BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14666
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55036|PSMD4_HUMAN 26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens
GN=PSMD4 PE=1 SV=1
Length = 377
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 117/132 (88%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+ EVL TLT D GRILSKL
Sbjct: 16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+ E++L KLAKRLKKEK
Sbjct: 76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135
Query: 121 VNVDIVSFGEER 132
VNVDI++FGEE
Sbjct: 136 VNVDIINFGEEE 147
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 48/51 (94%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
+T + VDNS++MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A
Sbjct: 5 STMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA 55
>sp|Q58DA0|PSMD4_BOVIN 26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus
GN=PSMD4 PE=2 SV=1
Length = 382
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 117/132 (88%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+ EVL TLT D GRILSKL
Sbjct: 16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+ E++L KLAKRLKKEK
Sbjct: 76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135
Query: 121 VNVDIVSFGEER 132
VNVDI++FGEE
Sbjct: 136 VNVDIINFGEEE 147
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 48/51 (94%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
+T + VDNS++MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A
Sbjct: 5 STMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA 55
>sp|O35226|PSMD4_MOUSE 26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus
GN=Psmd4 PE=1 SV=1
Length = 376
Score = 228 bits (582), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 117/132 (88%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A+ EVL TLT D GRILSKL
Sbjct: 16 MRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEVLTTLTPDTGRILSKL 75
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H VQP G I F TGIR+AHLALKHRQGKNHKMRIIAFVGSPV+ E++L KLAKRLKKEK
Sbjct: 76 HTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEK 135
Query: 121 VNVDIVSFGEER 132
VNVDI++FGEE
Sbjct: 136 VNVDIINFGEEE 147
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 48/51 (94%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
+T + VDNS++MRNGDFLPTRLQAQQDAVN+VCHSKTRSNPENNVGL+ +A
Sbjct: 5 STMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA 55
>sp|A2A3N6|PIPSL_HUMAN Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL
PE=5 SV=1
Length = 862
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 109/131 (83%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
M NGDFLPTRLQAQQDAVN VCHSKTRSNPENNVGL+ + + EVL TLT D GRILSKL
Sbjct: 501 MGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITLDNDCEVLTTLTPDTGRILSKL 560
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H VQP G I F GI +AHLALKHRQG NHK+RIIAFVG+PV+ E+ L KLAK LKKEK
Sbjct: 561 HTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEK 620
Query: 121 VNVDIVSFGEE 131
VNVDI++FGEE
Sbjct: 621 VNVDIINFGEE 631
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 54/71 (76%), Gaps = 5/71 (7%)
Query: 183 PPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRS 242
P PD + P V + M+TTS VDNS++M NGDFLPTRLQAQQDAVN VCHSKTRS
Sbjct: 474 PTPDPS---FSPLVEETLQMLTTS--VDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRS 528
Query: 243 NPENNVGLLAM 253
NPENNVGL+ +
Sbjct: 529 NPENNVGLITL 539
>sp|P55035|PSMD4_DROME 26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila
melanogaster GN=Pros54 PE=1 SV=2
Length = 396
Score = 204 bits (518), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 94/129 (72%), Positives = 110/129 (85%)
Query: 2 RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLH 61
RNGD+ PTRL Q+D +NLVC +K RSNPENNVGL+ ++++VEVLATLTSD GRI SK+H
Sbjct: 17 RNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNTVEVLATLTSDAGRIFSKMH 76
Query: 62 QVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKV 121
VQP G IN +TGIRIAHL LKHRQGKNHKMRI+ FVGSP++ EE +L K AKRLKKEKV
Sbjct: 77 LVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKV 136
Query: 122 NVDIVSFGE 130
NVDIVSFG+
Sbjct: 137 NVDIVSFGD 145
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
+T + DNSDF RNGD+ PTRL Q+D +NLVC +K RSNPENNVGL+ ++
Sbjct: 5 STMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLS 55
>sp|O17453|PSMD4_SCHMA 26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma
mansoni PE=2 SV=2
Length = 420
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/130 (64%), Positives = 108/130 (83%), Gaps = 1/130 (0%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKL 60
MRNGDF PTRLQAQ DAV L+C SK + NPEN +GLL++A++ EVL TLT+DV +I ++L
Sbjct: 16 MRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLANT-EVLCTLTNDVSKIYNRL 74
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H V+P G I F + IRIAHLAL+HRQ ++ KMRI+ F+GSP+ +E+ELT+LAKRLKKEK
Sbjct: 75 HLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEK 134
Query: 121 VNVDIVSFGE 130
VNVDI++FGE
Sbjct: 135 VNVDIINFGE 144
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 41/50 (82%)
Query: 205 TSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
T + VDNSD+MRNGDF PTRLQAQ DAV L+C SK + NPEN +GLL++A
Sbjct: 6 TIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA 55
>sp|P55034|PSMD4_ARATH 26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis
thaliana GN=MBP1 PE=1 SV=1
Length = 386
Score = 156 bits (394), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/139 (55%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVEVLATLTSDVGRILSK 59
MRNGD+ P+RLQAQ +AVNL+C +KT+SNPEN VG+L MA V VL T TSD+G+IL+
Sbjct: 16 MRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILAC 75
Query: 60 LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
+H + G IN I+IA LALKHRQ KN + RII F GSP+ E++ L + KRLKK
Sbjct: 76 MHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKN 135
Query: 120 KVNVDIVSFGEEREGGKGQ 138
V++DIV+FGE+ + K Q
Sbjct: 136 SVSLDIVNFGEDDDEEKPQ 154
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 44/53 (83%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256
T + +DNS++MRNGD+ P+RLQAQ +AVNL+C +KT+SNPEN VG+L MA K
Sbjct: 5 ATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGK 57
>sp|Q553E0|PSMD4_DICDI 26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium
discoideum GN=psmD4 PE=2 SV=1
Length = 349
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/151 (50%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVEVLATLTSDVGRILSK 59
MRNGDF P+R +AQ+DAVNL+C SKT+SNPE+ V +++MA EVL TLT ++ +ILS
Sbjct: 16 MRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSG 75
Query: 60 LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
+++ NG I+F T ++IA LAL+HRQ + RIIAFVGSP+ + EL +LAKRLKK
Sbjct: 76 AQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKN 135
Query: 120 KVNVDIVSFGEEREGGKGQDEEEEEVQNTDR 150
V VDI++FGE E + +V N D
Sbjct: 136 GVAVDIINFGEVTENSDKLEAFINDVNNNDE 166
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 42/48 (87%)
Query: 209 VDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256
+DNS++MRNGDF P+R +AQ+DAVNL+C SKT+SNPE+ V +++MA K
Sbjct: 10 LDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGK 57
>sp|O94444|RPN10_SCHPO 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1
Length = 243
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSK 59
M NGD++PTR +AQ+D V+++ + K NPEN GL+ + D S +VL+TLT D G+ LS
Sbjct: 16 MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSA 75
Query: 60 LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
+H + GN F GI+IA LALKHR+ K + RI+AFVGSP+ +E+ L +LAKR+KK
Sbjct: 76 MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 135
Query: 120 KVNVDIVSFGE 130
V +DI+ GE
Sbjct: 136 NVAIDIIHIGE 146
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 204 TTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255
T + +DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+ + +
Sbjct: 5 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGD 56
>sp|P38886|RPN10_YEAST 26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN10 PE=1 SV=3
Length = 268
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 2 RNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKL 60
RNGDF TR +AQ D+V + +K SNPEN VGL++ A + VL+T T++ G+IL+ L
Sbjct: 17 RNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGL 76
Query: 61 HQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEK 120
H Q G ++ T ++IA L LKHRQ K RI+AFV SP+ EL +LAK LKK
Sbjct: 77 HDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNN 136
Query: 121 VNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCH 154
V VDI++FGE + + DE V N H
Sbjct: 137 VAVDIINFGEIEQNTELLDEFIAAVNNPQEETSH 170
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 35/50 (70%)
Query: 205 TSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
T L +DNS++ RNGDF TR +AQ D+V + +K SNPEN VGL++ A
Sbjct: 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGA 55
>sp|Q98902|L1CAM_TAKRU Neural cell adhesion molecule L1 OS=Takifugu rubripes GN=l1cam PE=3
SV=1
Length = 1277
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 137 GQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSA-CETNTSILTPLGSIPPPDLTSLVRCPH 195
G +EE++ + N RP CHY+L +S K TS +TP G +P P ++ + P
Sbjct: 888 GANEEKKSITNL-RPYCHYDLAISAFNSKGEGPLSEKTSFMTPEG-VPGPPMSMQMTSPS 945
Query: 196 VSHVVAMIT 204
S + T
Sbjct: 946 ESEITLHWT 954
>sp|Q8JZM7|CDC73_MOUSE Parafibromin OS=Mus musculus GN=Cdc73 PE=2 SV=1
Length = 531
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 128 FGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPL-----GSI 182
+ +ER GK EE E D ++ +TL + E +SA +T T P+ +
Sbjct: 293 YDQERFKGK----EETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQAR 348
Query: 183 PPPDLTSLVRCPHVSHVVAMITTSL--NVDNSDFMRNGDFLPTRLQAQQ 229
PPP+ R P + ++ TTSL ++ D +++ F+P+ + +Q
Sbjct: 349 PPPNQKKGSRTPII--IIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQ 395
>sp|Q6P1J9|CDC73_HUMAN Parafibromin OS=Homo sapiens GN=CDC73 PE=1 SV=1
Length = 531
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 128 FGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPL-----GSI 182
+ +ER GK EE E D ++ +TL + E +SA +T T P+ +
Sbjct: 293 YDQERFKGK----EETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQAR 348
Query: 183 PPPDLTSLVRCPHVSHVVAMITTSL--NVDNSDFMRNGDFLPTRLQAQQ 229
PPP+ R P + ++ TTSL ++ D +++ F+P+ + +Q
Sbjct: 349 PPPNQKKGSRTPII--IIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQ 395
>sp|Q4V8C8|CDC73_RAT Parafibromin OS=Rattus norvegicus GN=Cdc73 PE=2 SV=1
Length = 531
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 128 FGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPL-----GSI 182
+ +ER GK EE E D ++ +TL + E +SA +T T P+ +
Sbjct: 293 YDQERFKGK----EETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQAR 348
Query: 183 PPPDLTSLVRCPHVSHVVAMITTSL--NVDNSDFMRNGDFLPTRLQAQQ 229
PPP+ R P + ++ TTSL ++ D +++ F+P+ + +Q
Sbjct: 349 PPPNQKKGSRTPII--IIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQ 395
>sp|Q5ZLM0|CDC73_CHICK Parafibromin OS=Gallus gallus GN=CDC73 PE=2 SV=1
Length = 531
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 128 FGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPL-----GSI 182
+ +ER GK EE E D ++ +TL + E +SA +T T P+ +
Sbjct: 293 YDQERFKGK----EETEGFKIDTMGTYHGMTLKSVTEGASARKTQTPAAQPVPRPVSQAR 348
Query: 183 PPPDLTSLVRCPHVSHVVAMITTSL--NVDNSDFMRNGDFLPTRLQAQQ 229
PPP+ R P + ++ TTSL ++ D +++ F+P+ + +Q
Sbjct: 349 PPPNQKKGSRTPII--IIPAATTSLITMLNAKDLLQDLKFVPSDEKKKQ 395
>sp|Q5RFR7|INMT_PONAB Indolethylamine N-methyltransferase OS=Pongo abelii GN=INMT PE=2
SV=1
Length = 263
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 103 DLEERELTKLAKRLKKEKVNVD---IVSFGEEREGGKGQDEEEEE 144
D +R +L K LKKE D +V F E EG GQ EE+EE
Sbjct: 85 DFTDRNREELEKWLKKEPGAYDWTPVVKFACELEGNSGQWEEKEE 129
>sp|P58335|ANTR2_HUMAN Anthrax toxin receptor 2 OS=Homo sapiens GN=ANTXR2 PE=1 SV=5
Length = 489
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Query: 29 NPENNVGLLAMADSVEVLATLTSDVGRI---LSKLHQVQPNGNINFMTGIRIAHLALKHR 85
+PE + + + ++ LT D G+I L L +V P G G+++A+ ++
Sbjct: 75 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 134
Query: 86 QGKNHKMRIIAFVGSPVD-----LEERELTKLAKRLKKEKVNVDIVSF 128
G IIA +D E+E K+++ L V ++ F
Sbjct: 135 GGLKTSSIIIALTDGKLDGLVPSYAEKE-AKISRSLGASVYCVGVLDF 181
>sp|P30427|PLEC_RAT Plectin OS=Rattus norvegicus GN=Plec PE=1 SV=2
Length = 4687
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 36 LLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQG-----KNH 90
+LA+ + TL S++ L KL QV+ I ++ ++ L ++ QG K H
Sbjct: 1190 VLALPEPSPAAPTLRSELELTLGKLEQVRSLSAI-YLEKLKTISLVIRSTQGAEEVLKTH 1248
Query: 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQ 146
+ + P L+E E+TK + + + + F R+ +G E E +Q
Sbjct: 1249 EEHLKEAQAVPATLQELEVTKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQ 1304
>sp|P52878|SERC_METBF Phosphoserine aminotransferase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=serC PE=1 SV=1
Length = 370
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 84 HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGK---GQDE 140
H + ++R V VDL + +L +L K L+KEKV DI S+ + G + G
Sbjct: 291 HFLAETKEIRSSTSVCFKVDLSDEKLKELIKTLEKEKVAYDIGSYRDAPSGLRIWCGATV 350
Query: 141 EEEEVQ 146
E+E++Q
Sbjct: 351 EKEDLQ 356
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2
Length = 4691
Score = 30.8 bits (68), Expect = 9.8, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 36 LLAMADSVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALKHRQG-----KNH 90
+LA+ + TL S++ L KL QV+ I ++ ++ L ++ QG K H
Sbjct: 1195 VLALPEPSPAAPTLRSELELTLGKLEQVRSLSAI-YLEKLKTISLVIRSTQGAEEVLKTH 1253
Query: 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQ 146
+ ++ P L+E E TK + + + + F R+ +G E E +Q
Sbjct: 1254 EEQLKEAQAVPATLQELEATKASLKKLRAQAEAQQPVFNTLRDELRGAQEVGERLQ 1309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,761,951
Number of Sequences: 539616
Number of extensions: 3871842
Number of successful extensions: 11203
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 11147
Number of HSP's gapped (non-prelim): 84
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)