Query psy14662
Match_columns 237
No_of_seqs 137 out of 171
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:27:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q01_A Cellular tumor antigen 100.0 2.5E-63 8.4E-68 439.7 15.0 175 21-237 3-179 (233)
2 2xip_A Tumour protein P73; pho 100.0 1.3E-62 4.4E-67 429.0 14.6 177 21-237 4-182 (208)
3 3d06_A Cellular tumor antigen 100.0 4.2E-62 1.4E-66 423.6 13.7 175 21-237 3-179 (200)
4 2rmn_A Tumor protein 63; beta 100.0 5.5E-62 1.9E-66 431.1 12.9 178 20-237 12-191 (233)
5 3q01_A Cellular tumor antigen 98.9 4.4E-10 1.5E-14 99.6 2.9 67 50-128 40-116 (233)
6 2xip_A Tumour protein P73; pho 98.7 5E-09 1.7E-13 91.4 2.1 67 50-128 41-119 (208)
7 3d06_A Cellular tumor antigen 98.7 4.6E-09 1.6E-13 91.1 1.7 67 50-128 40-116 (200)
8 2rmn_A Tumor protein 63; beta 98.6 8E-09 2.8E-13 91.5 0.6 67 50-128 50-128 (233)
9 1t4w_A CEP-1, C.elegans P53 tu 96.6 0.0091 3.1E-07 50.9 8.5 137 52-233 25-170 (196)
10 1ikn_C P50D, protein (NF-kappa 34.7 26 0.00091 27.7 3.0 30 202-231 11-49 (119)
11 1u36_A DNA-binding, nuclear fa 29.3 23 0.00079 27.5 1.7 29 202-230 11-48 (106)
12 1h7d_A Aminolevulinic acid syn 25.6 53 0.0018 22.4 2.8 14 96-109 2-15 (49)
13 3kdf_D Replication protein A 3 25.1 24 0.00084 27.2 1.2 33 202-234 34-67 (132)
14 4gop_B Putative uncharacterize 22.1 66 0.0023 24.8 3.2 25 210-234 47-71 (136)
15 2p9r_A Alpha-2-M, alpha-2-macr 21.8 1.9E+02 0.0065 20.6 5.5 37 195-233 17-53 (102)
No 1
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain, oligomerization, TP53, TUMO suppressor, dimer, DNA binding, antitumor protein; 2.10A {Homo sapiens} PDB: 3q05_A* 3ts8_A 3q06_A* 1a1u_A
Probab=100.00 E-value=2.5e-63 Score=439.70 Aligned_cols=175 Identities=34% Similarity=0.646 Sum_probs=159.6
Q ss_pred CCCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCC
Q psy14662 21 PQGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRG 99 (237)
Q Consensus 21 ~~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~ 99 (237)
-+|+++.++|.. |+|.|.+ ++.+++++||||+.||||||+|+++|||+|+++. +|
T Consensus 3 ~vPs~~~ypG~~~F~v~f~~-s~t~Ks~twtYS~~LnKLf~~~~k~cPv~~~~~~------~P----------------- 58 (233)
T 3q01_A 3 SVPSQKTYQGSYGFRLGFLH-SGTAKSVTCTYSPALNKMFVQLAKTVPVQLYVDS------TP----------------- 58 (233)
T ss_dssp CCCCCCCBCTTTTCEEECCC-CCCCTTCSEEEETTTTEEEECTTCCEEEEEECSS------CC-----------------
T ss_pred cCCCCCCcCCcceEEEEecc-CCCCCCCCeEEchhhCeeEecccCccceEEEecc------CC-----------------
Confidence 468888998877 8888887 4678889999999999999999999999999988 55
Q ss_pred CceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeC-CCceeccCCCCCCc
Q psy14662 100 RPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQYPMDERSGR 178 (237)
Q Consensus 100 ~~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRce-n~~A~Y~~d~~t~R 178 (237)
|++..||++++|++.||++++|+||||| +.+++ |+| .++++|||||+ |+.|+|++|++++|
T Consensus 59 -------------p~g~~vRam~Vy~~~eh~~e~V~RCp~H---~~~~d-~d~-~~~~~HliR~egn~~a~Y~~d~~t~R 120 (233)
T 3q01_A 59 -------------PPGTRVRAMAIYKQSQHMTEVVRRCPHH---ERSSD-SDG-LAPPQHLIRVEGNLRAEYLDDPNTFR 120 (233)
T ss_dssp -------------CTTCEEEEEEEESSGGGTTSCCCCCHHH---HSCSC-CCC-SSCTTCSEEEESCTTCEEEECTTTCC
T ss_pred -------------CCCCEEEEEEEEcchHhcCCCcccCccc---ccccc-CCC-CCCcccEEEEcCCcceEEecCCCcce
Confidence 7788888888888899999999999999 44444 556 46789999998 88999999999999
Q ss_pred eEEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662 179 HTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF 237 (237)
Q Consensus 179 ~SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev 237 (237)
+||+||||+||+|++++|++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus 121 ~sV~VP~e~pq~G~~~~ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~vLGR~~~ev 179 (233)
T 3q01_A 121 HSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEV 179 (233)
T ss_dssp EEEEEECCCCCTTCSCEEEEEEECSCTTCTTTTTTCCEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEecCCCCCCcceEEEEEEeeecCccCCCcccceeEEEEEEECCCCCEeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999986
No 2
>2xip_A Tumour protein P73; phosphoprotein, tumor suppressor, transcription, metal-bindi nucleus, cell cycle, transcription regulation; HET: TAM; 1.82A {Homo sapiens} PDB: 2xwc_A* 4a63_A 3vd0_A* 3vd1_A* 3vd2_A* 3qyn_A 3qym_A 3us0_A 3us1_A 3us2_A
Probab=100.00 E-value=1.3e-62 Score=429.02 Aligned_cols=177 Identities=37% Similarity=0.696 Sum_probs=160.5
Q ss_pred CCCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCC
Q psy14662 21 PQGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRG 99 (237)
Q Consensus 21 ~~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~ 99 (237)
-+|+++.++|.. |+|.|.+. +.+++++|+||+.|||||++|+++|||+|+++. +|
T Consensus 4 ~~ps~~~ypG~~~F~v~f~~s-~t~Ks~~wtYS~~LnKLf~~m~k~cpv~~~~~~------~p----------------- 59 (208)
T 2xip_A 4 VIPSNTDYPGPHHFEVTFQQS-STAKSATWTYSPLLKKLYCQIAKTCPIQIKVST------PP----------------- 59 (208)
T ss_dssp CCCCCCCBCTTTTCEEECCCC-CCSTTCSEEEETTTTEEEECTTSEEEEEEECSS------CC-----------------
T ss_pred cCCCCCCCCCccceEEEeecC-CCCCcCCEEEchhhCceeEeccCCEEEEEEecc------CC-----------------
Confidence 367888999888 88998864 467889999999999999999999999999988 55
Q ss_pred CceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeC-CCceeccCCCCCCc
Q psy14662 100 RPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQYPMDERSGR 178 (237)
Q Consensus 100 ~~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRce-n~~A~Y~~d~~t~R 178 (237)
|++..||++++|+++||++++|+||||| +.++++|+|+.++.+|||||+ |+.|+|++|+.++|
T Consensus 60 -------------p~g~~iRa~~Vy~~~e~~~~~V~RC~~H---~~~~~~~~~~~~~~~HliR~e~~~~a~Y~~d~~t~R 123 (208)
T 2xip_A 60 -------------PPGTAIRAMPVYKKAEHVTDVVKRCPNH---ELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGR 123 (208)
T ss_dssp -------------CTTCEEEEEEEECSTTTTTSBCCCCHHH---HHSSTTTTTCCSCTTCSEEEESCTTCEEEECTTTCC
T ss_pred -------------CCCCEEEEEEEEcChHhCCcCcccCccc---cccccccCCCCCCcccEEEEcCCCceEEeccCCCCe
Confidence 7899999999999999999999999999 445677888888889999998 67899999999999
Q ss_pred eEEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662 179 HTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF 237 (237)
Q Consensus 179 ~SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev 237 (237)
+||+||||.||+|++++|++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus 124 ~sV~VP~e~pq~G~~~~t~~~~FmC~sSC~gg~nRRpi~lifTLE~~~G~vLGR~~~~v 182 (208)
T 2xip_A 124 QSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMRDGQVLGRRSFEG 182 (208)
T ss_dssp EEEEEECCCCSTTCCCEEEEEEECSCGGGCC---CCCEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEeECCCCCCCCeEEEEEEEeEccCCCCCccccceEEEEEEEECCCCCEeeeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999986
No 3
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ...
Probab=100.00 E-value=4.2e-62 Score=423.57 Aligned_cols=175 Identities=34% Similarity=0.644 Sum_probs=151.1
Q ss_pred CCCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCC
Q psy14662 21 PQGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRG 99 (237)
Q Consensus 21 ~~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~ 99 (237)
.+|+++.++|.+ |+|++.+. +.+++++|+||+.|||||++|+++|||+|+++. +|
T Consensus 3 ~~Ps~~~ypG~~~F~v~~~~s-~~~Ks~~wtYS~~L~KLf~~m~k~~pv~~~~~~------~p----------------- 58 (200)
T 3d06_A 3 SVPSQKTYQGSYGFRLGFLHS-GTAKSVTCTYSPALNKMFCQLAKTCPVQLWVDS------TP----------------- 58 (200)
T ss_dssp -CCCCCCBCTTTTCEEECC--------CCEEEETTTTEEEECTTSCEEEEEECSS------CC-----------------
T ss_pred cCCcCCCcCCccCeEEEeccC-CCCCcCCEEEchhhCeeEEccCCcEEEEEEecC------CC-----------------
Confidence 467888888877 88888774 578889999999999999999999999999987 55
Q ss_pred CceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeC-CCceeccCCCCCCc
Q psy14662 100 RPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQYPMDERSGR 178 (237)
Q Consensus 100 ~~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRce-n~~A~Y~~d~~t~R 178 (237)
|++..||++++|+++||++++|+||+||+. .++. ++. ++++|||||+ |+.|+|++|++++|
T Consensus 59 -------------p~~~~iRa~~Vy~~~e~~~~~V~RC~~H~~---~~~~-~~~-~~~~HliR~~gn~~a~Y~~d~~t~R 120 (200)
T 3d06_A 59 -------------PPGTRVRAMAIYKQSQHMTEVVRRCPHHER---CSDS-DGL-APPQHLIRVEGNLRVEYLDDRNTFR 120 (200)
T ss_dssp -------------CTTCEEEEEEEESSGGGTTSCCCCCHHHHC----------C-CCTTCSEEEESCTTCEEEECTTTCC
T ss_pred -------------CCCCEEEEEEEEcchhhCCcCcccCccccc---cccC-CCC-CccceEEEEcCCCccEEecCCCCce
Confidence 788999999999999999999999999953 3333 343 6789999999 89999999999999
Q ss_pred eEEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662 179 HTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF 237 (237)
Q Consensus 179 ~SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev 237 (237)
+||+||||.||+|++++|++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus 121 ~sV~VP~e~p~~G~~~~t~~~~FmC~sSC~gg~nRRpi~liftLE~~~G~vLGr~~~~v 179 (200)
T 3d06_A 121 HSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRSPILTIITLEDSSGNLLGRNSFEV 179 (200)
T ss_dssp EEEEEECCCCCTTCSSEEEEEEECSCTTCTTTTTTCCEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEEEECCCCCCCCceEEEEEEeEccCCCCCccccceEEEEEEEECCCCCEeceeEEee
Confidence 99999999999999999999999999999999999999999999999999999999986
No 4
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family, activator, alternative promoter usage, alternative splicing; NMR {Homo sapiens}
Probab=100.00 E-value=5.5e-62 Score=431.12 Aligned_cols=178 Identities=37% Similarity=0.725 Sum_probs=163.5
Q ss_pred CCCCCCcccccce-EEEEEcccCCcccccCCeehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccC
Q psy14662 20 RPQGGDIAQVGTT-LALELKQVCDHVFYSIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHR 98 (237)
Q Consensus 20 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~s~wtYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~ 98 (237)
..+|+++.++|-+ |+|.|.+. +.+++++|+||+.||||||+|+++|||+|+|+. +|
T Consensus 12 ~~vPs~~~ypG~~~F~v~f~~s-~~~Ks~~wtYS~~LnKLf~~m~k~cPv~~~~~~------~P---------------- 68 (233)
T 2rmn_A 12 PAIPSNTDYPGPHSFDVSFQQS-STAKSATWTYSTELKKLYCQIAKTCPIQIKVMT------PP---------------- 68 (233)
T ss_dssp CCCCCCCCBCTTTTCEEECCCC-CCCTTCSEEEETTTTEEEECTTCCEEEEEECSS------CC----------------
T ss_pred CCCCCCCCCCCccceEEEeccC-CCCccCceEEchhhCceeEeccCCeEEEEEecC------CC----------------
Confidence 4567888898866 88988875 467889999999999999999999999999988 55
Q ss_pred CCceeecCCCCCCCCCCCeeeEEEeeecCCCCCCcccCCCCCccccccccccCCCccccCcEEEeC-CCceeccCCCCCC
Q psy14662 99 GRPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHCQYPMDERSG 177 (237)
Q Consensus 99 ~~~v~rcP~h~~~~p~~~~iR~~~~y~~~eh~~e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRce-n~~A~Y~~d~~t~ 177 (237)
|++..||++++|++.||++++|+||+|| +..+++|+|..++++|||||+ |..|+|++|+.++
T Consensus 69 --------------p~g~~iRa~~Vy~~~e~~~e~V~RC~~H---~~~~~~~~~~~~p~~HlIR~e~n~~a~Y~~d~~t~ 131 (233)
T 2rmn_A 69 --------------PQGAVIRAMPVYKKAEHVTEVVKRCPNH---ELSREFNEGQIAPPSHLIRVEGNSHAQYVEDPITG 131 (233)
T ss_dssp --------------CTTCEEEEEEEESSHHHHTSCCCCCHHH---HHSCCCCTTCSSCTTSSEEEESCTTCEEEECTTTC
T ss_pred --------------CCCCEEEEEEEEcChhhCCcCcccCccc---ccccccccCCCCCcceEEEeCCCCccEEccCCCcc
Confidence 7899999999999999999999999999 455777888777889999999 5789999999999
Q ss_pred ceEEeecCCCCCCCCCceeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEEEeeC
Q psy14662 178 RHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRRSLSF 237 (237)
Q Consensus 178 R~SV~VP~e~Pq~Gse~~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr~~ev 237 (237)
|+||+||||.||+|++++|++|+|||+|||+||||||||+|||||||++|+|||||+|+|
T Consensus 132 R~sV~VP~e~pq~Gs~~~ti~~~FmC~sSC~ggmNRRpi~lifTLE~~~G~VLGR~~~~v 191 (233)
T 2rmn_A 132 RQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEA 191 (233)
T ss_dssp CEEEEEECCCCCTTSSEEEEEEEESSCTTSTTTTTTCCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEeCCCCCCCceeEEEeEEeEccCCCCCccccceeEEEEEEEcCCCCEeeeeEEee
Confidence 999999999999999999999999999999999999999999999999999999999986
No 5
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain, oligomerization, TP53, TUMO suppressor, dimer, DNA binding, antitumor protein; 2.10A {Homo sapiens} PDB: 3q05_A* 3ts8_A 3q06_A* 1a1u_A
Probab=98.90 E-value=4.4e-10 Score=99.62 Aligned_cols=67 Identities=27% Similarity=0.396 Sum_probs=55.6
Q ss_pred eehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCCceeecCCCC-CC-----CCCCCeeeEE--
Q psy14662 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV-CR-----DPPPLFLRAT-- 121 (237)
Q Consensus 50 tYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~~v~rcP~h~-~~-----~p~~~~iR~~-- 121 (237)
.|-.+-+.+.+++....+.. +. +.|||||||++.||++|+|+|||+|+ ++ +|++|+||++
T Consensus 40 Lf~~~~k~cPv~~~~~~~Pp-----------~g-~~vRam~Vy~~~eh~~e~V~RCp~H~~~~d~d~~~~~~HliR~egn 107 (233)
T 3q01_A 40 MFVQLAKTVPVQLYVDSTPP-----------PG-TRVRAMAIYKQSQHMTEVVRRCPHHERSSDSDGLAPPQHLIRVEGN 107 (233)
T ss_dssp EEECTTCCEEEEEECSSCCC-----------TT-CEEEEEEEESSGGGTTSCCCCCHHHHSCSCCCCSSCTTCSEEEESC
T ss_pred eEecccCccceEEEeccCCC-----------CC-CEEEEEEEEcchHhcCCCcccCccccccccCCCCCCcccEEEEcCC
Confidence 67777888888988766644 22 78999999999999999999999996 42 3889999985
Q ss_pred --EeeecCC
Q psy14662 122 --PIYSQDD 128 (237)
Q Consensus 122 --~~y~~~e 128 (237)
|.|.+|.
T Consensus 108 ~~a~Y~~d~ 116 (233)
T 3q01_A 108 LRAEYLDDP 116 (233)
T ss_dssp TTCEEEECT
T ss_pred cceEEecCC
Confidence 8999873
No 6
>2xip_A Tumour protein P73; phosphoprotein, tumor suppressor, transcription, metal-bindi nucleus, cell cycle, transcription regulation; HET: TAM; 1.82A {Homo sapiens} PDB: 2xwc_A* 4a63_A 3vd0_A* 3vd1_A* 3vd2_A* 3qyn_A 3qym_A 3us0_A 3us1_A 3us2_A
Probab=98.67 E-value=5e-09 Score=91.39 Aligned_cols=67 Identities=30% Similarity=0.495 Sum_probs=52.3
Q ss_pred eehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCCceeecCCCC-CC-------CCCCCeeeEE
Q psy14662 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV-CR-------DPPPLFLRAT 121 (237)
Q Consensus 50 tYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~~v~rcP~h~-~~-------~p~~~~iR~~ 121 (237)
.|-.+-+.+.+++...-+.. +. +.||||+||++.||+.++|+|||+|+ +. .|..|+||++
T Consensus 41 Lf~~m~k~cpv~~~~~~~pp-----------~g-~~iRa~~Vy~~~e~~~~~V~RC~~H~~~~~~~~~~~~~~~HliR~e 108 (208)
T 2xip_A 41 LYCQIAKTCPIQIKVSTPPP-----------PG-TAIRAMPVYKKAEHVTDVVKRCPNHELGRDFNEGQSAPASHLIRVE 108 (208)
T ss_dssp EEECTTSEEEEEEECSSCCC-----------TT-CEEEEEEEECSTTTTTSBCCCCHHHHHSSTTTTTCCSCTTCSEEEE
T ss_pred eeEeccCCEEEEEEeccCCC-----------CC-CEEEEEEEEcChHhCCcCcccCccccccccccCCCCCCcccEEEEc
Confidence 56666677777777654433 22 78999999999999999999999996 32 3678999996
Q ss_pred ----EeeecCC
Q psy14662 122 ----PIYSQDD 128 (237)
Q Consensus 122 ----~~y~~~e 128 (237)
|.|.+|.
T Consensus 109 ~~~~a~Y~~d~ 119 (208)
T 2xip_A 109 GNNLSQYVDDP 119 (208)
T ss_dssp SCTTCEEEECT
T ss_pred CCCceEEeccC
Confidence 8898773
No 7
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A* 3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A* 2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ...
Probab=98.67 E-value=4.6e-09 Score=91.11 Aligned_cols=67 Identities=27% Similarity=0.433 Sum_probs=52.2
Q ss_pred eehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCCceeecCCCC-CC-----CCCCCeeeEE--
Q psy14662 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV-CR-----DPPPLFLRAT-- 121 (237)
Q Consensus 50 tYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~~v~rcP~h~-~~-----~p~~~~iR~~-- 121 (237)
.|-.+-+.+.+++...-+.. +. +.||||+||++.||+.++|+|||+|+ +. .++.|+||++
T Consensus 40 Lf~~m~k~~pv~~~~~~~pp-----------~~-~~iRa~~Vy~~~e~~~~~V~RC~~H~~~~~~~~~~~~~HliR~~gn 107 (200)
T 3d06_A 40 MFCQLAKTCPVQLWVDSTPP-----------PG-TRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQHLIRVEGN 107 (200)
T ss_dssp EEECTTSCEEEEEECSSCCC-----------TT-CEEEEEEEESSGGGTTSCCCCCHHHHC------CCCTTCSEEEESC
T ss_pred eEEccCCcEEEEEEecCCCC-----------CC-CEEEEEEEEcchhhCCcCcccCccccccccCCCCCccceEEEEcCC
Confidence 56666666667776665532 22 78999999999999999999999995 32 3889999996
Q ss_pred --EeeecCC
Q psy14662 122 --PIYSQDD 128 (237)
Q Consensus 122 --~~y~~~e 128 (237)
|.|.+|.
T Consensus 108 ~~a~Y~~d~ 116 (200)
T 3d06_A 108 LRVEYLDDR 116 (200)
T ss_dssp TTCEEEECT
T ss_pred CccEEecCC
Confidence 8998874
No 8
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family, activator, alternative promoter usage, alternative splicing; NMR {Homo sapiens}
Probab=98.57 E-value=8e-09 Score=91.50 Aligned_cols=67 Identities=30% Similarity=0.536 Sum_probs=52.6
Q ss_pred eehhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCCceeecCCCC-CC-------CCCCCeeeEE
Q psy14662 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV-CR-------DPPPLFLRAT 121 (237)
Q Consensus 50 tYS~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~~v~rcP~h~-~~-------~p~~~~iR~~ 121 (237)
.|-.+-+.+.+++...-+.. +. +.||||+||++.||+.|+|+|||+|+ +. +|..|+||++
T Consensus 50 Lf~~m~k~cPv~~~~~~~Pp-----------~g-~~iRa~~Vy~~~e~~~e~V~RC~~H~~~~~~~~~~~~p~~HlIR~e 117 (233)
T 2rmn_A 50 LYCQIAKTCPIQIKVMTPPP-----------QG-AVIRAMPVYKKAEHVTEVVKRCPNHELSREFNEGQIAPPSHLIRVE 117 (233)
T ss_dssp EEECTTCCEEEEEECSSCCC-----------TT-CEEEEEEEESSHHHHTSCCCCCHHHHHSCCCCTTCSSCTTSSEEEE
T ss_pred eeEeccCCeEEEEEecCCCC-----------CC-CEEEEEEEEcChhhCCcCcccCcccccccccccCCCCCcceEEEeC
Confidence 56667777777777654422 22 78999999999999999999999996 32 3679999995
Q ss_pred ----EeeecCC
Q psy14662 122 ----PIYSQDD 128 (237)
Q Consensus 122 ----~~y~~~e 128 (237)
|.|.+|.
T Consensus 118 ~n~~a~Y~~d~ 128 (233)
T 2rmn_A 118 GNSHAQYVEDP 128 (233)
T ss_dssp SCTTCEEEECT
T ss_pred CCCccEEccCC
Confidence 8899874
No 9
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor; DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP: b.2.5.2
Probab=96.56 E-value=0.0091 Score=50.87 Aligned_cols=137 Identities=22% Similarity=0.344 Sum_probs=81.1
Q ss_pred hhhhceeeeeccccccceeEecccCCCCCCCCccceeeccccccccCCCceeecCCCCCCCCCCCeeeEE-EeeecCCCC
Q psy14662 52 SYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDPPPLFLRAT-PIYSQDDHR 130 (237)
Q Consensus 52 S~~LnKLf~~m~k~cPi~~~~~~~~~~~~~p~~~~ram~vyk~~~h~~~~v~rcP~h~~~~p~~~~iR~~-~~y~~~eh~ 130 (237)
+.--+-|+.+|+...||+++|.-.+ +-...+..+|+. .-|...+.+
T Consensus 25 ~~~ekyLW~KM~CnvPi~vkWni~s---------------------------------ch~~k~L~LkiRlVnYd~s~ni 71 (196)
T 1t4w_A 25 SEHEKYLWTKMGCLVPIQVKWKLDK---------------------------------RHFNSNLSLRIRFVKYDKKENV 71 (196)
T ss_dssp TTCCEEEEECTTCCEEEEEEEECCT---------------------------------TTTTCCCEEEEEEEEECSSSCH
T ss_pred eCCcEeehhhccCCceEEEEecCch---------------------------------hhhhcceeEEEEEEecccccch
Confidence 4455679999999999999998721 111456777874 556666554
Q ss_pred C-------CcccCCCCCccccccccccCCCccccCcEEEeCCCceeccCCCCCCceEEeecCCCCCCCCCceeEEEeeEe
Q psy14662 131 G-------RPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVC 203 (237)
Q Consensus 131 ~-------e~V~RCp~H~~~~~~~~~n~g~~a~~~HvIRcen~~A~Y~~d~~t~R~SV~VP~e~Pq~Gse~~Ti~~~FmC 203 (237)
. .-|-.|-+|+..+ ..+|.-.-.-|+....+=+| ....|---+.+-+ +|+-....-+=|||
T Consensus 72 e~aIRnP~sdvaKCr~H~e~E------~~~P~~sFFYi~nSghhw~~--~s~kg~tf~~i~~----PGt~q~~FDlIFmC 139 (196)
T 1t4w_A 72 EYAIRNPRSDVMKCRSHTERE------QHFPFDSFFYIRNSEHEFSY--SAEKGSTFTLIMY----PGAVQANFDIIFMC 139 (196)
T ss_dssp HHHTTCTTCBCCCCHHHHHTC------CSSSTTCSEEEESCSSEEEE--ECTTSSEEEEECC----TTCCEEEEEEEESS
T ss_pred HHHhhCchhHHHHHhhchhhh------ccCCCccEEEEecCCcceee--cCCCCcEEEEEEc----CCceehhHHHHHHH
Confidence 3 3457799996431 12221122333322222222 2122223333333 36655666667999
Q ss_pred cCCCCCCCC-CceeEEEEEEEcCCceEEeEE
Q psy14662 204 KTSCLGGMD-RRPVLLLLTLENQHGQILGRR 233 (237)
Q Consensus 204 ~sSC~GGmN-RRpi~lIfTLE~~~G~VLGRr 233 (237)
+-+|+|--+ |+...|-.-|||..|+-+-..
T Consensus 140 Q~~Cldl~drRK~mCLAvFLeDEngNEilHa 170 (196)
T 1t4w_A 140 QEKCLDLDDRRKTMCLAVFLDDENGNEILHA 170 (196)
T ss_dssp CGGGSCHHHHTSEEEEEEEEECTTSCEEEEE
T ss_pred HHHhcCHHHHHHhHhHHhhhhccccCcHHHH
Confidence 999997444 455678888999988655443
No 10
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=34.71 E-value=26 Score=27.74 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=21.7
Q ss_pred EecCCCCCC---------CCCceeEEEEEEEcCCceEEe
Q psy14662 202 VCKTSCLGG---------MDRRPVLLLLTLENQHGQILG 231 (237)
Q Consensus 202 mC~sSC~GG---------mNRRpi~lIfTLE~~~G~VLG 231 (237)
.|..||.|| .++-.|.++|..++.+|.+|=
T Consensus 11 ~~s~~v~GG~Ev~Llc~kv~K~dikV~F~e~~~~g~~WE 49 (119)
T 1ikn_C 11 RTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVWE 49 (119)
T ss_dssp CSEEETTCCCEEEEEESCCCTTSEEEEEEEECTTSCEEE
T ss_pred CCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCceE
Confidence 344555666 356689999999998887663
No 11
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=29.30 E-value=23 Score=27.53 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=17.7
Q ss_pred EecCCCCCC---------CCCceeEEEEEEEcCCceEE
Q psy14662 202 VCKTSCLGG---------MDRRPVLLLLTLENQHGQIL 230 (237)
Q Consensus 202 mC~sSC~GG---------mNRRpi~lIfTLE~~~G~VL 230 (237)
.|..||.|| .++-.|.++|.-++.+|.+|
T Consensus 11 ~~s~~v~GG~Ev~Llc~kv~K~dikV~F~E~~~~g~~W 48 (106)
T 1u36_A 11 RTAGCVTGGEEIWLLCDKVQKDDIQIRFYEEEENGGVW 48 (106)
T ss_dssp CSEEETTCCCEEEEEESCCCTTSCEEEEEECC----CE
T ss_pred CCccccCCCCEEEEEeccccCCCCEEEEEEeCCCCCce
Confidence 344556666 35668999999998888665
No 12
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=25.59 E-value=53 Score=22.44 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=11.8
Q ss_pred ccCCCceeecCCCC
Q psy14662 96 DHRGRPVERCPLHV 109 (237)
Q Consensus 96 ~h~~~~v~rcP~h~ 109 (237)
-||+-.+++||...
T Consensus 2 ~~ma~~l~~CPFL~ 15 (49)
T 1h7d_A 2 VAAAMLLRSCPVLS 15 (49)
T ss_dssp CCSSCSCCSCCCCS
T ss_pred chHhhhhccCCchh
Confidence 37888999999995
No 13
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=25.08 E-value=24 Score=27.16 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=24.4
Q ss_pred EecCCCCCCCCCceeEEEEEEEcCCc-eEEeEEE
Q psy14662 202 VCKTSCLGGMDRRPVLLLLTLENQHG-QILGRRS 234 (237)
Q Consensus 202 mC~sSC~GGmNRRpi~lIfTLE~~~G-~VLGRr~ 234 (237)
.|.=+..-.+..++..+.|||+|+.| .|-+++-
T Consensus 34 V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W 67 (132)
T 3kdf_D 34 VTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQW 67 (132)
T ss_dssp EEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEE
T ss_pred EEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEE
Confidence 33334444555688999999999999 8988764
No 14
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=22.08 E-value=66 Score=24.76 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=20.4
Q ss_pred CCCCceeEEEEEEEcCCceEEeEEE
Q psy14662 210 GMDRRPVLLLLTLENQHGQILGRRS 234 (237)
Q Consensus 210 GmNRRpi~lIfTLE~~~G~VLGRr~ 234 (237)
.+..++..+.|+|+|+.|.|-++.-
T Consensus 47 ~~~~~~~~~~~~ldD~TG~I~~~~W 71 (136)
T 4gop_B 47 NISRNATNVAYSVEDGTGQIEVRQW 71 (136)
T ss_dssp EEEECSSEEEEEEECSSCEEEEEEE
T ss_pred EEEecCCeEEEEEECCCCCEEEEEe
Confidence 3445788999999999999988764
No 15
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=21.83 E-value=1.9e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=24.0
Q ss_pred eeEEEeeEecCCCCCCCCCceeEEEEEEEcCCceEEeEE
Q psy14662 195 VTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGRR 233 (237)
Q Consensus 195 ~Ti~~~FmC~sSC~GGmNRRpi~lIfTLE~~~G~VLGRr 233 (237)
.|+.+++...+.=..-.+.. .+.++|.|++|+++.+.
T Consensus 17 etV~~~~~~~~~~~~p~~~~--~~~v~l~dp~g~~v~~~ 53 (102)
T 2p9r_A 17 QTVKFRVVSMDENFHPLNEL--IPLVYIQDPKGNRIAQW 53 (102)
T ss_dssp CEEEEEEEEECGGGCBCCCE--EEEEEEECTTSCEEEEE
T ss_pred CEEEEEEEEECCCCcCCCCC--ceEEEEECCCCCEEEEE
Confidence 47788887776432212221 24678899999998874
Done!