RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14661
(202 letters)
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 92.8 bits (229), Expect = 2e-24
Identities = 87/182 (47%), Positives = 115/182 (63%), Gaps = 7/182 (3%)
Query: 24 LAKP-NLKDALKKWEEENGIPISEAKEVGLQMQF--IEKMDSSLAVLTNCEKLSLSTNMI 80
+AK +KDA++ +EE + +EA++V L IEKMD++L+ L C+ L+LSTN I
Sbjct: 1 MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60
Query: 81 EKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVL 140
EKI+ LSG++ L++LSL RN IK L+ +A+TLEELW+SYN I GI + L+VL
Sbjct: 61 EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120
Query: 141 YMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLV----EGMDDPLYKSEVKKRLPNLKKLD 196
YMSNN + W E KL L DL+ GNPL E Y+ EV KRLPNLKKLD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Query: 197 GE 198
G
Sbjct: 181 GM 182
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 72.9 bits (178), Expect = 3e-17
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 6/155 (3%)
Query: 52 LQMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPL 111
L+ + +E++ ++ + + +L + L VL+ + + +E
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN 63
Query: 112 AETLEELWVSYNYIEKTKGI----GVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVF 167
L L +S N + + + LK+L +S N +K E K + L +L
Sbjct: 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGLKLEELWL 122
Query: 168 CGNPLVEGM-DDPLYKSEVKKRLPNLKKLDGEVLP 201
GN L + D Y S +++R P L +LDG LP
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELP 157
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 65.5 bits (159), Expect = 1e-14
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 73 LSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIG 132
L L+ + + L L + L L+ N +++ LE L S N +E G+
Sbjct: 3 LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62
Query: 133 VMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNL 192
+ +L+ L + NN +++ A L CP L+ L GN L + + + + + LP++
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ---EEGIQERLAEMLPSV 119
Query: 193 KKL 195
+
Sbjct: 120 SSI 122
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 60.8 bits (146), Expect = 9e-12
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
L N L+L N I I+ +S L KL+ L A N + + L L + L +N I
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANL-TNINWLSAGHNQIS 364
Query: 127 KTKGIGVMRKLKVLYMSNN 145
+ + ++ L +++
Sbjct: 365 DLTPLANLTRITQLGLNDQ 383
Score = 54.2 bits (129), Expect = 2e-09
Identities = 38/156 (24%), Positives = 59/156 (37%), Gaps = 32/156 (20%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA--------- 112
+LA LTN L L+ N I + LSGL KL L L N I + + L L
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294
Query: 113 ------------ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECP 160
+ L L + +N I + + KL+ L+ +NN V + + L
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS---LANLT 351
Query: 161 SLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
++ L N + + PL L + +L
Sbjct: 352 NINWLSAGHNQISD--LTPL------ANLTRITQLG 379
Score = 51.9 bits (123), Expect = 9e-09
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 65 AVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNY 124
L K L + + L ++ L R IKS G+E L L ++ S N
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL-NNLTQINFSNNQ 77
Query: 125 IEKTKGIGVMRKLKVLYMSNNLVKEW 150
+ + + KL + M+NN + +
Sbjct: 78 LTDITPLKNLTKLVDILMNNNQIADI 103
Score = 49.2 bits (116), Expect = 8e-08
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
S ++ LT ++L + N + ++ L+ L + LS N I L L + +L ++
Sbjct: 323 SPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANL-TRITQLGLN 381
Query: 122 YN 123
Sbjct: 382 DQ 383
Score = 45.4 bits (106), Expect = 2e-06
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
S L L I+ I+G+ L L ++ + N + L+ L L ++ ++
Sbjct: 39 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNL-TKLVDILMNN 97
Query: 123 NY 124
N
Sbjct: 98 NQ 99
Score = 41.1 bits (95), Expect = 4e-05
Identities = 36/153 (23%), Positives = 55/153 (35%), Gaps = 38/153 (24%)
Query: 68 TNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS------ 121
TN ++LSL+ N ++ I L+ L L L LA N I + A L L + L EL +
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKLGANQISN 277
Query: 122 ----------------YNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165
N +E I ++ L L + N + + + L L
Sbjct: 278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRL 334
Query: 166 VFCGNPLVEGMDDPLYKSEVK--KRLPNLKKLD 196
F N + S+V L N+ L
Sbjct: 335 FFANNKV----------SDVSSLANLTNINWLS 357
Score = 41.1 bits (95), Expect = 4e-05
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 80 IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKV 139
I +I + L + L + N+ L + + L I+ G+ + L
Sbjct: 12 INQIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQ 70
Query: 140 LYMSNNLVKEWAEFVKLGECPSLIDLVFC 168
+ SNN + + L L+D++
Sbjct: 71 INFSNNQLT---DITPLKNLTKLVDILMN 96
Score = 40.8 bits (94), Expect = 5e-05
Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
LTN E L + N I I L L L LSL N +K L L L +L ++ N I
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQIS 254
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
+ + KL L + N + + L
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTAL 287
Score = 34.2 bits (77), Expect = 0.008
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 27 PNLKDALKKWEEENGI--PISEA-----KEVGLQMQFIEKMDSSLAVLTNCEKLSLSTNM 79
L + +K + + +S+ + I+ +D + L N +++ S N
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77
Query: 80 IEKINGLSGLKKLKVL 95
+ I L L KL +
Sbjct: 78 LTDITPLKNLTKLVDI 93
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 53.8 bits (128), Expect = 5e-10
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 21/145 (14%)
Query: 75 LSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVM 134
L+ +IE+ + + + L L I L + + + S N I K G ++
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 135 RKLKVLYMSNNLVKE------------------WAEFVKLGECPSLIDLVFCGNPLVEGM 176
R+LK L ++NN + V+LG+ L L +
Sbjct: 63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122
Query: 177 DD---PLYKSEVKKRLPNLKKLDGE 198
Y+ V ++P ++ LD +
Sbjct: 123 PVTNKKHYRLYVIYKVPQVRVLDFQ 147
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 44.3 bits (103), Expect = 2e-06
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
L N K++ + + + L + LS + + G++ L L L + N I
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNN-LIGLELKDNQIT 76
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEW 150
+ + K+ L +S N +K
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNV 100
Score = 40.8 bits (94), Expect = 4e-05
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 80 IEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKV 139
I I L ++ ++N+ L + + L + +G+ + L
Sbjct: 9 INVIFPDPALANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGVQYLNNLIG 67
Query: 140 LYMSNNLVKEWAEFVKLGEC 159
L + +N + + A L +
Sbjct: 68 LELKDNQITDLAPLKNLTKI 87
Score = 38.5 bits (88), Expect = 2e-04
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 86 LSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKLKVLYMSN 144
L+ L KL L N I + L L L E+ + N I + L ++ ++N
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASL-PNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226
Score = 38.1 bits (87), Expect = 3e-04
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLA 112
+ LA L+ L N I I+ L+ L L + L N I + L
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANT- 216
Query: 113 ETLEELWVS 121
L + ++
Sbjct: 217 SNLFIVTLT 225
Score = 36.5 bits (83), Expect = 0.001
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNI 102
+ A L LS + I G+ L L L L N I
Sbjct: 35 VTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQI 75
Score = 30.4 bits (67), Expect = 0.097
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 115 LEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDL 165
L L N I + + L +++ NN + + L +L +
Sbjct: 175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIV 222
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 44.8 bits (104), Expect = 2e-06
Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ E+L++S N + ++ + +L+ L + N++ + L + L++L V YN +
Sbjct: 283 PPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAE---VPELPQNLKQLHVEYNPLR 337
Query: 127 KTKGIGVMRKLKVLYMSN 144
+ I ++ L M++
Sbjct: 338 EFPDI--PESVEDLRMNS 353
Score = 29.4 bits (64), Expect = 0.31
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
+ E L S N + ++ L + LK L + NN+K+ + L PL LE L VS N +E
Sbjct: 57 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPL---LEYLGVSNNQLE 111
Query: 127 KTKGIGVMRKLKVLYMSNNLVKEW 150
K + LK++ + NN +K+
Sbjct: 112 KLPELQNSSFLKIIDVDNNSLKKL 135
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 43.1 bits (100), Expect = 5e-06
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIE 126
L K L + + L ++ L R IKS G+E L L ++ S N +
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN-LTQINFSNNQLT 75
Query: 127 KTKGIGVMR 135
+ +
Sbjct: 76 DITPLKNLT 84
Score = 38.5 bits (88), Expect = 2e-04
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 78 NMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKTKGIGVMRKL 137
I +I + L + L + N+ L + + L I+ G+ + L
Sbjct: 6 TPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNL 64
Query: 138 KVLYMSNNLVKEWAEF 153
+ SNN + +
Sbjct: 65 TQINFSNNQLTDITPL 80
Score = 33.9 bits (76), Expect = 0.007
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLE 109
S L L I+ I+G+ L L ++ + N + L+
Sbjct: 35 SQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK 81
Score = 33.5 bits (75), Expect = 0.010
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVL 95
LA LT E+L +S+N + I+ L+ L L+ L
Sbjct: 166 KPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
Score = 32.7 bits (73), Expect = 0.018
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 78 NMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEEL 118
N + + L+ L L+ L ++ N + + L L LE L
Sbjct: 160 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKL-TNLESL 199
Score = 27.3 bits (59), Expect = 1.2
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 104 SFAGLEPLAE--TLEELWVSYNYIEKTKGIGVMRKLKVL 140
L+PLA TLE L +S N + + + L+ L
Sbjct: 161 QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 42.7 bits (99), Expect = 7e-06
Identities = 17/88 (19%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 63 SLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSY 122
S K +L + + L + + ++IKS G++ L + +L+++
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYL-PNVTKLFLNG 77
Query: 123 NYIEKTKGIGVMRKLKVLYMSNNLVKEW 150
N + K + ++ L L++ N VK+
Sbjct: 78 NKLTDIKPLANLKNLGWLFLDENKVKDL 105
Score = 40.8 bits (94), Expect = 4e-05
Identities = 12/91 (13%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 69 NCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKT 128
E +++ T I++I + +L + ++ L +++++ + + I+
Sbjct: 4 GSETITVPTP-IKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSV 61
Query: 129 KGIGVMRKLKVLYMSNNLVKEWAEFVKLGEC 159
+GI + + L+++ N + + L
Sbjct: 62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNL 92
Score = 37.7 bits (86), Expect = 3e-04
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 62 SSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSL 97
LA LT + L LS N I + L+GLK L VL L
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207
Score = 35.4 bits (80), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAETLEELWVS 121
LT + LSL N I I L+GL KL+ L L++N+I L L + L+ L +
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL-KNLDVLELF 208
Score = 32.7 bits (73), Expect = 0.018
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 105 FAGLEPLA--ETLEELWVSYNYIEKTKGIGVMRKLKVLYMSN 144
+ + PLA L+ L++S N+I + + ++ L VL + +
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFS 209
Score = 24.6 bits (52), Expect = 8.3
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 119 WVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKL 156
+ N I + + KL+ LY+S N + + L
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL 199
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 38.7 bits (88), Expect = 2e-04
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 63 SLAVLTNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNIKSFAGLE 109
+ L +S I + GL LKKL+ S N+K LE
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTLE 242
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 37.6 bits (85), Expect = 6e-04
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 69 NCEKLSLSTNMIEKING---LSGLKKLKVLSLARNNIKSFAGLEPLAE------TLEELW 119
+ + L + + L L++ +V+ L + + A + ++ L EL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELN 61
Query: 120 VSYNYI 125
+ N +
Sbjct: 62 LRSNEL 67
Score = 36.5 bits (82), Expect = 0.002
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 64 LAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAETLE 116
L +L C+ + L + + + L L L+L N + G+ + + L+
Sbjct: 23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD-VGVHCVLQGLQ 80
Score = 34.6 bits (77), Expect = 0.007
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 18/94 (19%)
Query: 68 TNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEPLAE-------T 114
+ L L+ + L L+ L L+ N + AG+ L E
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-GDAGILQLVESVRQPGCL 427
Query: 115 LEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVK 148
LE+L + Y + + +L+ L ++
Sbjct: 428 LEQLVLYDIYWSEE----MEDRLQALEKDKPSLR 457
Score = 29.6 bits (64), Expect = 0.26
Identities = 11/88 (12%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 115 LEELWVSYNYIEK---TKGIGVMRKLKVLYMSNNLVKE--WAEFVK-LGECPSLIDLVFC 168
++ L + + + + ++++ +V+ + + + E + L P+L +L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 169 GNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
N L + + + ++ ++KL
Sbjct: 64 SNELGDVGVHCVLQG-LQTPSCKIQKLS 90
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 36.2 bits (82), Expect = 0.002
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 11/122 (9%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNNI-----KSFAGLEPLAETLEELWV 120
+ L L N I +I LK L L L N I +FA L LE L++
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV----KLERLYL 86
Query: 121 SYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPL 180
S N +++ ++ N + K +++L +
Sbjct: 87 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146
Query: 181 YK 182
Sbjct: 147 QG 148
Score = 35.8 bits (81), Expect = 0.002
Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 2/145 (1%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSF-AGLEPL 111
++ + + + + ++ I I L L L N I A
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKG 193
Query: 112 AETLEELWVSYNYIEKTKGIGVMRKLKVLYMSNNLVKEWAEFVKLGECPSLIDLVFCGNP 171
L +L +S+N I + + + N K L + + + N
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
Query: 172 LVEGMDDPLYKSEVKKRLPNLKKLD 196
+ + + + +
Sbjct: 254 ISAIGSNDFCPPGYNTKKASYSGVS 278
Score = 27.3 bits (59), Expect = 1.1
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 8/61 (13%)
Query: 53 QMQFIEKMDSSLAVLTNCEKLSLSTNMIEKING--------LSGLKKLKVLSLARNNIKS 104
+ K+ LA + + L N I I + +SL N ++
Sbjct: 227 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
Query: 105 F 105
+
Sbjct: 287 W 287
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 32.4 bits (72), Expect = 0.029
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 55 QFIEKMDSSLAVLTNCEKLSLSTNMIE-KINGLSGLKKLKVLSLARNN 101
+ + L L L++S N + +I L++ V + A N
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 30.5 bits (67), Expect = 0.14
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 68 TNCEKLSLSTNMIEKI--NGLSGLKKLKVLSLARNN----IKSFAGLEPLAETLEELWVS 121
N L L N I GL+ LK L L+++ NN I L + + +
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL----QRFDVSAYA 299
Query: 122 YN 123
N
Sbjct: 300 NN 301
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 31.4 bits (69), Expect = 0.063
Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 90 KKLKVLSLARNNIKSFAGLEPLAETLEELWVSYNYIEKT------KGIGVMRKLKVLYMS 143
K LK+ ++ + KS + ++++E+ +S N I + I + L++ S
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 144 NN 145
+
Sbjct: 68 DI 69
Score = 27.9 bits (60), Expect = 0.93
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 57 IEKMDSSLAVLTNCEKLSLSTNMIEKI------NGLSGLKKLKVLSLARNNIKSFAGLEP 110
+ + + L + +++ LS N I ++ K L++ + P
Sbjct: 20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 79
Score = 27.2 bits (58), Expect = 1.6
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 67 LTNCEKLSLSTNMIEKINGLSGLKKLKVLSLARNNIKSFAGLEPLAE-------TLEELW 119
L +C + + L+ L L N I+ + L L L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAVRTLKTVIDEKMPDLLFLE 308
Query: 120 VSYNYI-EKTKGIGVMRKLKVLYMSNNL 146
++ N E+ + +R++ L
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGEL 336
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus
influenzae [TaxId: 727]}
Length = 134
Score = 30.0 bits (67), Expect = 0.091
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 20 KCALLAKPNLKDALKKWEEENGIPISE 46
C++LA+ +K A+ ++ + G+
Sbjct: 105 HCSILAEDAIKAAIADYKAKQGLEHHH 131
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 28.9 bits (63), Expect = 0.38
Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 95 LSLARNNIKSFAGLEPLAETLEELWVSYNYIEK-TKGIGVMRKLKVLYMSNNLVKEWAEF 153
L L N+ L++ + +++++ +++ + +SN++++
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 64
Query: 154 VKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRLPNLKKLD 196
L +C L +L G L + + + L + NL +L+
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTL------AKNSNLVRLN 101
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 27.7 bits (60), Expect = 0.92
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 142 MSNNLVKEWAEFVKLGECPSLIDLVFCGNPLVEGMDDPLYKSEVKKRL 189
+S+ + W F K GNP E ++ P Y E ++ +
Sbjct: 427 LSHTIQSAWITFAK------------TGNPSTEAVNWPAYHEETRETV 462
>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 325
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 8 KKGNEACRQAAEKCALLAKPNLKDALKKWEE 38
++GNE R A + P L A + W+
Sbjct: 289 REGNEIIRSACKWS-----PELAAACEIWKA 314
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 135
Score = 25.9 bits (57), Expect = 2.1
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 92 LKVLSLARNNIKSFAGLEPL-AETLEELWVSYNYIEK 127
+KV+SL +++ + L E E+L+ Y ++K
Sbjct: 1 MKVISLKKDSFNKGGAVITLLPEDKEDLFTVYQIVDK 37
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse
(Mus musculus), mitochondrial [TaxId: 10090]}
Length = 130
Score = 25.3 bits (55), Expect = 4.1
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 20 KCALLAKPNLKDALKKWEEEN 40
C++LA+ +K AL ++ +
Sbjct: 101 HCSMLAEDAIKAALADYKLKQ 121
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Length = 147
Score = 24.9 bits (54), Expect = 5.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 20 KCALLAKPNLKDALKKWEEEN 40
KCA L+ L+ + K E N
Sbjct: 127 KCATLSWKALEKGVAKEEGGN 147
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 24.6 bits (53), Expect = 7.1
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 7 MKKGNEACRQAAEKCALLAKPNLKDA---LKKWEEENGIPISEAKEVGLQMQ-----FIE 58
K + R AE+ + + +DA +K ++ I + + +Q I+
Sbjct: 110 RKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIK 169
Query: 59 KMDSSLA 65
K++++LA
Sbjct: 170 KIEAALA 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.381
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 749,028
Number of extensions: 33802
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 64
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)