RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14662
         (237 letters)



>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 194

 Score =  134 bits (338), Expect = 6e-40
 Identities = 57/186 (30%), Positives = 84/186 (45%), Gaps = 42/186 (22%)

Query: 51  YSYELNKVFIDIGKVLPIQVKLLYKHDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVC 110
           YS  LNK+F  + K  P+Q+                               V+  P    
Sbjct: 31  YSPALNKMFCQLAKTCPVQLW------------------------------VDSTP---- 56

Query: 111 RDPPPLFLRATPIYSQDDHRGRPVERCPLHVSDALCNEINKGFEAVVKHIVRCTS-AHCQ 169
             PP   +RA  IY Q  H    V RCP H         +    A  +H++R       +
Sbjct: 57  --PPGTRVRAMAIYKQSQHMTEVVRRCPHHER-----CSDSDGLAPPQHLIRVEGNLRVE 109

Query: 170 YPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQI 229
           Y  D  + RH+ V P  PP+ G+D  T+ Y+++C +SC+GGM+RRP+L ++TLE+  G +
Sbjct: 110 YLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCMGGMNRRPILTIITLEDSSGNL 169

Query: 230 LGRRSL 235
           LGR S 
Sbjct: 170 LGRNSF 175


>d2je8a3 b.1.4.1 (A:679-783) Beta-mannosidase, domains 2, 4 and 5
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 105

 Score = 27.8 bits (62), Expect = 0.51
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 191 GADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLENQHGQILGR 232
            A+T   +Y        L   D R   L L L+++ G  +  
Sbjct: 53  PANTSKCVYRAK-LDGWLTPEDCRRSFLKLILKDKSGHQVAE 93


>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
           elegans [TaxId: 6239]}
          Length = 196

 Score = 27.0 bits (59), Expect = 1.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 190 PGADTVTLMYSFVCKTSCLGGMDRRPVLLL-LTLENQHG 227
           PGA        F+C+  CL   DRR  + L + L++++G
Sbjct: 126 PGAVQANFDIIFMCQEKCLDLDDRRKTMCLAVFLDDENG 164


>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 237

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 164 TSAHCQYPMDERSGRHTCVTPLSPPQPGADTVTLMYSFVCKTSCLGGMDRRPVLLLLTLE 223
           T+AHC Y ++           L+  +   DT       +         +    + LL LE
Sbjct: 41  TAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLE 100

Query: 224 NQ 225
             
Sbjct: 101 TT 102


>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 298

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 76  HDEPAPPPLFLRATPIYSQDDHRGRPVERCPLHVCRDP 113
           HD      L L   P  S  D      E+ P+HV  DP
Sbjct: 13  HDPFEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDP 50



 Score = 25.8 bits (55), Expect = 4.6
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 100 RPVERCPLHVCRDPPPLFLRATPIYSQDDHRGRPVERCPLHV 141
           R   R  LH   +   L L   P  S  D      E+ P+HV
Sbjct: 5   RAGVRKALHDPFEDGALVLYEPPAISAHDLIKADKEKLPVHV 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 909,405
Number of extensions: 43564
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.6 bits)