVMRKLKVLYMSNNLVKEWAEFVK-----------------LGECPSLIDLVFC 168
EK + LK++ + NN +K+ + L P L +
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD 203
Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N L ++ +L+ +
Sbjct: 204 NNSL----------KKLPDLPLSLESIV 221
Score = 51.9 bits (125), Expect = 3e-08
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ E + N++E++ L L L + N +K+ L L +LE L V NY+
Sbjct: 214 PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT---LPDLPPSLEALNVRDNYL- 269
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVK 186
T + + L L +S N+ +E P+L L N + +
Sbjct: 270 -TDLPELPQSLTFLDVSENIFSGLSELP-----PNLYYLNASSNEI----------RSLC 313
Query: 187 KRLPNLKKLD 196
P+L++L+
Sbjct: 314 DLPPSLEELN 323
Score = 44.6 bits (106), Expect = 7e-06
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 25/131 (19%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
N L+ S+N I + L L+ L+++ N + L L LE L S+N++
Sbjct: 296 PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIE---LPALPPRLERLIASFNHLA 350
Query: 127 K-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEV 185
+ + LK L++ N + + P ++ + + L +EV
Sbjct: 351 EVPELPQ---NLKQLHVEYN------PLREFPDIPESVEDLRMNSHL----------AEV 391
Query: 186 KKRLPNLKKLD 196
+ NLK+L
Sbjct: 392 PELPQNLKQLH 402
Score = 43.1 bits (102), Expect = 2e-05
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 24/135 (17%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
L L + N+++ + L L+ L++ N + L L ++L L VS
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTD---LPELPQSLTFLDVSE 286
Query: 123 NYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N ++ L L S+N ++ PSL +L N L
Sbjct: 287 NIFSGLSELPP---NLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKL--------- 329
Query: 182 KSEVKKRLPNLKKLD 196
E+ P L++L
Sbjct: 330 -IELPALPPRLERLI 343
Score = 40.7 bits (96), Expect = 2e-04
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 23/123 (18%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF----------------AGLEP 110
E+L S N + ++ + LK L + N ++ F A +
Sbjct: 336 PPRLERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393
Query: 111 LAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
L + L++L V N + + ++ L M++ V + EF L D VF
Sbjct: 394 LPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFA-HETTDKLEDDVFEH 449
Query: 170 NPL 172
+
Sbjct: 450 HHH 452
Score = 40.0 bits (94), Expect = 2e-04
Identities = 19/151 (12%), Positives = 41/151 (27%), Gaps = 29/151 (19%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
S + ++ ++ L L + S L L LE L
Sbjct: 43 WSEWERNAPPGNGEQREMAVSRLRDCL-DRQAHELELNNLGLSS---LPELPPHLESLVA 98
Query: 121 SYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVK--------------LGECPSLIDL 165
S N + + + ++ L V + + + ++ L L +
Sbjct: 99 SCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKII 158
Query: 166 VFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N L ++ P+L+ +
Sbjct: 159 DVDNNSL----------KKLPDLPPSLEFIA 179
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 62.5 bits (152), Expect = 6e-12
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETL 115
+ + L+N L+L+ + +I L+ L KL L L+ N++ + F GL L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL----MHL 233
Query: 116 EELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNP 171
++LW+ + I+ ++ L + +++N + F L L + NP
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL---HHLERIHLHHNP 290
Query: 172 LV 173
Sbjct: 291 WN 292
Score = 57.1 bits (138), Expect = 4e-10
Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 23/140 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L N L L N + I L KLK L L N I+S F + +L L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI----PSLRRLD 166
Query: 120 VS-YNYIEK-TKGI-GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
+ + ++G + L+ L ++ ++E L L +L GN L
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL---IKLDELDLSGNHLSAIR 223
Query: 177 DDPLYKSEVKKRLPNLKKLD 196
+ L +L+KL
Sbjct: 224 PGSF------QGLMHLQKLW 237
Score = 52.1 bits (125), Expect = 3e-08
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
TN L+L N I+ I N L+ L++L L+RN+I++ F GL L L +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL----ANLNTLEL 119
Query: 121 SYNYIEK--TKGIGVMRKLKVLYMSNN 145
N + + KLK L++ NN
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNN 146
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 61.7 bits (150), Expect = 1e-11
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS-----FA 106
++ ++K L L N L +S N + + +K++ L+L+ I+
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431
Query: 107 GLEPL-------------AETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEF 153
LE L L+EL++S N ++ + L V+ +S N +K +
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDG 491
Query: 154 VKLGECPSLIDLVFCGNPLV 173
+ SL + NP
Sbjct: 492 I-FDRLTSLQKIWLHTNPWD 510
Score = 57.0 bits (138), Expect = 5e-10
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 20/146 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
L N + L L ++ I I G L L+ L L+ N++ S F L
Sbjct: 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL----S 98
Query: 114 TLEELWVSYNYI---EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170
+L+ L + N T + L+ L + N + SL +L
Sbjct: 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158
Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196
L Y+S+ K + ++ L
Sbjct: 159 SLRN------YQSQSLKSIRDIHHLT 178
Score = 54.7 bits (132), Expect = 3e-09
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 18/140 (12%)
Query: 66 VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
+ + L LS N I I L L+VL L + I + F L +LE L
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL----GSLEHL 79
Query: 119 WVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGM 176
+S N++ + G + LK L + N + +L L +
Sbjct: 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139
Query: 177 DDPLYKSEVKKRLPNLKKLD 196
+ L +L +L+
Sbjct: 140 RRIDFAG-----LTSLNELE 154
Score = 52.8 bits (127), Expect = 1e-08
Identities = 22/166 (13%), Positives = 52/166 (31%), Gaps = 25/166 (15%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEP 110
Q + + ++L +++++ + + + + LK L+ L L+ N +
Sbjct: 295 QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354
Query: 111 LAE----TLEELWVSYNYIEK-TKGIGV---MRKLKVLYMSNN-LVKEWAEFVKLGECPS 161
+ +L+ L +S N++ K + ++ L L +S N
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP---EK 411
Query: 162 LIDLVFCGNPLVEGMDDPLYK-----------SEVKKRLPNLKKLD 196
+ L + LP L++L
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457
Score = 50.5 bits (121), Expect = 9e-08
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 30/146 (20%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
+L + + S L+K+K +++ + + L ++LE L
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL----KSLEFLD 340
Query: 120 VSYN-----YIEKTKGIGVMRKLKVLYMSNN----LVKEWAEFVKLGECPSLIDLVFCGN 170
+S N Y++ + G L+ L +S N + K + L +L L N
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL---KNLTSLDISRN 397
Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196
M D ++ L+
Sbjct: 398 TFHP-MPDSCQW------PEKMRFLN 416
Score = 49.7 bits (119), Expect = 2e-07
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 59 KMDSSLAVLTNCEKLSLSTNMIEKINGLSG----LKKLKVLSLARNNIKS----FAGLEP 110
K + + + L LS N + + LK L L ++RN
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWP-- 409
Query: 111 LAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170
E + L +S I K + + L+VL +SNN + ++ F+ P L +L N
Sbjct: 410 --EKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFL-----PRLQELYISRN 461
Query: 171 PL 172
L
Sbjct: 462 KL 463
Score = 48.2 bits (115), Expect = 6e-07
Identities = 23/157 (14%), Positives = 47/157 (29%), Gaps = 28/157 (17%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS------ 104
++ IE + L + E L LS N + ++ L LK L+L N ++
Sbjct: 61 RINTIE--GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 105 FAGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVK--EWAEFVKLGEC 159
F L L+ L + + L L + ++ + +
Sbjct: 119 FPNL----TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI--- 171
Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ L + L +++ L+
Sbjct: 172 RDIHHLTLHLSES------AFLLEIFADILSSVRYLE 202
Score = 42.4 bits (100), Expect = 4e-05
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 18/142 (12%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAET------LEELWV 120
+C L + + +S L K++ +++ R +I F L+ ++ + V
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 121 SYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEW--AEFVKLGECPSLIDLVFCGNPL--VE 174
+ + ++ L+ L +S NL+ E G PSL LV N L ++
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 175 GMDDPLYKSEVKKRLPNLKKLD 196
+ L L NL LD
Sbjct: 378 KTGEIL------LTLKNLTSLD 393
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 61.6 bits (150), Expect = 1e-11
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 13/150 (8%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPL 111
+ F S T+ + L LS N + + + GL++L+ L +N+K +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 112 AE--TLEELWVSYNYIEKT--KGIGVMRKLKVLYMS-NNLVKEWAEFVKLGECPSLIDLV 166
L L +S+ + + L+VL M+ N+ + + + E +L L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLD 476
Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L + L +L+ L+
Sbjct: 477 LSQCQLEQLSPTAF------NSLSSLQVLN 500
Score = 56.6 bits (137), Expect = 7e-10
Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 13/120 (10%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
S + L LS I+ I L L L L N I+S F+GL +
Sbjct: 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----SS 101
Query: 115 LEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
L++L + + IG ++ LK L +++NL++ + +L L N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 56.2 bits (136), Expect = 1e-09
Identities = 34/165 (20%), Positives = 52/165 (31%), Gaps = 31/165 (18%)
Query: 56 FIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA--- 112
+++ + LTN SL + IE++ S + L L F L+ +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKR 329
Query: 113 -----------------ETLEELWVSYNYIEKT----KGIGVMRKLKVLYMSNNLVKEWA 151
+LE L +S N + + LK L +S N V
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-- 387
Query: 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L L F + L + M + V L NL LD
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNL-KQMSEF----SVFLSLRNLIYLD 427
Score = 53.5 bits (129), Expect = 9e-09
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLA----ET 114
D + L++ L L+ N I+ + SGL L+ L N+ LE +T
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA---SLENFPIGHLKT 125
Query: 115 LEELWVSYNYIEKTK---GIGVMRKLKVLYMSNN 145
L+EL V++N I+ K + L+ L +S+N
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 52.3 bits (126), Expect = 2e-08
Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 17/134 (12%)
Query: 71 EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLA----ETLEELWVSYNY 124
+ L LS N + + +L+VL L+R I+ +E A L L ++ N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNP 87
Query: 125 IEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
I+ + L+ L + E +G +L +L N + +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 183 SEVKKRLPNLKKLD 196
+ L NL+ LD
Sbjct: 147 N-----LTNLEHLD 155
Score = 49.6 bits (119), Expect = 2e-07
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK------SFAGLEPLAE 113
S L N L +S +GL L+VL +A N+ + F L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----R 470
Query: 114 TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNN 145
L L +S +E+ + L+VL MS+N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 45.0 bits (107), Expect = 6e-06
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEEL 118
L++ +KL + + + LK LK L++A N I+S F+ L LE L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHL 154
Query: 119 WVSYNYIEKTKG--IGVMRKLKVLYMSNNL 146
+S N I+ + V+ ++ +L +S +L
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Score = 44.6 bits (106), Expect = 9e-06
Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAET 114
L N L LS +E++ + L L+VL+++ NN + L +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN----S 519
Query: 115 LEELWVSYNYIEKTKGI------GVMRKLKVLYMSNN 145
L+ L S N+I L L ++ N
Sbjct: 520 LQVLDYSLNHI---MTSKKQELQHFPSSLAFLNLTQN 553
Score = 43.1 bits (102), Expect = 3e-05
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 17/144 (11%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--------LSGLKKLKVLSLARNNIKSFAGLEPLA 112
+ L L++ + ++ + L + SL I+
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304
Query: 113 ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ L + + + ++ LK L ++N V L PSL L N L
Sbjct: 305 -GWQHLELVNCKFGQFPTL-KLKSLKRLTFTSNKGGNAFSEVDL---PSLEFLDLSRNGL 359
Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
+ +LK LD
Sbjct: 360 SFKGCCS----QSDFGTTSLKYLD 379
Score = 39.6 bits (93), Expect = 3e-04
Identities = 24/116 (20%), Positives = 37/116 (31%), Gaps = 26/116 (22%)
Query: 92 LKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSN 144
K L L+ N ++ SF L+ L +S I+ + L L ++
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85
Query: 145 N----LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N L SL LV L + P+ L LK+L+
Sbjct: 86 NPIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPI------GHLKTLKELN 130
Score = 33.8 bits (78), Expect = 0.028
Identities = 27/182 (14%), Positives = 48/182 (26%), Gaps = 49/182 (26%)
Query: 52 LQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAGL 108
L + + + KL+L N + GL L+V L ++ L
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Query: 109 EPLAET----------------------------------LEELWVSYNYIEKTKGIGVM 134
E ++ + + IE+ K
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303
Query: 135 RKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKK 194
+ L + N + + SL L F N + + LP+L+
Sbjct: 304 FGWQHLELVNCKFGQ----FPTLKLKSLKRLTFTSN--------KGGNAFSEVDLPSLEF 351
Query: 195 LD 196
LD
Sbjct: 352 LD 353
Score = 32.7 bits (75), Expect = 0.070
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 111 LAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
L + + L +S+N + +L+VL +S + + E L L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILT 84
Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
GNP+ L +L+KL
Sbjct: 85 GNPIQSLALGAF------SGLSSLQKLV 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 61.2 bits (149), Expect = 2e-11
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 19/147 (12%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
D + A TN +L L +N I+KI N K L L L+ N + S L E
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL----E 145
Query: 114 TLEELWVSYNYIEKTK----GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
L+EL +S N I+ K I LK L +S+N +KE++ L L
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNN 204
Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L + + L +++ L
Sbjct: 205 VQLGPSLTEKLCLEL---ANTSIRNLS 228
Score = 61.2 bits (149), Expect = 2e-11
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAET 114
++ + L + N I K+ L LKVL+L N + +FA
Sbjct: 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC----TN 98
Query: 115 LEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
L EL + N I+K + L L +S+N + + + +L +L+ N +
Sbjct: 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKI 157
Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
+ L +LKKL+
Sbjct: 158 QALKSEELDIFA----NSSLKKLE 177
Score = 57.3 bits (139), Expect = 4e-10
Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 19/147 (12%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK-------SFAGLEPL 111
D S L E L++ N I I +GL LK LSL+ + +F L
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381
Query: 112 AETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
L L ++ N I K + L+VL + N + + + ++ ++
Sbjct: 382 P--LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439
Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N ++ + +P+L++L
Sbjct: 440 NKYLQLTRNSF------ALVPSLQRLM 460
Score = 55.0 bits (133), Expect = 3e-09
Identities = 35/157 (22%), Positives = 57/157 (36%), Gaps = 19/157 (12%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----F 105
++ ++ S L N L LS N I I + L GL+KL++L L NN+
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524
Query: 106 AGLEPLA----ETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
G L L + N ++ + + +LK++ + N + V
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV-FNNQ 583
Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
SL L N + + K NL +LD
Sbjct: 584 VSLKSLNLQKNLITS-----VEKKVFGPAFRNLTELD 615
Score = 54.6 bits (132), Expect = 4e-09
Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 19/150 (12%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIK-----SFAGLEPLA 112
+ + L + E L L N I + GL+ + + L+ N SFA +
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV---- 453
Query: 113 ETLEELWVSYNYIEK----TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
+L+ L + ++ +R L +L +SNN + + + L L L
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQ 512
Query: 169 GNPL--VEGMDDPLYKSEVKKRLPNLKKLD 196
N L + +P K L +L L+
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Score = 53.9 bits (130), Expect = 7e-09
Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 18/151 (11%)
Query: 61 DSSLAVLTNCEKLSLSTNMI-----EKINGLSGLKKLKVLSLARNNIKS-----FAGLEP 110
+ L L+ + EK+ ++ LSL+ + + + F GL+
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247
Query: 111 LAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
L L +SYN + + +L+ ++ N ++ L ++ L
Sbjct: 248 T--NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLK 304
Query: 169 GNPLVEGMDD---PLYKSEVKKRLPNLKKLD 196
+ + + P + L L+ L+
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335
Score = 50.4 bits (121), Expect = 1e-07
Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 26/151 (17%)
Query: 62 SSLAVLT---NCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK-----SFAGLEPL 111
++ L + K S+S + KI+ LK L+ L++ N+I F GL
Sbjct: 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--- 352
Query: 112 AETLEELWVSYNYIEKTKGIG------VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165
L+ L +S ++ L +L ++ N + + L L
Sbjct: 353 -INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-FSWLGHLEVL 410
Query: 166 VFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N + + + + + L N+ ++
Sbjct: 411 DLGLNEIGQELT-----GQEWRGLENIFEIY 436
Score = 46.9 bits (112), Expect = 1e-06
Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI----------NGLSGLKKLKVLSLARNNIK-----SF 105
D L L E L L N + ++ L GL L +L+L N F
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556
Query: 106 AGLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLI 163
L L+ + + N + LK L + NL+ + V +L
Sbjct: 557 KDL----FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612
Query: 164 DLVFCGNPL 172
+L NP
Sbjct: 613 ELDMRFNPF 621
Score = 42.7 bits (101), Expect = 3e-05
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 71 EKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNY 124
E S + ++ + L + VL+L N ++ +F L L V +N
Sbjct: 7 EVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRY----SQLTSLDVGFNT 60
Query: 125 IEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
I K + + LKVL + +N + + ++ C +L +L N + + ++P
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKT-FAFCTNLTELHLMSNSIQKIKNNPF-- 117
Query: 183 SEVKKRLPNLKKLD 196
+ NL LD
Sbjct: 118 ----VKQKNLITLD 127
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 60.8 bits (148), Expect = 3e-11
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 24/153 (15%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK------SFAGL 108
+ ++ S L L+ +KL LS N E + S L LS+ N + L
Sbjct: 290 LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349
Query: 109 EPLAETLEELWVSYNYIEK----TKGIGVMRKLKVLYMSNN-LVKEWAEFVKLGECPSLI 163
E L EL +S++ IE + + L+ L +S N + E ECP L
Sbjct: 350 ----ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLE 403
Query: 164 DLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L L + D + L LK L+
Sbjct: 404 LLDLAFTRL-KVKDAQ----SPFQNLHLLKVLN 431
Score = 58.9 bits (143), Expect = 1e-10
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 20/146 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAET 114
++ + ++L L+ + ++ +GL GL LK L L+ N + S + +
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF----PS 326
Query: 115 LEELWVSYNYIE---KTKGIGVMRKLKVLYMSNN-LVKEWAEFVKLGECPSLIDLVFCGN 170
L L + N T + + L+ L +S++ + ++L L L N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ K+E K P L+ LD
Sbjct: 387 EPLS------LKTEAFKECPQLELLD 406
Score = 58.5 bits (142), Expect = 2e-10
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
++ + L N L L+ I I + +L L L N + +G +
Sbjct: 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP----KA 106
Query: 115 LEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
L+ L+ I + + L+ LY+ +N + + K L L F N +
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAI 165
Query: 173 VE 174
Sbjct: 166 HY 167
Score = 54.6 bits (132), Expect = 3e-09
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----F 105
Q+ +I + + + L L+ N + + LSG K LK L + I S
Sbjct: 68 QIYWIH--EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125
Query: 106 AGLEPLAETLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNN 145
+TLE L++ N+I K KLKVL NN
Sbjct: 126 HNQ----KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Score = 54.6 bits (132), Expect = 4e-09
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEP 110
++ + + L L++ + L+LS N + +L++L LA +K P
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 111 LA--ETLEELWVSYNYIE--KTKGIGVMRKLKVLYMSNNLVKEWAEFVK--LGECPSLID 164
L+ L +S++ ++ + + L+ L + N + L L
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480
Query: 165 LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
LV L L + +D
Sbjct: 481 LVLSFCDLSSIDQHAF------TSLKMMNHVD 506
Score = 53.5 bits (129), Expect = 8e-09
Identities = 27/135 (20%), Positives = 41/135 (30%), Gaps = 20/135 (14%)
Query: 71 EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYN 123
E L S N++ I S L L L L R I +F L+ L ++ N
Sbjct: 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ----HRLDTLVLTAN 91
Query: 124 YIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
+ + + LK L+ + L +L L N + +
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGF 150
Query: 182 KSEVKKRLPNLKKLD 196
LK LD
Sbjct: 151 P------TEKLKVLD 159
Score = 50.0 bits (120), Expect = 1e-07
Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 38/173 (21%)
Query: 56 FIEKMDSSLAVLTNCEKLSLSTN--MIEKINGLSG--LKKLKVLSLARNNIKS-----FA 106
I ++ + L+ ++ GL ++ L + + + + F
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249
Query: 107 GLEPLA----------------------ETLEELWVSYNYIEK-TKGIGVMRKLKVLYMS 143
GL ++ L+EL ++ ++ + G+ + LK L +S
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS 309
Query: 144 NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N + + PSL L GN + + + L NL++LD
Sbjct: 310 ANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELG-----TGCLENLENLRELD 356
Score = 43.9 bits (104), Expect = 2e-05
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 16/123 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI-----NGLSGLKKLKVLSLARNNIKS-----FAGLEP 110
+ L + L+L N K N L L +L++L L+ ++ S F L
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-- 499
Query: 111 LAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
+ + + +S+N + + K L +++N + + L +
Sbjct: 500 --KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL-LPILSQQRTINLRQ 556
Query: 170 NPL 172
NPL
Sbjct: 557 NPL 559
Score = 41.5 bits (98), Expect = 8e-05
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 92 LKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSN 144
+ L + N + +F+ L L L ++ I +L L ++
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRL----INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90
Query: 145 NLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N + AE L +L L F + PL L+ L
Sbjct: 91 NPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPL------HNQKTLESLY 135
Score = 35.0 bits (81), Expect = 0.011
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 11/106 (10%)
Query: 93 KVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEW 150
K + + G L + E L S+N + + L L ++ +
Sbjct: 15 KTYNCENLGLNEIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72
Query: 151 AEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
E L LV NPL+ + L LK L
Sbjct: 73 HEDT-FQSQHRLDTLVLTANPLIFMAETAL------SGPKALKHLF 111
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 60.7 bits (147), Expect = 3e-11
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS----FAGLEPLAETL 115
+ L ++ LS N +EKI + +++L+ L ++ N + + + TL
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI----PTL 303
Query: 116 EELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ L +S+N++ + +L+ LY+ +N + +KL +L +L N
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT----LKLSTHHTLKNLTLSHNDW 357
Score = 56.9 bits (137), Expect = 6e-10
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 66 VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
V L L N + L L + L+ N ++ F + + LE L++
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM----QRLERLYI 285
Query: 121 SYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
S N + + LKVL +S+N + + L +L N +V
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVT 338
Score = 55.7 bits (134), Expect = 2e-09
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWV 120
D + T+ + L LS+N + ++ LS + L +++ N + + A +EEL
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPI----AVEELDA 218
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
S+N I +G V +L +L + +N + + A + P L+++ N L + M P
Sbjct: 219 SHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNY---PGLVEVDLSYNELEKIMYHPF 274
Query: 181 YKSEVKKRLPNLKKLD 196
++ L++L
Sbjct: 275 ------VKMQRLERLY 284
Score = 53.0 bits (127), Expect = 1e-08
Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
+ L L N + + KL LS++ NN++ F
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT----T 171
Query: 114 TLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+L+ L +S N + + ++ L +S NL+ L ++ +L N +
Sbjct: 172 SLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSI 223
Score = 52.6 bits (126), Expect = 2e-08
Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 20/139 (14%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L N + ++ + + K+ L +++++L+L I+ FA T+++L+
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLY 105
Query: 120 VSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
+ +N I + + L VL + N + + P L L N L ++
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLER-IE 163
Query: 178 DPLYKSEVKKRLPNLKKLD 196
D +++ +L+ L
Sbjct: 164 DDTFQA-----TTSLQNLQ 177
Score = 51.1 bits (122), Expect = 5e-08
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
+ L E L+L+ IE+I + ++ L + N I+ F +
Sbjct: 68 AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV----P 123
Query: 114 TLEELWVSYNYIEK-TKGI-GVMRKLKVLYMSNN 145
L L + N + +GI KL L MSNN
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Score = 43.8 bits (103), Expect = 2e-05
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
+ ++ + + L LS N + + +L+ L L N+I + TL
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTL 347
Query: 116 EELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
+ L +S+N + + R + + +
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARPAVDDA 377
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 59.8 bits (145), Expect = 6e-11
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 16/122 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETL 115
+ + L N + L+L I+ + L+ L L+ L ++ N+ F GL +L
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL----SSL 244
Query: 116 EELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNP 171
++LWV + + + L L +++N + F L L++L NP
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL---RYLVELHLHHNP 301
Query: 172 LV 173
Sbjct: 302 WN 303
Score = 57.4 bits (139), Expect = 3e-10
Identities = 44/191 (23%), Positives = 62/191 (32%), Gaps = 49/191 (25%)
Query: 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSL 97
GIP S + + L I+ + + + L + E L L N I +I +GL L L L
Sbjct: 72 GIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130
Query: 98 ARNNIKS-----FAGLEPLAETLEELWVSYNYIEK-------------------TKGIGV 133
N + F L L ELW+ N IE K +
Sbjct: 131 FDNWLTVIPSGAFEYL----SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 134 --------MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEV 185
+ LK L + +K+ L L +L GN E
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL---VGLEELEMSGNHFPEIRPGSF----- 238
Query: 186 KKRLPNLKKLD 196
L +LKKL
Sbjct: 239 -HGLSSLKKLW 248
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 59.7 bits (145), Expect = 6e-11
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
S + L LS I+ I L L L L N I+S F+GL
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL----S 100
Query: 114 TLEELWVSYNYIEKTKG--IGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
+L++L + + IG ++ LK L +++NL++ + +L L N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 172 L 172
+
Sbjct: 161 I 161
Score = 56.6 bits (137), Expect = 6e-10
Identities = 30/152 (19%), Positives = 55/152 (36%), Gaps = 17/152 (11%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPL 111
+ F S T+ + L LS N + + + GL++L+ L +N+K +
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417
Query: 112 AE--TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKE---WAEFVKLGECPSLID 164
L L +S+ + + L+VL M+ N +E F +L +L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL---RNLTF 474
Query: 165 LVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L L + L +L+ L+
Sbjct: 475 LDLSQCQLEQLSPTAF------NSLSSLQVLN 500
Score = 56.3 bits (136), Expect = 8e-10
Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 12/149 (8%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKIN---GLSGLKKLKVLSLARNNIKS-----FAGLEPLA 112
+ + L ++L+++ N+I+ S L L+ L L+ N I+S L +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 113 ETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
L +S N + G +L L + NN + V L L
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF---DSLNVMKTCIQGLAGLEVHRLV 233
Query: 172 LVEGMDDPLYKSEVKKRLPNLKKLDGEVL 200
L E ++ + K L L L E
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Score = 56.3 bits (136), Expect = 1e-09
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIK-------SFAGLEPLAETLEELW 119
L + ++L+ ++N L L+ L L+RN + S G +L+ L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT----TSLKYLD 379
Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
+S+N + + + +L+ L ++ +K+ +EF +LI L +
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 179 PLYKSEVKKRLPNLKKLD 196
L +L+ L
Sbjct: 440 IFNG------LSSLEVLK 451
Score = 55.5 bits (134), Expect = 2e-09
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 67 LTNCEKLSLSTNMIEKIN--GLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEEL 118
L N L +S +GL L+VL +A N+ + F L L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----RNLTFL 475
Query: 119 WVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+S +E+ + + L+VL M++N +K + + SL + NP
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNPW 530
Score = 55.5 bits (134), Expect = 2e-09
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 19/138 (13%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
+ + L LS N + + +L+VL L+R I++ + L L L +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL----SHLSTLIL 83
Query: 121 SYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
+ N I+ + L+ L + F +G +L +L N +
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQS---- 138
Query: 179 PLYKSEVKKRLPNLKKLD 196
E L NL+ LD
Sbjct: 139 -FKLPEYFSNLTNLEHLD 155
Score = 54.7 bits (132), Expect = 3e-09
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAG--L 108
++Q IE D + L++ L L+ N I+ + SGL L+ L N+ S +
Sbjct: 63 EIQTIE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 109 EPLAETLEELWVSYNYIEKTK---GIGVMRKLKVLYMSNN 145
L L+EL V++N I+ K + L+ L +S+N
Sbjct: 121 GHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Score = 52.8 bits (127), Expect = 1e-08
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGL 108
+ M S+ L E L + ++++ + L+ L L ++ + + F GL
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 109 EPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLI 163
+LE L ++ N ++ + +R L L +S +++ + F L SL
Sbjct: 445 ----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---SSLQ 497
Query: 164 DLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L N L + + D ++ RL +L+K+
Sbjct: 498 VLNMASNQL-KSVPDGIF-----DRLTSLQKIW 524
Score = 38.2 bits (89), Expect = 0.001
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 59 KMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKV----LSLARNNIKS-----FAG 107
K+ + LTN E L LS+N I+ I L L ++ + L L+ N + F
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 108 LEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
+ L +L + N+ ++ L L + ++ E+ L
Sbjct: 200 I-----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243
Score = 34.7 bits (80), Expect = 0.014
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 18/141 (12%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLA----ETL 115
+ L V + +EK + L GL L + + + +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284
Query: 116 EELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
+ IE+ K + L + N + + SL L F N
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ----FPTLKLKSLKRLTFTSN----- 335
Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
+ + LP+L+ LD
Sbjct: 336 ---KGGNAFSEVDLPSLEFLD 353
Score = 29.3 bits (66), Expect = 0.96
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 111 LAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVK--EWAEFVKLGECPSLIDLV 166
L + + L +S+N + + +L+VL +S ++ E + L L L+
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLI 82
Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
GNP+ L +L+KL
Sbjct: 83 LTGNPIQS------LALGAFSGLSSLQKLV 106
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 58.9 bits (143), Expect = 1e-10
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 66 VLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
+ +L L N I+ I L KL L L N I+ + L TL EL
Sbjct: 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL----PTLREL 246
Query: 119 WVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKE-----WAEFVKLGECPSLIDLVFCGNPL 172
+ N + + G+ ++ L+V+Y+ N + + + + + NP+
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Score = 53.5 bits (129), Expect = 7e-09
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
L + L L N I KI S L+KL+ L +++N++ L +L EL
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP--PNLPSSLVEL 128
Query: 119 WVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKE 149
+ N I K KG+ +R + + M N ++
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161
Score = 53.1 bits (128), Expect = 1e-08
Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEE 117
L + +L L N I I LS L L+ L L N + AGL L + L+
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL-KLLQV 268
Query: 118 LWVSYNYIEK--------TKGIGVMRKLKVLYMSNNLVKEW 150
+++ N I K + + NN V W
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309
Score = 52.3 bits (126), Expect = 2e-08
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 14/98 (14%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAET 114
+ SL+ L +L L N + ++ GL LK L+V+ L NNI F + +
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293
Query: 115 --LEELWVSYNYIEKTKGIGV-----MRKLKVLYMSNN 145
+ + N + + + + N
Sbjct: 294 AYYNGISLFNNPV-PYWEVQPATFRCVTDRLAIQFGNY 330
Score = 50.8 bits (122), Expect = 5e-08
Identities = 36/157 (22%), Positives = 62/157 (39%), Gaps = 38/157 (24%)
Query: 66 VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-------FAGL-------- 108
+ ++ +L + N I K+ SGL+ + + + N +++ F GL
Sbjct: 121 LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180
Query: 109 --------EPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGE 158
+ L ETL EL + +N I+ + + KL L + +N ++ L
Sbjct: 181 EAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-LSF 239
Query: 159 CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKL 195
P+L +L N L S V LP+LK L
Sbjct: 240 LPTLRELHLDNNKL----------SRVPAGLPDLKLL 266
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 58.7 bits (142), Expect = 2e-10
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 34/160 (21%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK-----SFAGLEPLAE 113
L + + L+L+ N I KI GL L+VL+L+ N + +F GL
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL----P 338
Query: 114 TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
+ + + N+I + + KL+ L + +N + PS+ D+ GN
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN------ALTTIHFIPSIPDIFLSGNK 392
Query: 172 LVEGMDDPLYKSEVK---------------KRLPNLKKLD 196
LV L + + R+P+L+ L
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432
Score = 54.8 bits (132), Expect = 3e-09
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 22/157 (14%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAE----- 113
S+ L + L N I I L+KL+ L L N + + + + +
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 114 -----------TLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGEC 159
T + +S N +E + + L++L ++ N + E
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
PSL L N L + + +V + L +L+ L
Sbjct: 451 PSLEQLFLGENML-QLAWETELCWDVFEGLSHLQVLY 486
Score = 54.0 bits (130), Expect = 5e-09
Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 67 LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIK------SFAGLEPLAETLEEL 118
L E+L LS N I + L++L++L L +F L L L
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNL----PNLRIL 78
Query: 119 WVSYNYIEK--TKGIGVMRKLKVLYMS-NNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
+ + I + L L + L + +L L N +
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS- 137
Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
LY +L +LK +D
Sbjct: 138 ----LYLHPSFGKLNSLKSID 154
Score = 53.3 bits (128), Expect = 1e-08
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 16/124 (12%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGLEPLA 112
SS L + L L + L L++L L + I F GL
Sbjct: 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL---- 96
Query: 113 ETLEELWVSYNYIEK----TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
L EL + + + ++ L L +S N ++ G+ SL + F
Sbjct: 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156
Query: 169 GNPL 172
N +
Sbjct: 157 SNQI 160
Score = 49.8 bits (119), Expect = 2e-07
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 14/117 (11%)
Query: 67 LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
++ L LS + +N LK LKVL+LA N I F GL + L+ L
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL----DNLQVLN 320
Query: 120 VSYNYIEKTKGI--GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
+SYN + + + K+ + + N + + L L N L
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDLRDNALTT 376
Score = 47.5 bits (113), Expect = 9e-07
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 29/144 (20%)
Query: 69 NCEKLSLSTNMIEKINGLS---GLKKLKVLSLARNNIKS------FAGLEPLAETLEELW 119
+ LS N +E ++ L + L++L L +N S + +LE+L+
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP----SLEQLF 457
Query: 120 VSYNYIEKTKGIGV-------MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ N ++ + + L+VLY+++N + V +L L N L
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FSHLTALRGLSLNSNRL 516
Query: 173 VEGMDDPLYKSEVKKRLPNLKKLD 196
+ L NL+ LD
Sbjct: 517 TVLSHNDL--------PANLEILD 532
Score = 47.1 bits (112), Expect = 1e-06
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW 119
L++ + L L+ N + + S L L+ LSL N + + L LE L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH-NDLPANLEILD 532
Query: 120 VSYNYIEKTKGIGVMRKLKVLYMSNN 145
+S N + V L VL +++N
Sbjct: 533 ISRNQLLAPNP-DVFVSLSVLDITHN 557
Score = 45.6 bits (108), Expect = 4e-06
Identities = 22/133 (16%), Positives = 34/133 (25%), Gaps = 18/133 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKIN---GLSGLKKLKVLSLARNNIK-----SFAGLEPLA 112
D L +L LS N I + L LK + + N I L+
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK- 174
Query: 113 ETLEELWVSYNYI--------EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLID 164
TL ++ N + K L++L +S N
Sbjct: 175 -TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 165 LVFCGNPLVEGMD 177
+ G
Sbjct: 234 FSLILAHHIMGAG 246
Score = 42.5 bits (100), Expect = 5e-05
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 21/127 (16%)
Query: 82 KINGLS----GLKKLKVLSLARNNIK-----SFAGLEPLAETLEELWVSYNYIEKTKGIG 132
+ L+ L + L L+ N I+ SF L E L+ L + Y T
Sbjct: 12 RFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFL----EQLQLLELGSQYTPLTIDKE 67
Query: 133 V---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL 189
+ L++L + ++ + L +L L + + + L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFCGLSDAVLKD----GYFRNL 122
Query: 190 PNLKKLD 196
L +LD
Sbjct: 123 KALTRLD 129
Score = 34.8 bits (80), Expect = 0.014
Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
LT LSL++N + ++ L++L ++RN + + + +L L +++N
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN--PDVFVSLSVLDITHNKFI 560
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSL 162
+ L +N + + S
Sbjct: 561 CECELSTFINW--LNHTNVTIAGPPADIYCVYPDSF 594
Score = 34.8 bits (80), Expect = 0.015
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 59 KMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGL--KKLKVLSLARNNIKS------FAGL 108
+ S L + + + S+N I + + L L K L SLA N++ S +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 109 EPLAE-TLEELWVSYNYI 125
P LE L VS N
Sbjct: 199 NPFRNMVLEILDVSGNGW 216
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 58.1 bits (141), Expect = 2e-10
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 29/132 (21%)
Query: 66 VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE------- 113
V L L N + L L + L+ N ++ F ++ L
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 114 ------------TLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECP 160
TL+ L +S+N++ + +L+ LY+ +N + +KL
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT----LKLSTHH 339
Query: 161 SLIDLVFCGNPL 172
+L +L N
Sbjct: 340 TLKNLTLSHNDW 351
Score = 55.8 bits (135), Expect = 1e-09
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S+LA+ E+L S N I + G +L +L L NN+ A L L E+ +S
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPG-LVEVDLS 256
Query: 122 YNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDP 179
YN +EK M++L+ LY+SNN + + P+L L N L
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHNHL------- 307
Query: 180 LYKSEVKKRLPNLKKL 195
V++ P +L
Sbjct: 308 ---LHVERNQPQFDRL 320
Score = 54.7 bits (132), Expect = 3e-09
Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 20/139 (14%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L N + ++ + + K+ L +++++L+L I+ FA T+++L+
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLY 99
Query: 120 VSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
+ +N I + + L VL + N + + P L L N L ++
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-FHNTPKLTTLSMSNNNLER-IE 157
Query: 178 DPLYKSEVKKRLPNLKKLD 196
D +++ +L+ L
Sbjct: 158 DDTFQA-----TTSLQNLQ 171
Score = 53.9 bits (130), Expect = 6e-09
Identities = 29/121 (23%), Positives = 43/121 (35%), Gaps = 17/121 (14%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
+ A +KL + N I + + L VL L RN++ S F
Sbjct: 86 TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT----P 141
Query: 114 TLEELWVSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
L L +S N +E+ L+ L +S+N + V L PSL N
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----VDLSLIPSLFHANVSYNL 197
Query: 172 L 172
L
Sbjct: 198 L 198
Score = 52.0 bits (125), Expect = 2e-08
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING-LSGLKKLKVLSLARNNIKSF-AGLEPLAETLEEL 118
+ E+L +S N + +N + LKVL L+ N++ + LE L
Sbjct: 265 YHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF-DRLENL 323
Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNN 145
++ +N I T + LK L +S+N
Sbjct: 324 YLDHNSI-VTLKLSTHHTLKNLTLSHN 349
Score = 50.8 bits (122), Expect = 6e-08
Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 13/134 (9%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
L+++ + ++S N++ L+ ++ L + N+I P+ L L + +
Sbjct: 181 DLSLIPSLFHANVSYNLLST---LAIPIAVEELDASHNSINVVR--GPVNVELTILKLQH 235
Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYK 182
N + T + L + +S N +++ + L L N LV ++
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVA-LNLYG-- 291
Query: 183 SEVKKRLPNLKKLD 196
+ +P LK LD
Sbjct: 292 ----QPIPTLKVLD 301
Score = 48.1 bits (115), Expect = 5e-07
Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 20/145 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGLS--GLKKLKVLSLARNNIKS-----FAGLEPLAE 113
DS+L + + + G L K+++ + ++
Sbjct: 14 DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF----R 69
Query: 114 TLEELWVSYNYIE--KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
+E L ++ IE T ++ LYM N ++ V P L LV N
Sbjct: 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-FQNVPLLTVLVLERND 128
Query: 172 LVEGMDDPLYKSEVKKRLPNLKKLD 196
L + P L L
Sbjct: 129 LSS------LPRGIFHNTPKLTTLS 147
Score = 44.3 bits (105), Expect = 1e-05
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETL 115
+ ++ + + L LS N + + +L+ L L N+I + L TL
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTH-HTL 341
Query: 116 EELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
+ L +S+N + + R + + +
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARPAVDDA 371
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 58.2 bits (141), Expect = 2e-10
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
+ + LT KL ++N I ++ LS L L+ N + + + PL + L L
Sbjct: 58 TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTK-LTYLNCD 114
Query: 122 YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLY 181
N + + L L + N + E + + L +L N + +D
Sbjct: 115 TNKL-TKLDVSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKITKLDV--- 166
Query: 182 KSEVKKRLPNLKKLD 196
L LD
Sbjct: 167 -----TPQTQLTTLD 176
Score = 53.9 bits (130), Expect = 6e-09
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWV 120
S L L + I + G+ L L L NNI + + L L
Sbjct: 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQN----TNLTYLAC 92
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
N + + + KL L N + + + + + P L L N L E
Sbjct: 93 DSNKLTNLD-VTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTE 141
Score = 48.5 bits (116), Expect = 3e-07
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 7/110 (6%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
++ T +L N ++ +L L + N I + L L
Sbjct: 143 DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQNKL-LNRLNCDT 200
Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
N I + +L L S+N + E + + L NPL
Sbjct: 201 NNIT-KLDLNQNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPL 245
Score = 47.4 bits (113), Expect = 8e-07
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
LT S N + +++ +S L KL L + ++ L
Sbjct: 232 LTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQ--LIYFQAEGCRKI 288
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
K + +L +L + E + L + P L+ L L E
Sbjct: 289 KELDVTHNTQLYLLDCQAAGITE----LDLSQNPKLVYLYLNNTELTE 332
Score = 45.8 bits (109), Expect = 3e-06
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 10/114 (8%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWV 120
L T K ++ +L +L I + L L++
Sbjct: 270 DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN----PKLVYLYL 325
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
+ + + + KLK L N ++ +F +G+ P+L + +
Sbjct: 326 NNTELTELD-VSHNTKLKSLSCVNAHIQ---DFSSVGKIPALNNNFEAEGQTIT 375
Score = 33.9 bits (78), Expect = 0.031
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF 105
T + LS I+ + + + L A +
Sbjct: 338 NTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITM 376
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 57.3 bits (139), Expect = 3e-10
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 21/147 (14%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS----FAGLEPLA 112
LT KLSLS+N + G LK L L+ N + + F GL
Sbjct: 45 HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL---- 100
Query: 113 ETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
E LE L ++ +++ V +R L L +S+ + + SL L G
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAG 159
Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N E ++ L NL LD
Sbjct: 160 NSFQENFLP-----DIFTELRNLTFLD 181
Score = 56.2 bits (136), Expect = 7e-10
Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 21/154 (13%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS------F 105
+ F S T+ + L LS N + + + GL++L+ L +N+K F
Sbjct: 63 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 122
Query: 106 AGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSL 162
L L L +S+ + + G+ + L+VL M+ N +E E +L
Sbjct: 123 LSL----RNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 163 IDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L L + L +L+ L+
Sbjct: 178 TFLDLSQCQLEQLSPTAF------NSLSSLQVLN 205
Score = 54.2 bits (131), Expect = 3e-09
Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 66 VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAET----LEELW 119
+ ++ +L L +N ++ + L +L LSL+ N + SF G ++ L+ L
Sbjct: 26 IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLD 84
Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
+S+N + + + +L+ L ++ +K+ +EF +LI L +
Sbjct: 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 179 PLYKSEVKKRLPNLKKLD 196
L +L+ L
Sbjct: 145 IF------NGLSSLEVLK 156
Score = 46.9 bits (112), Expect = 1e-06
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 14/116 (12%)
Query: 67 LTNCEKLSLSTN-MIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
L++ E L ++ N E + + L+ L L L++ ++ F L +L+ L
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL----SSLQVL 204
Query: 119 WVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+S+N T + L+VL S N + + SL L N
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 57.7 bits (140), Expect = 3e-10
Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 20/148 (13%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIK----SFAGLEPLAET 114
+ V + + + N ++ L +KKL +L N ++ +F L
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL--- 355
Query: 115 LEELWVSYNYIEKTKGI-----GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
L ++YN I I G +++ L ++N +K + + F
Sbjct: 356 -ASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411
Query: 170 NPLVEGMDDPLYK-SEVKKRLPNLKKLD 196
N + + N+ ++
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Score = 51.6 bits (124), Expect = 4e-08
Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 25/171 (14%)
Query: 42 IPISEAKEVGLQM-QFIEKMDSSLAVLTNCEKLSLS-TNMIEKI-NGLSGLKKLKVLSLA 98
+ + Q + D L + + + + K+ L L +++++++A
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281
Query: 99 RNNIKSFAGLE---------PLAETLEELWVSYNYIE---KTKGIGVMRKLKVLYMSNN- 145
N S L+ P+ E ++ +++ YN ++ + M+KL +L N
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
Query: 146 LVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L + F G L L N + E + ++ L
Sbjct: 342 LEGKLPAF---GSEIKLASLNLAYNQITEI------PANFCGFTEQVENLS 383
Score = 48.9 bits (117), Expect = 3e-07
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 51 GLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSF--- 105
+ + + +D + N ++LS N I K S L ++L N +
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475
Query: 106 -AGLEPLA----ETLEELWVSYNYIEK---TKGIGVMRKLKVLYMSNN 145
E L + + +N + K + L + +S N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523
Score = 43.5 bits (103), Expect = 2e-05
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 51 GLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSF-- 105
+ ++ + + + L N + K+ + L L + L+ N+ F
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530
Query: 106 -----AGLEPLAETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNN 145
+ L+ + N + +GI + L L + +N
Sbjct: 531 QPLNSSTLKGF-GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Score = 43.1 bits (102), Expect = 2e-05
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 19/125 (15%)
Query: 67 LTNCEKLSLSTNMIEKING---------LSGLKKLKVLSLARNNIKSF-AGLEPLAETLE 116
++ + S N I ++G + ++L+ N I F L L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 117 ELWVSYNYIE---------KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVF 167
+ + N + + + L + + N + + ++ + P L+ +
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 168 CGNPL 172
N
Sbjct: 521 SYNSF 525
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 22/126 (17%)
Query: 55 QFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI-----KSFAGLE 109
F+ + N E K + L L + + L
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLK---DLTDVEVYNCPNLTKLPTFLKAL- 272
Query: 110 PLAETLEELWVSYNYI----------EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
++ + V+ N + V K++++Y+ N +K + L +
Sbjct: 273 ---PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329
Query: 160 PSLIDL 165
L L
Sbjct: 330 KKLGML 335
Score = 35.0 bits (81), Expect = 0.012
Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNN-IKSFAGLEPLAET 114
++ LT E L+L ++ + G+S + R + K+F +P +
Sbjct: 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158
Query: 115 --LEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGN 170
L + ++ + +K+ K + K + +N + ++ + L +
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMGNS 216
Query: 171 PLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
P V +++E + K D +
Sbjct: 217 PFVAENICEAWENENSEYAQQYKTEDLK 244
Score = 31.2 bits (71), Expect = 0.24
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 55 QFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF--AGLEPLA 112
+ + + + + + +L + +N I K+N + VL + N S + + P
Sbjct: 553 RTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNISIDLSYVCPYI 611
Query: 113 ETLEELWVSYNYIEKTKG 130
E + Y+ + +G
Sbjct: 612 E-AGMYMLFYDKTQDIRG 628
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 54.6 bits (132), Expect = 2e-09
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 6/93 (6%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
D L N L L N I KI + L KL+ L L++N +K E + +TL+EL
Sbjct: 69 DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP--EKMPKTLQEL 126
Query: 119 WVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKE 149
V N I K K + + ++ V+ + N +K
Sbjct: 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Score = 52.7 bits (127), Expect = 1e-08
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 21/142 (14%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKSFAGLEPLA-ETL 115
S L + L TN ++ G+KKL + +A NI + + +L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT---IPQGLPPSL 194
Query: 116 EELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
EL + N I K + + L L +S N + L P L +L N L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKL- 252
Query: 174 EGMDDPLYKSEVKKRLPNLKKL 195
+V L + K +
Sbjct: 253 ---------VKVPGGLADHKYI 265
Score = 49.2 bits (118), Expect = 2e-07
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE- 113
+ SLA + +L L+ N + K+ GL+ K ++V+ L NNI + F +
Sbjct: 233 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292
Query: 114 -TLEELWVSYNYIEKTKGI-----GVMRKLKVLYMSNN 145
+ + + N + + I + + + N
Sbjct: 293 ASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 38.4 bits (90), Expect = 7e-04
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 19/82 (23%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKING--------LSGLKKLKVLSLARNNIK----- 103
+ K+ LA + + L N I I + +SL N ++
Sbjct: 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Query: 104 --SFAGLEPLAETLEELWVSYN 123
+F + + +
Sbjct: 312 PSTFRCV----YVRAAVQLGNY 329
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 52.8 bits (128), Expect = 3e-09
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELW 119
+++ L KL + ++ + L + L + A + L E +L
Sbjct: 21 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE-KSKLQ 79
Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDD 178
Y + + +G + + L + E +GE P L L +
Sbjct: 80 EIYQELTRLKAAVGELPEKSKLQEIYQELTELKA--AVGELPEKSKLQEIYQELTQ---- 133
Query: 179 PLYKSEVKKRLPNLKKLD 196
L K+ V + LP+ K
Sbjct: 134 -L-KAAVGE-LPDQSKQQ 148
Score = 51.3 bits (124), Expect = 1e-08
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELW 119
+++ L KL + ++ + L + L + A + L E +L
Sbjct: 44 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE-KSKLQ 102
Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
Y + + +G + + L + + +GE P L +
Sbjct: 103 EIYQELTELKAAVGELPEKSKLQEIYQELTQLKA--AVGELPDQSKQQQIYQELTD 156
Score = 49.4 bits (119), Expect = 5e-08
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 21/137 (15%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYNY 124
L KL + ++ + L + L + A + L E +L Y
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPE-KSKLQEIYQE 61
Query: 125 IEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKL----GECPSLIDLVFCGNPLVEGMDDP 179
+ + +G + + L E +L GE P L L E
Sbjct: 62 LTRLKAAVGELPEKSKLQEIYQ------ELTRLKAAVGELPEKSKLQEIYQELTE----- 110
Query: 180 LYKSEVKKRLPNLKKLD 196
K+ V + LP KL
Sbjct: 111 -LKAAVGE-LPEKSKLQ 125
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 54.7 bits (132), Expect = 3e-09
Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 18/132 (13%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----F 105
+++ M + N LS++ + + + L L+ L+L+ N I +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 106 AGLEPLAETLEELWVSYNYIEK-TKGIGV-MRKLKVLYMSNNLVKEWAE--FVKLGECPS 161
L L+E+ + + + L+VL +S N + E F + +
Sbjct: 269 HEL----LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV---GN 321
Query: 162 LIDLVFCGNPLV 173
L L+ NPL
Sbjct: 322 LETLILDSNPLA 333
Score = 54.7 bits (132), Expect = 3e-09
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 26/148 (17%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLA 112
+L+ L L L I I L +LKVL ++ GL
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL---- 224
Query: 113 ETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFC 168
L L +++ + + + L+ L +S N + +L L ++
Sbjct: 225 -NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL---LRLQEIQLV 280
Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
G L + L L+ L+
Sbjct: 281 GGQLAVVEPYAF------RGLNYLRVLN 302
Score = 54.3 bits (131), Expect = 4e-09
Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 36/165 (21%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
A + E+L L+ N++ + + L L+ L L N +K F GL L +
Sbjct: 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108
Query: 114 --------------------TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWA 151
L+ L V N + + + L+ L + +
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 152 EFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L LI L + D KRL LK L+
Sbjct: 169 TEA-LSHLHGLIVLRLRHLNINAIRDYSF------KRLYRLKVLE 206
Score = 49.7 bits (119), Expect = 2e-07
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 20/139 (14%)
Query: 67 LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L N + L + N + I+ SGL L+ L+L + N+ S + L L L
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL----HGLIVLR 182
Query: 120 VSYNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
+ + I + +LKVL +S+ + L +L L L
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPY 241
Query: 178 DPLYKSEVKKRLPNLKKLD 196
+ + L L+ L+
Sbjct: 242 LAV------RHLVYLRFLN 254
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 53.8 bits (130), Expect = 4e-09
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 27/169 (15%)
Query: 41 GIPISEAKEVGLQMQFIEK-MDSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSL 97
GIP + ++ + L I +S N L L +N++ +I +GL L+ L L
Sbjct: 29 GIP-AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 98 ARNN-IKS-----FAGLEPLAETLEELWVSYNYIEK-TKGI-GVMRKLKVLYMSNNLVKE 149
+ N ++S F GL L L + +++ G+ + L+ LY+ +N ++
Sbjct: 88 SDNAQLRSVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 150 WAE--FVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
+ F L +L L GN + + + L +L +L
Sbjct: 144 LPDDTFRDL---GNLTHLFLHGNRISSVPERAF------RGLHSLDRLL 183
Score = 50.0 bits (120), Expect = 1e-07
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
D + L N L L N I + GL L L L +N + F L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL----G 201
Query: 114 TLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNN 145
L L++ N + T+ + +R L+ L +++N
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 52.5 bits (126), Expect = 1e-08
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAE 113
+ + LTN L LS N + I+ + L+ L L+ N++ + F+ L +
Sbjct: 57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL----Q 112
Query: 114 TLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVK--EWAEFVKLGECPSLIDLVFC 168
LE L + N+I M +L+ LY+S N + + P L+ L
Sbjct: 113 ALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171
Query: 169 GNPL 172
N L
Sbjct: 172 SNKL 175
Score = 36.0 bits (83), Expect = 0.006
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-----NGLSGLKKLKVLSLARNNIKS--- 104
+ ++ ++ + +KL LS N I + + L KL +L L+ N +K
Sbjct: 123 HIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180
Query: 105 --FAGLEPL 111
L
Sbjct: 181 TDLQKLPAW 189
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 51.5 bits (124), Expect = 3e-08
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 67 LTNCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEEL 118
L ++L+++ N+I+ S L L+ L L+ N I+S L + L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182
Query: 119 WVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNP 171
+S N + G +LK L + N +K + F +L SL + NP
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL---TSLQKIWLHTNP 235
Score = 50.0 bits (120), Expect = 9e-08
Identities = 36/145 (24%), Positives = 55/145 (37%), Gaps = 21/145 (14%)
Query: 41 GIPISEAKEVGLQMQFIEKMDS-SLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSL 97
+P S K + L + + S S + L LS I+ I L L L L
Sbjct: 25 NLPFS-TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 98 ARNNIKS-----FAGLEPLAETLEELWVSYNYIEK--TKGIGVMRKLKVLYMSNNL---V 147
N I+S F+GL +L++L + IG ++ LK L +++NL
Sbjct: 84 TGNPIQSLALGAFSGL----SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 148 KEWAEFVKLGECPSLIDLVFCGNPL 172
K F L +L L N +
Sbjct: 140 KLPEYFSNL---TNLEHLDLSSNKI 161
Score = 39.2 bits (92), Expect = 4e-04
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEEL 118
L++ +KL + + + LK LK L++A N I+S F+ L LE L
Sbjct: 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHL 154
Query: 119 WVSYNYIEKTKGIGVMRKLK-------VLYMSNN 145
+S N I ++ +R L L +S N
Sbjct: 155 DLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLN 187
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 51.1 bits (122), Expect = 5e-08
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 12/113 (10%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
E ++ N + + L L+VLS+ N + L L E+LE L VS N +E
Sbjct: 139 PALLEYINADNNQLTMLPEL--PTSLEVLSVRNNQLTF---LPELPESLEALDVSTNLLE 193
Query: 127 K-TKGIGVMRKLK----VLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
+ N + E + ++ NPL
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPE--NILSLDPTCTIILEDNPLSS 244
Score = 35.3 bits (81), Expect = 0.011
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKINGL---SGLKKLKVLSLARNNIKSFAGLEPLAETLEE 117
+ EK +L + L + + L L R N+ S + L +
Sbjct: 27 ADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLP--DNLPPQITV 84
Query: 118 LWVSYNYIEK-TKGIGVMRKLKVLYMSNN 145
L ++ N + + L+ L +N
Sbjct: 85 LEITQNALISLPELPA---SLEYLDACDN 110
Score = 29.9 bits (67), Expect = 0.51
Identities = 15/141 (10%), Positives = 33/141 (23%), Gaps = 11/141 (7%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
N I I + L + L N + S +T + +
Sbjct: 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 126 EKTKGIGVMRKLKVLYM----------SNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
+ L +++ + W F + + + V
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325
Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
+ ++ +V L L
Sbjct: 326 RNTSGFREQVAAWLEKLSASA 346
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 49.9 bits (119), Expect = 1e-07
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 60 MDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
+ A + L LS N + +L L+L+ +K + L L
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV--PKGLPAKLS 277
Query: 117 ELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
L +SYN +++ + ++ L + N
Sbjct: 278 VLDLSYNRLDRNPSPDELPQVGNLSLKGN 306
Score = 49.5 bits (118), Expect = 1e-07
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 67 LTNCEKLSLSTNMIEKING-----LSGLKKLKVLSLARNNIKSFAGLEPLA--ETLEELW 119
+ L+L +E +G + +L+ L L+ N+++ AG L L
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259
Query: 120 VSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
+S+ +++ KG+ KL VL +S N + E P + +L GNP ++
Sbjct: 260 LSFTGLKQVPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLD 310
Score = 34.1 bits (78), Expect = 0.022
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 9/136 (6%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ S ++ G+SGL++L + +L LE L L +
Sbjct: 75 VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 127 ------KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
+ LKVL ++ + ++ P+L L NP + + L
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELG--ERGL 191
Query: 181 YKSEVKKRLPNLKKLD 196
+ + P L+ L
Sbjct: 192 ISALCPLKFPTLQVLA 207
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 49.7 bits (119), Expect = 1e-07
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
T+ E+L+L+ N I KI N GL L L+L++N + S F L + LE L
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL----DKLEVLD 353
Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPL 172
+SYN+I + G + LK L + N +K + F +L SL + NP
Sbjct: 354 LSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL---TSLQKIWLHTNPW 407
Score = 47.0 bits (112), Expect = 1e-06
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS-----FAGLEPLA 112
++S + L + + L + + N GL L +L L N F GL
Sbjct: 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL---- 102
Query: 113 ETLEELWVSYNYIEKTK-GIGV---MRKLKVLYMSNN---LVKEWAEFVKLGECPSLIDL 165
LE L ++ ++ + L++L + +N ++ + F+ + L
Sbjct: 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM---RRFHVL 159
Query: 166 VFCGNPL 172
N +
Sbjct: 160 DLTFNKV 166
Score = 44.0 bits (104), Expect = 1e-05
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
+ + LS + I + + S L+ L+LA+N I F GL L +L +
Sbjct: 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL----THLLKLNL 330
Query: 121 SYNYIEKTKGIGV---MRKLKVLYMSNN 145
S N++ + + + KL+VL +S N
Sbjct: 331 SQNFL-GSIDSRMFENLDKLEVLDLSYN 357
Score = 38.6 bits (90), Expect = 9e-04
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 25/147 (17%)
Query: 67 LTNCEKLSLSTNMIEKI----NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLE 116
L N E L+L+ ++ N L L++L L NNIK F +
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM----RRFH 157
Query: 117 ELWVSYNYI----EKTKGIGVMRKLKVLYMSNN-------LVKEWAEFVKLGECPSLIDL 165
L +++N + E+ + +L +S+ W + + S+ L
Sbjct: 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217
Query: 166 VFCGNPLVEGMDDPLYKSEVKKRLPNL 192
GN E M + + ++ +L
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSL 244
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 49.1 bits (117), Expect = 3e-07
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 6/124 (4%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKSFAGLE 109
Q++ + K+ + + ++L +S N + S K L L+++ N +
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FR 417
Query: 110 PLAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
L ++ L + N I+ K + + L+ L +++N +K + + SL +
Sbjct: 418 CLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQKIWLH 476
Query: 169 GNPL 172
NP
Sbjct: 477 TNPW 480
Score = 47.2 bits (112), Expect = 1e-06
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 67 LTNCEKLSLSTNMIEKINGLSG----LKKLKVLSLARNNIKSFAGLEPLA--ETLEELWV 120
LT E L L N +++++ ++ +K L+ L +++N++ + ++L L +
Sbjct: 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNN 145
S N + T + ++KVL + +N
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSN 431
Score = 46.8 bits (111), Expect = 2e-06
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEEL 118
++ L S N++ L +L+ L L N +K L +AE +L++L
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE---LSKIAEMTTQMKSLQQL 379
Query: 119 WVSYNYIEKTKGIGV---MRKLKVLYMSNN 145
+S N + + G + L L MS+N
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Score = 46.4 bits (110), Expect = 2e-06
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 18/135 (13%)
Query: 68 TNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
L++S N I ++ + L KL++L ++ N I+ F + LE L +
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN----QELEYLDL 76
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNL---VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
S+N + LK L +S N + EF + L L L +
Sbjct: 77 SHNKL-VKISCHPTVNLKHLDLSFNAFDALPICKEFGNM---SQLKFLGLSTTHLEKSSV 132
Query: 178 DPLYKSEVKKRLPNL 192
P+ + K L L
Sbjct: 133 LPIAHLNISKVLLVL 147
Score = 45.6 bits (108), Expect = 4e-06
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWVSY 122
L+ L +S N I+ + + ++L+ L L+ N + L+ L +S+
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT----VNLKHLDLSF 99
Query: 123 NYIEKTKGIGV---MRKLKVLYMSNN 145
N + M +LK L +S
Sbjct: 100 NAFDALPICKEFGNMSQLKFLGLSTT 125
Score = 40.2 bits (94), Expect = 2e-04
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 23/141 (16%)
Query: 67 LTNCEKLSLSTNMIEKINGL--SGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
+N + + + ++ L S + L + N + L LE L
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL----TELETLI 354
Query: 120 VSYNYIEK-TKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEG 175
+ N +++ +K + M+ L+ L +S N V + SL+ L N L +
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 176 MDDPLYKSEVKKRLPNLKKLD 196
+ L P +K LD
Sbjct: 415 IFRCL--------PPRIKVLD 427
Score = 38.3 bits (89), Expect = 0.001
Identities = 22/157 (14%), Positives = 46/157 (29%), Gaps = 20/157 (12%)
Query: 52 LQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLS-----GLKKLKVLSLARNNIKSFA 106
+++Q T+ + LS+ + + + + + + +
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316
Query: 107 GLEPLA-ETLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNN----LVKEWAEFVKLGEC 159
L P L S N + T + G + +L+ L + N L K ++
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM--- 373
Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
SL L N + +L L+
Sbjct: 374 KSLQQLDISQNSVSYDEKK-----GDCSWTKSLLSLN 405
Score = 34.5 bits (79), Expect = 0.016
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 67 LTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWVS 121
N + L LS N + + + +LK L L+ +++ + L + L +
Sbjct: 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148
Query: 122 YNYIEK 127
Y EK
Sbjct: 149 ETYGEK 154
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 48.8 bits (117), Expect = 3e-07
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAET- 114
++ E L+L+ N + + ++ L +L+ LS+ + A + E
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 115 ----LEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
L+ L + + I I ++ LK L + N+ + + P L +L G
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLRG 238
Query: 170 N 170
Sbjct: 239 C 239
Score = 43.0 bits (102), Expect = 2e-05
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELW 119
L N + L L I + ++ L+ LK L + + + + + L LEEL
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL-PKLEELD 235
Query: 120 VSY-NYIEK-TKGIGVMRKLKVLYMSNN 145
+ + G LK L + +
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDC 263
Score = 42.6 bits (101), Expect = 3e-05
Identities = 18/121 (14%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYN- 123
L++ + +++ + ++ + + L+ L+LARN +++ A + L L EL +
Sbjct: 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL-NRLRELSIRACP 161
Query: 124 ----------YIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV 173
+ + + L+ L + ++ + +L L +PL
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLS 219
Query: 174 E 174
Sbjct: 220 A 220
Score = 42.2 bits (100), Expect = 4e-05
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 12/119 (10%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYNY 124
L L + + + + L L+ +++ + ++ A LE L ++ N
Sbjct: 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG-LETLTLARNP 138
Query: 125 IEK-TKGIGVMRKLKVLYMS--NNLVK------EWAEFVKLGECPSLIDLVFCGNPLVE 174
+ I + +L+ L + L + + +L L +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS 197
Score = 35.3 bits (82), Expect = 0.009
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 62 SSLAVLTNCEKLSLS-TNMIEKI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAET 114
++ L E+L L + G LK L L + L
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT----Q 278
Query: 115 LEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKE 149
LE+L + I + ++ + +L +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 48.6 bits (116), Expect = 3e-07
Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 26/169 (15%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSL 97
G+ K + L I + +S L N + L L++N I I S L L+ L L
Sbjct: 49 GLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 98 ARNNIKS-----FAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAE 152
+ N + + F L +L L + N + + L L +
Sbjct: 108 SYNYLSNLSSSWFKPL----SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG--NMDT 161
Query: 153 FVKLGE-----CPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
F K+ L +L + L Y+ + K + N+ L
Sbjct: 162 FTKIQRKDFAGLTFLEELEIDASDLQS------YEPKSLKSIQNVSHLI 204
Score = 46.7 bits (111), Expect = 2e-06
Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 29/147 (19%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
LT E+L + + ++ L ++ + L L +E L
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS----VECLE 228
Query: 120 VSYNYIEK----------TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCG 169
+ ++ T + + + +++ + + + L + L++L F
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSR 286
Query: 170 NPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N L + + D ++ L +L+K+
Sbjct: 287 NQL-KSVPDGIFDR-----LTSLQKIW 307
Score = 34.3 bits (79), Expect = 0.016
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 18/94 (19%)
Query: 67 LTNCEKLSLSTNMIEKI----------NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
++ E L L ++ N L + + + ++ L L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280
Query: 117 ELWVSYNYIEKTKGIGV-----MRKLKVLYMSNN 145
EL S N + K + + L+ +++ N
Sbjct: 281 ELEFSRNQL---KSVPDGIFDRLTSLQKIWLHTN 311
Score = 27.4 bits (61), Expect = 3.0
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN 101
++ +L S N ++ + L L+ + L N
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 48.8 bits (117), Expect = 3e-07
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 26/126 (20%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNI-----KSFAGLEPLAE 113
+++ T + L++S+N + G LK L+ LSLA N +G
Sbjct: 241 RAISTCTELKLLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACD--- 294
Query: 114 TLEELWVSYNYIEKT--KGIGVMRKLKVLYMSNN-----LVKEWAEFVKLGECPSLIDLV 166
TL L +S N+ G L+ L +S+N L + L + L L
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-----LLKMRGLKVLD 349
Query: 167 FCGNPL 172
N
Sbjct: 350 LSFNEF 355
Score = 46.4 bits (111), Expect = 2e-06
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 62 SSLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNNIKSFAGLEPLAET------ 114
SSL LT E L LS + I ++G L L L+RN+ +G +
Sbjct: 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS---LSGPVTTLTSLGSCSG 127
Query: 115 LEELWVSYNYIEKT---KGIGVMRKLKVLYMS-NNLVKE-WAEFVKLGECPSLIDLVFCG 169
L+ L VS N ++ G + L+VL +S N++ +V C L L G
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 170 NPL 172
N +
Sbjct: 188 NKI 190
Score = 45.7 bits (109), Expect = 4e-06
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 62 SSLAVLTNCEKLSLSTNMIE---KINGLSGLKKLKVLSLARNNI-----KSFAGLEPLAE 113
+SL + + L++S+N ++ K++G L L+VL L+ N+I + + E
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 114 TLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFV----KLGECPSLIDLVFCG 169
L+ L +S N I + L+ L +S+N F LG+C +L L G
Sbjct: 180 -LKHLAISGNKISGDVDVSRCVNLEFLDVSSN------NFSTGIPFLGDCSALQHLDISG 232
Query: 170 NPL 172
N L
Sbjct: 233 NKL 235
Score = 43.7 bits (104), Expect = 1e-05
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 24/123 (19%)
Query: 62 SSLAVLTNCEKLSLSTNMIE-KI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAET 114
SSL L+ L L NM+E +I L +K L+ L L N++ +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT----N 491
Query: 115 LEELWVSYNYIEKT--KGIGVMRKLKVLYMSNNLVKEWAEF-----VKLGECPSLIDLVF 167
L + +S N + K IG + L +L +SNN F +LG+C SLI L
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNN------SFSGNIPAELGDCRSLIWLDL 545
Query: 168 CGN 170
N
Sbjct: 546 NTN 548
Score = 43.0 bits (102), Expect = 3e-05
Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 22/126 (17%)
Query: 62 SSLAVLTNCEKLSLSTNM----IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAE---T 114
S + L LS N + + L LK L+++ N + F G +
Sbjct: 94 SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL-DFPGKVSGGLKLNS 152
Query: 115 LEELWVSYNYIEKT-----KGIGVMRKLKVLYMSNNLVKEWAEF---VKLGECPSLIDLV 166
LE L +S N I +LK L +S N + V + C +L L
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN------KISGDVDVSRCVNLEFLD 206
Query: 167 FCGNPL 172
N
Sbjct: 207 VSSNNF 212
Score = 38.4 bits (90), Expect = 0.001
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 67 LTNCEKLSLSTNMIE-KI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAETLEELW 119
++L L N KI LS +L L L+ N + S L L +L
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL----SKLRDLK 448
Query: 120 VSYNYIEKT--KGIGVMRKLKVLYMSNN 145
+ N +E + + ++ L+ L + N
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFN 476
Score = 38.0 bits (89), Expect = 0.002
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 15/90 (16%)
Query: 67 LTNCEKLSLSTNMIE-KI-NGLSGLKKLKVLSLARNNI------KSFAGLEPLAETLEEL 118
L LS N + L+ L+L+ NN + + L+ L
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM----RGLKVL 348
Query: 119 WVSYNYIEKT--KGIGVMR-KLKVLYMSNN 145
+S+N + + + L L +S+N
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Score = 36.4 bits (85), Expect = 0.004
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 62 SSLAVLTNCEKLSLSTNMIE-KI-NGLSGLK-KLKVLSLARNN----IKSFAGLEPLAET 114
+L + + L LS N ++ L+ L L L L+ NN I P T
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-NT 395
Query: 115 LEELWVSYNYIEKT--KGIGVMRKLKVLYMSNN 145
L+EL++ N + +L L++S N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Score = 29.1 bits (66), Expect = 1.1
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 67 LTNC---EKLSLSTNMIE-KI-NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAETLE 116
+ + L+L N I I + + L+ L +L L+ N + ++ + L L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL----TMLT 707
Query: 117 ELWVSYN 123
E+ +S N
Sbjct: 708 EIDLSNN 714
Score = 28.3 bits (64), Expect = 1.7
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 14/140 (10%)
Query: 62 SSLAVLTNCEKLSLSTNMIE-KI-NGLSGLKKLKVLSLARNNIKSFAGLEP--LAETLEE 117
+ L N L LS N I L + L L L N F G P + + +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL---FNGTIPAAMFKQSGK 564
Query: 118 LWVSYNYIEKTKGIGVMRKLKVLYMSNNLVK-EWAEFVKLGECPSLIDLVFCGNPLVEGM 176
+ ++ ++ I K + + NL++ + +L + G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY-GGH 623
Query: 177 DDPLYKSEVKKRLPNLKKLD 196
P + + ++ LD
Sbjct: 624 TSPTFDN-----NGSMMFLD 638
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 47.8 bits (114), Expect = 5e-07
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 18/115 (15%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLAR 99
+P + L + + L T +L+L + K+ L L L L+
Sbjct: 28 DLPKD-TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSH 86
Query: 100 NNIKS----FAGLEPLAETLEELWVSYNYIEKTKGI--GV---MRKLKVLYMSNN 145
N ++S L L L VS+N + + G + +L+ LY+ N
Sbjct: 87 NQLQSLPLLGQTL----PALTVLDVSFNRLTS---LPLGALRGLGELQELYLKGN 134
Score = 43.2 bits (102), Expect = 2e-05
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L L +S N + + L GL +L+ L L N +K+ LE+L
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT----PKLEKLS 154
Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
++ N + + G+ + L L + N
Sbjct: 155 LANNNLTELPA-GLLNGLENLDTLLLQEN 182
Score = 39.7 bits (93), Expect = 3e-04
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 67 LTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L ++L L N ++ + GL + KL+ LSLA NN+ GL E L+ L
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL----ENLDTLL 178
Query: 120 VSYNYIEKT-KGIGVMRKLKVLYMSNN 145
+ N + KG L ++ N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGN 205
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 47.3 bits (113), Expect = 6e-07
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
Query: 66 VLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN-IKS-----FAGLEPLAETLEE 117
+ + + L L + I + S L + + ++ + ++ F L +
Sbjct: 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS----KVTH 84
Query: 118 LWVSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+ + + LK L + N +K + + K+ L NP
Sbjct: 85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142
Score = 39.2 bits (92), Expect = 4e-04
Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 71 EKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI------KSFAGLEPLAETLEELWVSY 122
L L N + +G K L + L +N +F G+ L VS
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVY---SGPSLLDVSQ 214
Query: 123 NYIEKTKGIGVMRKLKVLYMSNN 145
+ + LK L N
Sbjct: 215 TSVTALPS-KGLEHLKELIARNT 236
Score = 38.4 bits (90), Expect = 7e-04
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 67 LTNCEKLSLS-TNMIEKING--LSGLKKLKVLSLARNNIKSFAGLE--PLAETLEELWVS 121
L+ + + T + I+ L L LK L + +K F L + L ++
Sbjct: 79 LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138
Query: 122 YN----YIEKTKGIGVMRKLKVLYMSNN 145
N I G+ + L + NN
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Score = 32.3 bits (74), Expect = 0.073
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 18/98 (18%)
Query: 61 DSSLAVLTNCEKLSLSTNM-IEKI--NGLSGLKK-LKVLSLARNNIKS-----FAGLEPL 111
+ + L ++ N + I N GL L L N S F G
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT--- 179
Query: 112 AETLEELWVSYN-YIEK-TKGI--GVMRKLKVLYMSNN 145
L+ ++++ N Y+ K GV +L +S
Sbjct: 180 --KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 47.6 bits (113), Expect = 8e-07
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 18/145 (12%)
Query: 68 TNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
+ LSLS N I ++ +S L +L+VL L+ N I+S F + LE L V
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN----QDLEYLDV 107
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNL---VKEWAEFVKLGECPSLIDLVFCGNPLVEGMD 177
S+N + + M L+ L +S N + EF L L L +
Sbjct: 108 SHNRL-QNISCCPMASLRHLDLSFNDFDVLPVCKEFGNL---TKLTFLGLSAAKFRQLDL 163
Query: 178 DPLYKSEVKKRLPNLKKLDGEVLPE 202
P+ + L +L +
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGET 188
Score = 39.1 bits (91), Expect = 5e-04
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 30/109 (27%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-------------------- 104
++ L+ + N+ G S LK+L+ L L RN +K+
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 105 --------FAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNN 145
+ AE++ L +S N + + + K+KVL + NN
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Score = 35.6 bits (82), Expect = 0.008
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 71 EKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSF--AGLEPLAETLEELWVSYN 123
+ L L N I I ++ L+ L+ L++A N +KS + L +L+ +W+ N
Sbjct: 453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRL-TSLQYIWLHDN 507
Score = 35.2 bits (81), Expect = 0.011
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLEELWV 120
+ E L +S N ++ I+ + L+ L L+ N+ F L L L +
Sbjct: 99 NQDLEYLDVSHNRLQNIS-CCPMASLRHLDLSFNDFDVLPVCKEFGNL----TKLTFLGL 153
Query: 121 SYNYIEK 127
S +
Sbjct: 154 SAAKFRQ 160
Score = 30.2 bits (68), Expect = 0.50
Identities = 15/106 (14%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 66 VLTNCEKLSLSTNMIEKI---NGLSGLKKLKVLSLARNNIKS--FAGLEPLAETLEELWV 120
+ + L LS N + + L KL L L+ + + L + L +
Sbjct: 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL 178
Query: 121 SYNYIEKTKGIGVMRKLKV----LYMSNNLVKEWAEFVKLGECPSL 162
+I+ + ++ L N + + + L
Sbjct: 179 VSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 46.8 bits (111), Expect = 2e-06
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ ++L +S N + + L +LK L ++ N + S L L L L V N +
Sbjct: 220 PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTS---LPMLPSGLLSLSVYRNQLT 274
Query: 127 K-TKGIGVMRKLKVLYMSNN 145
+ + + + + + N
Sbjct: 275 RLPESLIHLSSETTVNLEGN 294
Score = 45.7 bits (108), Expect = 4e-06
Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 11/109 (10%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ KL N + + L LK L ++ N + S L L L+EL VS N +
Sbjct: 200 PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS---LPVLPSELKELMVSGNRLT 254
Query: 127 KT-KGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVE 174
L L + N + E L S + GNPL E
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLTRLPE--SLIHLSSETTVNLEGNPLSE 298
Score = 45.7 bits (108), Expect = 4e-06
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 24/131 (18%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
L +S N + + GL +L + S + L L L +LW+ N +
Sbjct: 80 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------LPALPSGLCKLWIFGNQL 133
Query: 126 EKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEV 185
T + L+ L +S+N + L L N L + +
Sbjct: 134 --TSLPVLPPGLQELSVSDNQLASLPA-----LPSELCKLWAYNNQL----------TSL 176
Query: 186 KKRLPNLKKLD 196
L++L
Sbjct: 177 PMLPSGLQELS 187
Score = 44.1 bits (104), Expect = 1e-05
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI 125
+ ++LS+S N + + S L KL + N + S L L L+EL VS N +
Sbjct: 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYN---NRLTS---LPALPSGLKELIVSGNRL 233
Query: 126 EK-TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPL 172
+LK L +S N + L+ L N L
Sbjct: 234 TSLPVLPS---ELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQL 273
Score = 39.5 bits (92), Expect = 4e-04
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 24/132 (18%)
Query: 66 VLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF-AGLEPLAETLEELWVSYNY 124
+ + L + N + + + +L+ L ++ N + S L E L +
Sbjct: 59 LPAHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLPVLPPGLLE-LSIFSNPLTH 115
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSE 184
+ + L L++ N + P L +L N L +
Sbjct: 116 LPA-----LPSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQL----------AS 155
Query: 185 VKKRLPNLKKLD 196
+ L KL
Sbjct: 156 LPALPSELCKLW 167
Score = 35.3 bits (81), Expect = 0.011
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 67 LTNCEKLSLSTNMIEKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
+ LS+ N + ++ L L ++L N + T
Sbjct: 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312
Score = 31.4 bits (71), Expect = 0.20
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 37/127 (29%)
Query: 89 LKKLKVLSLARNNIKS-----FAGLEPLA-------------ETLEELWVSYNYIEK-TK 129
VL++ + + + A + L L L VS N +
Sbjct: 39 NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV 98
Query: 130 GIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL 189
+ +L + + L L GN L + +
Sbjct: 99 LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQL----------TSLPVLP 140
Query: 190 PNLKKLD 196
P L++L
Sbjct: 141 PGLQELS 147
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 44.3 bits (105), Expect = 5e-06
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
++ L N I+ I S KKL+ + L+ N I F GL +L L +
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL----RSLNSLVL 87
Query: 121 SYNYIEKTKGIGV---MRKLKVLYMSNN 145
N I + + L++L ++ N
Sbjct: 88 YGNKI-TELPKSLFEGLFSLQLLLLNAN 114
Score = 41.6 bits (98), Expect = 5e-05
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
++ LS N I ++ + GL+ L L L N I F GL +L+ L
Sbjct: 55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL----FSLQLLL 110
Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPL 172
++ N I + + + L +L + +N ++ A+ F L ++ + NP
Sbjct: 111 LNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL---RAIQTMHLAQNPF 164
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 44.7 bits (106), Expect = 7e-06
Identities = 23/181 (12%), Positives = 54/181 (29%), Gaps = 27/181 (14%)
Query: 40 NGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLK 93
NG+ ++ + ++ + N +E + L
Sbjct: 132 NGLGPQAGAKIA-RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190
Query: 94 VLSLARNNIKSFAGLEPLAE------TLEELWVSYNYIEKT------KGIGVMRKLKVLY 141
+ + +N I+ L E L+ L + N + L+ L
Sbjct: 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250
Query: 142 MSNNL-----VKEWAEFVKLGECPSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKL 195
+++ L + E L L N + ++ + L + +++P+L L
Sbjct: 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT-LKTV-IDEKMPDLLFL 308
Query: 196 D 196
+
Sbjct: 309 E 309
Score = 43.2 bits (102), Expect = 2e-05
Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 44/174 (25%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKIN------------GLSGLKKLKVLSLARNNIKSFAGLE 109
++A + E S ++ L KL + L+ N E
Sbjct: 54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-TAQE 112
Query: 110 PLAE------TLEELWVSYNYI---------------EKTKGIGVMRKLKVLYMSNNL-- 146
PL + LE L++ N + K L+ + N
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172
Query: 147 ---VKEWAEFVKLGECPSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
+KEWA+ L + N + EG++ L E LK LD
Sbjct: 173 NGSMKEWAKT--FQSHRLLHTVKMVQNGIRPEGIEHLL--LEGLAYCQELKVLD 222
Score = 38.9 bits (91), Expect = 5e-04
Identities = 27/171 (15%), Positives = 52/171 (30%), Gaps = 39/171 (22%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNI-----KSFAGLEP 110
+ L + +++ LS N I ++ K L++ + + L
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85
Query: 111 LAE------TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNN------------L 146
L + L + +S N T + L+ LY+ NN
Sbjct: 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145
Query: 147 VKEWAEFVKLGECPSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
++E A K P L ++ N L M ++ + L +
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSM---KEWAKTFQSHRLLHTVK 193
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 43.7 bits (103), Expect = 1e-05
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 65 AVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS------FAGLEPLAETLE 116
+ N +L + I SG L+ + +++N++ F+ L L
Sbjct: 27 DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL----PKLH 82
Query: 117 ELWVS-YNYIEK--TKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
E+ + N + + + L+ L +SN +K + K+ + L N
Sbjct: 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH-SLQKVLLDIQDNI 139
Score = 41.0 bits (96), Expect = 1e-04
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 67 LTNCEKLSLS-TNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAET-LEELWVSY 122
L ++ + N + I L L+ L ++ IK + + L +
Sbjct: 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137
Query: 123 N----YIEKTKGIGVMRKLKVLYMSNN 145
N IE+ +G+ + +L+++ N
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKN 164
Score = 34.4 bits (79), Expect = 0.015
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 67 LTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKSF--AGLEPLAETLEELWVSY 122
E N +E++ G +L ++R I S GLE L + L S
Sbjct: 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK-LRAR--ST 233
Query: 123 NYIEKTKGIGVMRKLKVLYMSNN 145
++K + + L ++
Sbjct: 234 YNLKKLPTLEKLVALMEASLTYP 256
Score = 31.0 bits (70), Expect = 0.20
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 17/91 (18%)
Query: 67 LTNCEKLSLSTNM-IEKI--NGLSGL-KKLKVLSLARNNIKS-----FAGLEPLAETLEE 117
L + N+ I I N GL + +L L +N I+ F G + E
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT----QLDEL 182
Query: 118 LWVSYNYIEKTKGIGVMRKL---KVLYMSNN 145
N +E+ V +L +S
Sbjct: 183 NLSDNNNLEELPN-DVFHGASGPVILDISRT 212
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 42.9 bits (102), Expect = 3e-05
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 62 SSLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNNI-----KSFAGLEPLAETL 115
N +K+ L+ N + + + K L L L N I + L + L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL----KFL 270
Query: 116 EELWVSYNYIEKTKG----IGVMRKLKVLYMSNN 145
L VS+N + G G +++ V +NN
Sbjct: 271 HSLNVSFNNLC---GEIPQGGNLQRFDVSAYANN 301
Score = 37.5 bits (88), Expect = 0.002
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 20/97 (20%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKING-----LSGLKKLKVLSLARNNI-----KSFAGLEPL 111
++A LT L ++ ++G LS +K L L + N + S + L
Sbjct: 95 PAIAKLTQLHYLYITHT---NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL--- 148
Query: 112 AETLEELWVSYNYIEKT--KGIGVMRKL-KVLYMSNN 145
L + N I G KL + +S N
Sbjct: 149 -PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 42.7 bits (101), Expect = 3e-05
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
LT L L+ N ++ + LK L+ L + N +++ F L L EL
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL----VNLAELR 115
Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
+ N ++ V + KL L + N
Sbjct: 116 LDRNQLKSLPP-RVFDSLTKLTYLSLGYN 143
Score = 40.3 bits (95), Expect = 1e-04
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWV 120
+ +KL L +N + + L KL++L L N +++ F L + LE LWV
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----KNLETLWV 92
Query: 121 SYNYIEKTKGIGV---MRKLKVLYMSNN 145
+ N + + IGV + L L + N
Sbjct: 93 TDNKL-QALPIGVFDQLVNLAELRLDRN 119
Score = 39.2 bits (92), Expect = 4e-04
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
L N E L ++ N ++ + L L L L RN +KS F L L L
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL----TKLTYLS 139
Query: 120 VSYNYIEKTKGIGVMRK---LKVLYMSNN 145
+ YN + ++ GV K LK L + NN
Sbjct: 140 LGYNEL-QSLPKGVFDKLTSLKELRLYNN 167
Score = 35.7 bits (83), Expect = 0.006
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 67 LTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
LT+ ++L L N ++++ L +LK L L N +K F L E L+ L
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL----EKLKMLQ 211
Query: 120 VSYN 123
+ N
Sbjct: 212 LQEN 215
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 41.9 bits (99), Expect = 4e-05
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 68 TNCEKLSLSTNMIEKIN---GLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
+L L+ N + L +L+ ++ + N I F G + E+
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA----SGVNEIL 87
Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
++ N +E + + + LK L + +N
Sbjct: 88 LTSNRLENVQH-KMFKGLESLKTLMLRSN 115
Score = 41.6 bits (98), Expect = 5e-05
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSS--LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLS 96
IP E+ L ++++ L K++ S N I I G + +
Sbjct: 29 HIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87
Query: 97 LARNNIKS-----FAGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNN 145
L N +++ F GL E+L+ L + N I + +++L + +N
Sbjct: 88 LTSNRLENVQHKMFKGL----ESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDN 139
Score = 38.5 bits (90), Expect = 5e-04
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 17/103 (16%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKING--LSGLKKLKVLSLARNNIKS-----F 105
++ IE + + + ++ L++N +E + GL+ LK L L N I F
Sbjct: 68 KITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125
Query: 106 AGLEPLAETLEELWVSYNYIEKTKGIGV---MRKLKVLYMSNN 145
GL ++ L + N I T G + L L + N
Sbjct: 126 IGL----SSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLAN 163
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 39.9 bits (94), Expect = 2e-04
Identities = 33/158 (20%), Positives = 47/158 (29%), Gaps = 30/158 (18%)
Query: 64 LAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE---- 113
L + L + I L + LK LSLA N + G L E
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGARLLCETLLE 310
Query: 114 ---TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGEC 159
LE LWV + R L L +SNN V+E + +
Sbjct: 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370
Query: 160 PSLIDLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
L L + L + +L++LD
Sbjct: 371 -VLRVLWLADCDVSDSSCSS-L--AATLLANHSLRELD 404
Score = 39.6 bits (93), Expect = 4e-04
Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 28/157 (17%)
Query: 64 LAVLTNCEKLSLSTNMI-----EKI-NGLSGLKKLKVLSLARNNIKSFAGLEPLAE---- 113
L +L C+ + L + + I + L L L+L N + G+ + +
Sbjct: 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQT 82
Query: 114 ---TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGEC 159
+++L + + + + L+ L++S+NL ++ E + +C
Sbjct: 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142
Query: 160 PSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L L L +PL + V + P+ K+L
Sbjct: 143 -RLEKLQLEYCSLSAASCEPL--ASVLRAKPDFKELT 176
Score = 39.2 bits (92), Expect = 6e-04
Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 28/149 (18%)
Query: 71 EKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE-------TLEE 117
E L + + + L+ + L L ++ N ++ AG+ L + L
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRV 374
Query: 118 LWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGECPSLIDLV 166
LW++ + + + L+ L +SNN + + E V+ C L LV
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC-LLEQLV 433
Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKL 195
E M+D L ++K P+L+ +
Sbjct: 434 LYDIYWSEEMEDRL--QALEKDKPSLRVI 460
Score = 33.8 bits (78), Expect = 0.032
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 30/151 (19%)
Query: 71 EKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE-------TLEE 117
EKL L + + L K L+++ N+I AG+ L + LE
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPCQLEA 203
Query: 118 LWVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGECPSLIDLV 166
L + + + L+ L + +N + E + L L
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLW 262
Query: 167 FCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
+ +G D L V + +LK+L
Sbjct: 263 IWECGITAKGCGD-L--CRVLRAKESLKELS 290
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 39.7 bits (92), Expect = 3e-04
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 61 DSSLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
L L L++ + + + + +L L+L+ N ++S + +L+EL
Sbjct: 49 LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108
Query: 119 WVSYN 123
+S N
Sbjct: 109 VLSGN 113
Score = 39.3 bits (91), Expect = 4e-04
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 75 LSTNMIEKINGLSGLKKLKVLSLARNNI------KSFAGLEPLAETLEELWVSYN---YI 125
++ ++ L G + L L + + GL L L + + ++
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL----GELRNLTIVKSGLRFV 71
Query: 126 EKTKGIGVMRKLKVLYMSNNLVK--EWAEFVKLGECPSLIDLVFCGNPLV 173
+L L +S N ++ W L SL +LV GNPL
Sbjct: 72 APDAFHF-TPRLSRLNLSFNALESLSWKTVQGL----SLQELVLSGNPLH 116
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 38.2 bits (89), Expect = 9e-04
Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 27/152 (17%)
Query: 71 EKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEEL 118
L LS N + GL+G + LSL + GLE LA L+EL
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD-EGLELLAAQLDRNRQLQEL 216
Query: 119 WVSYNYIEKT------KGIGVMRKLKVLYMSNNL-----VKEWAEFVKLGECPSLID-LV 166
V+YN T + L++L++ N + + E + + +
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSL 276
Query: 167 FCGNPLVEGMDDPLYKSEVKKRLPNLKKLDGE 198
G + E L SEV++ L + + +
Sbjct: 277 TEGTAVSEYWSVIL--SEVQRNLNSWDRARVQ 306
Score = 37.8 bits (88), Expect = 0.001
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 64 LAVLTNCEKLSLSTNMIEK--INGLS-GLK----KLKVLSLARNNIKSFAGLEPLAE--- 113
L V KL L N + L L ++ L L+ N + + AG+ L E
Sbjct: 122 LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA-AGVAVLMEGLA 180
Query: 114 ---TLEELWVSYNYIEKT------KGIGVMRKLKVLYMSNN 145
++ L + + + + R+L+ L ++ N
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 36.5 bits (85), Expect = 0.002
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 68 TNCEKLSLSTNMIEKING-LSGLKKLKVLSLARNNIKSFAGLEP-----LAETLEELWVS 121
+ +L L N + LS K L ++ L+ N I + L + + L L +S
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST---LSNQSFSNMTQ-LLTLILS 86
Query: 122 YNYIEKTKGI--GV---MRKLKVLYMSNNLVKEWAE--FVKLGECPSLIDLVFCGNPL 172
YN + + I ++ L++L + N + E F L +L L NPL
Sbjct: 87 YN---RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS---ALSHLAIGANPL 138
Score = 35.7 bits (83), Expect = 0.004
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLA 98
GIP + E+ L + L+ + + LS N I + N S + +L L L+
Sbjct: 28 GIP-RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 99 RNNIKS-----FAGLEPLAETLEELWVSYN 123
N ++ F GL ++L L + N
Sbjct: 87 YNRLRCIPPRTFDGL----KSLRLLSLHGN 112
Score = 31.1 bits (71), Expect = 0.15
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 67 LTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLARNNIKS 104
+T L LS N + I GLK L++LSL N+I
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV 116
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 36.5 bits (85), Expect = 0.003
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELWVS 121
L N L+L N + I+ L L L L L N ++S F L L+EL +
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL----TNLKELVLV 117
Query: 122 YNYIEKTKGIGV---MRKLKVLYMSNN 145
N ++ GV + L L +++N
Sbjct: 118 ENQLQSLPD-GVFDKLTNLTYLNLAHN 143
Score = 30.8 bits (70), Expect = 0.27
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 19/91 (20%)
Query: 67 LTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLARNNIKSFAGLEP-----LAETLEELW 119
LTN ++L L N ++ + +G+ L L L+LA N ++S L L L EL
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS---LPKGVFDKLTN-LTELD 163
Query: 120 VSYNYIEKTKGI--GV---MRKLKVLYMSNN 145
+SYN + + + GV + +LK L + N
Sbjct: 164 LSYN---QLQSLPEGVFDKLTQLKDLRLYQN 191
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 36.6 bits (85), Expect = 0.003
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSS-LAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSL 97
GIP ++ +++ LQ + + + LT L+L N ++ + L +L L L
Sbjct: 32 GIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90
Query: 98 ARNNIKSF-AGLEPLAETLEELWVSYNYIEKTKGIGVMRK---LKVLYMSNN 145
A N + S G+ L++L++ N ++ GV + LK L ++ N
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTN 141
Score = 31.2 bits (71), Expect = 0.18
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 67 LTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLARNNIKS-----FAGLEPLAETLEELW 119
LT +KL L N ++ + +G+ L KLK L L N ++S F L L+ L
Sbjct: 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL----TNLQTLS 161
Query: 120 VSYNYIEKTKGIGV---MRKLKVLYMSNN 145
+S N + ++ G + KL+ + + N
Sbjct: 162 LSTNQL-QSVPHGAFDRLGKLQTITLFGN 189
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.004
Identities = 42/201 (20%), Positives = 61/201 (30%), Gaps = 45/201 (22%)
Query: 28 NLKDALKKWEEENGIPI---------SEAKEVGLQMQFIEKMDSSLAVLT--NCEKLSLS 76
L+ AL + + I A +V L + KMD + L NC
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---P 195
Query: 77 TNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRK 136
++E + L S + ++ + + L L S Y
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENC 246
Query: 137 LKVLYMSNNL--VKEWAEFVKLGECPSLI--------DLVFCGN---PLVEGMDDPLYKS 183
L VL N+ K W F L C L+ D + ++ L
Sbjct: 247 LLVL---LNVQNAKAWNAF-NLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 184 EVKKRLPNLKKLDGEV--LPE 202
EVK L LK LD LP
Sbjct: 302 EVKSLL--LKYLDCRPQDLPR 320
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 36.5 bits (83), Expect = 0.004
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEELWV 120
+ + E ++E L +L+ + ++ + + G L + L+ + +
Sbjct: 259 IVDAE---EQNVVVEMFLESDILPQLETMDISAGVL-TDEGARLLLDHVDKIKHLKFINM 314
Query: 121 SYNYI 125
YNY+
Sbjct: 315 KYNYL 319
Score = 31.5 bits (70), Expect = 0.17
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 66 VLTNCEKLSLSTNMI------EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
+L E + +S ++ ++ + +K LK +++ N + S + L ++L
Sbjct: 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL-SDEMKKELQKSLP 332
Score = 29.5 bits (65), Expect = 0.64
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 17/123 (13%)
Query: 86 LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYI--EKTKGIGV-----MRKLK 138
L + L L + N S L+ L + + + I + KL
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV 225
Query: 139 VLYMSNNL-----VKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLK 193
+ + + + P+L L + + +S++ LP L+
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI---LPQLE 282
Query: 194 KLD 196
+D
Sbjct: 283 TMD 285
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 35.5 bits (82), Expect = 0.009
Identities = 23/154 (14%), Positives = 44/154 (28%), Gaps = 34/154 (22%)
Query: 71 EKLSLSTNMIEKINGLSGL--------KKLKVLSLARNNIKSFAGLEPLAE-------TL 115
L L N S + L+L N++ + L + +
Sbjct: 112 TVLDLGWNDFSS-KSSSEFKQAFSNLPASITSLNLRGNDLGI-KSSDELIQILAAIPANV 169
Query: 116 EELWVSYNYIEKT--KGIGVM-----RKLKVLYMSNNL-----VKEWAEFVKLGECPSLI 163
L + N + + + L +S NL E A ++
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN-HVV 228
Query: 164 DLVFCGNPL-VEGMDDPLYKSEVKKRLPNLKKLD 196
L C N L +++ +K L +L+ +
Sbjct: 229 SLNLCLNCLHGPSLEN---LKLLKDSLKHLQTVY 259
Score = 33.1 bits (76), Expect = 0.051
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 24/97 (24%)
Query: 71 EKLSLSTNMIEKINGLSGL--------KKLKVLSLARNNIKSFAGLEPLAE-------TL 115
L+LS N + L + L+L+ N + + L + T+
Sbjct: 54 TSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTI 111
Query: 116 EELWVSYNYIEKT--KGIGVM-----RKLKVLYMSNN 145
L + +N + L + N
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN 148
Score = 28.5 bits (64), Expect = 1.5
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 21/91 (23%)
Query: 75 LSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE-------TLEELWVS 121
++ + S + L L+ NN+ S L + ++ L +S
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLS 59
Query: 122 YNYIEKT--KGIGVM-----RKLKVLYMSNN 145
N + + + + L +S N
Sbjct: 60 GNSLGFKNSDELVQILAAIPANVTSLNLSGN 90
Score = 28.5 bits (64), Expect = 1.6
Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI---------NGLSGLKKLKVLSLARNNIKSFAG 107
+E + L + + + L ++++ + ++K+ ++ I +
Sbjct: 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP-SH 300
Query: 108 LEPLAETLEEL 118
P++ + EL
Sbjct: 301 SIPISNLIREL 311
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 34.6 bits (80), Expect = 0.011
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 22/119 (18%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSS--LAVLTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLS 96
IP+ E+ L + ++ S L + KL L N + I G ++ L
Sbjct: 26 DIPLH-TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 97 LARNNIKS-----FAGLEPLAETLEELWVSYNYIEKTKGI--GV---MRKLKVLYMSNN 145
L N IK F GL L+ L + N I + G + L L +++N
Sbjct: 85 LGENKIKEISNKMFLGL----HQLKTLNLYDNQI---SCVMPGSFEHLNSLTSLNLASN 136
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 33.8 bits (78), Expect = 0.016
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 84 NGLSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEELWVSYNYIEKT------KGI 131
L +K S+ LAE TL+ L V N+I + + +
Sbjct: 59 EALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117
Query: 132 GVMRKLKVLYMSNN 145
L L + N
Sbjct: 118 QSNTSLIELRIDNQ 131
Score = 26.9 bits (60), Expect = 3.5
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 90 KKLKVLSLARNNIKSFAGLEPLAE------TLEELWVSYNYI--EKTKGIGVM----RKL 137
L+ ++L L+ AE +++ + + M L
Sbjct: 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTL 95
Query: 138 KVLYMSNN 145
K L + +N
Sbjct: 96 KSLNVESN 103
Score = 26.5 bits (59), Expect = 4.5
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 13/76 (17%)
Query: 64 LAVLTNCEKLSLSTNMIEK------INGLSGLKKLKVLSLARNNIK-SFAGLEPLAE--- 113
L V + L++ +N I + L L L + + +A
Sbjct: 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148
Query: 114 ---TLEELWVSYNYIE 126
TL + +
Sbjct: 149 KNTTLLKFGYHFTQQG 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 31.3 bits (71), Expect = 0.12
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 71 EKLSLSTNMIEKING--LSGLKKLKVLSLARNN------IKSFAGLEPLAETLEELWVSY 122
+ + + + I I + GL+ ++ + L + + ++ + LE L +++ E+ +
Sbjct: 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS 123
Query: 123 NYIEKTKGIGV---MRKLKVLYMSN 144
KGI R LK L++S+
Sbjct: 124 CGNVTDKGIIALHHFRNLKYLFLSD 148
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 30.0 bits (68), Expect = 0.35
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSSL-AVLTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSL 97
GIP + A+ + L I K++ + L N ++L L +N + + G+ L +L VL L
Sbjct: 37 GIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95
Query: 98 ARNNIKSFAGLEP-----LAETLEELWVSYNYIEKT-KGIGVMRKLKVLYMSNNLVKEWA 151
N + L L L+EL++ N + + +GI + L L + N +K
Sbjct: 96 GTNQLTV---LPSAVFDRLVH-LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
Query: 152 E--FVKLGECPSLIDLVFCGNP 171
F +L SL GNP
Sbjct: 152 HGAFDRLS---SLTHAYLFGNP 170
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 30.0 bits (68), Expect = 0.38
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 41 GIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGL-SGLKKLKVLSLA 98
GIP + LT+ +L L N ++ + NG+ + L L L+L+
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 99 RNNIKSFAGLEP-----LAETLEELWVSYNYIEKTKGI--GV---MRKLKVLYMSNN 145
N ++S L L + L+EL ++ N + + + GV + +LK L + N
Sbjct: 85 TNQLQS---LPNGVFDKLTQ-LKELALNTN---QLQSLPDGVFDKLTQLKDLRLYQN 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.54
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 15/37 (40%)
Query: 53 QMQFIEKMDSSLAVLTNCEKL-------SLSTN-MIE 81
+ Q ++K+ +SL KL +L+ +E
Sbjct: 18 EKQALKKLQASL-------KLYADDSAPALAIKATME 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 29.9 bits (67), Expect = 0.66
Identities = 36/189 (19%), Positives = 71/189 (37%), Gaps = 27/189 (14%)
Query: 19 EKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTN 78
L KP+ D N +P V ++ + + L + +++ ++ +
Sbjct: 69 RSVELKGKPHFADF-------NLVPDGWGGYVYPWIEAMSSSYTWLEEI-RLKRMVVTDD 120
Query: 79 MIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAET---LEELWVSYNYIEKTKGIGV-- 133
+E I K KVL L+ S GL +A T L+EL + + ++ G +
Sbjct: 121 CLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178
Query: 134 ----MRKLKVLYMSNNLVKEWAEFVK--LGECPSLIDLVFCGNPLVEGMDDPLYKSEVKK 187
L L +S + ++ + CP+L L +E + + + +
Sbjct: 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL------ATLLQ 232
Query: 188 RLPNLKKLD 196
R P L++L
Sbjct: 233 RAPQLEELG 241
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2,
protein structure initiative; 2.00A {Bacillus cereus
atcc 14579}
Length = 414
Score = 29.2 bits (65), Expect = 0.91
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 10 GNEACRQAAEKCAL------LAKPNLKDALKKWEE 38
G +A R A + + NL AL+ W
Sbjct: 373 GGKAFRTAIDATLQNKPLHEVDDINLHSALQIWGN 407
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 28.3 bits (63), Expect = 1.4
Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 20/122 (16%)
Query: 37 EEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKI-NGLSGLKKLKVL 95
E +N + + + + D+ L + +S I + K ++
Sbjct: 22 EPDNDTDVESC------INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKF 75
Query: 96 SLARNNIKSFAGLEPLAE------TLEELWVSYNYIEKTKGIGVMRKLKV------LYMS 143
SLA I + L E +L L V N++ ++R V
Sbjct: 76 SLANTAISD-SEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKAD 134
Query: 144 NN 145
N
Sbjct: 135 NQ 136
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 3.7
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 31 DALKKWEEENGIPISE--AKEVGLQMQFIEKMDSSLA 65
++++KW EE + E A ++ ++ EK L
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE 121
Score = 26.7 bits (58), Expect = 4.8
Identities = 7/58 (12%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 7 MKKGNEACRQAAEKCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSL 64
+++ + A + ++ AK +L++ ++ E+ + F ++ D+ +
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA--DKAFYQQPDADI 153
>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu
initiative, PSI, midwest center for structural genomics;
1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24
Length = 332
Score = 27.0 bits (59), Expect = 4.1
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 86 LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELW----VSYNYIEKTKGIGVMRKLKVLY 141
+G+K V +A + K E TL+E W +S +Y + + M ++
Sbjct: 86 AAGVKNRDVERIAELSAKFVPDAEKAMATLQERWTPVVISTSYTQYLRRTASMIGVRGEL 145
Query: 142 MSNNLVKEWAEFVK--LGECPSLIDLVFC--GNPLVEGMDDPLYKSEVKKRLPNLKKLDG 197
+ + + E S+ID++ G L +D+ +SEV+K + ++K +
Sbjct: 146 HGTEVDFDSIAVPEGLREELLSIIDVIASLSGEELFRKLDELFSRSEVRKIVESVKAVGA 205
Query: 198 E 198
Sbjct: 206 G 206
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics,
montreal-kings bacterial structural genomics initiative,
BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A
2kqk_A 1q48_A 1r9p_A 1wfz_A
Length = 129
Score = 25.5 bits (56), Expect = 7.4
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 20 KCALLAKPNLKDALKKWEEEN 40
C++LA+ +K A+ ++ +
Sbjct: 106 HCSILAEDAIKAAIADYKSKR 126
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein
complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus}
PDB: 4eb7_C*
Length = 153
Score = 25.5 bits (56), Expect = 8.7
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 20 KCALLAKPNLKDALKKWEEENGIPISEAKEVGLQMQFIEKMDSSLAVLTNCEK 72
C+ LA L+ A+ + +NG I + KE+GL+ + + + +
Sbjct: 101 HCSNLAADALRRAIVDYFRKNGK-IDKIKELGLEKELEKMEKGEMDDHGEYCE 152
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 26.0 bits (57), Expect = 9.3
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 61 DSSLAVLTNC---EKLSLS--TNMIEK-INGLSGLKKLKVLSLARNNIKSFAGLEPLAET 114
+ + LSLS ++I + + L + LK L + I L+ L E
Sbjct: 237 NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV--FGIVPDGTLQLLKEA 294
Query: 115 LEEL 118
L L
Sbjct: 295 LPHL 298
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 26.0 bits (57), Expect = 9.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 24 LAKPNLKDALKKWEEENGIP 43
LA P + L + EE +P
Sbjct: 14 LALPAVFGVLGRTEEALALP 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.134 0.381
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,071,000
Number of extensions: 178590
Number of successful extensions: 1734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 370
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.8 bits)