RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14666
(256 letters)
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 71.2 bits (173), Expect = 2e-15
Identities = 19/191 (9%), Positives = 47/191 (24%), Gaps = 20/191 (10%)
Query: 1 MRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVG----- 54
M N + + + + + + + + ++ + L+ D
Sbjct: 15 MSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITV 74
Query: 55 -------------RILSKLHQVQPNGNINFMTGIRIAHLALKHRQGKNHKMRIIAFVGSP 101
I SK+ + + + + + K K I F
Sbjct: 75 HRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLS 134
Query: 102 VDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPNCHYNLTLST 161
+ +L + LKK +++ + D + + L T
Sbjct: 135 SRFSKSQLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGDGPF-RLGGHGPSFPLKGIT 193
Query: 162 SLEKSSACETN 172
+K
Sbjct: 194 EQQKEGLEIVK 204
Score = 43.4 bits (101), Expect = 8e-06
Identities = 4/47 (8%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 209 VDNSDFMRNGDF-LPTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMA 254
+D M N + + + + + + + + ++ + L+
Sbjct: 9 MDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFG 55
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 31.1 bits (69), Expect = 0.085
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 209 VDNSDFMRNGDFL--PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMAEK 256
VD S M T + V SK S+ + + ++ +
Sbjct: 9 VDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTE 58
Score = 30.3 bits (67), Expect = 0.15
Identities = 12/154 (7%), Positives = 38/154 (24%), Gaps = 27/154 (17%)
Query: 1 MRNGDFL--PTRLQAQQDAVNLVCHSKTRSNPENNVGLLAMADSVEVLATLTSDVGRILS 58
M T + V SK S+ + + ++ + + ++ +
Sbjct: 15 MFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQE 74
Query: 59 KLH-----------------------QVQPNGNINFMTGIRIAHLALKHRQGKNHKMRII 95
+ + + + + + Q K RI+
Sbjct: 75 LDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIM 134
Query: 96 AF--VGSPVDLEERELTKLAKRLKKEKVNVDIVS 127
F +P + + ++ + + +
Sbjct: 135 LFTNEDNPHGNDSAKASRARTKAGDLRDTGIFLD 168
>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga
maritima [TaxId: 2336]}
Length = 389
Score = 29.0 bits (63), Expect = 0.66
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFG 129
R++ SP+ R+L A+ KK V I
Sbjct: 4 RVLLTEESPI----RKLVPFAEMAKKR--GVRIHHLN 34
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis
protein RfaG {Escherichia coli [TaxId: 562]}
Length = 370
Score = 27.6 bits (59), Expect = 1.5
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 94 IIAFVGS---PVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKG 137
I+AF P +R+ ++A + +V + + E + K
Sbjct: 1 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKA 47
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 174
Score = 27.0 bits (59), Expect = 1.6
Identities = 4/40 (10%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 92 MRIIAFVGSP-VDLEERELTKLAKRLKKEKVNVDIVSFGE 130
++++ GS + A L +++++
Sbjct: 1 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG 40
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 2.0
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 82 LKHRQGKNHKMRIIAFVG-SPVDLEERELT-KLAKRLK----KEKVNVD---------IV 126
+ G N K + + + +L+E + A R++ NV +V
Sbjct: 283 MSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLV 342
Query: 127 SFGEEREGGKGQDEEEEEVQN 147
S+ +E+ G KG DEE EE+Q+
Sbjct: 343 SYWKEQAGRKGDDEELEEIQD 363
>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 166
Score = 26.7 bits (58), Expect = 2.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 92 MRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSF 128
M+++ + + E+ EL RLK+E V I SF
Sbjct: 1 MKVLFLTAN--EFEDVELIYPYHRLKEEGHEVYIASF 35
>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 25.7 bits (56), Expect = 3.0
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 80 LALKHRQGKNHKMRIIAFVGSPV 102
L + +R KM +I + G+ +
Sbjct: 81 LQIPNRSLDRAKMAVIEYKGNCL 103
>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase
{Staphylococcus aureus [TaxId: 1280]}
Length = 236
Score = 26.5 bits (58), Expect = 3.1
Identities = 7/45 (15%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 103 DLEERELTKLAKRLKKEKVNVD-IVSFGEEREGGKGQDEEEEEVQ 146
++ ++ ++ +LK + + +V++ + +GG GQ + +
Sbjct: 41 NVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLN 85
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.1 bits (56), Expect = 3.6
Identities = 11/64 (17%), Positives = 21/64 (32%)
Query: 93 RIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQDEEEEEVQNTDRPN 152
+++ G P L+KE VN +VSFG ++ + + +
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 61
Query: 153 CHYN 156
Sbjct: 62 PETQ 65
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
(SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Length = 217
Score = 25.8 bits (56), Expect = 5.3
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 92 MRIIAFVGSPVDL----EERELTKLAKRLKKEKVNVDIVSFGEEREGGKGQD--EEEEEV 145
M+ I + S + E E + + + +++ E E
Sbjct: 1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 60
Query: 146 QNTDRPNCHYNLTLSTSLEKSSACETNTSILTPLGSIPPPDL 187
+N L ++ A E + ++ P G +L
Sbjct: 61 RNVLIEAARITRGEIRPLAQADAAELDA-LIVPGGFGAAKNL 101
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 25.7 bits (55), Expect = 6.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 105 EERELTKLAKRLKKEKVNVDIVSFGEE 131
EE +L L K L V + FGE
Sbjct: 402 EEEKLLALGKLLALRGQEVSLARFGEG 428
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Length = 83
Score = 24.2 bits (53), Expect = 7.8
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 7/45 (15%)
Query: 75 IRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKE 119
+RI R+GK I +L KLA LKK+
Sbjct: 6 VRI-QRQTSGRKGK-GVCLITGVDLDDAELT-----KLAAELKKK 43
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 25.4 bits (55), Expect = 8.4
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 6/76 (7%)
Query: 72 MTGIRIAHLALKHRQGKNHKMRIIAFVGSPVDLEERELTKLAKRLKKEKVNVDIVSFGEE 131
+G+R+ AL R + +A R + + + F E+
Sbjct: 384 PSGLRLGTPALTSRGLLEKDFQKVA------HFIHRGIELTVQIQDDTGPRATLKEFKEK 437
Query: 132 REGGKGQDEEEEEVQN 147
G + ++
Sbjct: 438 LAGDEKHQRAVRALRQ 453
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 24.7 bits (53), Expect = 9.7
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 109 LTKLAKRLKKEKVNVDIVSFGEEREGGKGQ 138
+ KL + + V + R G Q
Sbjct: 23 IAKLGRYYQNLGKKVMFCAGDTFRAAGGTQ 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.367
Gapped
Lambda K H
0.267 0.0348 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 879,559
Number of extensions: 38365
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 19
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.9 bits)