RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14662
(237 letters)
>2xip_A Tumour protein P73; phosphoprotein, tumor suppressor,
transcription, metal-bindi nucleus, cell cycle,
transcription regulation; HET: TAM; 1.82A {Homo sapiens}
PDB: 2xwc_A* 4a63_A 3vd0_A* 3vd1_A* 3vd2_A* 3qyn_A
3qym_A 3us0_A 3us1_A 3us2_A
Length = 208
Score = 127 bits (321), Expect = 8e-37
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 40/192 (20%)
Query: 47 SIPQYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCP 106
+ YS L K++ I K PIQ+K+ P PP +RA P+Y + +H V+RCP
Sbjct: 30 ATWTYSPLLKKLYCQIAKTCPIQIKV----STPPPPGTAIRAMPVYKKAEHVTDVVKRCP 85
Query: 107 LHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-S 165
H L + N+G A H++R +
Sbjct: 86 NH-----------------------------------ELGRDFNEGQSAPASHLIRVEGN 110
Query: 166 AHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQ 225
QY D +GR + V P PPQ G + T++Y+F+C +SC+GGM+RRP+L+++TLE +
Sbjct: 111 NLSQYVDDPVTGRQSVVVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIITLEMR 170
Query: 226 HGQILGRRSLSF 237
GQ+LGRRS
Sbjct: 171 DGQVLGRRSFEG 182
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family,
activator, alternative promoter usage, alternative
splicing; NMR {Homo sapiens}
Length = 233
Score = 128 bits (322), Expect = 1e-36
Identities = 63/189 (33%), Positives = 94/189 (49%), Gaps = 40/189 (21%)
Query: 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV 109
YS EL K++ I K PIQ+K+ P P +RA P+Y + +H V+RCP H
Sbjct: 42 TYSTELKKLYCQIAKTCPIQIKV----MTPPPQGAVIRAMPVYKKAEHVTEVVKRCPNH- 96
Query: 110 CRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHC 168
L E N+G A H++R ++H
Sbjct: 97 ----------------------------------ELSREFNEGQIAPPSHLIRVEGNSHA 122
Query: 169 QYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQ 228
QY D +GR + + P PPQ G + T++Y+F+C +SC+GGM+RRP+L+++TLE + GQ
Sbjct: 123 QYVEDPITGRQSVLVPYEPPQVGTEFTTVLYNFMCNSSCVGGMNRRPILIIVTLETRDGQ 182
Query: 229 ILGRRSLSF 237
+LGRR
Sbjct: 183 VLGRRCFEA 191
>3q01_A Cellular tumor antigen P53; beta sandwich, multidomain,
oligomerization, TP53, TUMO suppressor, dimer, DNA
binding, antitumor protein; 2.10A {Homo sapiens} PDB:
3q05_A* 3ts8_A 3q06_A* 1a1u_A
Length = 233
Score = 127 bits (319), Expect = 3e-36
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 42/189 (22%)
Query: 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV 109
YS LNK+F+ + K +P+Q+ + D PP +RA IY Q H V RCP H
Sbjct: 32 TYSPALNKMFVQLAKTVPVQLYV----DSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHE 87
Query: 110 CRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHC 168
+H++R +
Sbjct: 88 RSSDS----------DGLAPP---------------------------QHLIRVEGNLRA 110
Query: 169 QYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQ 228
+Y D + RH+ V P PP+ G+D T+ + F+C +SC+GGM+RRP+L+++TLE+ G
Sbjct: 111 EYLDDPNTFRHSVVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGN 170
Query: 229 ILGRRSLSF 237
+LGR S
Sbjct: 171 LLGRDSFEV 179
>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif,
acetylation, activator, alternative splicing,
anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB:
3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ybg_A 3igl_A*
3kz8_A* 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 3igk_A*
2xwr_A 2fej_A 2h1l_M 1ycs_A 3d09_A ...
Length = 200
Score = 122 bits (308), Expect = 4e-35
Identities = 56/189 (29%), Positives = 83/189 (43%), Gaps = 42/189 (22%)
Query: 50 QYSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHV 109
YS LNK+F + K P+Q+ + D PP +RA IY Q H V RCP H
Sbjct: 32 TYSPALNKMFCQLAKTCPVQLWV----DSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHH- 86
Query: 110 CRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCT-SAHC 168
D G + H++R +
Sbjct: 87 --------------ERCSDSDGLAPPQ----------------------HLIRVEGNLRV 110
Query: 169 QYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQ 228
+Y D + RH+ V P PP+ G+D T+ Y+++C +SC+GGM+R P+L ++TLE+ G
Sbjct: 111 EYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRSPILTIITLEDSSGN 170
Query: 229 ILGRRSLSF 237
+LGR S
Sbjct: 171 LLGRNSFEV 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 3e-04
Identities = 45/272 (16%), Positives = 75/272 (27%), Gaps = 114/272 (41%)
Query: 23 GGDIAQVGTTLAL--ELKQVCDHVFYSIPQYSYELNKVFIDIGKVL------PIQVKLLY 74
GG Q G T EL+ + Y Y + + + L + + ++
Sbjct: 161 GG---Q-GNTDDYFEELRDL-----YQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 75 KH--D--------EPAPPPLFLRATPIYSQDDHRGRPVERCPL-------H---VCR--- 111
+ P +L + PI S CPL H +
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPI-S-----------CPLIGVIQLAHYVVTAKLLG 257
Query: 112 -DPPPLF--LRATPIYSQDDHRGRPVERCPLHVSDALCNEINKG------FEAVVK---- 158
P L L+ +SQ + A+ I + F +V K
Sbjct: 258 FTPGELRSYLKGATGHSQG-------------LVTAVA--IAETDSWESFFVSVRKAITV 302
Query: 159 --HI-VRCTSAHCQYPMDERSGRHTCVTPL---SPPQPGADTVTLMYSFVCKTSCLGGMD 212
I VRC + YP +T + P + + M +
Sbjct: 303 LFFIGVRC---YEAYP-------NTSLPPSILEDSLENNEGVPSPM--LSIS-----NLT 345
Query: 213 RRPVLLLLTLENQH----GQI---L--GRRSL 235
+ V + N H Q+ L G ++L
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Score = 38.1 bits (88), Expect = 0.002
Identities = 37/228 (16%), Positives = 58/228 (25%), Gaps = 84/228 (36%)
Query: 1 MTRSTYRPLRLHRPHENLHRPQGGDIAQVGTTLALELKQVCDHVFYSIPQYSY----ELN 56
M + RPL L H G + +HV +P S+ +L
Sbjct: 1 MDAYSTRPLTLS------H----GSL---------------EHVL-LVPTASFFIASQLQ 34
Query: 57 KVFIDIGKVLPIQVKLLYKHDEP-APPPLFLR-----ATPIYSQDDHRGRPVERCPL-HV 109
+ F K+LP + DEP P L + ++ + + V L
Sbjct: 35 EQFN---KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF 91
Query: 110 CRDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTSAHCQ 169
+L I H A + N K +++
Sbjct: 92 ENC----YLEGNDI----------------HALAAKLLQENDTTLVKTKELIKN------ 125
Query: 170 YPMDERSGRHTCVTPLSPPQPGA-------DTVTLMYSFVCKTSCLGG 210
Y + R P A L+ F GG
Sbjct: 126 Y----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-------GG 162
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.42
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 25/112 (22%)
Query: 38 KQVCDHV-------------FYSIPQYSYELNKVFIDIGKVLPIQVKLLYK--HDEPAPP 82
K+ DH+ F+++ E+ + F+ +VL I K L E P
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQP 105
Query: 83 PLFLRATPIY-SQDD--HRGRPVERCPLHVCRDPPPLFLRATPIYSQDDHRG 131
+ T +Y Q D + V +V R P L LR + +
Sbjct: 106 SM---MTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLR-QALLELRPAKN 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.62
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 64 KVLPIQVKLLYKHDEPAPPPLFLRAT 89
K L +KL Y D + P L ++AT
Sbjct: 23 KKLQASLKL-YADD--SAPALAIKAT 45
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor;
DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP:
b.2.5.2
Length = 196
Score = 27.5 bits (60), Expect = 3.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 190 PGADTVTLMYSFVCKTSCLGGMDRRPVLLLLT-LENQHG 227
PGA F+C+ CL DRR + L L++++G
Sbjct: 126 PGAVQANFDIIFMCQEKCLDLDDRRKTMCLAVFLDDENG 164
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.452
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,677,579
Number of extensions: 213181
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 13
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)