BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14666
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X5N|A Chain A, Crystal Structure Of The Sprpn10 Vwa Domain
Length = 192
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 89/127 (70%), Gaps = 1/127 (0%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSK 59
M NGD++PTR +AQ+D V+++ + K NPEN GL+ + D S +VL+TLT D G+ LS
Sbjct: 15 MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSA 74
Query: 60 LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
+H + GN F GI+IA LALKHR+ K + RI+AFVGSP+ +E+ L +LAKR+KK
Sbjct: 75 MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 134
Query: 120 KVNVDIV 126
V +DI+
Sbjct: 135 NVAIDII 141
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255
T + +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+ + +
Sbjct: 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGD 55
>pdb|4B4T|W Chain W, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 268
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 2 RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKL 60
RNGDF TR +AQ D+V + +K SNPEN VGL++ A + VL+T T++ G+IL+ L
Sbjct: 17 RNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGL 76
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H Q G ++ T ++IA L LKHRQ K RI+AFV SP+ EL +LAK LKK
Sbjct: 77 HDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNN 136
Query: 121 VNVDIVSF 128
V VDI++F
Sbjct: 137 VAVDIINF 144
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 205 TSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
T L +DNS++ RNGDF TR +AQ D+V + +K SNPEN VGL++ A
Sbjct: 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGA 55
>pdb|1TZN|AA Chain a, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|BB Chain b, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|CC Chain c, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|DD Chain d, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|EE Chain e, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|FF Chain f, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|GG Chain g, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|HH Chain h, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|II Chain i, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|JJ Chain j, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|KK Chain k, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|LL Chain l, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|MM Chain m, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
pdb|1TZN|OO Chain o, Crystal Structure Of The Anthrax Toxin Protective Antigen
Heptameric Prepore Bound To The Vwa Domain Of Cmg2, An
Anthrax Toxin Receptor
Length = 181
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 29 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 85
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 38 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 97
Query: 86 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 128
G IIA +D E+E K+++ L V ++ F
Sbjct: 98 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 144
>pdb|1SHU|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of
Human Capillary Morphogenesis Protein 2: An Anthrax
Toxin Receptor
Length = 182
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 29 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 85
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 39 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 98
Query: 86 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 128
G IIA +D E+E K+++ L V ++ F
Sbjct: 99 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 145
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 68 NINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIV 126
NIN I ++ Q KN ++RI A +G ++R L+ L LKK V DI+
Sbjct: 184 NINKYDNSDIRDCFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDII 242
>pdb|1SHT|X Chain X, Crystal Structure Of The Von Willebrand Factor A Domain Of
Human Capillary Morphogenesis Protein 2: An Anthrax
Toxin Receptor
Length = 181
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 29 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 85
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 39 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 98
Query: 86 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 128
G IIA +D E+E K+++ L V ++ F
Sbjct: 99 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 145
>pdb|1T6B|Y Chain Y, Crystal Structure Of B. Anthracis Protective Antigen
Complexed With Human Anthrax Toxin Receptor
Length = 189
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 29 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 85
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 46 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 105
Query: 86 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 128
G IIA +D E+E K+++ L V ++ F
Sbjct: 106 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 152
>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With
10z-Hymenialdisine
Length = 339
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 169 CETNTSILTPLGSIPPPDLTSLVRC-------PHVSHVVAMITTSLNVDNSDFMRNGDFL 221
CE S + L + D S RC H H+ ++ L + DF++ FL
Sbjct: 55 CEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI-CIVFELLGLSTYDFIKENGFL 113
Query: 222 PTRLQAQQDAVNLVCHS 238
P RL + +C S
Sbjct: 114 PFRLDHIRKMAYQICKS 130
>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In
Complex With A Novel Substituted Indole Inhibitor
Length = 339
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 169 CETNTSILTPLGSIPPPDLTSLVRC-------PHVSHVVAMITTSLNVDNSDFMRNGDFL 221
CE S + L + D S RC H H+ ++ L + DF++ FL
Sbjct: 55 CEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI-CIVFELLGLSTYDFIKENGFL 113
Query: 222 PTRLQAQQDAVNLVCHS 238
P RL + +C S
Sbjct: 114 PFRLDHIRKMAYQICKS 130
>pdb|1D1R|A Chain A, Nmr Solution Structure Of The Product Of The E. Coli Ycih
Gene
Length = 116
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 39 MADSVEVLATLTSDVGRILS-KLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAF 97
M+DS L +++ GRI K V+P G+ +RI RQ K + +
Sbjct: 1 MSDSNSRL-VYSTETGRIDEPKAAPVRPKGDGV----VRI------QRQTSGRKGKGVCL 49
Query: 98 VGSPVDLEERELTKLAKRLKKE 119
+ + VDL++ ELTKLA LKK+
Sbjct: 50 I-TGVDLDDAELTKLAAELKKK 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,444,384
Number of Sequences: 62578
Number of extensions: 227800
Number of successful extensions: 691
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 13
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)