BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14662
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RMN|A Chain A, The Solution Structure Of The P63 Dna-Binding Domain
Length = 233
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 40/184 (21%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS EL K++ I K PIQ+K++ PPP
Sbjct: 43 YSTELKKLYCQIAKTCPIQIKVM------TPPPQ-------------------------- 70
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
+RA P+Y + +H V+RCP H L E N+G A H++R ++H Q
Sbjct: 71 ----GAVIRAMPVYKKAEHVTEVVKRCPNH---ELSREFNEGQIAPPSHLIRVEGNSHAQ 123
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D +GR + + P PPQ G + T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ+
Sbjct: 124 YVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQV 183
Query: 230 LGRR 233
LGRR
Sbjct: 184 LGRR 187
>pdb|3QYM|A Chain A, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|B Chain B, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|C Chain C, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|D Chain D, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|E Chain E, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|F Chain F, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|G Chain G, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYM|H Chain H, Structure Of P63 Dna Binding Domain In Complex With A 10
Base Pair AT Rich Response Element Half Site
pdb|3QYN|A Chain A, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing 2 Base
Pair Spacer Between Half Sites
pdb|3QYN|B Chain B, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing 2 Base
Pair Spacer Between Half Sites
pdb|3QYN|C Chain C, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing 2 Base
Pair Spacer Between Half Sites
pdb|3QYN|D Chain D, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing 2 Base
Pair Spacer Between Half Sites
pdb|3US0|A Chain A, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing A Two Base
Pair "at" Spacer Between Half Sites
pdb|3US0|B Chain B, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing A Two Base
Pair "at" Spacer Between Half Sites
pdb|3US0|C Chain C, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing A Two Base
Pair "at" Spacer Between Half Sites
pdb|3US0|D Chain D, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair AT Rich Response Element Containing A Two Base
Pair "at" Spacer Between Half Sites
pdb|3US1|A Chain A, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair Response Element Containing A Two Base Pair
"gc" Spacer Between Half Sites
pdb|3US1|D Chain D, Structure Of P63 Dna Binding Domain In Complex With A 22
Base Pair Response Element Containing A Two Base Pair
"gc" Spacer Between Half Sites
pdb|3US2|A Chain A, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|B Chain B, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|C Chain C, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|D Chain D, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|G Chain G, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|H Chain H, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|I Chain I, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
pdb|3US2|J Chain J, Structure Of P63 Dna Binding Domain In Complex With A 19
Base Pair AT Rich Response Element Containing Two Half
Sites With A Single Base Pair Overlap
Length = 203
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 96/184 (52%), Gaps = 40/184 (21%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS EL K++ I K PIQ+K++ PPP
Sbjct: 35 YSTELKKLYCQIAKTCPIQIKVM------TPPPQGA------------------------ 64
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
+RA P+Y + +H V+RCP H L E N+G A H++R ++H Q
Sbjct: 65 ------VIRAMPVYKKAEHVTEVVKRCPNH---ELSREFNEGQIAPPSHLIRVEGNSHAQ 115
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D +GR + + P PPQ G + T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ+
Sbjct: 116 YVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQV 175
Query: 230 LGRR 233
LGRR
Sbjct: 176 LGRR 179
>pdb|2XWC|A Chain A, Crystal Structure Of The Dna Binding Domain Of Human Tp73
Refined At 1.8 A Resolution
pdb|4A63|A Chain A, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|C Chain C, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|E Chain E, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|G Chain G, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|I Chain I, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|K Chain K, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 208
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 40/186 (21%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS L K++ I K PIQ+K+ + PP
Sbjct: 34 YSPLLKKLYCQIAKTCPIQIKV-------STPP--------------------------- 59
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAH-CQ 169
PP +RA P+Y + +H V+RCP H L + N+G A H++R + Q
Sbjct: 60 --PPGTAIRAMPVYKKAEHVTDVVKRCPNH---ELGRDFNEGQSAPASHLIRVEGNNLSQ 114
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D +GR + V P PPQ G + T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ+
Sbjct: 115 YVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQV 174
Query: 230 LGRRSL 235
LGRRS
Sbjct: 175 LGRRSF 180
>pdb|3VD0|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|K Chain K, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD0|L Chain L, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|K Chain K, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD1|L Chain L, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD2|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD2|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD2|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD2|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD2|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|3VD2|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
Transactivation
pdb|4G82|A Chain A, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
To A Full Response-element
pdb|4G82|B Chain B, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
To A Full Response-element
pdb|4G83|A Chain A, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
To A Full Response-element
pdb|4G83|B Chain B, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
To A Full Response-element
Length = 210
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 40/186 (21%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS L K++ I K PIQ+K+ + PP
Sbjct: 42 YSPLLKKLYCQIAKTCPIQIKV-------STPP--------------------------- 67
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAH-CQ 169
PP +RA P+Y + +H V+RCP H L + N+G A H++R + Q
Sbjct: 68 --PPGTAIRAMPVYKKAEHVTDVVKRCPNH---ELGRDFNEGQSAPASHLIRVEGNNLSQ 122
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D +GR + V P PPQ G + T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ+
Sbjct: 123 YVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQV 182
Query: 230 LGRRSL 235
LGRRS
Sbjct: 183 LGRRSF 188
>pdb|3Q05|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q05|B Chain B, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q05|C Chain C, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q05|D Chain D, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3TS8|A Chain A, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
pdb|3TS8|B Chain B, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
pdb|3TS8|C Chain C, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
pdb|3TS8|D Chain D, Crystal Structure Of A Multidomain Human P53 Tetramer
Bound To The Natural Cdkn1a(P21) P53-Response Element
Length = 234
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F+ + K +P+Q L++ +TP
Sbjct: 33 YSPALNKMFVQLAKTVPVQ--------------LYVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
PP +RA IY Q H V RCP H + + + A +H++R + +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSDSDGL-----APPQHLIRVEGNLRAE 111
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D + RH+ V P PP+ G+D T+ + F+C +SC+GGM+RRP+L+++TLE+ G +
Sbjct: 112 YLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNL 171
Query: 230 LGRRSL 235
LGR S
Sbjct: 172 LGRDSF 177
>pdb|3Q06|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q06|B Chain B, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q06|C Chain C, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q06|D Chain D, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
Length = 231
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F+ + K +P+Q L++ +TP
Sbjct: 31 YSPALNKMFVQLAKTVPVQ--------------LYVDSTP-------------------- 56
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
PP +RA IY Q H V RCP H + + + A +H++R + +
Sbjct: 57 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSDSDGL-----APPQHLIRVEGNLRAE 109
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D + RH+ V P PP+ G+D T+ + F+C +SC+GGM+RRP+L+++TLE+ G +
Sbjct: 110 YLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNL 169
Query: 230 LGRRSL 235
LGR S
Sbjct: 170 LGRDSF 175
>pdb|3Q01|A Chain A, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
pdb|3Q01|B Chain B, An Induced Fit Mechanism Regulates P53 Dna Binding
Kinetics To Confer Sequence Specificity
Length = 233
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F+ + K +P+Q L++ +TP
Sbjct: 33 YSPALNKMFVQLAKTVPVQ--------------LYVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
PP +RA IY Q H V RCP H + + + A +H++R + +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERSSDSDGL-----APPQHLIRVEGNLRAE 111
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D + RH+ V P PP+ G+D T+ + F+C +SC+GGM+RRP+L+++TLE+ G +
Sbjct: 112 YLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNL 171
Query: 230 LGRRSL 235
LGR S
Sbjct: 172 LGRDSF 177
>pdb|2WGX|A Chain A, Human P53 Core Domain Mutant
M133l-V203a-Y236f-N239y-T253i- N268d
pdb|2WGX|B Chain B, Human P53 Core Domain Mutant
M133l-V203a-Y236f-N239y-T253i- N268d
Length = 219
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+F+C +SC+GGM+RRP+L+++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNFMCYSSCMGGMNRRPILIIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2FEJ|A Chain A, Solution Structure Of Human P53 Dna Binding Domain
Length = 204
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|1KZY|A Chain A, Crystal Structure Of The 53bp1 Brct Region Complexed To
Tumor Suppressor P53
pdb|1KZY|B Chain B, Crystal Structure Of The 53bp1 Brct Region Complexed To
Tumor Suppressor P53
Length = 195
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 32 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 58 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 106
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 107 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 166
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 167 SGNLLGRNSF 176
>pdb|1TSR|A Chain A, P53 Core Domain In Complex With Dna
pdb|1TSR|B Chain B, P53 Core Domain In Complex With Dna
pdb|1TSR|C Chain C, P53 Core Domain In Complex With Dna
pdb|1TUP|A Chain A, Tumor Suppressor P53 Complexed With Dna
pdb|1TUP|B Chain B, Tumor Suppressor P53 Complexed With Dna
pdb|1TUP|C Chain C, Tumor Suppressor P53 Complexed With Dna
pdb|2OCJ|A Chain A, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|B Chain B, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|C Chain C, Human P53 Core Domain In The Absence Of Dna
pdb|2OCJ|D Chain D, Human P53 Core Domain In The Absence Of Dna
Length = 219
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|2H1L|M Chain M, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|N Chain N, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|O Chain O, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|P Chain P, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|Q Chain Q, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|R Chain R, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|S Chain S, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|T Chain T, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|U Chain U, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|V Chain V, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|W Chain W, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
pdb|2H1L|X Chain X, The Structure Of The Oncoprotein Sv40 Large T Antigen And
P53 Tumor Suppressor Complex
Length = 203
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 37 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 62
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 63 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 111
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 112 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 171
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 172 SGNLLGRNSF 181
>pdb|2XWR|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human P53
With Extended N Terminus
pdb|2XWR|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human P53
With Extended N Terminus
Length = 205
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 38 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 63
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 64 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 112
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 113 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 172
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 173 SGNLLGRNSF 182
>pdb|2AC0|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2AC0|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2AC0|C Chain C, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2AC0|D Chain D, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex I)
pdb|2ADY|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iv)
pdb|2ADY|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iv)
pdb|2AHI|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2AHI|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2AHI|C Chain C, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2AHI|D Chain D, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Iii)
pdb|2ATA|A Chain A, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|2ATA|B Chain B, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|2ATA|C Chain C, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|2ATA|D Chain D, Structural Basis Of Dna Recognition By P53 Tetramers
(Complex Ii)
pdb|3IGL|A Chain A, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 1)
pdb|3KZ8|A Chain A, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 3)
pdb|3KZ8|B Chain B, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 3)
Length = 200
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|1YCS|A Chain A, P53-53bp2 Complex
Length = 199
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|2QXA|A Chain A, Human P53 Core Domain Mutant V157f
pdb|2QXA|B Chain B, Human P53 Core Domain Mutant V157f
pdb|2QXA|C Chain C, Human P53 Core Domain Mutant V157f
pdb|2QXA|D Chain D, Human P53 Core Domain Mutant V157f
Length = 195
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 32 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP RA IY Q H V RCP H SD L A +H++R +
Sbjct: 58 --PPGTRFRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 106
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 107 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 166
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 167 SGNLLGRNSF 176
>pdb|2YBG|A Chain A, Structure Of Lys120-Acetylated P53 Core Domain
pdb|2YBG|B Chain B, Structure Of Lys120-Acetylated P53 Core Domain
pdb|2YBG|C Chain C, Structure Of Lys120-Acetylated P53 Core Domain
pdb|2YBG|D Chain D, Structure Of Lys120-Acetylated P53 Core Domain
Length = 200
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|1GZH|C Chain C, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound
To The P53 Tumor Supressor
Length = 198
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 32 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 58 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 106
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 107 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 166
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 167 SGNLLGRNSF 176
>pdb|2J1Z|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-F270l
pdb|2J1Z|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-F270l
Length = 219
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR SL
Sbjct: 168 SGNLLGRDSL 177
>pdb|2PCX|A Chain A, Crystal Structure Of P53dbd(R282q) At 1.54-Angstrom
Resolution
Length = 220
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 39 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 64
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 65 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 113
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 114 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 173
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 174 SGNLLGRNSF 183
>pdb|3KMD|A Chain A, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
pdb|3KMD|B Chain B, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
pdb|3KMD|D Chain D, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
pdb|3KMD|C Chain C, Crystal Structure Of The P53 Core Domain Bound To A Full
Consensus Site As A Self-Assembled Tetramer
Length = 200
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 35 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 60
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 61 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 109
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 110 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 169
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 170 SGNLLGRNSF 179
>pdb|2QXB|A Chain A, Human P53 Core Domain Mutant N235k
pdb|2QXB|B Chain B, Human P53 Core Domain Mutant N235k
pdb|2QXB|C Chain C, Human P53 Core Domain Mutant N235k
pdb|2QXB|D Chain D, Human P53 Core Domain Mutant N235k
Length = 195
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 32 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 58 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 106
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y ++C +SC+GGM+RRP+L ++TLE+
Sbjct: 107 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYKYMCNSSCMGGMNRRPILTIITLEDS 166
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 167 SGNLLGRNSF 176
>pdb|2QXC|A Chain A, Human P53 Core Domain Mutant N239y
pdb|2QXC|B Chain B, Human P53 Core Domain Mutant N239y
pdb|2QXC|C Chain C, Human P53 Core Domain Mutant N239y
pdb|2QXC|D Chain D, Human P53 Core Domain Mutant N239y
Length = 195
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 32 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 58 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 106
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 107 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 166
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 167 SGNLLGRNSF 176
>pdb|2J21|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R282w
pdb|2J21|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R282w
Length = 219
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2BIM|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h
pdb|2BIM|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273h
Length = 219
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|1UOL|A Chain A, Crystal Structure Of The Human P53 Core Domain Mutant
M133lV203AN239YN268D AT 1.9 A RESOLUTION.
pdb|1UOL|B Chain B, Crystal Structure Of The Human P53 Core Domain Mutant
M133lV203AN239YN268D AT 1.9 A RESOLUTION
Length = 219
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2J20|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c
pdb|2J20|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-N268d-R273c
Length = 219
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2QVQ|A Chain A, Human P53 Core Domain Mutant V157fN235KN239Y
Length = 196
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRFRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y ++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYKYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|2J1X|A Chain A, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d
pdb|2J1X|B Chain B, Human P53 Core Domain Mutant M133l-V203a-Y220c-N239y-N268d
pdb|2VUK|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small-molecule Drug Phikan083
pdb|2VUK|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small-molecule Drug Phikan083
pdb|2X0U|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To A
2- Amino Substituted Benzothiazole Scaffold
pdb|2X0U|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To A
2- Amino Substituted Benzothiazole Scaffold
pdb|2X0V|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To 4-(
Trifluoromethyl)benzene-1,2-Diamine
pdb|2X0V|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To 4-(
Trifluoromethyl)benzene-1,2-Diamine
pdb|2X0W|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To
5,6- Dimethoxy-2-Methylbenzothiazole
pdb|2X0W|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To
5,6- Dimethoxy-2-Methylbenzothiazole
pdb|4AGL|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan784
pdb|4AGL|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan784
pdb|4AGM|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5086
pdb|4AGM|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5086
pdb|4AGN|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5116
pdb|4AGN|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5116
pdb|4AGO|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5174
pdb|4AGO|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5174
pdb|4AGP|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5176
pdb|4AGP|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5176
pdb|4AGQ|A Chain A, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5196
pdb|4AGQ|B Chain B, Structure Of The P53 Core Domain Mutant Y220c Bound To The
Stabilizing Small Molecule Phikan5196
Length = 219
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPCEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|1GZH|A Chain A, Crystal Structure Of The Brct Domains Of Human 53bp1 Bound
To The P53 Tumor Supressor
Length = 198
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 32 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 58 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 106
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G++ T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 107 LRVEYLDDRNTFRHSVVVPYEPPEVGSECTTIHYNYMCNSSCMGGMNRRPILTIITLEDS 166
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 167 SGNLLGRNSF 176
>pdb|3D05|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (Ii)
pdb|3D06|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (I)
pdb|3D07|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s (Iii)
pdb|3D07|B Chain B, Human P53 Core Domain With Hot Spot Mutation R249s (Iii)
Length = 200
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRSPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|2J1W|A Chain A, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d
pdb|2J1W|B Chain B, Human P53 Core Domain Mutant M133l-v143a-v203a-n239y-n268d
Length = 219
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPAQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2BIO|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-R249s-N268d
Length = 219
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRSPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2J1Y|A Chain A, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
pdb|2J1Y|B Chain B, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
pdb|2J1Y|C Chain C, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
pdb|2J1Y|D Chain D, Human P53 Core Domain Mutant M133l-V203a-N239y-G245s-N268d
Length = 200
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q H V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+G M+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGSMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2BIN|A Chain A, Human P53 Core Domain Mutant M133l-H168r-V203a-N239y-N268d
Length = 219
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+RRP+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRRPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|3D09|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And
Second-Site Suppressor Mutations H168r And T123a
Length = 200
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRSPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|3D08|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And
Second-Site Suppressor Mutation H168r
pdb|3D0A|A Chain A, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3D0A|B Chain B, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3D0A|C Chain C, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3D0A|D Chain D, Human P53 Core Domain With Hot Spot Mutation R249s And
Second Site Suppressor Mutation H168r In
Sequence-Specific Complex With Dna
pdb|3IGK|A Chain A, Diversity In Dna Recognition By P53 Revealed By Crystal
Structures With Hoogsteen Base Pairs (P53-Dna Complex 2)
Length = 200
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKMFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+
Sbjct: 108 LRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRSPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRNSF 177
>pdb|3EXJ|A Chain A, Crystal Structure Of A P53 Core Tetramer Bound To Dna
pdb|3EXJ|B Chain B, Crystal Structure Of A P53 Core Tetramer Bound To Dna
pdb|3EXL|A Chain A, Crystal Structure Of A P53 Core Tetramer Bound To Dna
Length = 197
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ ATP
Sbjct: 28 YSPPLNKLFCQLAKTCPVQ--------------LWVSATP-------------------- 53
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
P +RA IY + H V RCP H C++ G A +H++R + + +
Sbjct: 54 --PAGSRVRAMAIYKKSQHMTEVVRRCPHH---ERCSD-GDGL-APPQHLIRVEGNLYPE 106
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D ++ RH+ V P PP+ G++ T+ Y ++C +SC+GGM+RRP+L ++TLE+ G +
Sbjct: 107 YLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNL 166
Query: 230 LGRRSL 235
LGR S
Sbjct: 167 LGRDSF 172
>pdb|2GEQ|A Chain A, Crystal Structure Of A P53 Core Dimer Bound To Dna
pdb|2GEQ|B Chain B, Crystal Structure Of A P53 Core Dimer Bound To Dna
pdb|2IOI|A Chain A, Crystal Structure Of The Mouse P53 Core Domain At 1.55 A
pdb|2IOM|A Chain A, Mouse P53 Core Domain Soaked With 2-Propanol
pdb|2IOO|A Chain A, Crystal Structure Of The Mouse P53 Core Domain
Length = 201
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ ATP
Sbjct: 32 YSPPLNKLFCQLAKTCPVQ--------------LWVSATP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
P +RA IY + H V RCP H C++ G A +H++R + + +
Sbjct: 58 --PAGSRVRAMAIYKKSQHMTEVVRRCPHH---ERCSD-GDGL-APPQHLIRVEGNLYPE 110
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D ++ RH+ V P PP+ G++ T+ Y ++C +SC+GGM+RRP+L ++TLE+ G +
Sbjct: 111 YLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNL 170
Query: 230 LGRRSL 235
LGR S
Sbjct: 171 LGRDSF 176
>pdb|2P52|A Chain A, Mouse P53 Dna-Binding Domain In Zinc-Free Oxidized State
Length = 196
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ ATP
Sbjct: 32 YSPPLNKLFCQLAKTCPVQ--------------LWVSATP-------------------- 57
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQ 169
P +RA IY + H V RCP H C++ G A +H++R + + +
Sbjct: 58 --PAGSRVRAMAIYKKSQHMTEVVRRCPHH---ERCSD-GDGL-APPQHLIRVEGNLYPE 110
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D ++ RH+ V P PP+ G++ T+ Y ++C +SC+GGM+RRP+L ++TLE+ G +
Sbjct: 111 YLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNL 170
Query: 230 LGRRSL 235
LGR S
Sbjct: 171 LGRDSF 176
>pdb|2BIQ|A Chain A, Human P53 Core Domain Mutant
T123a-M133l-H168r-V203a-N239y- R249s-N268d
Length = 219
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRSPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|2BIP|A Chain A, Human P53 Core Domain Mutant
M133l-H168r-V203a-N239y-R249s- N268d
Length = 219
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 50/190 (26%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ +TP
Sbjct: 33 YSPALNKLFCQLAKTCPVQ--------------LWVDSTP-------------------- 58
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHV----SDALCNEINKGFEAVVKHIVRCT-S 165
PP +RA IY Q V RCP H SD L A +H++R +
Sbjct: 59 --PPGTRVRAMAIYKQSQRMTEVVRRCPHHERCSDSDGL---------APPQHLIRVEGN 107
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+
Sbjct: 108 LRAEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCYSSCMGGMNRSPILTIITLEDS 167
Query: 226 HGQILGRRSL 235
G +LGR S
Sbjct: 168 SGNLLGRDSF 177
>pdb|1HU8|A Chain A, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain
At 2.7a Resolution
pdb|1HU8|B Chain B, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain
At 2.7a Resolution
pdb|1HU8|C Chain C, Crystal Structure Of The Mouse P53 Core Dna-Binding Domain
At 2.7a Resolution
Length = 186
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 42/186 (22%)
Query: 51 YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
YS LNK+F + K P+Q L++ ATP
Sbjct: 25 YSPPLNKLFCQLAKTCPVQ--------------LWVSATP-------------------- 50
Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHC-Q 169
P +RA IY + H V RCP H C++ G A +H++R +
Sbjct: 51 --PAGSRVRAMAIYKKSQHMTEVVRRCPHH---ERCSD-GDGL-APPQHLIRVEGNLAPE 103
Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
Y D ++ RH+ V P PP+ G++ T+ Y ++C +SC+GGM+RRP+L ++TLE+ G +
Sbjct: 104 YLEDRQTFRHSVVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNL 163
Query: 230 LGRRSL 235
LGR S
Sbjct: 164 LGRDSF 169
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 184 PLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLL 219
PL G DT + SFV C GG+ +RPV+ +
Sbjct: 99 PLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFV 134
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 184 PLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLL 219
PL G DT + SFV C GG+ +RPV+ +
Sbjct: 92 PLVSSSSGKDTDGGITSFVRTVLCEGGVPQRPVIFV 127
>pdb|1K0F|A Chain A, Crystal Structure Of Zn(Ii)-Free T. Pallidum Troa
Length = 277
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 29 VGTTLALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRA 88
V L+LE + HV++ + +SY + V+ + K+LP + + + + L
Sbjct: 88 VSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQ--LDK 145
Query: 89 TPIYSQDDHRGRPVERCPLHVCRDPPPLFLRA 120
Y + + P ER L D F RA
Sbjct: 146 LDAYVRRKAQSLPAERRVLVTAHDAFGYFSRA 177
>pdb|1TOA|A Chain A, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
pdb|1TOA|B Chain B, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
Length = 313
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 33 LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIY 92
L+LE + HV++ + +SY + V+ + K+LP + + + + L Y
Sbjct: 128 LSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQ--LDKLDAY 185
Query: 93 SQDDHRGRPVERCPLHVCRDPPPLFLRA 120
+ + P ER L D F RA
Sbjct: 186 VRRKAQSLPAERRVLVTAHDAFGYFSRA 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,481,212
Number of Sequences: 62578
Number of extensions: 311888
Number of successful extensions: 646
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 88
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)