RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14666
(256 letters)
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein,
nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Length = 192
Score = 158 bits (400), Expect = 1e-48
Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 4/156 (2%)
Query: 1 MRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADS-VEVLATLTSDVGRILSK 59
M NGD++PTR +AQ+D V+++ + K NPEN GL+ + D+ +VL+TLT D G+ LS
Sbjct: 15 MINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSA 74
Query: 60 LHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
+H + GN F GI+IA LALKHR+ K + RI+AFVGSP+ +E+ L +LAKR+KK
Sbjct: 75 MHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKN 134
Query: 120 KVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHY 155
V +DI+ GE + Q + ++D +CH
Sbjct: 135 NVAIDIIHIGELQNESALQ-HFIDAANSSD--SCHL 167
Score = 69.7 bits (170), Expect = 1e-14
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 209 VDNSDFMRNGDFLPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256
+DNS++M NGD++PTR +AQ+D V+++ + K NPEN GL+ + +
Sbjct: 9 IDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDN 56
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 40.8 bits (96), Expect = 1e-04
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 29 NPENNVGLLAMADSVEVLATLTSD---VGRILSKLHQVQPNGNINFMTGIRIAHLALKHR 85
+PE + + + ++ LT D + + L L +V P G G+++A+ ++
Sbjct: 39 SPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKA 98
Query: 86 QGKNHKMRIIAFV-GSPVDLEERELTKLAKRLKKEKVNVDIVSFGE 130
G IIA G L K AK + +V V +
Sbjct: 99 GGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 144
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for S genomics, MCSG, PSI-2;
HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 40.4 bits (95), Expect = 2e-04
Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 8/131 (6%)
Query: 1 MRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILSK 59
M D P+RL +A++ LV + VG++ A +TSD
Sbjct: 24 MLAQDVQPSRLEKAKRLISRLV-----DELDNDKVGMIVFAGDAFTQLPITSDYISAKMF 78
Query: 60 LHQVQPNGNINFMTGIRIA-HLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKK 118
L + P+ T I A +LA + + R I + + E + AK +
Sbjct: 79 LESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-GAVEAAKAAAE 137
Query: 119 EKVNVDIVSFG 129
+ + V ++ G
Sbjct: 138 KGIQVSVLGVG 148
Score = 27.7 bits (62), Expect = 3.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 209 VDNSDFMRNGDFLPTRL-QAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
+D S+ M D P+RL +A++ LV + VG++ A
Sbjct: 18 LDISNSMLAQDVQPSRLEKAKRLISRLV-----DELDNDKVGMIVFA 59
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 38.0 bits (88), Expect = 0.001
Identities = 17/135 (12%), Positives = 46/135 (34%), Gaps = 14/135 (10%)
Query: 11 LQAQQDAVNLVCHSKTRSNPENNVGLLAMA-DSVEVLATLTSDVGRILSKLHQVQPNGNI 69
+A+ L+ + ++V L+ + +VL + + + +L + G
Sbjct: 24 SEAKGAVELLLGRA---YAARDHVSLITFRGTAAQVLLQPSRSLTQTKRQLQGLPGGGGT 80
Query: 70 NFMTGIRIAHLALKHRQGKNHKMRIIAF--------VGSPVDLEE--RELTKLAKRLKKE 119
+G+ +A + K + + I + + E + TK+A+ ++
Sbjct: 81 PLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRAS 140
Query: 120 KVNVDIVSFGEEREG 134
+ I+
Sbjct: 141 GMPAVIIDTAMRPNP 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 37/250 (14%), Positives = 69/250 (27%), Gaps = 94/250 (37%)
Query: 36 LLAMADSVEVLATLTSDVGRILSKL----HQVQPNGNIN----------------FM--- 72
+A DS E +L + ++ PN ++ M
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 73 TGIRIAHLALKHRQGKNHKM----RI-IA-------FV--GSPVDLEERELTKLAKRLKK 118
+ + + + N + ++ I+ V G P L L L+K
Sbjct: 342 SNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY-----GLNLTLRK 395
Query: 119 EKVNVDIVSFGEEREGGKGQDE---EEEEVQNTDR------P-NCHYNLTLSTSLEKSSA 168
K G Q E +++ ++R P + H L ++ L
Sbjct: 396 AKA-----------PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDL 443
Query: 169 CETNTSILTPLGSIPPPDLTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDF-LPTRLQA 227
+ N S D+ + P V D SD +R + R+
Sbjct: 444 VKNNV-------SFNAKDI----QIP-VYDT---------FDGSD-LRVLSGSISERI-- 479
Query: 228 QQDAVNLVCH 237
V+ +
Sbjct: 480 ----VDCIIR 485
Score = 38.9 bits (90), Expect = 0.002
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 52/149 (34%)
Query: 4 GDFLPTRLQAQQDAVNLVCHSKTR-----------SNPENNVGLLAMADSVEVLATLTSD 52
D + + V +V R +N G++A+ V A+ + +
Sbjct: 1774 ADVMSI-----ESLVEVV---FYRGMTMQVAVPRDELGRSNYGMIAINPG-RVAASFSQE 1824
Query: 53 -----VGRILSKLHQ-VQP-NGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLE 105
V R+ + V+ N N+ + + A G L+
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVE---NQQY----------------VAA--GDLRALD 1863
Query: 106 ERELTKLAKRLKKEKVNVD--IVSFGEER 132
+T + +K +K+++ S E
Sbjct: 1864 T--VTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 33.1 bits (75), Expect = 0.11
Identities = 20/132 (15%), Positives = 31/132 (23%), Gaps = 56/132 (42%)
Query: 150 RPNCHYNLTLS-TSLEKSSACETNTSILTP--------------LGSIPPPD-------- 186
RP LTLS SLE +L P +P P
Sbjct: 7 RP-----LTLSHGSLE--------HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 187 --------------LTSLVRCPHVSHVVAMITTSLNVDNSDFMRNGDF------LPTRLQ 226
++SLV V ++ L + ++ D L
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 227 AQQDAVNLVCHS 238
+ +
Sbjct: 114 TTLVKTKELIKN 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.032
Identities = 34/233 (14%), Positives = 64/233 (27%), Gaps = 65/233 (27%)
Query: 27 RSNPENNVGLLAMADSVEVLATLTSDVGRILSKLHQV--QPNGNINFMTGIRIAHLALKH 84
S E V VE L + ++S + QP + + ++ +
Sbjct: 72 LSKQEEMV-----QKFVE--EVLRINYKFLMSPIKTEQRQP-------SMMTRMYIEQRD 117
Query: 85 R-QGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKG------ 137
R N F V + KL + L + + +++ G G G
Sbjct: 118 RLYNDNQV-----FAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDG---VLGSGKTWVAL 168
Query: 138 ---QDEEEEEVQNTDRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDLTSLVRCP 194
+ + + + L L C + ++L L L +
Sbjct: 169 DVCLSYKVQCKMDF---KIFW-LNLKN-------CNSPETVLEML-----QKLLYQIDPN 212
Query: 195 HVSHVVAMITTSLNVDN-SDFMRNGDFLPTRLQAQQDAVN-L-----VCHSKT 240
S L + + +R RL + N L V ++K
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELR-------RLLKSKPYENCLLVLLNVQNAKA 258
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
struct initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 30.2 bits (69), Expect = 0.40
Identities = 4/41 (9%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE 133
++ +PV L + + + ++ + + + +E
Sbjct: 4 KVAVLAVNPV--NGCGLFQYLEAFFENGISYKVFAVSDTKE 42
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.41
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 105 EERELTKLAKRLK 117
E++ L KL LK
Sbjct: 18 EKQALKKLQASLK 30
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold,
gluconeogenesis, glycolysis, structural genomics; HET:
G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A*
Length = 446
Score = 30.4 bits (69), Expect = 0.58
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 74 GIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVS 127
G R A L +++ I FVG+ + +L L + +V+++S
Sbjct: 90 GARAAIEMLTSSFRNSNEYPEIVFVGNHLS--STYTKELVDYLADKDFSVNVIS 141
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function,
cysteine oxidation; 1.05A {Schizosaccharomyces pombe}
PDB: 4ge3_A 4ge0_A
Length = 194
Score = 29.1 bits (66), Expect = 1.0
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 89 NHKMRIIAFV--GSPVDLEERELTKLAKRLKKEKVNVDIVSFGEERE 133
+H +++ FV G+ +E E + K+ ++ +D V GE ++
Sbjct: 2 SHMVKVCLFVADGT----DEIEFSAPWGIFKRAEIPIDSVYVGENKD 44
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEER-EGGKGQDEEEEEVQ 146
+I V EE ELT ++ +++S + KG E +E+ +
Sbjct: 11 KIAILAADGV--EEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYR 63
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 28.2 bits (64), Expect = 1.9
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGK 136
M+++ E+ EL R+K+E V + SF + GK
Sbjct: 3 MKVLFLSADGF--EDLELIYPLHRIKEEGHEVYVASFQRGKITGK 45
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD
with sulfur, putative REDU PSI; 1.28A {Pseudomonas
aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Length = 193
Score = 27.7 bits (62), Expect = 3.4
Identities = 5/44 (11%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 91 KMRIIAFVGSPVDLEE----RELTKLAKRLKKEKVNVDIVSFGE 130
++++ GS L + A L +++++
Sbjct: 6 DIKVLGISGS---LRSGSYNSAALQEAIGLVPPGMSIELADISG 46
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 28.0 bits (63), Expect = 3.4
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 11/45 (24%)
Query: 106 ERELTKLAKRLKKEK-----------VNVDIVSFGEEREGGKGQD 139
ER + L + + V V++ + EE + ++
Sbjct: 135 ERRIEDLRESHALLEPKEGPAEAGDLVRVNMEVYNEEGKKLTSRE 179
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A
{Vibrio cholerae o1 biovar el tor}
Length = 208
Score = 27.6 bits (62), Expect = 3.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 105 EERELTKLAKRLKKEKVNVDIVSFGEERE 133
EE E + L + V + + G++ +
Sbjct: 21 EEMETVIIVDTLVRAGFQVTMAAVGDKLQ 49
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 27.1 bits (61), Expect = 3.8
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 98 VGSPVDLEERELTK-----LAKRLK--------KEKVNVD 124
VG+ DL R + LA+ K + V+
Sbjct: 114 VGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome,
PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS,
structural genomics; 2.03A {Escherichia coli} SCOP:
c.23.16.2
Length = 193
Score = 27.2 bits (61), Expect = 4.4
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 78 AHLALKHRQGKNHKM--RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF--GEERE 133
HL K + +I + E+ E T A +K V + G+ +
Sbjct: 9 HHLESTSLY-KKAGLSKKIAVLITDEF--EDSEFTSPADEFRKAGHEVITIEKQAGKTVK 65
Query: 134 GGKG 137
G KG
Sbjct: 66 GKKG 69
>2kkm_A Translation machinery-associated protein 16; nucleus, structural
genomics, PSI-2, protein structure initiative; NMR
{Saccharomyces cerevisiae}
Length = 144
Score = 26.8 bits (59), Expect = 4.7
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 75 IRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREG 134
+IA H+ + H++ + F+ V+ + K I SF E
Sbjct: 7 DKIAAKKKLHQDKRVHELARVKFMQDVVN---SDTFKGQPIFDHAHTREFIQSFIERD-- 61
Query: 135 GKGQDEEEEEVQNTDRPN 152
D E +E++ R N
Sbjct: 62 ----DTELDELKKKRRSN 75
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal
rearrangement, DNA-binding, nucleus, phosphorylation,
proto oncogene; NMR {Homo sapiens}
Length = 131
Score = 26.8 bits (59), Expect = 4.7
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 79 HLALKHRQGKNHKMR--IIAFVGSPVDLEERELTKLAKRLKK---EKVNVDIVSFGEERE 133
H L +R G ++ + F G P + + K + LKK + ER
Sbjct: 33 HKLLYNRPGTVSSLKKNVGQFSGFPFEKGSVQYKKKEEMLKKFRNAMLKSICEVLDLERS 92
Query: 134 GGKGQ 138
G +
Sbjct: 93 GVNSE 97
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 26.8 bits (60), Expect = 5.2
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 98 VGSPVDLEERELTK-----LAKRLK--------KEKVNVD 124
VG+ DL R + LA+ K + VD
Sbjct: 115 VGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVD 154
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 27.3 bits (61), Expect = 5.7
Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Query: 84 HRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE-------KVNVDIVSFGE-EREGG 135
++G + + + + + L + ++++ ER G
Sbjct: 367 TKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSVG 426
Query: 136 K 136
K
Sbjct: 427 K 427
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 26.8 bits (60), Expect = 5.9
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 98 VGSPVDLEERELTK-----LAKRLK--------KEKVNVD 124
VG+ DL R + LAK K + V+
Sbjct: 132 VGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like
domains; structural genomics; HET: MSE CSX; 1.90A
{Anabaena variabilis atcc 29413}
Length = 365
Score = 26.7 bits (59), Expect = 7.7
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 105 EERELTKLAKRLKKEKVNVDIVSFGEERE 133
E+ E LK+ V ++ +
Sbjct: 22 EDTEFIIPCNGLKQAGFEVVVLGSRMNEK 50
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein;
2.00A {Drosophila melanogaster}
Length = 190
Score = 26.3 bits (59), Expect = 7.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 105 EERELTKLAKRLKKEKVNVDIVSFGEERE 133
EE E A L++ + V +
Sbjct: 17 EEMEFIIAADVLRRAGIKVTVAGLNGGEA 45
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone,
cytoplasm, disease mutation, nucleus, oncogene,
oxidation, parkinson disease; 1.05A {Homo sapiens} PDB:
1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A*
3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A
2or3_A 3bwe_A 3b38_A 3b36_A ...
Length = 197
Score = 26.4 bits (59), Expect = 8.5
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 105 EERELTKLAKRLKKEKVNVDIVSFGEERE 133
EE E +++ + V + +
Sbjct: 15 EEMETVIPVDVMRRAGIKVTVAGLAGKDP 43
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Length = 427
Score = 26.3 bits (59), Expect = 9.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 38 AMADSVEVLATLTSDVGRILSKLHQVQPNG 67
M + E + L VG ++ V+ +G
Sbjct: 89 EMIKACETVIGLKDPVGEVIDS--WVREDG 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.367
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,709,454
Number of extensions: 214600
Number of successful extensions: 449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 38
Length of query: 256
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,160,982
Effective search space: 686562030
Effective search space used: 686562030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)