Query psy14666
Match_columns 256
No_of_seqs 163 out of 391
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_W RPN10, 26S proteasome r 100.0 1.6E-34 5.5E-39 262.3 18.1 155 1-155 16-171 (268)
2 2x5n_A SPRPN10, 26S proteasome 100.0 2.1E-29 7.2E-34 217.1 18.4 152 1-155 15-167 (192)
3 3ibs_A Conserved hypothetical 99.6 3.1E-15 1E-19 126.6 14.5 123 1-131 24-150 (218)
4 1jey_B KU80; double-strand DNA 99.5 1.7E-13 5.9E-18 134.5 12.8 131 1-131 20-170 (565)
5 1q0p_A Complement factor B; VO 99.4 8.7E-12 3E-16 105.2 13.6 162 4-176 26-216 (223)
6 1shu_X Anthrax toxin receptor 99.3 6.2E-12 2.1E-16 103.1 9.5 147 15-175 27-177 (182)
7 2xgg_A Microneme protein 2; A/ 99.3 3.9E-11 1.3E-15 99.5 13.9 127 4-133 28-164 (178)
8 1ijb_A VON willebrand factor; 99.3 1.7E-10 5.7E-15 97.7 15.4 136 4-142 24-167 (202)
9 1atz_A VON willebrand factor; 99.2 1.5E-10 5.2E-15 96.3 14.6 133 4-142 16-156 (189)
10 4fx5_A VON willebrand factor t 99.2 8.9E-11 3.1E-15 113.0 14.7 147 8-173 94-251 (464)
11 1n3y_A Integrin alpha-X; alpha 99.2 1.8E-11 6E-16 101.9 7.9 157 6-174 22-188 (198)
12 2b2x_A Integrin alpha-1; compu 99.2 2.4E-10 8.1E-15 97.8 15.1 153 11-175 38-207 (223)
13 1mf7_A Integrin alpha M; cell 99.2 1.6E-11 5.5E-16 102.4 7.1 157 4-173 16-183 (194)
14 4hqo_A Sporozoite surface prot 99.2 3.9E-10 1.3E-14 99.8 14.1 129 4-133 29-167 (266)
15 3n2n_F Anthrax toxin receptor 99.2 1.2E-10 4.2E-15 95.5 9.9 128 11-142 24-157 (185)
16 1rrk_A Complement factor B; BB 99.2 1.7E-10 5.9E-15 109.0 11.9 160 5-175 13-201 (497)
17 2x31_A Magnesium-chelatase 60 99.1 2.7E-12 9.2E-17 106.5 -1.3 135 4-140 16-162 (189)
18 1jey_A KU70; double-strand DNA 99.1 7.3E-10 2.5E-14 109.9 14.1 132 1-132 48-209 (609)
19 1v7p_C Integrin alpha-2; snake 99.1 2.7E-09 9.4E-14 89.5 15.6 117 11-130 22-147 (200)
20 1pt6_A Integrin alpha-1; cell 99.1 1.4E-09 4.8E-14 92.2 13.4 152 11-174 23-191 (213)
21 4hqf_A Thrombospondin-related 99.1 2.1E-09 7.3E-14 95.4 14.3 128 4-132 32-169 (281)
22 2odp_A Complement C2; C3/C5 co 99.0 1.9E-09 6.4E-14 102.5 10.3 162 5-176 21-210 (509)
23 3hrz_D Complement factor B; se 98.9 4.5E-09 1.6E-13 104.0 11.3 129 4-132 254-409 (741)
24 3zqk_A VON willebrand factor; 98.7 8.5E-08 2.9E-12 80.7 10.0 128 4-142 32-168 (199)
25 3k6s_A Integrin alpha-X; cell 98.6 5.4E-08 1.8E-12 102.5 8.7 126 4-131 141-272 (1095)
26 1mjn_A Integrin alpha-L; rossm 98.6 2.4E-07 8.2E-12 76.7 9.6 118 4-133 13-139 (179)
27 3rag_A Uncharacterized protein 98.1 2.1E-06 7.1E-11 76.8 5.4 139 90-256 9-182 (242)
28 2nut_A Protein transport prote 97.8 0.00013 4.4E-09 74.4 11.4 120 9-132 146-358 (769)
29 1yvr_A RO autoantigen, 60-kDa 97.7 5E-05 1.7E-09 73.9 6.8 119 1-133 381-506 (538)
30 1jey_B KU80; double-strand DNA 97.7 2.2E-05 7.4E-10 77.0 3.8 54 203-256 8-62 (565)
31 2ww8_A RRGA, cell WALL surface 97.4 0.00032 1.1E-08 72.7 9.3 93 9-102 246-390 (893)
32 1pcx_A Protein transport prote 97.2 0.0023 7.9E-08 65.6 11.8 117 11-132 206-390 (810)
33 1m2v_B SEC24, protein transpor 97.0 0.006 2E-07 63.5 12.7 117 11-132 322-506 (926)
34 1m2o_A SEC23, protein transpor 96.9 0.014 4.8E-07 59.4 14.1 100 66-177 257-389 (768)
35 3rag_A Uncharacterized protein 96.8 0.0025 8.6E-08 56.8 6.9 74 9-83 149-226 (242)
36 3eh2_A Protein transport prote 96.7 0.0047 1.6E-07 62.9 9.2 103 65-177 285-416 (766)
37 2nvo_A RO sixty-related protei 96.5 0.015 5.2E-07 56.5 11.3 112 7-132 385-501 (535)
38 3eh1_A Protein transport prote 96.4 0.032 1.1E-06 56.8 13.2 61 67-132 269-354 (751)
39 3efo_B SEC24 related gene fami 96.3 0.0071 2.4E-07 61.7 7.5 102 65-176 289-419 (770)
40 2iue_A Pactolus I-domain; memb 95.4 0.16 5.6E-06 44.1 11.4 127 11-141 20-185 (212)
41 1jey_A KU70; double-strand DNA 94.4 0.026 8.9E-07 55.8 3.9 54 203-256 36-91 (609)
42 3ibs_A Conserved hypothetical 93.3 0.1 3.5E-06 43.1 5.0 50 203-256 12-61 (218)
43 3fcs_B Integrin beta-3; beta p 93.0 0.88 3E-05 45.9 12.3 125 15-142 132-325 (690)
44 3k6s_B Integrin beta-2; cell r 91.0 0.17 5.8E-06 51.0 4.4 121 18-142 128-315 (687)
45 3vi3_B Integrin beta-1; beta p 78.7 27 0.00091 33.6 12.6 125 14-142 142-332 (454)
46 3t3p_B Integrin beta-3; integr 76.1 11 0.00038 36.4 9.2 125 14-141 131-324 (472)
47 1ijb_A VON willebrand factor; 69.4 8.9 0.0003 31.3 6.0 48 203-255 14-61 (202)
48 2xgg_A Microneme protein 2; A/ 64.8 5.8 0.0002 31.6 3.9 49 203-256 18-66 (178)
49 2ki0_A DS119; beta-alpha-beta, 62.3 3.7 0.00013 25.5 1.6 21 105-125 13-33 (36)
50 3v4v_B Integrin beta-7; cell a 61.8 66 0.0023 31.3 11.2 126 12-141 150-343 (503)
51 2b2x_A Integrin alpha-1; compu 61.1 11 0.00037 31.1 5.0 47 203-256 23-69 (223)
52 1q0p_A Complement factor B; VO 58.0 4.8 0.00016 32.7 2.2 48 203-255 16-63 (223)
53 2ww8_A RRGA, cell WALL surface 52.4 5.5 0.00019 41.2 2.0 53 202-255 224-277 (893)
54 2lnd_A De novo designed protei 49.2 45 0.0016 25.1 6.1 53 90-145 50-102 (112)
55 3zqk_A VON willebrand factor; 45.1 21 0.00071 28.9 4.1 49 203-256 22-70 (199)
56 3fni_A Putative diflavin flavo 42.8 42 0.0014 26.6 5.5 41 91-131 4-44 (159)
57 2amj_A Modulator of drug activ 40.2 29 0.001 28.7 4.3 52 89-140 10-67 (204)
58 4fx5_A VON willebrand factor t 39.9 24 0.0008 33.4 4.1 48 203-256 78-125 (464)
59 1y7p_A Hypothetical protein AF 39.7 57 0.002 28.4 6.2 36 90-128 144-179 (223)
60 3d3k_A Enhancer of mRNA-decapp 38.8 52 0.0018 28.7 5.9 38 92-131 86-123 (259)
61 3f6r_A Flavodoxin; FMN binding 38.4 35 0.0012 25.9 4.3 39 93-131 3-41 (148)
62 3k1y_A Oxidoreductase; structu 38.0 52 0.0018 27.2 5.5 45 88-132 8-60 (191)
63 3d3j_A Enhancer of mRNA-decapp 38.0 49 0.0017 29.7 5.8 39 91-131 132-170 (306)
64 2a5l_A Trp repressor binding p 37.3 37 0.0013 27.0 4.4 39 93-131 7-45 (200)
65 1f4p_A Flavodoxin; electron tr 36.9 37 0.0013 25.7 4.2 38 93-130 2-39 (147)
66 1jzt_A Hypothetical 27.5 kDa p 36.0 70 0.0024 27.6 6.3 38 92-131 59-96 (246)
67 1ydg_A Trp repressor binding p 35.8 45 0.0015 27.0 4.7 40 92-131 7-46 (211)
68 3hly_A Flavodoxin-like domain; 34.9 44 0.0015 26.3 4.5 38 93-130 2-39 (161)
69 4hqf_A Thrombospondin-related 33.3 39 0.0013 28.9 4.1 47 204-255 23-70 (281)
70 2o8n_A APOA-I binding protein; 33.2 83 0.0028 27.7 6.3 37 92-130 80-116 (265)
71 3tem_A Ribosyldihydronicotinam 31.7 64 0.0022 27.2 5.2 42 91-132 1-44 (228)
72 4ds3_A Phosphoribosylglycinami 31.3 58 0.002 27.6 4.8 14 114-127 51-64 (209)
73 3b6i_A Flavoprotein WRBA; flav 31.1 58 0.002 25.7 4.6 39 93-131 3-42 (198)
74 3u7r_A NADPH-dependent FMN red 30.9 45 0.0016 27.6 4.0 58 92-149 3-69 (190)
75 2kln_A Probable sulphate-trans 30.4 99 0.0034 23.1 5.7 69 64-132 20-92 (130)
76 2lta_A De novo designed protei 34.9 12 0.00041 28.2 0.0 33 92-128 3-35 (110)
77 3c1m_A Probable aspartokinase; 28.5 1E+02 0.0034 29.1 6.4 39 93-131 405-443 (473)
78 3qhp_A Type 1 capsular polysac 28.2 41 0.0014 25.3 3.1 39 93-131 3-43 (166)
79 3ced_A Methionine import ATP-b 28.1 64 0.0022 23.8 4.0 25 105-129 74-98 (98)
80 2ark_A Flavodoxin; FMN, struct 26.5 71 0.0024 25.5 4.4 40 92-131 5-45 (188)
81 1mf7_A Integrin alpha M; cell 26.2 1.4E+02 0.0047 23.4 6.1 48 91-138 5-59 (194)
82 3ugs_B Undecaprenyl pyrophosph 25.0 61 0.0021 28.2 3.8 36 114-149 87-124 (225)
83 1l1s_A Hypothetical protein MT 24.3 84 0.0029 23.1 4.2 56 70-129 17-75 (113)
84 1mjn_A Integrin alpha-L; rossm 23.8 1.3E+02 0.0045 23.5 5.5 49 92-140 3-58 (179)
85 5nul_A Flavodoxin; electron tr 23.5 55 0.0019 24.5 3.0 37 95-131 2-38 (138)
86 2q62_A ARSH; alpha/beta, flavo 23.0 1E+02 0.0035 26.4 5.0 42 90-131 33-76 (247)
87 3tvi_A Aspartokinase; structur 22.9 1.4E+02 0.0047 28.1 6.2 41 91-131 373-413 (446)
88 2vzf_A NADH-dependent FMN redu 22.8 97 0.0033 24.9 4.5 40 92-131 3-45 (197)
89 3sho_A Transcriptional regulat 22.8 47 0.0016 26.3 2.5 37 105-142 25-61 (187)
90 2zki_A 199AA long hypothetical 22.6 94 0.0032 24.6 4.4 38 92-131 5-43 (199)
91 2fz5_A Flavodoxin; alpha/beta 22.3 94 0.0032 22.8 4.1 37 94-130 2-38 (137)
92 3trh_A Phosphoribosylaminoimid 22.1 2.1E+02 0.0071 23.8 6.4 48 93-143 8-55 (169)
93 3fzy_A RTX toxin RTXA; RTXA to 21.8 2.4E+02 0.0082 24.6 7.0 47 89-135 155-203 (234)
94 2f5t_X Archaeal transcriptiona 21.7 2.4E+02 0.0082 24.1 7.1 54 70-131 7-60 (233)
95 3rg8_A Phosphoribosylaminoimid 21.6 2.6E+02 0.009 22.9 6.9 76 93-179 4-83 (159)
96 1yvr_A RO autoantigen, 60-kDa 21.6 38 0.0013 32.3 2.0 49 203-255 369-417 (538)
97 3dhx_A Methionine import ATP-b 21.5 1.7E+02 0.0059 21.6 5.4 27 105-131 74-100 (106)
98 2hna_A Protein MIOC, flavodoxi 21.4 1.2E+02 0.004 23.0 4.6 35 93-127 3-37 (147)
99 3kuu_A Phosphoribosylaminoimid 21.3 2.1E+02 0.0072 23.9 6.3 81 91-179 12-92 (174)
100 2dt9_A Aspartokinase; protein- 21.2 89 0.0031 24.8 4.0 37 93-129 96-132 (167)
101 3hr4_A Nitric oxide synthase, 21.2 1E+02 0.0035 26.3 4.5 55 72-130 23-78 (219)
102 3dhf_A Nicotinamide phosphorib 21.0 50 0.0017 31.8 2.7 41 92-135 347-387 (484)
103 2f9f_A First mannosyl transfer 21.0 76 0.0026 24.5 3.4 127 90-238 21-162 (177)
104 2pd2_A Hypothetical protein ST 21.0 1.2E+02 0.0041 21.9 4.4 56 70-129 12-70 (108)
105 2fzv_A Putative arsenical resi 20.9 1.1E+02 0.0038 27.0 4.9 42 90-131 57-100 (279)
106 1t5b_A Acyl carrier protein ph 20.7 1.1E+02 0.0039 24.0 4.5 40 92-131 2-46 (201)
107 3ju3_A Probable 2-oxoacid ferr 20.4 1.1E+02 0.0039 23.0 4.3 39 91-132 13-51 (118)
108 1pt6_A Integrin alpha-1; cell 20.4 2.2E+02 0.0076 22.6 6.3 45 91-135 7-58 (213)
109 4grd_A N5-CAIR mutase, phospho 20.3 2.5E+02 0.0087 23.4 6.6 80 92-179 13-92 (173)
110 4hqo_A Sporozoite surface prot 20.2 81 0.0028 26.7 3.7 48 204-256 20-68 (266)
111 3c8f_A Pyruvate formate-lyase 20.2 1.2E+02 0.0043 24.2 4.7 50 93-142 71-120 (245)
No 1
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=262.32 Aligned_cols=155 Identities=45% Similarity=0.664 Sum_probs=147.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCc-ceEEEcCCCCHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy14666 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAH 79 (256)
Q Consensus 1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~-a~vl~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~ 79 (256)
|+++||.||||+++++|++.|++.++++||+++||||+|++. +.++.+||+|..+++.+|++++++|.+++++||++|.
T Consensus 16 M~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~~~il~aL~~l~~~G~T~l~~gL~~A~ 95 (268)
T 4b4t_W 16 SRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQ 95 (268)
T ss_dssp TSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHH
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchHHHHHHHhhhcCcCCCCChHHHHHHHH
Confidence 899999999999999999999999999999999999999985 7899999999999999999999999999999999999
Q ss_pred HHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccc
Q psy14666 80 LALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHY 155 (256)
Q Consensus 80 ~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~ 155 (256)
.+|+|++++.+++|||||++|+.+++++++.++++++||+||+|+||+||.+.+..++|.++.+++|++++++|||
T Consensus 96 ~aLk~~~~k~~~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~ 171 (268)
T 4b4t_W 96 LTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHL 171 (268)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEE
T ss_pred HHHHhcccCCCceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999765544443
No 2
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.1e-29 Score=217.14 Aligned_cols=152 Identities=45% Similarity=0.767 Sum_probs=139.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecC-cceEEEcCCCCHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy14666 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAH 79 (256)
Q Consensus 1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~-~a~vl~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~ 79 (256)
|+++|+.||||++++++++.|+.+|+++||+++||||+|++ .+.+++|||.|+..+..+|+.+.++|.+++++||++|.
T Consensus 15 M~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~~~i~~~L~~l~~~g~t~l~~aL~~A~ 94 (192)
T 2x5n_A 15 MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQ 94 (192)
T ss_dssp GGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCHHHHHHHHTTCCCCSCCCHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCHHHHHHHHHcCCCCCCchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999 59999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccc
Q psy14666 80 LALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHY 155 (256)
Q Consensus 80 ~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~ 155 (256)
..|++.+++.+++|||||++++.++|++++.++++.+|+++|+|++|+||++.+..+ |..+.+++++++ +|||
T Consensus 95 ~~l~~~~~~~~~~riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~--~s~~ 167 (192)
T 2x5n_A 95 LALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAANSSD--SCHL 167 (192)
T ss_dssp HHHHTCSCTTSEEEEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHCSTT--CCEE
T ss_pred HHHHhccccCCCceEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhccCCC--ceEE
Confidence 999999877788899999988887789999999999999999999999999998877 999999998744 4555
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=3.1e-15 Score=126.57 Aligned_cols=123 Identities=17% Similarity=0.228 Sum_probs=107.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhcccCC----CCcccHHHHHH
Q psy14666 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQP----NGNINFMTGIR 76 (256)
Q Consensus 1 M~n~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l~~----~G~~sl~naL~ 76 (256)
|...|+.|+||+.+++++..|+.. -|..+||||+|.+.+.++.++|.|...+...|+.+.+ .|.+.+..||+
T Consensus 24 M~~~d~~~~r~~~ak~~~~~~~~~----~~~~~v~lv~F~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~T~l~~al~ 99 (218)
T 3ibs_A 24 MLAQDVQPSRLEKAKRLISRLVDE----LDNDKVGMIVFAGDAFTQLPITSDYISAKMFLESISPSLISKQGTAIGEAIN 99 (218)
T ss_dssp GGCCSSSSCHHHHHHHHHHHHHHT----CSSCEEEEEEESSSEEEEEEEESCHHHHHHHHHTCCGGGCCSCSCCHHHHHH
T ss_pred cccccCCcCHHHHHHHHHHHHHHh----CCCCeEEEEEECCCceEeCCCCCCHHHHHHHHHhcCcccCCCCCCcHHHHHH
Confidence 677899999999999999999975 3578999999999999999999999999999988765 69999999999
Q ss_pred HHHHHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 77 IAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 77 ~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.|...|+..+ ...+.||+|.+|..+.+ ++.+.++.+++.+|+|.+|++|.+
T Consensus 100 ~a~~~l~~~~--~~~~~ivllTDG~~~~~--~~~~~~~~~~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 100 LATRSFTPQE--GVGRAIIVITDGENHEG--GAVEAAKAAAEKGIQVSVLGVGMP 150 (218)
T ss_dssp HHHTTSCSCS--SCCEEEEEEECCTTCCS--CHHHHHHHHHTTTEEEEEEEESCT
T ss_pred HHHHHHhhCC--CCCcEEEEEcCCCCCCC--cHHHHHHHHHhcCCEEEEEEecCC
Confidence 9999887664 45678888888865433 688899999999999999999985
No 4
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.48 E-value=1.7e-13 Score=134.45 Aligned_cols=131 Identities=15% Similarity=0.262 Sum_probs=111.6
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc--------------eEEEcCCCCHHHHHHhhcc-cC
Q psy14666 1 MRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV--------------EVLATLTSDVGRILSKLHQ-VQ 64 (256)
Q Consensus 1 M~n~D~-~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a--------------~vl~~lT~d~~~il~aL~~-l~ 64 (256)
|.++|+ .||||+++++++..|++.+...+|...||||.|++.+ .++.+++....+.+..|+. +.
T Consensus 20 M~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~~l~~~~~~~l~~l~~~l~ 99 (565)
T 1jey_B 20 MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLPDFDLLEDIESKIQ 99 (565)
T ss_dssp GGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEEEEECCCHHHHHHHHTTCC
T ss_pred hcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccCCCceEEeecCCCCCHHHHHHHHhhcc
Confidence 778888 8999999999999999999889999999999998743 2567777666778888987 77
Q ss_pred CC-CcccHHHHHHHHHHHhccc--CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEE-EEEecCC
Q psy14666 65 PN-GNINFMTGIRIAHLALKHR--QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVD-IVSFGEE 131 (256)
Q Consensus 65 ~~-G~~sl~naL~~A~~aLkh~--p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~-vI~fGae 131 (256)
++ +.+++.+||.+|...|++. ..+...+|||||.++....+..++.++++.++++||.|+ ||+||..
T Consensus 100 ~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 100 PGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCCTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred CCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCHHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 65 7899999999999999886 333356899999987655566789999999999999999 9999865
No 5
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.36 E-value=8.7e-12 Score=105.17 Aligned_cols=162 Identities=6% Similarity=0.096 Sum_probs=113.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEE----cCCCCHHHHHHhhcccCC-----CCcccHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA----TLTSDVGRILSKLHQVQP-----NGNINFMTG 74 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~----~lT~d~~~il~aL~~l~~-----~G~~sl~na 74 (256)
+-+..++|+.+++++..|++.+...++..+||||+|.+.+..+. +++.|...+.++|+.+.. +|.+.+..|
T Consensus 26 gSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~a 105 (223)
T 1q0p_A 26 DSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKA 105 (223)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccccCCCCCHHHHHHHHHhcccccccCCCCccHHHH
Confidence 34556679999999999999877778888999999999888888 666788999999999874 689999999
Q ss_pred HHHHHHHhcccCC------CCCceEEEEEEcCCCCC--ChHHHHHHHHH----------HHhcCceEEEEEecCCccccc
Q psy14666 75 IRIAHLALKHRQG------KNHKMRIIAFVGSPVDL--EERELTKLAKR----------LKKEKVNVDIVSFGEEREGGK 136 (256)
Q Consensus 75 L~~A~~aLkh~p~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~----------lkk~nI~V~vI~fGae~~i~k 136 (256)
|+.|...|..... ...++.||||.+|..+. ||....+.++. +++.+|.|.+|++|.+.. .+
T Consensus 106 L~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~-~~ 184 (223)
T 1q0p_A 106 LQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN-QV 184 (223)
T ss_dssp HHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCC-HH
T ss_pred HHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCC-HH
Confidence 9999999875422 13556788888887663 67777666644 467899999999998653 22
Q ss_pred chhHHHHhhhCCCCCCccccc--eeeeeecccchhhhhcccc
Q psy14666 137 GQDEEEEEVQNTDRPNCHYNL--TLSTSLEKSSACETNTSIL 176 (256)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~g--~~~v~l~~~h~~~~l~~~~ 176 (256)
.|.++. . .+ +| .|..+-|.+.+.+.+.+.+
T Consensus 185 ~L~~iA----~-~~-----~G~~~~~~~~~~~~L~~~~~~i~ 216 (223)
T 1q0p_A 185 NINALA----S-KK-----DNEQHVFKVKDMENLEDVFYQMI 216 (223)
T ss_dssp HHHHHS----C-CC-----TTCCCEEETTC------------
T ss_pred HHHHHh----c-CC-----CCCceEEEcCCHHHHHHHHHHHh
Confidence 344432 1 23 45 6777777788877776654
No 6
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.31 E-value=6.2e-12 Score=103.10 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhccc---CCCCcccHHHHHHHHHHHhcccCCCCCc
Q psy14666 15 QDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV---QPNGNINFMTGIRIAHLALKHRQGKNHK 91 (256)
Q Consensus 15 ~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l---~~~G~~sl~naL~~A~~aLkh~p~~~~~ 91 (256)
+++++.++..+.+ |..+||||+|.+.+.++.+++.+...+..+|+.+ .++|.+.+..||+.|...|........+
T Consensus 27 ~~~~~~~~~~~~~--~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~ 104 (182)
T 1shu_X 27 YNFVQQLAERFVS--PEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTS 104 (182)
T ss_dssp HHHHHHHHHHCCC--TTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHhcC--CCceEEEEEeCCCceEEECCCCCHHHHHHHHHhcccCCCCCCchHHHHHHHHHHHHHhccCCCCC
Confidence 3444455554433 7889999999999999999999999888888765 4889999999999999998765333467
Q ss_pred eEEEEEEcCCCCCC-hHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccccceeeeeecccchhh
Q psy14666 92 MRIIAFVGSPVDLE-ERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACE 170 (256)
Q Consensus 92 ~rIVlfvgS~l~~D-~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~ 170 (256)
+.+|+|.+|..+.+ +..+.+.++.+++.+|+|.+|++|... ...|.++. . .+ +|.|.+.-|.+.+.+
T Consensus 105 ~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~igvg~~~--~~~L~~ia----~-~~-----~~~~~~~~~~~~L~~ 172 (182)
T 1shu_X 105 SIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLDFE--QAQLERIA----D-SK-----EQVFPVKGGFQALKG 172 (182)
T ss_dssp EEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEEECSSCC--HHHHHHHS----S-SG-----GGEEESSSTTHHHHH
T ss_pred eEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEEeCCcCC--HHHHHHHh----C-CC-----CceEEccCCHHHHHH
Confidence 78888888875543 345677899999999999999999532 23444443 1 22 578888777777776
Q ss_pred hhccc
Q psy14666 171 TNTSI 175 (256)
Q Consensus 171 ~l~~~ 175 (256)
.+.++
T Consensus 173 ~~~~i 177 (182)
T 1shu_X 173 IINSI 177 (182)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 7
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.30 E-value=3.9e-11 Score=99.52 Aligned_cols=127 Identities=14% Similarity=0.148 Sum_probs=102.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccC-CCCcccHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ-PNGNINFMTGIRIA 78 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~-~~G~~sl~naL~~A 78 (256)
+.+.+++|+.+++++..|++.+-...+..+||||+|.+.+.+..+++. +...+.++|..+. .+|.+.+..||+.|
T Consensus 28 gSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a 107 (178)
T 2xgg_A 28 GSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNAVDKQLAAHAVLDMPYKKGSTNTSDGLKAC 107 (178)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTSGGGSCHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCCCCccCHHHHHHHHHhCCCCCCCccHHHHHHHH
Confidence 446678999999999999987433334469999999999999999987 7899999999986 78999999999999
Q ss_pred HHHhc-----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666 79 HLALK-----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE 133 (256)
Q Consensus 79 ~~aLk-----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~ 133 (256)
...|. .++ ..++.||||.+|..+ ++.++.+.++.+++.+|+|.+|++|.+..
T Consensus 108 ~~~l~~~~~g~r~--~~~~~iillTDG~~~-~~~~~~~~~~~l~~~gi~v~~igvG~~~~ 164 (178)
T 2xgg_A 108 KQILFTGSRPGRE--HVPKLVIGMTDGESD-SDFRTVRAAKEIRELGGIVTVLAVGHYVA 164 (178)
T ss_dssp HHHHHHCCCTTCT--TSCEEEEEEESSCCC-HHHHHSHHHHHHHHTTCEEEEEECC----
T ss_pred HHHhcCcccCCCC--CCCEEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEcCCcCC
Confidence 98763 233 457788888888654 55568899999999999999999998765
No 8
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.25 E-value=1.7e-10 Score=97.69 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=105.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCCC--cccHHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPNG--NINFMTGIRIAH 79 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~G--~~sl~naL~~A~ 79 (256)
+.+.+++|+.+++++..|++.+--..+..+||||.|.+.+.+..+++ .|...+.++|+.+...| .+.++.||+.|.
T Consensus 24 gSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~~T~~~~aL~~a~ 103 (202)
T 1ijb_A 24 SRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTL 103 (202)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCBSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecCCCCCHHHHHHHHHhCcCCCCCcCcHHHHHHHHH
Confidence 44567799999999999998654333456999999999999989988 88999999999987644 389999999998
Q ss_pred HHh-cc--cCCCCCceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 80 LAL-KH--RQGKNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 80 ~aL-kh--~p~~~~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
..+ .. ++ ..++.+|||.+|..+. ++.++.+.++.+++.+|.|.+||+|.... .+.|.++.
T Consensus 104 ~~~~~~~~r~--~~~~~iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~~~~-~~~L~~iA 167 (202)
T 1ijb_A 104 FQIFSKIDRP--EASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHAN-LKQIRLIE 167 (202)
T ss_dssp HHTSSSCSCT--TSEEEEEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEESTTSC-HHHHHHHH
T ss_pred HHHhccCCCC--CCCeEEEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCCcCC-HHHHHHHh
Confidence 554 42 33 4567788888886543 34578899999999999999999997543 23444443
No 9
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.25 E-value=1.5e-10 Score=96.28 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=103.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcC--CCCHHHHHHhhcccCC-CCcccHHHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATL--TSDVGRILSKLHQVQP-NGNINFMTGIRIAHL 80 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~l--T~d~~~il~aL~~l~~-~G~~sl~naL~~A~~ 80 (256)
+.+.++||+.+++++..|++.+-......+||||.|.+.+.+..++ +.|...+..+++.+.. +|.+.+..||+.|..
T Consensus 16 gSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~ 95 (189)
T 1atz_A 16 SSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGPSQIGDALGFAVR 95 (189)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTCCCCHHHHHHHHHTCCCCCCCCCHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEecCCCCCHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence 4566789999999999999875323344699999999999999998 8999999999999874 788999999999998
Q ss_pred Hhcc-----cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 81 ALKH-----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 81 aLkh-----~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
.|.. +| ..++.+|+++++..+.+ +.+.++.+++.+|+|.+|++|.... .+.|..+.
T Consensus 96 ~l~~~~~g~r~--~~~~~vivltdg~~~~~---~~~~~~~~~~~gi~v~~igvG~~~~-~~~L~~iA 156 (189)
T 1atz_A 96 YLTSEMHGARP--GASKAVVILVTDVSVDS---VDAAADAARSNRVTVFPIGIGDRYD-AAQLRILA 156 (189)
T ss_dssp HHHSCCTTCCT--TSEEEEEEEECSCCSSC---CHHHHHHHHHTTEEEEEEEESSSSC-HHHHHHHT
T ss_pred HHhccccCCCC--CCCcEEEEEeCCCCCch---HHHHHHHHHHCCCEEEEEEcCCcCC-HHHHHHHH
Confidence 8754 33 23445777776643333 5678889999999999999998644 23455543
No 10
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.24 E-value=8.9e-11 Score=113.01 Aligned_cols=147 Identities=11% Similarity=0.087 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--------CCHHHHHHhhcccCCCCcccHHHHHHHHH
Q psy14666 8 PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--------SDVGRILSKLHQVQPNGNINFMTGIRIAH 79 (256)
Q Consensus 8 PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--------~d~~~il~aL~~l~~~G~~sl~naL~~A~ 79 (256)
++||+.+++++..|++. ..|..++|||+|.+.+..+.+++ .|...+..+|..+.+.|.+.+..||+.|.
T Consensus 94 ~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~a~~~~p~t~~l~~~~~~~~~~l~~~I~~L~~~GgT~l~~aL~~A~ 170 (464)
T 4fx5_A 94 RTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEGARVVYPTGGQLLRADYQSRAAAKEAVGRLHANGGTAMGRWLAQAG 170 (464)
T ss_dssp THHHHHHHHHHHHHHHH---SCTTCEEEEEEESSSEEEEESSSSSCEECSHHHHHHHHHHHHTCCCCSCCCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCceEEEecCCcccccCCHHHHHHHHHHHHcCCCCCCCcHHHHHHHHH
Confidence 89999999999999986 45778999999999999999986 68889999999999999999999999999
Q ss_pred HHhcccCCCCCceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcc--cccchhHHHHhhhCCCCCCcccc
Q psy14666 80 LALKHRQGKNHKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEERE--GGKGQDEEEEEVQNTDRPNCHYN 156 (256)
Q Consensus 80 ~aLkh~p~~~~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~--i~k~l~~~~~~~~~~~~~~~~~~ 156 (256)
..|+..+ ...+.||+|.+|..+. ++..+....+ ..+.+|+|++||||.+.. ..+.|++. + +
T Consensus 171 ~~l~~~~--~~~~~IILLTDG~~~~~~~~~l~~~~~-a~~~~i~i~tiGiG~~~d~~~L~~IA~~--------t-----g 234 (464)
T 4fx5_A 171 RIFDTAP--SAIKHAILLTDGKDESETPADLARAIQ-SSIGNFTADCRGIGEDWEPKELRKIADA--------L-----L 234 (464)
T ss_dssp HHHTTCT--TSEEEEEEEESSCCTTSCHHHHHHHHH-HHTTTCEEEEEEESSSSCHHHHHHHHHH--------T-----T
T ss_pred HHHhcCC--CCCCEEEEEcCCCCCCCChHHHHHHHH-HhcCCCeEEEEEeCCccCHHHHHHHHHh--------C-----C
Confidence 9998765 4567888888887653 5555555444 457899999999997643 34444442 2 5
Q ss_pred ceeeeeecccchhhhhc
Q psy14666 157 LTLSTSLEKSSACETNT 173 (256)
Q Consensus 157 g~~~v~l~~~h~~~~l~ 173 (256)
|.|..+-|.+.+.+.+.
T Consensus 235 G~~~~v~d~~~L~~~f~ 251 (464)
T 4fx5_A 235 GTVGIIRDPATLAEDFR 251 (464)
T ss_dssp CCEEEESSGGGHHHHHH
T ss_pred CEEEEcCCHHHHHHHHH
Confidence 78999888887765543
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.23 E-value=1.8e-11 Score=101.89 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=113.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccC-CCCcccHHHHHHHHHHHh
Q psy14666 6 FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNGNINFMTGIRIAHLAL 82 (256)
Q Consensus 6 ~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~-~~G~~sl~naL~~A~~aL 82 (256)
+....+...+++++.++..+. ++..+||||+|.+.+.+..+++. +...+.++|..+. ++|.+.+..||+.|...|
T Consensus 22 M~~~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l 99 (198)
T 1n3y_A 22 ISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRL 99 (198)
T ss_dssp SCHHHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSEEEEECHHHHHHCSSGGGGGTTCCCCCSCBCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCccEEEecCccCCHHHHHHHHhcCcCCCCCchHHHHHHHHHHHH
Confidence 344467788889999998765 67889999999999888888864 2245677777764 689999999999999554
Q ss_pred -ccc--CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCcccc
Q psy14666 83 -KHR--QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYN 156 (256)
Q Consensus 83 -kh~--p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~ 156 (256)
+.. .....++.||+|.+|..+.|+.++.+.++.+++.+|+|.+|++|.... ..+.|.++. . .+ +
T Consensus 100 ~~~~~~~r~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA----~-~~-----~ 169 (198)
T 1n3y_A 100 FHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIA----S-KP-----S 169 (198)
T ss_dssp TSGGGTCCTTSEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHS----C-SS-----S
T ss_pred hCcccCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHH----c-CC-----C
Confidence 421 012456778888888766577777888999999999999999998762 123444433 1 23 4
Q ss_pred cee-eeeecccchhhhhcc
Q psy14666 157 LTL-STSLEKSSACETNTS 174 (256)
Q Consensus 157 g~~-~v~l~~~h~~~~l~~ 174 (256)
|.| ..+-|.+.+.+++..
T Consensus 170 g~~~~~~~~~~~l~~~~~~ 188 (198)
T 1n3y_A 170 QEHIFKVEDFDALKDIQNQ 188 (198)
T ss_dssp GGGEEEESSGGGGGGGHHH
T ss_pred cccEEEeCCHHHHHHHHHH
Confidence 777 555566666665543
No 12
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.23 E-value=2.4e-10 Score=97.82 Aligned_cols=153 Identities=10% Similarity=0.106 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHHHH-hc--
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAHLA-LK-- 83 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~~a-Lk-- 83 (256)
|+.+++++..|++.+....+..+||||+|.+.+.+..+++ .+...++++|+.+... | .+.+..||+.|... +.
T Consensus 38 ~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~ 117 (223)
T 2b2x_A 38 WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIVQRGGRQTMTALGIDTARKEAFTEA 117 (223)
T ss_dssp HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTTTCCSHHHHHHHHTTCCCCCCSSCCHHHHHHHHHHTTSSGG
T ss_pred HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecCCCCCHHHHHHHHHhhhccCCCCccHHHHHHHHHHHhcCcc
Confidence 7888889999987654456788999999999899888885 4678889999988654 4 49999999999987 43
Q ss_pred --ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCccc--------ccchhHHHHhhhCCCCCCc
Q psy14666 84 --HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREG--------GKGQDEEEEEVQNTDRPNC 153 (256)
Q Consensus 84 --h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i--------~k~l~~~~~~~~~~~~~~~ 153 (256)
.++ ..++.+|||.+|..+ ++.++.+.++.+++.+|+|.+|++|.+..- -+.|.++. ...+
T Consensus 118 ~~~~~--~~~~~iillTDG~~~-~~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA----~~p~--- 187 (223)
T 2b2x_A 118 RGARR--GVKKVMVIVTDGESH-DNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIA----SEPT--- 187 (223)
T ss_dssp GTCCT--TSEEEEEEEESSCCT-TGGGHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTS----CSSG---
T ss_pred cCCCC--CCCeEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHHh----CCCc---
Confidence 233 456678888888654 555788899999999999999999986431 12333332 1112
Q ss_pred cccceeeeeecccchhhhhccc
Q psy14666 154 HYNLTLSTSLEKSSACETNTSI 175 (256)
Q Consensus 154 ~~~g~~~v~l~~~h~~~~l~~~ 175 (256)
+|.|..+-|.+.+.+++.++
T Consensus 188 --~g~~~~~~~~~~L~~i~~~i 207 (223)
T 2b2x_A 188 --EKHFFNVSDELALVTIVKAL 207 (223)
T ss_dssp --GGTEEEESSTTGGGGGHHHH
T ss_pred --hhcEEEeCCHHHHHHHHHHH
Confidence 46777776777766655443
No 13
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.22 E-value=1.6e-11 Score=102.43 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=115.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccC-CCCcccHHHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQ-PNGNINFMTGIRIAHL 80 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~-~~G~~sl~naL~~A~~ 80 (256)
+-+.+++|+.++++++.|++.+- ++..+||||.|.+.+.++.+++. +...+..++..+. .+|.+.+..||+.|..
T Consensus 16 gSm~~~~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~g~T~~~~aL~~a~~ 93 (194)
T 1mf7_A 16 GSIIPHDFRRMKEFVSTVMEQLK--KSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGRTHTATGIRKVVR 93 (194)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHC--CTTEEEEEEEESSSEEEEECHHHHHHSCCHHHHHTTCCCCCSCBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEEecCCceEEEecCCcCCHHHHHHHHHhCcCCCCCchHHHHHHHHHH
Confidence 44567799999999999998755 45679999999998998888876 4557888888887 4899999999999997
Q ss_pred Hhcc-----cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc---cccchhHHHHhhhCCCCCC
Q psy14666 81 ALKH-----RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPN 152 (256)
Q Consensus 81 aLkh-----~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~ 152 (256)
.|.. ++ ..++.+|||.+|..+.|+.++.+.++.+++.+|+|.+|++|.+.. ..+.|.++. . .++
T Consensus 94 ~l~~~~~~~r~--~~~~~iillTDG~~~~d~~~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA----~-~~~- 165 (194)
T 1mf7_A 94 ELFNITNGARK--NAFKILVVITDGEKFGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIA----S-KPP- 165 (194)
T ss_dssp TTTSGGGTCCT--TSEEEEEEEESSCCBSCSSCGGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHS----C-SSH-
T ss_pred HhcCcccCCCC--CCCeEEEEEcCCCCCCCchhhHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHh----C-CCC-
Confidence 6521 33 346678888888765466666778899999999999999998753 134555543 1 110
Q ss_pred ccccceeeeeecccchhhhhc
Q psy14666 153 CHYNLTLSTSLEKSSACETNT 173 (256)
Q Consensus 153 ~~~~g~~~v~l~~~h~~~~l~ 173 (256)
+|.|..+=|.+.+.+++.
T Consensus 166 ---~~~~~~~~~~~~l~~~~~ 183 (194)
T 1mf7_A 166 ---RDHVFQVNNFEALKTIQN 183 (194)
T ss_dssp ---HHHEEEESSGGGGGGGHH
T ss_pred ---cccEEEeCCHHHHHHHHH
Confidence 245555556666555543
No 14
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.17 E-value=3.9e-10 Score=99.83 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=106.6
Q ss_pred CCCCCCHH-HHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCC----HHHHHHhhccc----CCCCcccHHHH
Q psy14666 4 GDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQV----QPNGNINFMTG 74 (256)
Q Consensus 4 ~D~~PnRL-~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d----~~~il~aL~~l----~~~G~~sl~na 74 (256)
+.+.++.+ ..++++++.|++.+.-.++..+||||.|.+.+.++.+++.. ...+..+|+.+ .++|.+.+..|
T Consensus 29 gSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~G~T~~~~A 108 (266)
T 4hqo_A 29 GSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAA 108 (266)
T ss_dssp TTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTSHHHHCHHHHHHHHHHHHHHCCCCSCCCHHHH
T ss_pred CCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCCCCccCHHHHHHHHHHhhhccCCCCCCCHHHH
Confidence 34555667 47899999999987655677899999999999999999864 78899999988 68999999999
Q ss_pred HHHHHHHhccc-CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666 75 IRIAHLALKHR-QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE 133 (256)
Q Consensus 75 L~~A~~aLkh~-p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~ 133 (256)
|+.|...|+.. .....++.+|||.+|..+ |+.++.+.++.+++.+|.|.+||+|....
T Consensus 109 L~~a~~~l~~~~~r~~~~~~iIllTDG~~~-d~~~~~~~a~~l~~~gi~i~~iGiG~~~~ 167 (266)
T 4hqo_A 109 LDEVQKHLNDRVNREKAIQLVILMTDGVPN-SKYRALEVANKLKQRNVRLAVIGIGQGIN 167 (266)
T ss_dssp HHHHHHHHHTTCSCTTSEEEEEEEECSCCS-CHHHHHHHHHHHHHTTCEEEEEECSSSCC
T ss_pred HHHHHHHHhhccccCCCCeEEEEEccCCCC-CchHHHHHHHHHHHCCCEEEEEecCcccC
Confidence 99998888653 112456788888888654 88899999999999999999999998654
No 15
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.16 E-value=1.2e-10 Score=95.53 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhccc---CCCCcccHHHHHHHHHHHhcc--c
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV---QPNGNINFMTGIRIAHLALKH--R 85 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l---~~~G~~sl~naL~~A~~aLkh--~ 85 (256)
+...+++++.++..+. .|..+||||+|.+.+.++.+++.|...+..+|+.+ .++|.+.+..||+.|...|.. .
T Consensus 24 ~~~~~~~~~~~~~~~~--~~~~~v~lv~f~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~ 101 (185)
T 3n2n_F 24 WNEIYYFVEQLAHKFI--SPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENR 101 (185)
T ss_dssp HHHHHHHHHHHHHHCC--CTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC--CCCcEEEEEEEecCceEEeccCCCHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHhhccc
Confidence 5666777777887763 47889999999999999999999999999988876 468999999999999998732 2
Q ss_pred CCCCCceEEEEEEcCCCCCChH-HHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 86 QGKNHKMRIIAFVGSPVDLEER-ELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 86 p~~~~~~rIVlfvgS~l~~D~~-di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
+....++.+|+|.+|..+.++. ++.+.++.+++.+|.|.+||+|. ...+.|.++.
T Consensus 102 ~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~igvg~--~~~~~L~~iA 157 (185)
T 3n2n_F 102 QGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYAVGVKD--FNETQLARIA 157 (185)
T ss_dssp TCBCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHTTEEEEEEECSS--CCHHHHTTTS
T ss_pred cCCCCCcEEEEEcCCCCCCCcccchHHHHHHHHHCCCEEEEEEecc--CCHHHHHHHh
Confidence 2223566788888886543322 55789999999999999999993 3344555543
No 16
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.16 E-value=1.7e-10 Score=109.03 Aligned_cols=160 Identities=7% Similarity=0.109 Sum_probs=117.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEE----cCCCCHHHHHHhhcccC-----CCCcccHHHHH
Q psy14666 5 DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLA----TLTSDVGRILSKLHQVQ-----PNGNINFMTGI 75 (256)
Q Consensus 5 D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~----~lT~d~~~il~aL~~l~-----~~G~~sl~naL 75 (256)
-+..+||+.++++++.|++.+-..++..+||||+|++.+.+.. ++|.|...+.++|+.+. .+|.+.+..||
T Consensus 13 SM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al 92 (497)
T 1rrk_A 13 SIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKAL 92 (497)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeeccccccccCHHHHHHHHHhCcCccccccCccCHHHHH
Confidence 3455899999999999999887777788999999999898888 77889999999999886 46789999999
Q ss_pred HHHHHHhcccCC------CCCceEEEEEEcCCCCC--ChHHHHHHHHHH----------HhcCceEEEEEecCCcccccc
Q psy14666 76 RIAHLALKHRQG------KNHKMRIIAFVGSPVDL--EERELTKLAKRL----------KKEKVNVDIVSFGEEREGGKG 137 (256)
Q Consensus 76 ~~A~~aLkh~p~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~l----------kk~nI~V~vI~fGae~~i~k~ 137 (256)
+.|...|..... ...++.+||+.+|..+. |+....+.++.+ ++.+|+|.+|++|.+.. .+.
T Consensus 93 ~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~-~~~ 171 (497)
T 1rrk_A 93 QAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVN-QVN 171 (497)
T ss_dssp HHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCC-HHH
T ss_pred HHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccC-HHH
Confidence 999999854321 23466788888886553 444444443333 34499999999998643 233
Q ss_pred hhHHHHhhhCCCCCCccccc--eeeeeecccchhhhhccc
Q psy14666 138 QDEEEEEVQNTDRPNCHYNL--TLSTSLEKSSACETNTSI 175 (256)
Q Consensus 138 l~~~~~~~~~~~~~~~~~~g--~~~v~l~~~h~~~~l~~~ 175 (256)
|.++. ..+ +| .|..+-|.+.+.+++.+.
T Consensus 172 L~~iA-----~~~-----~g~~~~~~~~~~~~l~~~~~~~ 201 (497)
T 1rrk_A 172 INALA-----SKK-----DNEQHVCKVKDMECLEDVFYQM 201 (497)
T ss_dssp HHHHS-----CCC-----TTCCCEEETTCHHHHHHHHHHH
T ss_pred HHHHh-----cCC-----CCcceEEEeCCHHHHhhhhhhc
Confidence 44433 123 45 677776777777777643
No 17
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.14 E-value=2.7e-12 Score=106.53 Aligned_cols=135 Identities=15% Similarity=0.229 Sum_probs=106.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecC-cceEEEcCCCCHHHHHHhhcccCCCCcccHHHHHHHHHHHh
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAD-SVEVLATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLAL 82 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~-~a~vl~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~~aL 82 (256)
+-+.++|++.+++++..|+... ..+..+||||+|.+ .++++.++|.+...+...|..+.++|.+.+..||+.|...|
T Consensus 16 gSM~~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~~~~~~~i~~l~~~g~T~~~~al~~a~~~l 93 (189)
T 2x31_A 16 GSAAVARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGTPLASGMEMAMVTA 93 (189)
T ss_dssp TTSCC--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCHHHHHHHHHHCCCCBCCCCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 3445789999999999999763 36788999999997 68889999999999999999999999999999999999998
Q ss_pred cccCCCCCceEEEEEEcCCCCCCh----------HHHHHHHHHHHhcCceEEEEEecCC-cccccchhH
Q psy14666 83 KHRQGKNHKMRIIAFVGSPVDLEE----------RELTKLAKRLKKEKVNVDIVSFGEE-REGGKGQDE 140 (256)
Q Consensus 83 kh~p~~~~~~rIVlfvgS~l~~D~----------~di~~~~k~lkk~nI~V~vI~fGae-~~i~k~l~~ 140 (256)
+........+.||+|.++..+... .++.+.++.+++.+|.|.+|++|.. ....+.|++
T Consensus 94 ~~~~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA~ 162 (189)
T 2x31_A 94 KQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIIDTAMRPNPALVDLAR 162 (189)
T ss_dssp HTCTTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHHHHHSSCSSSCSTTT
T ss_pred HhccCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH
Confidence 765433457788888888655321 1334567788999999999999986 445556665
No 18
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=99.10 E-value=7.3e-10 Score=109.86 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=101.3
Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcc----------eEEEcCCCCHHHHHHhhccc-----
Q psy14666 1 MRNGD--FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSV----------EVLATLTSDVGRILSKLHQV----- 63 (256)
Q Consensus 1 M~n~D--~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a----------~vl~~lT~d~~~il~aL~~l----- 63 (256)
|.+.| ..||||+++++++..|++.+.-.+|...||||.|+..+ .++.+++.--...+..|.++
T Consensus 48 M~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ik~l~~l~~~~~ 127 (609)
T 1jey_A 48 MFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQG 127 (609)
T ss_dssp GGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHH
T ss_pred HcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHHHHHHHHHhhccc
Confidence 66677 58999999999999999998888999999999999865 35555532112233333332
Q ss_pred --------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCC--Ch---HHHHHHHHHHHhcCceEEEEEecC
Q psy14666 64 --------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDL--EE---RELTKLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 64 --------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~--D~---~di~~~~k~lkk~nI~V~vI~fGa 130 (256)
..++.+++.+||.+|...|++...+...+|||||.++.... ++ ..+...++.|++.||+|++|++|.
T Consensus 128 ~~~~~~~~g~~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~ 207 (609)
T 1jey_A 128 QKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKK 207 (609)
T ss_dssp HHHHHHHHCCSCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEESCSCTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCC
T ss_pred chhhhhhcCCCCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcCCCCCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCC
Confidence 22467999999999999998764333578999999875543 32 268889999999999999999998
Q ss_pred Cc
Q psy14666 131 ER 132 (256)
Q Consensus 131 e~ 132 (256)
+.
T Consensus 208 ~~ 209 (609)
T 1jey_A 208 PG 209 (609)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 19
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.10 E-value=2.7e-09 Score=89.53 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHHHH-hcc-
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAHLA-LKH- 84 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~~a-Lkh- 84 (256)
|+.+++++..|++.+--.++..+||||+|.+.+.+..+++ .+...++++|+.+.+. | .+.+..||+.|... +..
T Consensus 22 ~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~ 101 (200)
T 1v7p_C 22 WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAA 101 (200)
T ss_dssp HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTTTCSSHHHHHHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCCCcCCHHHHHHHHHhhhccCCCCCcHHHHHHHHHHhhcccc
Confidence 7888999999998654444577999999999999999998 5788899999998764 4 59999999999986 432
Q ss_pred ---cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecC
Q psy14666 85 ---RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 85 ---~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGa 130 (256)
++ ..++.+|||.+|..+ |+.++.+.++.+++.+|.|.+|++|.
T Consensus 102 ~g~r~--~~~~~ivllTDG~~~-~~~~~~~~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 102 SGGRR--SATKVMVVVTDGESH-DGSMLKAVIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp GTCCT--TSEEEEEEEESSCCS-CGGGHHHHHHHHHHTTEEEEEEEECH
T ss_pred cCCCC--CCCeEEEEEccCCCC-CcccHHHHHHHHHHCCCEEEEEEecc
Confidence 33 456678888888754 66677889999999999999999953
No 20
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.09 E-value=1.4e-09 Score=92.21 Aligned_cols=152 Identities=10% Similarity=0.094 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCC--CCHHHHHHhhcccCCC-C-cccHHHHHHHHHHHh-c--
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLT--SDVGRILSKLHQVQPN-G-NINFMTGIRIAHLAL-K-- 83 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT--~d~~~il~aL~~l~~~-G-~~sl~naL~~A~~aL-k-- 83 (256)
|+.++++++.|++.+--..+..+||||+|.+.+.+..+++ .+...++++|..+.+. | .+.+..||+.|...| .
T Consensus 23 ~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~~~~~~~~~~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~ 102 (213)
T 1pt6_A 23 WDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGTDTARKEAFTEA 102 (213)
T ss_dssp HHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTTTCSSHHHHHHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGG
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEeccccCCHHHHHHHHHhccCCCCCcccHHHHHHHHHHHhcCcc
Confidence 7888888888887643346778999999999999888885 4678889999988754 5 489999999999874 4
Q ss_pred --ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCccc--------ccchhHHHHhhhCCCCCCc
Q psy14666 84 --HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREG--------GKGQDEEEEEVQNTDRPNC 153 (256)
Q Consensus 84 --h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i--------~k~l~~~~~~~~~~~~~~~ 153 (256)
.++ ..++.+|||.+|..+ ++.++.+.++.+++.+|.|.+|++|....- -+.|.++. ...+
T Consensus 103 ~~~r~--~~~~~iillTDG~~~-~~~~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA----~~~~--- 172 (213)
T 1pt6_A 103 RGARR--GVKKVMVIVTDGESH-DNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIA----SEPT--- 172 (213)
T ss_dssp GTCCT--TCEEEEEEEESSCCS-CSHHHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHS----CSSH---
T ss_pred cCCCC--CCCeEEEEEcCCCCC-CCccHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHh----CCCc---
Confidence 233 456678888888654 455788899999999999999999975320 13333332 1112
Q ss_pred cccceeeeeecccchhhhhcc
Q psy14666 154 HYNLTLSTSLEKSSACETNTS 174 (256)
Q Consensus 154 ~~~g~~~v~l~~~h~~~~l~~ 174 (256)
+|.|..+=|.+.+.+++..
T Consensus 173 --~g~~~~~~~~~~l~~i~~~ 191 (213)
T 1pt6_A 173 --EKHFFNVSDELALVTIVKT 191 (213)
T ss_dssp --HHHEEEESSGGGGGGGHHH
T ss_pred --hhcEEEeCCHHHHHHHHHH
Confidence 4666666666666655544
No 21
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.07 E-value=2.1e-09 Score=95.37 Aligned_cols=128 Identities=12% Similarity=0.175 Sum_probs=102.1
Q ss_pred CCCCCCHH-HHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCC----HHHHHHhhcccC----CCCcccHHHH
Q psy14666 4 GDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSD----VGRILSKLHQVQ----PNGNINFMTG 74 (256)
Q Consensus 4 ~D~~PnRL-~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d----~~~il~aL~~l~----~~G~~sl~na 74 (256)
+.+..+.+ +.+++++..|++.+-......+||||+|.+.+..+.+++.+ ...++.+|+.+. ++|.+.++.|
T Consensus 32 gSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~~~~~~~~l~~~i~~l~~~~~~~G~T~~~~a 111 (281)
T 4hqf_A 32 GSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSDASKNKEKALIIIKSLLSTNLPYGKTSLTDA 111 (281)
T ss_dssp CCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSSCSSCHHHHHHHHHHHHHTTGGGCSCCHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccccCccCHHHHHHHHHHHhhccCCCCCccHHHH
Confidence 34455555 88999999999876555556799999999988888777754 788888888774 6899999999
Q ss_pred HHHHHHHhcccCC-CCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCc
Q psy14666 75 IRIAHLALKHRQG-KNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 75 L~~A~~aLkh~p~-~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
|+.|...|..... ...++.||||.+|..+ |+.++.+.++.|++.+|.|.+||+|...
T Consensus 112 L~~a~~~l~~~~~r~~~~~~iillTDG~~~-d~~~~~~~~~~l~~~gv~i~~igiG~~~ 169 (281)
T 4hqf_A 112 LLQVRKHLNDRINRENANQLVVILTDGIPD-SIQDSLKESRKLSDRGVKIAVFGIGQGI 169 (281)
T ss_dssp HHHHHHHHHTSCCCTTCEEEEEEEESSCCS-CHHHHHHHHHHHHHTTCEEEEEEESSSC
T ss_pred HHHHHHHHHhccCCCCCCEEEEEEecCCCC-CcHHHHHHHHHHHHCCCEEEEEeCCCcc
Confidence 9999888764321 2346677888888654 7889999999999999999999999874
No 22
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.97 E-value=1.9e-09 Score=102.55 Aligned_cols=162 Identities=10% Similarity=0.168 Sum_probs=117.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccCCC-----CcccHHHHH
Q psy14666 5 DFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQPN-----GNINFMTGI 75 (256)
Q Consensus 5 D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~~~-----G~~sl~naL 75 (256)
.+..++++.+++++..|++.+...++..+||||+|++.+.++.+++. |...+..+|+.+... |.+.+..||
T Consensus 21 SM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL 100 (509)
T 2odp_A 21 SVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDMTEVISSLENANYKDHENGTGTNTYAAL 100 (509)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccCCCCCCHHHHHHHHHhcccccCCCCCCccHHHHH
Confidence 34556889999999999988766678889999999999999999886 899999999998765 889999999
Q ss_pred HHHHHHhcccC---C------CCCceEEEEEEcCCCCC--ChHHHHHHHHHHH------hcCceEEEEEecCCcccccch
Q psy14666 76 RIAHLALKHRQ---G------KNHKMRIIAFVGSPVDL--EERELTKLAKRLK------KEKVNVDIVSFGEEREGGKGQ 138 (256)
Q Consensus 76 ~~A~~aLkh~p---~------~~~~~rIVlfvgS~l~~--D~~di~~~~k~lk------k~nI~V~vI~fGae~~i~k~l 138 (256)
+.|...|+... . ...++.||||.+|..+. ++..+.+.++.+. +.+|.|.+||+|......+.|
T Consensus 101 ~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L 180 (509)
T 2odp_A 101 NSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWREL 180 (509)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHH
T ss_pred HHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHH
Confidence 99998885311 0 02346778888886553 4554444444432 889999999999873333455
Q ss_pred hHHHHhhhCCCCCCccccce--eeeeecccchhhhhcccc
Q psy14666 139 DEEEEEVQNTDRPNCHYNLT--LSTSLEKSSACETNTSIL 176 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~g~--~~v~l~~~h~~~~l~~~~ 176 (256)
.++. . .+ +|. |..+=|.+.+.+++...+
T Consensus 181 ~~iA----~-~~-----~G~~~~~~~~~~~~l~~~~~~i~ 210 (509)
T 2odp_A 181 NELG----S-KK-----DGERHAFILQDTKALHQVFEHML 210 (509)
T ss_dssp HHHS----C-CC-----TTCCCEEEESSHHHHHHHHHHHE
T ss_pred Hhhc----c-CC-----CCceeeEEecCHHHHHHHHHhhh
Confidence 5543 1 22 355 555666777777765553
No 23
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.92 E-value=4.5e-09 Score=104.00 Aligned_cols=129 Identities=9% Similarity=0.155 Sum_probs=102.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC----CHHHHHHhhcccC-----CCCcccHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS----DVGRILSKLHQVQ-----PNGNINFMTG 74 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~----d~~~il~aL~~l~-----~~G~~sl~na 74 (256)
+.+.+++|+.+++++..|++.+.......+||||+|++.+.++.+++. |...++++|+.+. .+|.+.+..|
T Consensus 254 gSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~~ggT~~~~a 333 (741)
T 3hrz_D 254 GSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADSSNADWVTKQLNEINYEDHKLKSGTNTKKA 333 (741)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTSGGGGCHHHHHHHHTTCCGGGGSSSCCCCHHHH
T ss_pred CcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecccCCcCHHHHHHHHHhcccccccCCCChHHHHH
Confidence 345567899999999999998766566679999999999999999997 9999999999987 7899999999
Q ss_pred HHHHHHHhcc-----cCC-CCCceEEEEEEcCCCC--CChHHHHHHHH----------HHHhcCceEEEEEecCCc
Q psy14666 75 IRIAHLALKH-----RQG-KNHKMRIIAFVGSPVD--LEERELTKLAK----------RLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 75 L~~A~~aLkh-----~p~-~~~~~rIVlfvgS~l~--~D~~di~~~~k----------~lkk~nI~V~vI~fGae~ 132 (256)
|+.|...|.. +.. ...++.||||.+|..+ .||....+.++ .+++.+|+|.+||+|.+.
T Consensus 334 L~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~ 409 (741)
T 3hrz_D 334 LQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLV 409 (741)
T ss_dssp HHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSC
T ss_pred HHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcC
Confidence 9999999831 111 1245568888888554 25655554333 668899999999999743
No 24
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.68 E-value=8.5e-08 Score=80.72 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=96.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhcccCCC-C-cccHHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQVQPN-G-NINFMTGIRIAH 79 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l~~~-G-~~sl~naL~~A~ 79 (256)
+-+.+++|+.++++++.|++.+--..+..+||||.+.+.+....+++. +...+.++|+.+... | .+.+..||+.|.
T Consensus 32 ~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~i~~l~~~gg~~T~~~~aL~~a~ 111 (199)
T 3zqk_A 32 DKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIRYQGGNRTNTGLALRYLS 111 (199)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTTSCCCHHHHHHHHHHCCCCCCSCCCHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecCCcCCHHHHHHHHHhCcCCCCCcChHHHHHHHHH
Confidence 445677899999999999998654556779999999999999999885 899999999998654 4 499999999988
Q ss_pred HHhc-----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 80 LALK-----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 80 ~aLk-----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
..+. .|+ ..++.+|++.+|....+..+ + +.+|+|..||+|.... .+.|.++.
T Consensus 112 ~~l~~~~~g~r~--~~~~~iillTDG~~~d~v~~-------~-~~~v~v~~iGiG~~~~-~~~L~~iA 168 (199)
T 3zqk_A 112 DHSFLVSQGDRE--QAPNLVYMVTGNPASDEIKR-------L-PGDIQVVPIGVGPNAN-VQELERIG 168 (199)
T ss_dssp CCCTCGGGTCCT--TSCEEEEEEECSCCSSCCCC-------C-CTTEEEEEEEESTTCC-HHHHHHHH
T ss_pred HHhhCcccCCCC--CCCeEEEEEeCCCCchHHHH-------H-hCCCEEEEEEcCCCCC-HHHHHHHh
Confidence 7542 133 35667888888875433221 1 3799999999997433 34566654
No 25
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.63 E-value=5.4e-08 Score=102.47 Aligned_cols=126 Identities=14% Similarity=0.141 Sum_probs=103.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCC--CHHHHHHhhccc-CCCCcccHHHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTS--DVGRILSKLHQV-QPNGNINFMTGIRIAHL 80 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~--d~~~il~aL~~l-~~~G~~sl~naL~~A~~ 80 (256)
+.+.+++|+.++++++.|++.+- .+..+||||.+.+.+.+..+++. +...+.++++.+ ..+|.+.+..||+.|..
T Consensus 141 gSm~~~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs~~~~~~~~lt~~~~~~~l~~ai~~i~~~gG~T~~g~AL~~a~~ 218 (1095)
T 3k6s_A 141 GSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKFQTHFTFEEFRRSSNPLSLLASVHQLQGFTYTATAIQNVVH 218 (1095)
T ss_dssp TTSCSHHHHHHHHHHHHHHHSSC--SSSEEEEEEEESSSEEEEECSHHHHSCSCGGGGTTTCCCCCSCBCHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHHhcc--ccccEEEEEEECCeEEEEecCcccCCHHHHHHHHhhhhcccCCChHHHHHHHHHH
Confidence 55778999999999999998754 23469999999999999999985 666778888887 56789999999999987
Q ss_pred Hhccc---CCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 81 ALKHR---QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 81 aLkh~---p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.+... .....++.|||+.+|..+.|+.++.+.++.+++.+|.|.+||+|..
T Consensus 219 ~lf~~~~g~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r~~GI~i~aIGVG~~ 272 (1095)
T 3k6s_A 219 RLFHASYGARRDAAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIGVGLA 272 (1095)
T ss_dssp TTTSTTTTCCSSSEEEEEEEESSCCBSCSSCHHHHHHHHHHHCEEECCEEBSSG
T ss_pred hhccccccCCCCCCeEEEEEeCCCcCCCchhHHHHHHHHHHCCCEEEEEecccc
Confidence 65321 1123566788888987656888889999999999999999999986
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.58 E-value=2.4e-07 Score=76.70 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=85.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCcc-cceeeeeecCcceEEEcCCCCH--HHHHHhhcccC-CCCcccHHHHHHHHH
Q psy14666 4 GDFLPTRLQAQQDAVNLVCHSKTRSNPE-NNVGLLAMADSVEVLATLTSDV--GRILSKLHQVQ-PNGNINFMTGIRIAH 79 (256)
Q Consensus 4 ~D~~PnRL~aq~~a~~~fv~~~f~qNP~-sqVGIVt~~~~a~vl~~lT~d~--~~il~aL~~l~-~~G~~sl~naL~~A~ 79 (256)
+.+.+++|+.++++++.+++.+ .|. .+||||.+.+.+.+..+++... ..+..+++.+. .+|.+.++.||+.|.
T Consensus 13 ~Sm~~~~~~~~k~~~~~~~~~l---~~~~~rv~vv~fs~~~~~~~~l~~~~~~~~~~~~~~~i~~~~g~T~~~~aL~~a~ 89 (179)
T 1mjn_A 13 MSLQPDEFQKILDFMKDVMKKC---SNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLLTNTFGAINYVA 89 (179)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT---TTSSEEEEEEEESSSEEEEECHHHHHHHCCHHHHHTTCCCCCBCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---CCCCeEEEEEEECCceeEEEcCcccCCHHHHHHHHHhcccCCCCChHHHHHHHHH
Confidence 4466778999999999999985 244 4999999999999888887522 12344455443 368899999999998
Q ss_pred HH-hc----ccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcc
Q psy14666 80 LA-LK----HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE 133 (256)
Q Consensus 80 ~a-Lk----h~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~ 133 (256)
.. +. .|+ ..++.+||+.+|..+.+. .. .++.+|.|.+||+|....
T Consensus 90 ~~~~~~~~g~r~--~~~~~iillTDG~~~~~~-~~------~~~~~i~i~~igvG~~~~ 139 (179)
T 1mjn_A 90 TEVFREELGARP--DATKVLIIITDGEATDSG-NI------DAAKDIIRYIIGIGKHFQ 139 (179)
T ss_dssp HHTSSGGGTCCT--TSEEEEEEEESSCCSSCS-CC------GGGTTSEEEEEEESGGGC
T ss_pred HHhcccccCCCC--CCCeEEEEEcCCCCCCCc-ch------HHHCCCEEEEEEcccccc
Confidence 64 43 233 456778888888765332 21 267899999999998754
No 27
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.13 E-value=2.1e-06 Score=76.83 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=89.5
Q ss_pred CceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCc-------ccccchhHHHHhhhCCCCCCccccceeeee
Q psy14666 90 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER-------EGGKGQDEEEEEVQNTDRPNCHYNLTLSTS 162 (256)
Q Consensus 90 ~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~-------~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~ 162 (256)
..+.|||+.+|..++.. +..+.++.+++.||+|++||+|... ...+.+++. | ||.|..+
T Consensus 9 ~~k~iillTDG~~~~g~-~p~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~--------t-----GG~yf~a 74 (242)
T 3rag_A 9 TIRQILVITDGCSNIGP-DPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADA--------G-----GGMCRIV 74 (242)
T ss_dssp CEEEEEEEESSCCCSSS-CHHHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHH--------T-----TSCEEEE
T ss_pred CccEEEEEccCCCCCCC-CHHHHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHh--------c-----CCeEEEe
Confidence 46688899999876544 6788899999999999999997643 223344442 2 5788887
Q ss_pred ecccchhhhhcccc-----------------CCCCCCCCCCCccceecCCccc-----cc------eeeeeEeeecCCCc
Q psy14666 163 LEKSSACETNTSIL-----------------TPLGSIPPPDLTSLVRCPHVSH-----VV------AMITTSLNVDNSDF 214 (256)
Q Consensus 163 l~~~h~~~~l~~~~-----------------~pp~~~~~~~~~~lv~mgfp~~-----~~------~~~~~~~~~dns~~ 214 (256)
+...+.+.+...+ ..-+. ++=.+++..+ ++ .+.-+++.+|.|..
T Consensus 75 -~~~~l~~~~~~~t~~~~~~t~q~~v~~~~~~i~g~-------~~~~l~p~~r~~~~~~~~~l~e~~~~~vvfLVDtSgS 146 (242)
T 3rag_A 75 -QPADISATAQMMTHQTMQMTLQQVVNQELLAVMGK-------STEDLPPADRARVMQVVEKLEDEVALHLVVCLDTSAS 146 (242)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------CGGGSCHHHHHHHHHHHHHHHHHSCEEEEEEEECSGG
T ss_pred -eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------ccccCCcchhcchhhhhhhhcccCCCCEEEEEECccc
Confidence 5666554422111 00010 1222222221 11 55688889999999
Q ss_pred ccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 215 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 215 ~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
|. + ||++=.+|+.-+..+-.....++.|||++++|+
T Consensus 147 M~-----~-kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 147 MR-----D-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp GT-----T-THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred HH-----H-HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 96 2 798888887666554333345899999999874
No 28
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=97.76 E-value=0.00013 Score=74.36 Aligned_cols=120 Identities=22% Similarity=0.241 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceE------------------------------EEcC---------
Q psy14666 9 TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------------LATL--------- 49 (256)
Q Consensus 9 nRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~v------------------------------l~~l--------- 49 (256)
.++++.++++..+++. ..|...||||+|.+...+ +..+
T Consensus 146 ~~l~~l~~si~~~L~~---Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~ml~v~d~~~~~~~~~~ 222 (769)
T 2nut_A 146 EDLQALKESMQMSLSL---LPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGP 222 (769)
T ss_dssp HHHHHHHHHHHHHHTT---SCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHh---CCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHHhCCCCcccccccccc
Confidence 3688888999888864 556679999999875433 1100
Q ss_pred ---------------CCCHHHHHHhhcccCC---------CCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCC
Q psy14666 50 ---------------TSDVGRILSKLHQVQP---------NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 105 (256)
Q Consensus 50 ---------------T~d~~~il~aL~~l~~---------~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D 105 (256)
+.....+.+.|+.|.. .+...++.||+.|...|+..- .+.+.||++|.+|+-+..
T Consensus 223 ~~~f~~p~~~~lv~~~e~~~~i~~lLe~L~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~-~~~GGrI~~F~sg~pt~G 301 (769)
T 2nut_A 223 QVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTF-PNTGARIMMFIGGPATQG 301 (769)
T ss_dssp ------CCCSSSEEHHHHHHHHHHHHHHCCCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHS-CSSCCEEEEEESSCCCSS
T ss_pred cccCCCcccceeeeHHHHHHHHHHHHHhcccccccccCCCCCccchHHHHHHHHHHHhhcc-cCCCcEEEEEeCCCCCCC
Confidence 0111223344444433 567899999999999998531 135779999999876532
Q ss_pred hHH------------------------------HHHHHHHHHhcCceEEEEEecCCc
Q psy14666 106 ERE------------------------------LTKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 106 ~~d------------------------------i~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
||. -.++++++.+++|.||+..++...
T Consensus 302 pG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~ 358 (769)
T 2nut_A 302 PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQ 358 (769)
T ss_dssp SSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSC
T ss_pred CCCCcCcccccccccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCc
Confidence 221 134899999999999999999764
No 29
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.69 E-value=5e-05 Score=73.85 Aligned_cols=119 Identities=12% Similarity=0.171 Sum_probs=74.5
Q ss_pred CCCCCCCCCHHHHHHHH--HHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCH--HHHHHhhcccCCCCcccHHHHHH
Q psy14666 1 MRNGDFLPTRLQAQQDA--VNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDV--GRILSKLHQVQPNGNINFMTGIR 76 (256)
Q Consensus 1 M~n~D~~PnRL~aq~~a--~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~--~~il~aL~~l~~~G~~sl~naL~ 76 (256)
|..+|.. +|+.+ +++ +-.|+. ..+..+||||+|.+. ...++++.+. ...+..|..+ ++|.+++..+|.
T Consensus 381 M~~~~~~-~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~-~~~~~~t~~~~l~~~l~~l~~~-~~GgT~i~~aL~ 452 (538)
T 1yvr_A 381 MNQRVLG-SILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDE-MLPCPITVNMLLHEVVEKMSDI-TMGSTDCALPML 452 (538)
T ss_dssp GGSBSTT-SSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSS-EECCSCCTTSCHHHHHHHHTTC-CCSCCCTTHHHH
T ss_pred cCCCCCC-CcHHH-HHHHHHHHHHH----hccCCceEEEEECCC-ceEcCCCCcccHHHHHHHHhcC-CCCCCcHHHHHH
Confidence 4455554 56666 443 444443 345678999999873 3345666543 3334444433 688999999999
Q ss_pred HHHHHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhc-C--ceEEEEEecCCcc
Q psy14666 77 IAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-K--VNVDIVSFGEERE 133 (256)
Q Consensus 77 ~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~-n--I~V~vI~fGae~~ 133 (256)
.|... . .....|||++|+..+.+..++.+.++++++. | |++.+|++|....
T Consensus 453 ~a~~~----~--~~~~~iIliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~ 506 (538)
T 1yvr_A 453 WAQKT----N--TAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGF 506 (538)
T ss_dssp HHHHT----T--CCCSEEEEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSE
T ss_pred HHHhc----c--CCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCCC
Confidence 98754 1 2346899999986553333455666666544 5 5558999997644
No 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.66 E-value=2.2e-05 Score=76.96 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=51.3
Q ss_pred eeeEeeecCCCcccCCCC-CcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~-~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
.++|+++|.|++|+++|+ -||||+++.++++.+++.|+.++|+..|||+.+|++
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccC
Confidence 678999999999999998 899999999999999999999999999999999874
No 31
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.45 E-value=0.00032 Score=72.65 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceE---------------------------------------EEcC
Q psy14666 9 TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV---------------------------------------LATL 49 (256)
Q Consensus 9 nRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~v---------------------------------------l~~l 49 (256)
+||+.+++|++.|++ ++..+|..+||||+|++.+.. ..+|
T Consensus 246 ~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~w~~~~t~~t~~~~~~~~lpL 324 (893)
T 2ww8_A 246 RRAERAGEATRSLID-KITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLFWNYDQTSFTTNTKDYSYLKL 324 (893)
T ss_dssp CHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTTSCTTCCEEEEECCBCCEEEE
T ss_pred hHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 499999999999995 555678899999999975421 1356
Q ss_pred CCCHHHH---HHhhcc----------cCCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCC
Q psy14666 50 TSDVGRI---LSKLHQ----------VQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPV 102 (256)
Q Consensus 50 T~d~~~i---l~aL~~----------l~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l 102 (256)
|.|...+ ...|.. +.+.|.+.++.||..|...|+.......++.|||+.+|.-
T Consensus 325 T~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~~~~~~~kvIILLTDG~p 390 (893)
T 2ww8_A 325 TNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVP 390 (893)
T ss_dssp ECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHHSCSSSEEEEEEEESSCC
T ss_pred cCCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhhcccCCCeEEEEEcCCCC
Confidence 7777444 366654 3347899999999999999974211245667777777743
No 32
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=97.17 E-value=0.0023 Score=65.57 Aligned_cols=117 Identities=14% Similarity=0.170 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEE------------------------------------EcCCCCHH
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVL------------------------------------ATLTSDVG 54 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl------------------------------------~~lT~d~~ 54 (256)
+++.++++..-++..=+.+|...||||+|.+...+. +++.....
T Consensus 206 l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~d~f~P~~~~~Lv~l~e~~~ 285 (810)
T 1pcx_A 206 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ 285 (810)
T ss_dssp HHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTTCC-----TTTSEETTTTHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccccccCCCcccccccHHHHHH
Confidence 556667766666432222335799999997743322 11222233
Q ss_pred HHHHhhccc------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHH--------------------
Q psy14666 55 RILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERE-------------------- 108 (256)
Q Consensus 55 ~il~aL~~l------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~d-------------------- 108 (256)
.+...|+.+ ...++..++.||+.|...|+. .+.||++|.+|+-+..||.
T Consensus 286 ~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-----~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~ 360 (810)
T 1pcx_A 286 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLL 360 (810)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSSTTCCCC-----------------
T ss_pred HHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-----cCCEEEEEecCCCCCCCCcccccccccccCcccchhhhc
Confidence 333444433 236789999999999999984 3569999999875532221
Q ss_pred ------HHHHHHHHHhcCceEEEEEecCCc
Q psy14666 109 ------LTKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 109 ------i~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
-.++++++.+++|.||+..++...
T Consensus 361 ~~a~~fY~~la~~~~~~gi~VDlF~~s~~~ 390 (810)
T 1pcx_A 361 SCQDSFYKNFTIDCSKVQITVDLFLASEDY 390 (810)
T ss_dssp ---CCHHHHHHHHHHHTTEEEEEEEEESSC
T ss_pred ccchHHHHHHHHHHHHCCeEEEEEEccCCc
Confidence 135789999999999999999763
No 33
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=96.97 E-value=0.006 Score=63.50 Aligned_cols=117 Identities=14% Similarity=0.166 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCcceE------------------------------------EEcCCCCHH
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEV------------------------------------LATLTSDVG 54 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~v------------------------------------l~~lT~d~~ 54 (256)
+++.++++...++..=+.+|...||||+|.+...+ ++++.....
T Consensus 322 l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~d~f~P~~~~~Lv~l~e~~~ 401 (926)
T 1m2v_B 322 LATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQ 401 (926)
T ss_dssp HHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCSSCCCSCSSSSSEETTTTHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccccccccCCCcccccccHHHHHH
Confidence 55666666666543222223479999999763322 112233344
Q ss_pred HHHHhhccc------CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChH----------------H----
Q psy14666 55 RILSKLHQV------QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER----------------E---- 108 (256)
Q Consensus 55 ~il~aL~~l------~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~----------------d---- 108 (256)
.+...|+.| ....+..++.||+.|...|+. .+.||++|.+|+-+..+| .
T Consensus 402 ~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-----~GGrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll 476 (926)
T 1m2v_B 402 NIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-----VGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLL 476 (926)
T ss_dssp HHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-----TCEEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHT
T ss_pred HHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-----hCCEEEEEecCCCCCCCCcccccccccccCcccchhhhc
Confidence 444444443 235789999999999999985 366999999987542222 1
Q ss_pred ------HHHHHHHHHhcCceEEEEEecCCc
Q psy14666 109 ------LTKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 109 ------i~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
-.++++++.+++|.||+..++..-
T Consensus 477 ~~a~~FYk~LA~~~~~~gisVDlF~~s~~~ 506 (926)
T 1m2v_B 477 SCQDSFYKNFTIDCSKVQITVDLFLASEDY 506 (926)
T ss_dssp SCSSTHHHHHHHHHHHHTEEEEEEEEESSC
T ss_pred cchHHHHHHHHHHHHHcCeEEEEEEccCCC
Confidence 146799999999999999999763
No 34
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=96.86 E-value=0.014 Score=59.39 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=64.8
Q ss_pred CCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChH---------------HH---------------HHHHHH
Q psy14666 66 NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEER---------------EL---------------TKLAKR 115 (256)
Q Consensus 66 ~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~---------------di---------------~~~~k~ 115 (256)
..+..++.||++|...|+..- .+.+.||++|.+|+-+..|| |+ .+++++
T Consensus 257 ~~~~~~G~Al~~A~~ll~~~~-~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~ 335 (768)
T 1m2o_A 257 RPLRATGSALNIASLLLQGCY-KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQR 335 (768)
T ss_dssp CCCCCHHHHHHHHHHHHHHHC-TTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhhcc-CCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHHHH
Confidence 355789999999999998531 13577999999987652111 11 357889
Q ss_pred HHhcCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhccccC
Q psy14666 116 LKKEKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILT 177 (256)
Q Consensus 116 lkk~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~~~~~ 177 (256)
+.+++|.||+..++...- .-+.|++.| +|..+ |.-..+.+.|++-+...+.
T Consensus 336 ~~~~gi~VDlF~~~~~~~dla~l~~l~~~T-------GG~v~----~y~~f~~~~~~~~l~r~l~ 389 (768)
T 1m2o_A 336 VAANGHTVDIFAGCYDQIGMSEMKQLTDST-------GGVLL----LTDAFSTAIFKQSYLRLFA 389 (768)
T ss_dssp HHHHTCEEEEEEECSSCCSHHHHHHHHHHH-------TCCEE----EESCTTSHHHHHHHHHTTC
T ss_pred HHHCCeEEEEEEccCCccChHHHhhHhhcC-------CceEE----EcCCCchHHHHHHHHHHHh
Confidence 999999999999997543 234444443 22222 2233444556666665554
No 35
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.76 E-value=0.0025 Score=56.83 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHHhhhcCCcccceeeeeecCc---ceEE-EcCCCCHHHHHHhhcccCCCCcccHHHHHHHHHHHhc
Q psy14666 9 TRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS---VEVL-ATLTSDVGRILSKLHQVQPNGNINFMTGIRIAHLALK 83 (256)
Q Consensus 9 nRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~---a~vl-~~lT~d~~~il~aL~~l~~~G~~sl~naL~~A~~aLk 83 (256)
.||.+.++++..++..+.......+||||+|++. +.++ .++|.+. .+...+..+..+|.+.++.||..|...++
T Consensus 149 ~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~-~~~~~l~~L~agG~Tplg~AL~~A~~~~~ 226 (242)
T 3rag_A 149 DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEV-NVAALEAELVARGGTPTGPAIDHAADLLL 226 (242)
T ss_dssp TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSC-CHHHHHHHCCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChH-HHHHHHhhCCCCCCCcHHHHHHHHHHHHH
Confidence 3899999999999987665556889999999985 4444 4999988 77778888889999999999999988873
No 36
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=96.70 E-value=0.0047 Score=62.94 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=72.0
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcC-CCCCChH------------------------HH-HHHHHHHHh
Q psy14666 65 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDLEER------------------------EL-TKLAKRLKK 118 (256)
Q Consensus 65 ~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS-~l~~D~~------------------------di-~~~~k~lkk 118 (256)
...++.++.||+.|..+|+.. +.+.||++|.+| |.+..|| +- .++++++.+
T Consensus 285 ~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~ 361 (766)
T 3eh2_A 285 RETETVFVPVIQAGMEALKAA---ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVA 361 (766)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT---TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHh
Confidence 446678999999999999864 357899999988 6532221 12 468999999
Q ss_pred cCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhccccC
Q psy14666 119 EKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILT 177 (256)
Q Consensus 119 ~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~~~~~ 177 (256)
++|.||+..++...- .-+.|++.| +|..++.-.|....|...|..-|..++.
T Consensus 362 ~~i~VDlF~~s~~~vdlatl~~l~~~T-------GG~v~~y~~F~~~~d~~~f~~dl~~~l~ 416 (766)
T 3eh2_A 362 QGCCVDLFLFPNQYVDVATLSVVPQLT-------GGSVYKYASFQVENDQERFLSDLRRDVQ 416 (766)
T ss_dssp HTEEEEEEECCSSCCCHHHHTHHHHHT-------TCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCcChHHHHHHHhhc-------CceEEEeCCCcchhHHHHHHHHHHHHhh
Confidence 999999999987532 234444433 4555555556666777777777776664
No 37
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=96.54 E-value=0.015 Score=56.53 Aligned_cols=112 Identities=11% Similarity=0.044 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCcccceeeeeecCcceEEEcCCCCHHHHHHhhcccC--CCCcccHHHHHHHHHHHhcc
Q psy14666 7 LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQVQ--PNGNINFMTGIRIAHLALKH 84 (256)
Q Consensus 7 ~PnRL~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a~vl~~lT~d~~~il~aL~~l~--~~G~~sl~naL~~A~~aLkh 84 (256)
++++++++...+ |+.. ..| .++||++|++... ..+++.+ ..+.+.|+.+. +.|.+++..+|+.+....
T Consensus 385 k~~~~e~Aa~la--~~~~--r~~--d~v~lv~Fs~~~~-~~~~~~~-~~l~~~l~~l~~~~~ggTdi~~~l~~a~~~~-- 454 (535)
T 2nvo_A 385 GLTPNMAAAAMS--LIAL--RTE--PDALTMGFAEQFR-PLGITPR-DTLESAMQKAQSVSFGGTDCAQPILWAAQER-- 454 (535)
T ss_dssp TCCHHHHHHHHH--HHHH--HHS--SEEEEEEEBSSEE-ECCCCTT-CCHHHHHHHTCCSSBCCCCTTHHHHHHHHTT--
T ss_pred cccHHHHHHHHH--HHHc--CcC--CceEEEEECCcce-EcCCCcc-hhHHHHHHHHhhCCCCCccHHHHHHHHHHhc--
Confidence 367777665433 3321 233 3899999988432 2355544 33445555543 368999999987764332
Q ss_pred cCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhc---CceEEEEEecCCc
Q psy14666 85 RQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE---KVNVDIVSFGEER 132 (256)
Q Consensus 85 ~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~---nI~V~vI~fGae~ 132 (256)
....++|||+++....+..++.+.+++.++. ++++.+|++|...
T Consensus 455 ----~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 455 ----LDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTATE 501 (535)
T ss_dssp ----CCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCSC
T ss_pred ----CCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCCC
Confidence 2345899999886554333455666777765 8999999999864
No 38
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=96.42 E-value=0.032 Score=56.79 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=48.8
Q ss_pred CcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHH-------------------------HHHHHHHHHhcCc
Q psy14666 67 GNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERE-------------------------LTKLAKRLKKEKV 121 (256)
Q Consensus 67 G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~d-------------------------i~~~~k~lkk~nI 121 (256)
-+..++.||+.|...|+. .+.||++|.+|+-+..||. -.++++++.+++|
T Consensus 269 ~~~~~G~AL~aA~~ll~~-----~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i 343 (751)
T 3eh1_A 269 THSALGPALQAAFKLMSP-----TGGRVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQT 343 (751)
T ss_dssp CCCCHHHHHHHHHHHHTT-----TCEEEEEEECSCCCSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTE
T ss_pred CccchHHHHHHHHHHhhc-----CCCEEEEEecCCCCCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHHhcCc
Confidence 457899999999999974 4679999999866533331 1468999999999
Q ss_pred eEEEEEecCCc
Q psy14666 122 NVDIVSFGEER 132 (256)
Q Consensus 122 ~V~vI~fGae~ 132 (256)
.||+..++.+-
T Consensus 344 ~VDlF~~s~~~ 354 (751)
T 3eh1_A 344 AVDLFLLSSQY 354 (751)
T ss_dssp EEEEEECCSSC
T ss_pred eEEEEEccCcc
Confidence 99999998653
No 39
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=96.27 E-value=0.0071 Score=61.66 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=68.7
Q ss_pred CCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcC-CCCCChH------------------------HH-HHHHHHHHh
Q psy14666 65 PNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDLEER------------------------EL-TKLAKRLKK 118 (256)
Q Consensus 65 ~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS-~l~~D~~------------------------di-~~~~k~lkk 118 (256)
...++.++.||+.|..+|+.. +.+.||++|.+| |.+..|| +- .++++++.+
T Consensus 289 ~~~~t~~g~al~aa~~~l~~~---~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~ 365 (770)
T 3efo_B 289 NENETVFAPVIQAGMEALKAA---DCPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVA 365 (770)
T ss_dssp CCCCCCCHHHHHHHHHHHHHH---TCCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHhccC---CCCcEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHH
Confidence 345677899999999999864 257799999988 6532222 12 358999999
Q ss_pred cCceEEEEEecCCcc---cccchhHHHHhhhCCCCCCccccceeeeeecccchhhhhcccc
Q psy14666 119 EKVNVDIVSFGEERE---GGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSIL 176 (256)
Q Consensus 119 ~nI~V~vI~fGae~~---i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~l~~~~ 176 (256)
++|.||+..++..-- .-+.|++.| +|..++--.|....|...|..-+..++
T Consensus 366 ~~i~VDlF~~s~~~vdlatl~~l~~~T-------GG~v~~y~~F~~~~~~~~f~~dl~~~l 419 (770)
T 3efo_B 366 HGCSVTLFLFPSQYVDVASLGLVPQLT-------GGTLYKYNNFQMHLDRQQFLNDLRNDI 419 (770)
T ss_dssp TTEEEEEEECCSSCCCHHHHTHHHHHT-------TCCEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEEecCCccChHHHHHHHhhc-------CceEEEecCCcchhHHHHHHHHHHHhh
Confidence 999999999987532 233444433 344555444555566676665555554
No 40
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=95.37 E-value=0.16 Score=44.09 Aligned_cols=127 Identities=12% Similarity=0.166 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhhhcCCcccceeeeeecCc-ceEEEcCCCCHHHHHHhhcccCCCCccc----HHHHHHHHHHH---h
Q psy14666 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSKLHQVQPNGNIN----FMTGIRIAHLA---L 82 (256)
Q Consensus 11 L~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~-a~vl~~lT~d~~~il~aL~~l~~~G~~s----l~naL~~A~~a---L 82 (256)
++..++.+..++++.-+.+...++|++++.++ .....++|.|.....+.++++..+|..+ -..||..|... +
T Consensus 20 i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i 99 (212)
T 2iue_A 20 LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMTFQHILKLTADSSQFQRELRKQLVSGKLATPKGQLDAVVQVAICLGEI 99 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSCEEEEEEEESCHHHHHHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCcceecCCcCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHHHhhhhc
Confidence 66677777877776655566679999999995 6668899999999999999987665322 22244443322 2
Q ss_pred cccCCCCCceEEEEEE-cCCC-CC-Ch----------------------------HHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 83 KHRQGKNHKMRIIAFV-GSPV-DL-EE----------------------------RELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 83 kh~p~~~~~~rIVlfv-gS~l-~~-D~----------------------------~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.-|+ ..|+|||+ +++. .. |+ ..+.++.++|+++||.+-..-=...
T Consensus 100 ~Wr~----a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt~~~ 175 (212)
T 2iue_A 100 GWRN----GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVPSRM 175 (212)
T ss_dssp TCCS----SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEEHHH
T ss_pred ccCC----ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCcccCCCCHHHHHHHHHhcCCcEEEEEccch
Confidence 2343 45777766 4432 21 32 3677899999999997655554444
Q ss_pred cccccchhHH
Q psy14666 132 REGGKGQDEE 141 (256)
Q Consensus 132 ~~i~k~l~~~ 141 (256)
...++.|.+.
T Consensus 176 ~~~Y~~l~~~ 185 (212)
T 2iue_A 176 VKTYEKLTTF 185 (212)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5556666654
No 41
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=94.37 E-value=0.026 Score=55.77 Aligned_cols=54 Identities=17% Similarity=0.069 Sum_probs=49.9
Q ss_pred eeeEeeecCCCcccCCC--CCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGD--FLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~--~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
.++|+++|.|+.|...| .-||||++..+++.-+.+.|.-++|...|||+.+|++
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~ 91 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTE 91 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCS
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccC
Confidence 57999999999999988 4799999999999999999999999999999999864
No 42
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=93.25 E-value=0.1 Score=43.08 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=41.8
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
.-.++++|.|..|...|+-|+||+.-.+++..+.... |...|||++++++
T Consensus 12 ~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~----~~~~v~lv~F~~~ 61 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL----DNDKVGMIVFAGD 61 (218)
T ss_dssp CEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTC----SSCEEEEEEESSS
T ss_pred CcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhC----CCCeEEEEEECCC
Confidence 3567789999999999999999999888888777553 4779999998763
No 43
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=92.98 E-value=0.88 Score=45.88 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhhcCCcccceeeeeecCcc------------------------------eEEEcCCCCHHHHHHhhcccC
Q psy14666 15 QDAVNLVCHSKTRSNPENNVGLLAMADSV------------------------------EVLATLTSDVGRILSKLHQVQ 64 (256)
Q Consensus 15 ~~a~~~fv~~~f~qNP~sqVGIVt~~~~a------------------------------~vl~~lT~d~~~il~aL~~l~ 64 (256)
+..+..|+++.-+.....++|+.+|.+++ ....+||.|..+..+.++++.
T Consensus 132 k~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~ 211 (690)
T 3fcs_B 132 QNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQS 211 (690)
T ss_dssp TTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceeecccCCCHHHHHHHhhcee
Confidence 33444454443333344699999998821 135789999999999999887
Q ss_pred CCCccc----HHHHHHHHH---HHhcccCCCCCceEEEEEE-cCCCC--CCh----------------------------
Q psy14666 65 PNGNIN----FMTGIRIAH---LALKHRQGKNHKMRIIAFV-GSPVD--LEE---------------------------- 106 (256)
Q Consensus 65 ~~G~~s----l~naL~~A~---~aLkh~p~~~~~~rIVlfv-gS~l~--~D~---------------------------- 106 (256)
..|..+ -..||..|. .-+--|+ ...|+|||+ +++.- .|.
T Consensus 212 isgn~D~PE~g~dAl~qa~~c~~~igWr~---~a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl~~~~~y~~s~~~D 288 (690)
T 3fcs_B 212 VSRNRDAPEGGFDAIMQATVCDEKIGWRN---DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTMD 288 (690)
T ss_dssp CCCCSSSSBCHHHHHHHHHHCHHHHTCCS---SSEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCBCTTCBBGGGGTSC
T ss_pred ccCCCCCCchHHHHHHHHhhcccccCCCC---CceEEEEEECCCccccCCCccccceecCCCcceeecCCCccccccccC
Confidence 766533 233443333 2232353 345666666 44322 122
Q ss_pred -HHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 107 -RELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 107 -~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
-.+-++.++|.++||.+-+........+++.|.++.
T Consensus 289 ypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i 325 (690)
T 3fcs_B 289 YPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI 325 (690)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhc
Confidence 137889999999999877777776677788777654
No 44
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=91.01 E-value=0.17 Score=51.05 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=76.3
Q ss_pred HHHHHHhhhcCCcccceeeeeecCc-----------------------------ceEEEcCCCCHHHHHHhhcccCCCCc
Q psy14666 18 VNLVCHSKTRSNPENNVGLLAMADS-----------------------------VEVLATLTSDVGRILSKLHQVQPNGN 68 (256)
Q Consensus 18 ~~~fv~~~f~qNP~sqVGIVt~~~~-----------------------------a~vl~~lT~d~~~il~aL~~l~~~G~ 68 (256)
+..|+++.-+.....++|+.+|.++ .....+||.|..+..+.++++..+|.
T Consensus 128 ~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~l~lt~~~~~F~~~v~~~~isgn 207 (687)
T 3k6s_B 128 GGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKLTNNSNQFQTEVGKQLISGN 207 (687)
T ss_dssp CTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEEEEEESCSHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceeecccCCCHHHHHHHHhhccccCC
Confidence 3344444333444569999999872 12367899999999999998877665
Q ss_pred ccHHH-HHHHHHHHh------cccCCCCCceEEEEEE-cCCCC--CCh----------------------------HHHH
Q psy14666 69 INFMT-GIRIAHLAL------KHRQGKNHKMRIIAFV-GSPVD--LEE----------------------------RELT 110 (256)
Q Consensus 69 ~sl~n-aL~~A~~aL------kh~p~~~~~~rIVlfv-gS~l~--~D~----------------------------~di~ 110 (256)
.+.-. +++..++|+ --| . ..|+|||+ +++.- .|. -.+-
T Consensus 208 ~D~PE~g~dAl~qa~vc~~~igWr---~-a~rllV~~TDa~~H~agDg~l~gi~~pndg~Chl~~~~y~~s~~~DyPS~~ 283 (687)
T 3k6s_B 208 LDAPEGGLDAMMQVAACPEEIGWR---N-VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVG 283 (687)
T ss_dssp SSSSCCHHHHHHHHTTCHHHHCCC---S-SCCEEEEECSSCCCCTTGGGGGTCCCCCCSCCCCSSSBCSSGGGSCCCCGG
T ss_pred CCCCchHHHHHHHHhhcccccCCc---c-ceEEEEEECCCccccCCCccccceecCCCCccccCCCccccccccCCCCHH
Confidence 33222 233333333 234 2 44677766 44321 121 1367
Q ss_pred HHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 111 KLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 111 ~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
++.++|+++||.+-+...+....+++.|.++.
T Consensus 284 ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i 315 (687)
T 3k6s_B 284 QLAHKLAENNIQPIFAVTSRMVKTYEKLTEII 315 (687)
T ss_dssp GHHHHHHHTTCBCCEEECGGGHHHHHHHHHHS
T ss_pred HHHHHHHHcCCeEEEEEeccchhhHHHHHhhc
Confidence 78999999999887777777777787777654
No 45
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=78.69 E-value=27 Score=33.58 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhhcCCcccceeeeeecCcc----------------------------eEEEcCCCCHHHHHHhhcccCC
Q psy14666 14 QQDAVNLVCHSKTRSNPENNVGLLAMADSV----------------------------EVLATLTSDVGRILSKLHQVQP 65 (256)
Q Consensus 14 q~~a~~~fv~~~f~qNP~sqVGIVt~~~~a----------------------------~vl~~lT~d~~~il~aL~~l~~ 65 (256)
.+.....++++--+.-...++|+.+|.+++ ..+.+||.|.....+.++++..
T Consensus 142 lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~i 221 (454)
T 3vi3_B 142 VKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLTNKGEVFNELVGKQRI 221 (454)
T ss_dssp HTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcceeeeeecCCCHHHHHHHHhhccc
Confidence 344455566554444555699999998741 1378899999999999999877
Q ss_pred CCcccH----HHHHHHHHHH---hcccCCCCCceEEEEEE-cCCCC--CC----------------------------hH
Q psy14666 66 NGNINF----MTGIRIAHLA---LKHRQGKNHKMRIIAFV-GSPVD--LE----------------------------ER 107 (256)
Q Consensus 66 ~G~~sl----~naL~~A~~a---Lkh~p~~~~~~rIVlfv-gS~l~--~D----------------------------~~ 107 (256)
+|..+. ..||..|..- +.-| . ..|+|||+ +++.- .| =-
T Consensus 222 sGn~D~PEgg~DAl~Qaavc~~~igWR---~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~~~Yt~s~~~DYP 297 (454)
T 3vi3_B 222 SGNLDSPEGGFDAIMQVAVCGSLIGWR---N-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLENNMYTMSHYYDYP 297 (454)
T ss_dssp CCCSSSSBCHHHHHHHHHHCHHHHTCC---S-SEEEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEETTEECCTTTSCCC
T ss_pred cCCCcCCchhHHHHHHHhccccccCCc---c-ceEEEEEECCCCcCcCCCccccceecCCCCccEeCCCcccccccCCCC
Confidence 665332 2333333221 2224 3 55777776 33211 12 22
Q ss_pred HHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 108 ELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 108 di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
.+-.+.++|.++||.+=.---.....+++.|.++.
T Consensus 298 Sv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~i 332 (454)
T 3vi3_B 298 SIAHLVQKLSENNIQTIFAVTEEFQPVYKELKNLI 332 (454)
T ss_dssp CHHHHHHHHHHTTEEEEEEEEGGGHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCcEEEEEcCccchHHHHHHHhC
Confidence 58889999999999653333333445667776653
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=76.15 E-value=11 Score=36.40 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhcCCcccceeeeeecCcc------------------------------eEEEcCCCCHHHHHHhhccc
Q psy14666 14 QQDAVNLVCHSKTRSNPENNVGLLAMADSV------------------------------EVLATLTSDVGRILSKLHQV 63 (256)
Q Consensus 14 q~~a~~~fv~~~f~qNP~sqVGIVt~~~~a------------------------------~vl~~lT~d~~~il~aL~~l 63 (256)
.+.....+.++.-+.....++|+.+|.+++ ....+||.|.....++++++
T Consensus 131 lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~ 210 (472)
T 3t3p_B 131 IQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQ 210 (472)
T ss_dssp TTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEEEEEESCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEeeccCCCHHHHHHHHhhc
Confidence 344555666655455556699999998741 12678999999999999988
Q ss_pred CCCCcccH----HHHHHHHHH---HhcccCCCCCceEEEEEE-cCCCC--C-----------------------------
Q psy14666 64 QPNGNINF----MTGIRIAHL---ALKHRQGKNHKMRIIAFV-GSPVD--L----------------------------- 104 (256)
Q Consensus 64 ~~~G~~sl----~naL~~A~~---aLkh~p~~~~~~rIVlfv-gS~l~--~----------------------------- 104 (256)
..+|..+. ..||..|.. -+.-|+ ...|+|||+ +++.- .
T Consensus 211 ~iSGn~D~PEgg~dAl~qaavC~~~igWR~---~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~~~~Y~~s~~~ 287 (472)
T 3t3p_B 211 SVSRNRDAPEGGFDAIMQATVCDEKIGWRN---DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGSDNHYSASTTM 287 (472)
T ss_dssp CCCCCSSSSBCHHHHHHHHHHCHHHHTCCS---SSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCTTCBBTTTTTS
T ss_pred cccCCCCCCchHHHHHHHHhcchhhcCCCC---CceEEEEEECCCCcCcCCCccccceecCCCCceEECCCCcccccccC
Confidence 77665332 334433332 223343 345777776 33211 1
Q ss_pred ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHH
Q psy14666 105 EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEE 141 (256)
Q Consensus 105 D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~ 141 (256)
|=-.+-.+.++|.++||.+=.---.....++++|.++
T Consensus 288 DYPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L~~~ 324 (472)
T 3t3p_B 288 DYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSEL 324 (472)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcCccEEEEEeccchhHHHHHHHh
Confidence 2225788999999999855333333334556666654
No 47
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=69.36 E-value=8.9 Score=31.26 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=35.1
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~ 255 (256)
.-.++.+|.|..|. +.+|+...+++.-+...-.-..+..+|||+++++
T Consensus 14 ~divfvlD~SgSm~-----~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~ 61 (202)
T 1ijb_A 14 LDLVFLLDGSSRLS-----EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHD 61 (202)
T ss_dssp EEEEEEEECBTTSC-----HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESS
T ss_pred ccEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECC
Confidence 45566799998885 3689988888877766433333456899999876
No 48
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=64.83 E-value=5.8 Score=31.64 Aligned_cols=49 Identities=8% Similarity=0.078 Sum_probs=35.5
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
.-.++.+|.|..|. +++|+...+++.-+...=....+..+|||++++++
T Consensus 18 ~divfvlD~SgSm~-----~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~ 66 (178)
T 2xgg_A 18 LDICFLIDSSGSIG-----IQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTD 66 (178)
T ss_dssp EEEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSS
T ss_pred eeEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCc
Confidence 45667899998885 46899988888777654322234578999998763
No 49
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=62.27 E-value=3.7 Score=25.46 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHhcCceEEE
Q psy14666 105 EERELTKLAKRLKKEKVNVDI 125 (256)
Q Consensus 105 D~~di~~~~k~lkk~nI~V~v 125 (256)
.|+++.++-+.+||.||||..
T Consensus 13 tpeelkklkeeakkanirvtf 33 (36)
T 2ki0_A 13 TPEELKKLKEEAKKANIRVTF 33 (36)
T ss_dssp CHHHHHHHHHHHHHHCCCCCB
T ss_pred CHHHHHHHHHHHHhccEEEEe
Confidence 799999999999999999864
No 50
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=61.77 E-value=66 Score=31.26 Aligned_cols=126 Identities=12% Similarity=0.129 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhhhcCCcccceeeeeecCcc-----------------------------eEEEcCCCCHHHHHHhhcc
Q psy14666 12 QAQQDAVNLVCHSKTRSNPENNVGLLAMADSV-----------------------------EVLATLTSDVGRILSKLHQ 62 (256)
Q Consensus 12 ~aq~~a~~~fv~~~f~qNP~sqVGIVt~~~~a-----------------------------~vl~~lT~d~~~il~aL~~ 62 (256)
+-.+.....+.++.-+.....++|+.+|.+++ ..+.+||.|..+..+.+++
T Consensus 150 ~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~ 229 (503)
T 3v4v_B 150 ERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHVLSLTGDAQAFEREVGR 229 (503)
T ss_dssp HHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcceEEEEEecCCHHHHHHHHhh
Confidence 34445555666655445555699999998731 1267899999999999998
Q ss_pred cCCCCcccH----HHHHHHHHH---HhcccCCCCCceEEEEEE-cCCCC--C----------------------------
Q psy14666 63 VQPNGNINF----MTGIRIAHL---ALKHRQGKNHKMRIIAFV-GSPVD--L---------------------------- 104 (256)
Q Consensus 63 l~~~G~~sl----~naL~~A~~---aLkh~p~~~~~~rIVlfv-gS~l~--~---------------------------- 104 (256)
+..+|..+. ..||..|.. -+.-|+ ..|+|||+ +++.- .
T Consensus 230 ~~iSGnlD~PEggfDAlmQaavC~~~IgWR~----a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~~~~Yt~s~~ 305 (503)
T 3v4v_B 230 QSVSGNLDSPEGGFDAILQAALCQEQIGWRN----VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTE 305 (503)
T ss_dssp CCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS----SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCTTSBBGGGGG
T ss_pred cCccCCCCCCchHHHHHHHHhhcccccCCCc----ceEEEEEECCCCcCcCCCccccceecCCCCCeEECCCCccccccc
Confidence 877665333 233333332 222343 34777776 33211 1
Q ss_pred -ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHH
Q psy14666 105 -EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEE 141 (256)
Q Consensus 105 -D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~ 141 (256)
|=-.+-.+.++|.++||.+=.---.....++++|.++
T Consensus 306 ~DYPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~~L~~~ 343 (503)
T 3v4v_B 306 FDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSKL 343 (503)
T ss_dssp SCCCCHHHHHHHHHHHTEEEEEEECSSSHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHhcCCeEEEEEcccchhHHHHHHHh
Confidence 1124678999999999944322222334556666553
No 51
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=61.13 E-value=11 Score=31.11 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=35.2
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
.-.++.+|.|..|.+ |+...+++.-+...-.-..+..+|||+++++.
T Consensus 23 ~div~vlD~SgSM~~-------~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~ 69 (223)
T 2b2x_A 23 LDIVIVLDGSNSIYP-------WESVIAFLNDLLKRMDIGPKQTQVGIVQYGEN 69 (223)
T ss_dssp EEEEEEEECSTTCCC-------HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSS
T ss_pred ceEEEEEECCCChhh-------HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCC
Confidence 456778999999973 78888888776654333467888999998763
No 52
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=58.03 E-value=4.8 Score=32.72 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=35.9
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~ 255 (256)
.-.++.+|.|..|.. ++|+...+++.-+...-...++..+|||+++++
T Consensus 16 ~div~vlD~SgSM~~-----~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~ 63 (223)
T 1q0p_A 16 MNIYLVLDGSDSIGA-----SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYAT 63 (223)
T ss_dssp EEEEEEEECSTTTCH-----HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESS
T ss_pred eeEEEEEeCCCCCch-----HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 355678999988874 458988888887765433445667899999876
No 53
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=52.41 E-value=5.5 Score=41.23 Aligned_cols=53 Identities=26% Similarity=0.282 Sum_probs=39.4
Q ss_pred eeeeEeeecCCCcccCCCCC-cchHHHHHhhHHhHhhccCCCCCCCcceeecccC
Q psy14666 202 MITTSLNVDNSDFMRNGDFL-PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255 (256)
Q Consensus 202 ~~~~~~~~dns~~~~~g~~~-p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~ 255 (256)
+.-.|+.+|.|..|..-++- .+||+...+|+.-+. .....+|+.+|||+++++
T Consensus 224 ~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~l-d~L~~~~~drVgLV~Fs~ 277 (893)
T 2ww8_A 224 PLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLI-DKITSDSENRVALVTYAS 277 (893)
T ss_dssp CEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHH-HHHHTSTTCEEEEEEESS
T ss_pred CccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHH-HHhhcCCCcEEEEEEecC
Confidence 34567889999999875432 249988778877766 344447899999999986
No 54
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=49.21 E-value=45 Score=25.10 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=41.4
Q ss_pred CceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhh
Q psy14666 90 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEV 145 (256)
Q Consensus 90 ~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~ 145 (256)
.++.+|+|+.+. ...|+.+.-..+||++|.-+|.---+......+..++.+..
T Consensus 50 ngkplvvfvnga---sqndvnefqneakkegvsydvlkstdpeeltqrvreflkta 102 (112)
T 2lnd_A 50 NGKPLVVFVNGA---SQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTA 102 (112)
T ss_dssp CCSCEEEEECSC---CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEecCc---ccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhc
Confidence 366899999875 56778888889999999999988777777777777766433
No 55
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=45.11 E-value=21 Score=28.90 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=34.8
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
.=.++.+|.|..|. +.+|+...+++.-+...=.-..+..+|||+++++.
T Consensus 22 ~DivfvlD~S~Sm~-----~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~ 70 (199)
T 3zqk_A 22 LDVAFVLEGSDKIG-----EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYM 70 (199)
T ss_dssp CEEEEEEECCTTTC-----HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSS
T ss_pred cCEEEEEECCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCc
Confidence 34566799998885 46788888887666554333456788999998763
No 56
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=42.79 E-value=42 Score=26.55 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=30.6
Q ss_pred ceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.++++|+.+|+...+..-...+++.+++.++.|.++.+...
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 44 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAA 44 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCc
Confidence 45788888887543555555678889999999999988754
No 57
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=40.20 E-value=29 Score=28.69 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCceEEEEEEcCCCCCC-hH----HHH-HHHHHHHhcCceEEEEEecCCcccccchhH
Q psy14666 89 NHKMRIIAFVGSPVDLE-ER----ELT-KLAKRLKKEKVNVDIVSFGEEREGGKGQDE 140 (256)
Q Consensus 89 ~~~~rIVlfvgS~l~~D-~~----di~-~~~k~lkk~nI~V~vI~fGae~~i~k~l~~ 140 (256)
....+|+++.+||.-.. ++ .+. ..++.+++.+..|.++-+.....+.+.+++
T Consensus 10 ~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~ 67 (204)
T 2amj_A 10 HGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQN 67 (204)
T ss_dssp --CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHH
T ss_pred cCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHH
Confidence 34669999999997321 11 222 345666777999999999875544433333
No 58
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=39.91 E-value=24 Score=33.40 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
...++.+|.|..|. +.++||+.-.+|+..+... ..|...|||+++++.
T Consensus 78 ~dvv~VLD~SGSM~---~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~ 125 (464)
T 4fx5_A 78 NVEVIIIDCSGSMD---YPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEG 125 (464)
T ss_dssp EEEEEEEECCGGGG---TTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSS
T ss_pred ceEEEEEEcCcccC---CCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCc
Confidence 35667799999996 3489999999998877653 237788999998763
No 59
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=39.68 E-value=57 Score=28.43 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=27.2
Q ss_pred CceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEe
Q psy14666 90 HKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 128 (256)
Q Consensus 90 ~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~f 128 (256)
++..++++-||. -.+.|.+.++++|+++|+|=-..+
T Consensus 144 pr~~~lvlags~---mgg~i~~~v~~~~~~~i~vi~l~m 179 (223)
T 1y7p_A 144 HRAEVLVLAGGI---MGGKITEEVKKLRKSGIRVISLSM 179 (223)
T ss_dssp TTEEEEEEESSB---CCTHHHHHHHHHGGGTCEEEEESC
T ss_pred cccceeeEeccc---ccchHHHHHHHHHHCCCeEEEecC
Confidence 466777777775 678899999999999886544433
No 60
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.20A {Homo sapiens}
Probab=38.80 E-value=52 Score=28.69 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=31.6
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.++++|.|.- -+.+|=+.+++.|+..+..|.|+.++.+
T Consensus 86 ~~vlVlcG~G--NNGGDGlv~AR~L~~~G~~V~v~~~~~~ 123 (259)
T 3d3k_A 86 PTVALLCGPH--VKGAQGISCGRHLANHDVQVILFLPNFV 123 (259)
T ss_dssp CEEEEEECSS--HHHHHHHHHHHHHHHTTCEEEEECCBCS
T ss_pred CeEEEEECCC--CCHHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 4788877753 3788999999999999999999988854
No 61
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=38.39 E-value=35 Score=25.95 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=28.1
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
+++|+.+|.......-...+++.+.+.++.|+++.+.+.
T Consensus 3 ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~ 41 (148)
T 3f6r_A 3 KVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADA 41 (148)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTB
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhC
Confidence 677777886433444455678888899999999987753
No 62
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=38.04 E-value=52 Score=27.15 Aligned_cols=45 Identities=9% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCceEEEEEEcCCCCCC-hHHHH-HHHH----HHHhc--CceEEEEEecCCc
Q psy14666 88 KNHKMRIIAFVGSPVDLE-ERELT-KLAK----RLKKE--KVNVDIVSFGEER 132 (256)
Q Consensus 88 ~~~~~rIVlfvgS~l~~D-~~di~-~~~k----~lkk~--nI~V~vI~fGae~ 132 (256)
|++-.+|++|+||+.... -..+. .+++ .+++. ++.+.+|-+++..
T Consensus 8 ~~~~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~ 60 (191)
T 3k1y_A 8 HSHMRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELI 60 (191)
T ss_dssp -CCSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCH
T ss_pred hhhhceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCC
Confidence 456679999999987532 22333 3344 45555 8999999998653
No 63
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein, protein binding; 2.80A {Homo sapiens}
Probab=38.01 E-value=49 Score=29.67 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=31.9
Q ss_pred ceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
..+++|+.|.- -..+|=+.+++.|+..+..|.|+.++.+
T Consensus 132 ~~~vlVlcG~G--NNGGDGlv~AR~L~~~G~~V~V~~~~~~ 170 (306)
T 3d3j_A 132 RPTVALLCGPH--VKGAQGISCGRHLANHDVQVILFLPNFV 170 (306)
T ss_dssp CCEEEEEECSS--HHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCeEEEEECCC--CCHHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 35788777753 2788999999999999999999988854
No 64
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=37.30 E-value=37 Score=26.98 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=28.4
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
+++++.+|+...+..=...+++.+++.++.|+++.+.+.
T Consensus 7 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 45 (200)
T 2a5l_A 7 YILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAV 45 (200)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCE
T ss_pred eEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhc
Confidence 788888997322334444567788888999999998774
No 65
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=36.86 E-value=37 Score=25.74 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecC
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGa 130 (256)
+++++.+|+......-...+++.+...++.|+++.+.+
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~ 39 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAAS 39 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhh
Confidence 67778888743344444456777888899999887764
No 66
>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1
Probab=35.97 E-value=70 Score=27.64 Aligned_cols=38 Identities=13% Similarity=0.008 Sum_probs=31.5
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.+++++.|.- -+.+|=+.+++.|+..+.+|.|+.++.+
T Consensus 59 ~~v~VlcG~G--NNGGDGlv~AR~L~~~G~~V~v~~~~~~ 96 (246)
T 1jzt_A 59 KHVFVIAGPG--NNGGDGLVCARHLKLFGYNPVVFYPKRS 96 (246)
T ss_dssp CEEEEEECSS--HHHHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CeEEEEECCC--CCHHHHHHHHHHHHHCCCeEEEEEcCCC
Confidence 5888877763 2788999999999999999999887754
No 67
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=35.80 E-value=45 Score=26.98 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
++|+++.+|+...+..=...+++.+++.++.|.++-+.+.
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 4888898998322344444567888888999999999875
No 68
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=34.92 E-value=44 Score=26.28 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecC
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGa 130 (256)
+++|+.+|+...+..-...+++.|.+.++.|+++.+..
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 39 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRA 39 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 56777788754344555567888888999998888765
No 69
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=33.25 E-value=39 Score=28.88 Aligned_cols=47 Identities=9% Similarity=-0.005 Sum_probs=32.3
Q ss_pred eeEeeecCCCcccCCCCCcchH-HHHHhhHHhHhhccCCCCCCCcceeecccC
Q psy14666 204 TTSLNVDNSDFMRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255 (256)
Q Consensus 204 ~~~~~~dns~~~~~g~~~p~r~-~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~ 255 (256)
-.++.+|.|..|... .| +...+++.-+...=.......+|||+++++
T Consensus 23 div~vlD~SgSM~~~-----~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~ 70 (281)
T 4hqf_A 23 DLYLLMDGSGSIRRH-----NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSN 70 (281)
T ss_dssp EEEEEEECCCCSSTH-----HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEET
T ss_pred eEEEEEeCCCCcCHH-----HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCC
Confidence 456679999999753 45 666667666655433444567899999875
No 70
>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A
Probab=33.20 E-value=83 Score=27.69 Aligned_cols=37 Identities=14% Similarity=0.001 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecC
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGa 130 (256)
.++++|.|.- -+.+|=+.+++.|+..+..|.|+.++.
T Consensus 80 ~~VlVlcG~G--NNGGDGlv~AR~L~~~G~~V~V~~~~~ 116 (265)
T 2o8n_A 80 PTVLVICGPG--NNGGDGLVCARHLKLFGYQPTIYYPKR 116 (265)
T ss_dssp CEEEEEECSS--HHHHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred CeEEEEECCC--CCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 5888887763 378899999999999999999987765
No 71
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=31.66 E-value=64 Score=27.25 Aligned_cols=42 Identities=7% Similarity=0.104 Sum_probs=31.0
Q ss_pred ceEEEEEEcCCCCCC-hHHH-HHHHHHHHhcCceEEEEEecCCc
Q psy14666 91 KMRIIAFVGSPVDLE-EREL-TKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D-~~di-~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
+++|+++.|||.... -..+ ...++.+++.+..|.++-+.+..
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~ 44 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMN 44 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcC
Confidence 358999999997531 2233 34678888889999999998754
No 72
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=31.32 E-value=58 Score=27.65 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=9.4
Q ss_pred HHHHhcCceEEEEE
Q psy14666 114 KRLKKEKVNVDIVS 127 (256)
Q Consensus 114 k~lkk~nI~V~vI~ 127 (256)
+.+++.||++.++.
T Consensus 51 ~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 51 AKAEAAGIATQVFK 64 (209)
T ss_dssp HHHHHTTCCEEECC
T ss_pred HHHHHcCCCEEEeC
Confidence 55677777776654
No 73
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=31.13 E-value=58 Score=25.72 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHh-cCceEEEEEecCC
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEE 131 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk-~nI~V~vI~fGae 131 (256)
+|+++.+|+...+..=...+++.+++ .++.|+++.+...
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~ 42 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPET 42 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCC
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEcccc
Confidence 67888888632233334456777777 8999999999865
No 74
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=30.95 E-value=45 Score=27.59 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=37.5
Q ss_pred eEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecC--------CcccccchhHHHHhhhCCC
Q psy14666 92 MRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGE--------EREGGKGQDEEEEEVQNTD 149 (256)
Q Consensus 92 ~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGa--------e~~i~k~l~~~~~~~~~~~ 149 (256)
++|++++||+... --..+.+.+.++.+.++.+.+|-+++ +........++.+.+..-|
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD 69 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSD 69 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSS
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCC
Confidence 5788999997654 23356666777778899999998874 1122334445555555544
No 75
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=30.40 E-value=99 Score=23.07 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=40.5
Q ss_pred CCCCcccHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCC----CChHHHHHHHHHHHhcCceEEEEEecCCc
Q psy14666 64 QPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVD----LEERELTKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 64 ~~~G~~sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~----~D~~di~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
.+.|...|.++=++.............+.+.|++=.+..+ +--+-+..+.+.+++.|+.+.+.+....+
T Consensus 20 ~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v 92 (130)
T 2kln_A 20 RYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDL 92 (130)
T ss_dssp ECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEECCSSHH
T ss_pred EECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 3456666666554433332222111113355555555444 24457788999999999999999887653
No 76
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.87 E-value=12 Score=28.24 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEe
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 128 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~f 128 (256)
.+||+++.| |...+.+++++.|.++..|++.--
T Consensus 3 skiiviiss----ddttleelarkikdeglevyillk 35 (110)
T 2lta_A 3 SKIIVIISS----DDTTLEELARKIKDEGLEVYILLK 35 (110)
Confidence 466666665 555688899999999998887644
No 77
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=28.49 E-value=1e+02 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
-+|-++|......|+-..+..+.|.++||.|..|++|+.
T Consensus 405 a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtS 443 (473)
T 3c1m_A 405 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSS 443 (473)
T ss_dssp EEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSC
T ss_pred EEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCC
Confidence 347788888777899999999999999999999999864
No 78
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=28.24 E-value=41 Score=25.33 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCC-ChHHHHHHHHHHHh-cCceEEEEEecCC
Q psy14666 93 RIIAFVGSPVDL-EERELTKLAKRLKK-EKVNVDIVSFGEE 131 (256)
Q Consensus 93 rIVlfvgS~l~~-D~~di~~~~k~lkk-~nI~V~vI~fGae 131 (256)
-+|+|+|..... ....+.++++.+++ .++++.++|-|.+
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~ 43 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPD 43 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTT
T ss_pred eEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCcc
Confidence 456666665332 44455555555543 3566666665544
No 79
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=28.15 E-value=64 Score=23.84 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHHHhcCceEEEEEec
Q psy14666 105 EERELTKLAKRLKKEKVNVDIVSFG 129 (256)
Q Consensus 105 D~~di~~~~k~lkk~nI~V~vI~fG 129 (256)
++.++.+.++.|++.+|.|.+++.|
T Consensus 74 ~~~~~~~ai~~L~~~~v~vEvlg~~ 98 (98)
T 3ced_A 74 SSVDFGKFEKELIERQVKMEVLRHG 98 (98)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEecCC
Confidence 5677889999999999999999754
No 80
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=26.55 E-value=71 Score=25.47 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHh-cCceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKK-EKVNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk-~nI~V~vI~fGae 131 (256)
++++++.+|+...+..-...+++.+.+ .++.|+++.+...
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 478888888532233334456777887 8899999888654
No 81
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=26.22 E-value=1.4e+02 Score=23.41 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=31.7
Q ss_pred ceEEEEEEcCCCCCChHHH-------HHHHHHHHhcCceEEEEEecCCcccccch
Q psy14666 91 KMRIIAFVGSPVDLEEREL-------TKLAKRLKKEKVNVDIVSFGEEREGGKGQ 138 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D~~di-------~~~~k~lkk~nI~V~vI~fGae~~i~k~l 138 (256)
+..+|+.++.+-+..+.++ ..+++.+...+++|.+|.|+.+..+.-.+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l 59 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTF 59 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECH
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEec
Confidence 4578888887666555332 23344444568999999999987654333
No 82
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=24.97 E-value=61 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHhcCceEEEEEecCC--cccccchhHHHHhhhCCC
Q psy14666 114 KRLKKEKVNVDIVSFGEE--REGGKGQDEEEEEVQNTD 149 (256)
Q Consensus 114 k~lkk~nI~V~vI~fGae--~~i~k~l~~~~~~~~~~~ 149 (256)
+.+.++||+|.+||==+. ..+.+.+.+..+.|.+++
T Consensus 87 ~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~ 124 (225)
T 3ugs_B 87 EKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCD 124 (225)
T ss_dssp HHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCC
Confidence 445678888888853221 234445555555566554
No 83
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein STRU initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Probab=24.30 E-value=84 Score=23.14 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHhcccCCCCCceEEEEEEcC-CCCC--ChHHHHHHHHHHHhcCceEEEEEec
Q psy14666 70 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDL--EERELTKLAKRLKKEKVNVDIVSFG 129 (256)
Q Consensus 70 sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS-~l~~--D~~di~~~~k~lkk~nI~V~vI~fG 129 (256)
.+..+|..+...+++.| .-.|.+|+-| .... +..++.+.++.|.+.+|++.+=+-+
T Consensus 17 ~~~~~L~~a~n~~~~~~----~~~i~vv~~G~av~~~~~~~~~~~~i~~L~~~gV~~~~C~~~ 75 (113)
T 1l1s_A 17 RVLLLISNVRNLMADLE----SVRIEVVAYSMGVNVLRRDSEYSGDVSELTGQGVRFCACSNT 75 (113)
T ss_dssp HHHHHHHHHHHHHHHCS----SEEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEHHH
T ss_pred HHHHHHHHHHHHHHhCC----CCcEEEEEechHHHHHHcCChHHHHHHHHHHCCCEEEecHHH
Confidence 45667777777777654 2355555544 3332 4456778888899899877665443
No 84
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=23.77 E-value=1.3e+02 Score=23.50 Aligned_cols=49 Identities=10% Similarity=0.211 Sum_probs=31.3
Q ss_pred eEEEEEEcCCCCCChHHH---HH----HHHHHHhcCceEEEEEecCCcccccchhH
Q psy14666 92 MRIIAFVGSPVDLEEREL---TK----LAKRLKKEKVNVDIVSFGEEREGGKGQDE 140 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di---~~----~~k~lkk~nI~V~vI~fGae~~i~k~l~~ 140 (256)
..+++.++++-+..+.++ .+ +++.+...+++|.+|.|+.+..+.-.+..
T Consensus 3 ~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~~ 58 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSD 58 (179)
T ss_dssp EEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHHH
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCcc
Confidence 467777887655555433 22 33334356899999999998776544443
No 85
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.50 E-value=55 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=25.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 95 IAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 95 VlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
+|+.+|.......-...+++.|++.++.|+++.+...
T Consensus 2 ~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~ 38 (138)
T 5nul_A 2 KIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDV 38 (138)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGC
T ss_pred EEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhC
Confidence 4555665332444445678888899999999887654
No 86
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.99 E-value=1e+02 Score=26.42 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=30.4
Q ss_pred CceEEEEEEcCCCCC-ChHHHH-HHHHHHHhcCceEEEEEecCC
Q psy14666 90 HKMRIIAFVGSPVDL-EERELT-KLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 90 ~~~rIVlfvgS~l~~-D~~di~-~~~k~lkk~nI~V~vI~fGae 131 (256)
...+|+++.||+... .-..+. .+++.+++.++.|.+|-+++-
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~ 76 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL 76 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC
Confidence 456899999998642 222333 467777888999999999863
No 87
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=22.86 E-value=1.4e+02 Score=28.15 Aligned_cols=41 Identities=27% Similarity=0.422 Sum_probs=35.2
Q ss_pred ceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.--+|-+||......++-.-+..+.|.+++|.|..|+-|+.
T Consensus 373 ~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtS 413 (446)
T 3tvi_A 373 NMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSS 413 (446)
T ss_dssp EEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSC
T ss_pred CeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCC
Confidence 44578888887777899999999999999999999998864
No 88
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=22.78 E-value=97 Score=24.90 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCC-CChHHHH-HHHHH-HHhcCceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVD-LEERELT-KLAKR-LKKEKVNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~-~D~~di~-~~~k~-lkk~nI~V~vI~fGae 131 (256)
.+|++|.||+.. ..-..+. .+++. +++.++.|.+|-+.+.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~ 45 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDL 45 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGS
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 378888899753 2233343 35566 7777999999998753
No 89
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.75 E-value=47 Score=26.25 Aligned_cols=37 Identities=8% Similarity=0.037 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 105 EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 105 D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
|+.++.++++.+.+.+ +|.++|.|....++..++..-
T Consensus 25 ~~~~l~~~~~~i~~a~-~I~i~G~G~S~~~a~~~~~~l 61 (187)
T 3sho_A 25 QPEAIEAAVEAICRAD-HVIVVGMGFSAAVAVFLGHGL 61 (187)
T ss_dssp CHHHHHHHHHHHHHCS-EEEEECCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-EEEEEecCchHHHHHHHHHHH
Confidence 6777888888888877 888888888777776666533
No 90
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=22.60 E-value=94 Score=24.60 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
.+|+++.+| +. +..=...+++.+++.++.|.++.+.+.
T Consensus 5 mkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 478888888 44 333344567778888999999999775
No 91
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.30 E-value=94 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=23.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecC
Q psy14666 94 IIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 94 IVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGa 130 (256)
++|+.+|.......=...+++.+.+.++.|+++.+.+
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~ 38 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFED 38 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTS
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEccc
Confidence 4455566532233344456777888889999888765
No 92
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=22.13 E-value=2.1e+02 Score=23.81 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHH
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEE 143 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~ 143 (256)
++.|+.||. .|-.-..+.++.|++-+|++++--.|+ -+...++.++.+
T Consensus 8 ~V~IimgS~--SD~~v~~~a~~~l~~~gi~~ev~V~Sa-HR~p~~~~~~~~ 55 (169)
T 3trh_A 8 FVAILMGSD--SDLSTMETAFTELKSLGIPFEAHILSA-HRTPKETVEFVE 55 (169)
T ss_dssp EEEEEESCG--GGHHHHHHHHHHHHHTTCCEEEEECCT-TTSHHHHHHHHH
T ss_pred cEEEEECcH--HhHHHHHHHHHHHHHcCCCEEEEEEcc-cCCHHHHHHHHH
Confidence 566666663 366667777777777777776544443 344555555543
No 93
>3fzy_A RTX toxin RTXA; RTXA toxin, CPD, cysteine protease domain, PRE-cleavage form IDP00167, structural genomics; HET: IHP; 1.95A {Vibrio cholerae} PDB: 3eeb_A* 3gcd_A*
Probab=21.77 E-value=2.4e+02 Score=24.62 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=34.7
Q ss_pred CCceEEEEEEcCCCCC--ChHHHHHHHHHHHhcCceEEEEEecCCcccc
Q psy14666 89 NHKMRIIAFVGSPVDL--EERELTKLAKRLKKEKVNVDIVSFGEEREGG 135 (256)
Q Consensus 89 ~~~~rIVlfvgS~l~~--D~~di~~~~k~lkk~nI~V~vI~fGae~~i~ 135 (256)
..+.+|+|.-++.... ..+=..+.++.|.+++|+.+|-+-..++.|-
T Consensus 155 ~~P~~IsLvGCsL~~~~~~~~Fa~~f~~aL~~~Gi~~~VsAr~~~V~Vd 203 (234)
T 3fzy_A 155 NKPDHISIVGSSLVSDDKQKGFGHQFINAMDANGLRVDVSVRSSELAVD 203 (234)
T ss_dssp CCCSEEEEESSSCSCTTSSSSHHHHHHHHHHHTTCCCEEEEESSCEEEC
T ss_pred CCCCEEEEEEecCcCCCccccHHHHHHHHHHhCCCceeEEEEEeeEEEC
Confidence 3466777765555443 3334567899999999999999999998774
No 94
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=21.66 E-value=2.4e+02 Score=24.10 Aligned_cols=54 Identities=15% Similarity=0.028 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 70 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 70 sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
+..+.++.+...++.. ...+.+.+-. ..-..+.+.++++++.||.|.++.+|..
T Consensus 7 ~~e~Ii~r~~e~I~~A-----~~el~lsi~~---e~l~~l~~~L~~A~~rGV~V~liv~~~~ 60 (233)
T 2f5t_X 7 SFDEAIEMFRESLYSA-----KNEVIVVTPS---EFFETIREDLIKTLERGVTVSLYIDKIP 60 (233)
T ss_dssp CHHHHHHHHHHHHHTC-----SSEEEEEECG---GGHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHHh-----hhEEEEEeCH---HHHHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 4566677777777643 4466664333 3556788889999999999999999975
No 95
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=21.63 E-value=2.6e+02 Score=22.89 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccccceeeeee----cccch
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSL----EKSSA 168 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l----~~~h~ 168 (256)
++.|+.||. .|-.-..+.++.|++-+|+.++=-.| --+..+++.++.+...... -+.|++ -+.|+
T Consensus 4 ~V~Iimgs~--SD~~v~~~a~~~l~~~gi~~ev~V~s-aHR~p~~~~~~~~~a~~~~--------~~~ViIa~AG~aa~L 72 (159)
T 3rg8_A 4 LVIILMGSS--SDMGHAEKIASELKTFGIEYAIRIGS-AHKTAEHVVSMLKEYEALD--------RPKLYITIAGRSNAL 72 (159)
T ss_dssp EEEEEESSG--GGHHHHHHHHHHHHHTTCEEEEEECC-TTTCHHHHHHHHHHHHTSC--------SCEEEEEECCSSCCH
T ss_pred eEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEc-ccCCHHHHHHHHHHhhhcC--------CCcEEEEECCchhhh
Confidence 677777773 47888888999999999998855544 4455666666654444311 133333 46666
Q ss_pred hhhhccccCCC
Q psy14666 169 CETNTSILTPL 179 (256)
Q Consensus 169 ~~~l~~~~~pp 179 (256)
--.+-.+++-|
T Consensus 73 pgvvA~~t~~P 83 (159)
T 3rg8_A 73 SGFVDGFVKGA 83 (159)
T ss_dssp HHHHHHHSSSC
T ss_pred HHHHHhccCCC
Confidence 66666665444
No 96
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=21.56 E-value=38 Score=32.34 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=31.8
Q ss_pred eeeEeeecCCCcccCCCCCcchHHHHHhhHHhHhhccCCCCCCCcceeecccC
Q psy14666 203 ITTSLNVDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAE 255 (256)
Q Consensus 203 ~~~~~~~dns~~~~~g~~~p~r~~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~ 255 (256)
..+++++|.|..|..++.- +|+.+..-|+-+-+... .++..|||+++++
T Consensus 369 ~~v~lvvD~SgSM~~~~~~-~~l~~~~~Aa~l~~~~~---~~~d~vglv~Fs~ 417 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVLG-SILNASVVAAAMCMLVA---RTEKDSHMVAFSD 417 (538)
T ss_dssp CCEEEEEECSGGGGSBSTT-SSCBHHHHHHHHHHHHH---HHCSSEEEEEESS
T ss_pred ceEEEEEECccccCCCCCC-CcHHHHHHHHHHHHHHh---ccCCceEEEEECC
Confidence 3677889999999988765 56776333222222222 2456799998875
No 97
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.50 E-value=1.7e+02 Score=21.62 Aligned_cols=27 Identities=15% Similarity=0.323 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHhcCceEEEEEecCC
Q psy14666 105 EERELTKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 105 D~~di~~~~k~lkk~nI~V~vI~fGae 131 (256)
++.++.+.++.|++.+|.|.+++.--|
T Consensus 74 ~~~~~~~ai~~L~~~~v~vEvl~~~~~ 100 (106)
T 3dhx_A 74 TQQDTQAAIAWLQEHHVKVEVLGYVLE 100 (106)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEeeeeee
Confidence 677899999999999999999986544
No 98
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=21.42 E-value=1.2e+02 Score=23.03 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEE
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 127 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~ 127 (256)
+++|+.+|.......-...+++.+...++.|.++.
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 46666677654466656677888888888888774
No 99
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=21.31 E-value=2.1e+02 Score=23.92 Aligned_cols=81 Identities=9% Similarity=-0.015 Sum_probs=47.9
Q ss_pred ceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccccceeeeeecccchhh
Q psy14666 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACE 170 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~ 170 (256)
..++.|+.||. .|-.-..+.++.|++-+|..++--.|+ -+...++.++.+.....+ + .-.--++=-+.|+--
T Consensus 12 ~~~V~IimGS~--SD~~v~~~a~~~L~~~Gi~~ev~V~Sa-HR~p~~~~~~~~~a~~~g---~--~ViIa~AG~aa~Lpg 83 (174)
T 3kuu_A 12 GVKIAIVMGSK--SDWATMQFAADVLTTLNVPFHVEVVSA-HRTPDRLFSFAEQAEANG---L--HVIIAGNGGAAHLPG 83 (174)
T ss_dssp CCCEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCT-TTCHHHHHHHHHHTTTTT---C--SEEEEEEESSCCHHH
T ss_pred CCcEEEEECcH--HHHHHHHHHHHHHHHcCCCEEEEEEcc-cCCHHHHHHHHHHHHhCC---C--cEEEEECChhhhhHH
Confidence 34677887884 478888889999999999988655554 345556666543333211 0 111111224666666
Q ss_pred hhccccCCC
Q psy14666 171 TNTSILTPL 179 (256)
Q Consensus 171 ~l~~~~~pp 179 (256)
.+-.+++-|
T Consensus 84 vvA~~t~~P 92 (174)
T 3kuu_A 84 MLAAKTLVP 92 (174)
T ss_dssp HHHHTCSSC
T ss_pred HHHhccCCC
Confidence 666655433
No 100
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=21.20 E-value=89 Score=24.76 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=30.9
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEec
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 129 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fG 129 (256)
-+|-++|......||-+.+..+.|.++||.|..|+.+
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~S 132 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIATS 132 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEcc
Confidence 3467888877778899999999999999999988744
No 101
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=21.15 E-value=1e+02 Score=26.28 Aligned_cols=55 Identities=11% Similarity=0.248 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEEEEcCCCCCChHHHH-HHHHHHHhcCceEEEEEecC
Q psy14666 72 MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELT-KLAKRLKKEKVNVDIVSFGE 130 (256)
Q Consensus 72 ~naL~~A~~aLkh~p~~~~~~rIVlfvgS~l~~D~~di~-~~~k~lkk~nI~V~vI~fGa 130 (256)
..|+..+...++... ..+++++||.+|-. ..-+.+- .+++.+ ..++.+.++.+.+
T Consensus 23 ~~av~~~~~l~~~~~--~~~~kv~IlYgS~t-Gnte~~A~~La~~l-~~g~~v~v~~l~~ 78 (219)
T 3hr4_A 23 VKAVLFACMLMRKTM--ASRVRVTILFATET-GKSEALAWDLGALF-SCAFNPKVVCMDK 78 (219)
T ss_dssp HHHHHHHHHHHHHHH--HTSCEEEEEEECSS-SHHHHHHHHHHHHH-TTTSEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHH--hcCCcEEEEEECCc-hHHHHHHHHHHHHH-HcCCCeEEEEccc
Confidence 344555444443322 24668888888854 3444444 455555 5788888888774
No 102
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=20.97 E-value=50 Score=31.79 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=31.9
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccc
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGG 135 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~ 135 (256)
..-|+|+++. |+..+.++++.|+..+..++.|+||-..+..
T Consensus 347 ~~~Ii~Sd~L---de~~~~~ii~~l~~~G~~~d~v~fGvGT~L~ 387 (484)
T 3dhf_A 347 YLRVIQGDGV---DINTLQEIVEGMKQKMWSIENIAFGSGGGLL 387 (484)
T ss_dssp TEEEEECSSC---SHHHHHHHHHHHHHTTBCGGGEEEEESHHHH
T ss_pred CEEEEEcCCC---CHHHHHHHHHHHHhCCCCcccceEcccCccc
Confidence 3556676663 8999999999999999999997777665543
No 103
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=20.96 E-value=76 Score=24.51 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=62.7
Q ss_pred CceEEEEEEcCCCCC-ChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHH--hhhCCCCCCccccceeeeeeccc
Q psy14666 90 HKMRIIAFVGSPVDL-EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEE--EVQNTDRPNCHYNLTLSTSLEKS 166 (256)
Q Consensus 90 ~~~rIVlfvgS~l~~-D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~--~~~~~~~~~~~~~g~~~v~l~~~ 166 (256)
..+.+|+|+|..... ....+.++++.+ .++++.++|-|.+.. .+.+..+ ..+- .++-++-| .++.+
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l--~~~~l~i~G~~~~~~---~l~~~~~~~~~~l--~~~v~~~g----~~~~~ 89 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKL--QDEKLYIVGWFSKGD---HAERYARKIMKIA--PDNVKFLG----SVSEE 89 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHC--TTSCEEEEBCCCTTS---THHHHHHHHHHHS--CTTEEEEE----SCCHH
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhC--CCcEEEEEecCccHH---HHHHHHHhhhccc--CCcEEEeC----CCCHH
Confidence 345678888875321 333444444444 378888888777653 3444333 2222 12333333 33433
Q ss_pred chhhhhcc---ccCCCCCCCCCCCccceecCCccccc-eee--eeEeeecCC---Cc---ccCCCCCcchHHHHHhhHHh
Q psy14666 167 SACETNTS---ILTPLGSIPPPDLTSLVRCPHVSHVV-AMI--TTSLNVDNS---DF---MRNGDFLPTRLQAQQDAVNL 234 (256)
Q Consensus 167 h~~~~l~~---~~~pp~~~~~~~~~~lv~mgfp~~~~-~~~--~~~~~~dns---~~---~~~g~~~p~r~~~q~~a~~~ 234 (256)
.+.+++.. .+.|+- .-|||-..+ .|+ ..+++.|.. ++ ..+|.+++.-.++-.+++..
T Consensus 90 e~~~~~~~adi~v~ps~-----------~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 90 ELIDLYSRCKGLLCTAK-----------DEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKK 158 (177)
T ss_dssp HHHHHHHHCSEEEECCS-----------SCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeCCC-----------cCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHH
Confidence 34444332 222222 113443333 333 344445543 22 33566667677777888877
Q ss_pred Hhhc
Q psy14666 235 VCHS 238 (256)
Q Consensus 235 ~~~~ 238 (256)
+...
T Consensus 159 l~~~ 162 (177)
T 2f9f_A 159 VSKN 162 (177)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7643
No 104
>2pd2_A Hypothetical protein ST0148; structural genomics, NPPSFA, national project on protein STR and functional analyses; 2.06A {Sulfolobus tokodaii}
Probab=20.96 E-value=1.2e+02 Score=21.89 Aligned_cols=56 Identities=7% Similarity=0.074 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhcccCCCCCceEEEEEEcC-CCCC--ChHHHHHHHHHHHhcCceEEEEEec
Q psy14666 70 NFMTGIRIAHLALKHRQGKNHKMRIIAFVGS-PVDL--EERELTKLAKRLKKEKVNVDIVSFG 129 (256)
Q Consensus 70 sl~naL~~A~~aLkh~p~~~~~~rIVlfvgS-~l~~--D~~di~~~~k~lkk~nI~V~vI~fG 129 (256)
.+.++|..+...++..| ...+.+|+.| .... ...++.+.++.|.+.+|++.+=+-+
T Consensus 12 ~~~~al~~~~n~~~~~~----~~~v~vv~~g~gv~~~~~~~~~~~~i~~l~~~gV~~~~C~~s 70 (108)
T 2pd2_A 12 KVPQALRSVINLYNDIK----DAEIEVVLHQSAIKALLKDSDTRSIIEDLIKKNILIVGCENS 70 (108)
T ss_dssp GHHHHHHHHHHHHHHST----TCEEEEEECGGGGGGGBTTCTTHHHHHHHHHTTCEEEEEHHH
T ss_pred HHHHHHHHHHHHHhhCC----CCeEEEEEcChHHHHHHcCchHHHHHHHHHHCcCEEEecHHH
Confidence 45668888888887644 2355555533 3321 3346788899999999977665544
No 105
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=20.90 E-value=1.1e+02 Score=26.98 Aligned_cols=42 Identities=19% Similarity=0.097 Sum_probs=30.8
Q ss_pred CceEEEEEEcCCCCC-ChHHH-HHHHHHHHhcCceEEEEEecCC
Q psy14666 90 HKMRIIAFVGSPVDL-EEREL-TKLAKRLKKEKVNVDIVSFGEE 131 (256)
Q Consensus 90 ~~~rIVlfvgS~l~~-D~~di-~~~~k~lkk~nI~V~vI~fGae 131 (256)
...+|+++.||+... .-..+ ..+++.+++.++.|.+|-+++.
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dl 100 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDL 100 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTC
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcC
Confidence 456999999998742 22233 3467778888999999999864
No 106
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=20.75 E-value=1.1e+02 Score=23.95 Aligned_cols=40 Identities=8% Similarity=0.243 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCC--CChHHHH-HHHHHHHhcC--ceEEEEEecCC
Q psy14666 92 MRIIAFVGSPVD--LEERELT-KLAKRLKKEK--VNVDIVSFGEE 131 (256)
Q Consensus 92 ~rIVlfvgS~l~--~D~~di~-~~~k~lkk~n--I~V~vI~fGae 131 (256)
++|+++.+|+.. ..-..+. .+++.+++.+ +.|.++-+.+.
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 378888899863 2222333 4566777765 89999999875
No 107
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=20.37 E-value=1.1e+02 Score=23.00 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=29.0
Q ss_pred ceEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCc
Q psy14666 91 KMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER 132 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~ 132 (256)
+..++++..|. .-+...++++.|+++++.+.+|.+..--
T Consensus 13 g~dv~iv~~Gs---~~~~a~eA~~~L~~~Gi~v~vi~~r~~~ 51 (118)
T 3ju3_A 13 EADITFVTWGS---QKGPILDVIEDLKEEGISANLLYLKMFS 51 (118)
T ss_dssp SCSEEEEEEGG---GHHHHHHHHHHHHHTTCCEEEEEECSSC
T ss_pred CCCEEEEEECc---cHHHHHHHHHHHHHCCCceEEEEECeEe
Confidence 34555555443 4567888999999999999999998654
No 108
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=20.35 E-value=2.2e+02 Score=22.64 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=30.8
Q ss_pred ceEEEEEEcCCCCCC-hHHHHHHHHHHHh------cCceEEEEEecCCcccc
Q psy14666 91 KMRIIAFVGSPVDLE-ERELTKLAKRLKK------EKVNVDIVSFGEEREGG 135 (256)
Q Consensus 91 ~~rIVlfvgS~l~~D-~~di~~~~k~lkk------~nI~V~vI~fGae~~i~ 135 (256)
+..+|+.++.+-+.. -..+.+.++.+.+ .+.+|.+|.|+.+.++.
T Consensus 7 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~ 58 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE 58 (213)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEE
T ss_pred CccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEE
Confidence 457888887765543 3344445555544 69999999999987653
No 109
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.34 E-value=2.5e+02 Score=23.40 Aligned_cols=80 Identities=8% Similarity=-0.064 Sum_probs=48.3
Q ss_pred eEEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHHHhhhCCCCCCccccceeeeeecccchhhh
Q psy14666 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACET 171 (256)
Q Consensus 92 ~rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~~~~~~~~~~~~~~~g~~~v~l~~~h~~~~ 171 (256)
-++.|+.||. .|-.-+.+.++.|++-+|..++--.|+. +..+++.++.+.....+- .-.--++=-+.|+--.
T Consensus 13 P~V~IimGS~--SD~~v~~~a~~~l~~~gi~~ev~V~saH-R~p~~l~~~~~~a~~~g~-----~ViIa~AG~aahLpgv 84 (173)
T 4grd_A 13 PLVGVLMGSS--SDWDVMKHAVAILQEFGVPYEAKVVSAH-RMPDEMFDYAEKARERGL-----RAIIAGAGGAAHLPGM 84 (173)
T ss_dssp CSEEEEESSG--GGHHHHHHHHHHHHHTTCCEEEEECCTT-TSHHHHHHHHHHHTTTTC-----SEEEEEEESSCCHHHH
T ss_pred CeEEEEeCcH--hHHHHHHHHHHHHHHcCCCEEEEEEccc-cCHHHHHHHHHHHHhcCC-----eEEEEeccccccchhh
Confidence 3677777884 4788888899999999999776555554 455566666544433210 1112223356666666
Q ss_pred hccccCCC
Q psy14666 172 NTSILTPL 179 (256)
Q Consensus 172 l~~~~~pp 179 (256)
+-.+++-|
T Consensus 85 vA~~t~~P 92 (173)
T 4grd_A 85 LAAKTTVP 92 (173)
T ss_dssp HHHHCCSC
T ss_pred heecCCCC
Confidence 66655433
No 110
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=20.25 E-value=81 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.006 Sum_probs=31.1
Q ss_pred eeEeeecCCCcccCCCCCcchH-HHHHhhHHhHhhccCCCCCCCcceeecccCC
Q psy14666 204 TTSLNVDNSDFMRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256 (256)
Q Consensus 204 ~~~~~~dns~~~~~g~~~p~r~-~~q~~a~~~~~~~k~~~~~~~~~g~~~~~~~ 256 (256)
-.++.+|.|..|... .| +.-.+++.-+...=.-+.+..+|||++++++
T Consensus 20 DivfvlD~SgSM~~~-----~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~ 68 (266)
T 4hqo_A 20 DLYLLVDGSGSIGYP-----NWITKVIPMLNGLINSLSLSRDTINLYMNLFGSY 68 (266)
T ss_dssp EEEEEEECSTTTCHH-----HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSS
T ss_pred eEEEEEECCCCcChh-----HHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCC
Confidence 345679999888643 45 2445555555444443457888999998763
No 111
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=20.24 E-value=1.2e+02 Score=24.23 Aligned_cols=50 Identities=18% Similarity=0.048 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCCChHHHHHHHHHHHhcCceEEEEEecCCcccccchhHHH
Q psy14666 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEE 142 (256)
Q Consensus 93 rIVlfvgS~l~~D~~di~~~~k~lkk~nI~V~vI~fGae~~i~k~l~~~~ 142 (256)
..|.|.||.-...++.+.++++.+++.++++.+..=|.-....+.+.++.
T Consensus 71 ~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~ 120 (245)
T 3c8f_A 71 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELL 120 (245)
T ss_dssp CEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHH
T ss_pred CeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHH
Confidence 45667776433455557899999999999877776553211334444443
Done!