Query psy14668
Match_columns 266
No_of_seqs 131 out of 361
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 17:33:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0023 SUI1 Translation initi 99.9 2.4E-22 5.1E-27 162.1 5.9 82 104-191 22-103 (104)
2 TIGR01159 DRP1 density-regulat 99.9 6E-22 1.3E-26 170.7 7.0 83 107-192 87-173 (173)
3 KOG3239|consensus 99.8 1.7E-21 3.6E-26 170.4 6.7 82 113-197 103-192 (193)
4 PRK00939 translation initiatio 99.8 2.4E-21 5.3E-26 153.7 6.3 83 102-190 17-99 (99)
5 cd00474 SUI1_eIF1 The SUI1/eIF 99.8 5E-21 1.1E-25 145.6 5.9 75 111-191 2-76 (77)
6 TIGR01158 SUI1_rel translation 99.8 6E-21 1.3E-25 151.4 6.6 82 102-189 17-99 (101)
7 PRK07451 translation initiatio 99.8 9.3E-21 2E-25 154.8 6.4 81 101-187 30-111 (115)
8 PRK09019 translation initiatio 99.8 1.2E-20 2.6E-25 152.8 5.7 82 100-187 22-104 (108)
9 PF01253 SUI1: Translation ini 99.8 9.3E-20 2E-24 137.7 6.4 77 106-186 2-82 (83)
10 PRK06824 translation initiatio 99.8 7.5E-20 1.6E-24 150.0 5.5 80 102-187 34-114 (118)
11 TIGR01160 SUI1_MOF2 translatio 99.7 3.1E-18 6.6E-23 139.0 5.9 79 108-192 25-108 (110)
12 KOG2522|consensus 99.4 2.8E-13 6E-18 132.4 4.2 86 111-200 469-559 (560)
13 KOG1770|consensus 99.1 2.5E-10 5.4E-15 93.9 6.3 82 106-192 25-110 (112)
14 PF05046 Img2: Mitochondrial l 96.8 0.0033 7.1E-08 48.9 6.0 62 113-180 16-85 (87)
15 PRK14444 acylphosphatase; Prov 87.9 1.8 3.8E-05 33.9 5.8 62 130-193 10-75 (92)
16 KOG4034|consensus 83.2 1.4 3.1E-05 39.2 3.6 66 111-180 96-167 (169)
17 PRK14434 acylphosphatase; Prov 82.1 3.6 7.7E-05 32.3 5.1 62 130-192 8-75 (92)
18 smart00653 eIF2B_5 domain pres 82.0 1.6 3.5E-05 35.7 3.3 53 129-181 20-76 (110)
19 PF01873 eIF-5_eIF-2B: Domain 80.3 2 4.2E-05 35.9 3.3 54 128-181 32-89 (125)
20 PRK14445 acylphosphatase; Prov 78.3 6.2 0.00013 30.7 5.3 64 130-195 10-77 (91)
21 PRK14438 acylphosphatase; Prov 76.8 7.2 0.00016 30.4 5.3 60 130-191 9-72 (91)
22 PRK14447 acylphosphatase; Prov 76.0 9.5 0.00021 30.0 5.8 62 130-193 10-76 (95)
23 PRK14422 acylphosphatase; Prov 75.1 9.6 0.00021 29.9 5.6 62 130-193 12-77 (93)
24 PRK03988 translation initiatio 74.3 3.5 7.6E-05 35.0 3.2 53 128-181 42-98 (138)
25 PRK14451 acylphosphatase; Prov 73.5 13 0.00027 29.1 5.9 62 130-193 9-74 (89)
26 PRK14441 acylphosphatase; Prov 72.9 12 0.00027 29.2 5.8 62 130-193 11-76 (93)
27 PRK14429 acylphosphatase; Prov 72.9 9.3 0.0002 29.6 5.0 63 130-194 8-74 (90)
28 PRK14452 acylphosphatase; Prov 72.7 8.6 0.00019 31.3 5.0 46 130-177 26-75 (107)
29 PRK14440 acylphosphatase; Prov 72.5 11 0.00023 29.5 5.4 49 130-180 9-61 (90)
30 PRK14427 acylphosphatase; Prov 72.4 11 0.00023 29.7 5.4 62 130-193 12-77 (94)
31 PRK14423 acylphosphatase; Prov 72.4 8.6 0.00019 30.0 4.8 62 130-193 11-76 (92)
32 PRK14436 acylphosphatase; Prov 72.1 17 0.00037 28.4 6.4 63 129-193 9-75 (91)
33 PRK14450 acylphosphatase; Prov 71.6 14 0.00031 28.6 5.8 60 130-193 8-74 (91)
34 TIGR00311 aIF-2beta translatio 71.0 4.6 9.9E-05 34.2 3.2 53 128-181 37-93 (133)
35 PRK14433 acylphosphatase; Prov 70.9 11 0.00024 29.2 5.1 50 130-181 7-60 (87)
36 PRK14449 acylphosphatase; Prov 70.8 12 0.00025 29.1 5.2 62 130-193 9-74 (90)
37 PRK14420 acylphosphatase; Prov 70.1 14 0.0003 28.5 5.4 63 130-194 8-74 (91)
38 PRK14425 acylphosphatase; Prov 68.2 11 0.00024 29.6 4.6 48 130-178 12-65 (94)
39 PRK14439 acylphosphatase; Prov 67.5 15 0.00033 32.6 5.7 48 130-179 81-132 (163)
40 PRK12336 translation initiatio 67.1 5.7 0.00012 35.2 3.1 53 128-181 38-94 (201)
41 PRK14432 acylphosphatase; Prov 63.5 18 0.00039 28.5 4.9 52 130-183 8-64 (93)
42 PRK14426 acylphosphatase; Prov 61.7 23 0.00049 27.6 5.2 61 130-192 10-75 (92)
43 PRK14437 acylphosphatase; Prov 59.4 23 0.00049 29.0 5.0 61 130-192 29-93 (109)
44 PRK14443 acylphosphatase; Prov 59.3 21 0.00046 28.4 4.7 48 130-179 10-61 (93)
45 PRK14448 acylphosphatase; Prov 57.7 30 0.00066 26.9 5.3 49 129-179 7-59 (90)
46 PRK14446 acylphosphatase; Prov 56.8 27 0.00058 27.4 4.8 61 130-192 8-72 (88)
47 PRK14442 acylphosphatase; Prov 55.8 30 0.00065 27.0 5.0 49 130-180 10-62 (91)
48 PRK14435 acylphosphatase; Prov 52.4 34 0.00073 26.7 4.8 50 130-181 8-61 (90)
49 PF00708 Acylphosphatase: Acyl 48.7 36 0.00079 25.8 4.3 60 129-190 9-72 (91)
50 PRK14430 acylphosphatase; Prov 47.8 72 0.0016 25.1 6.0 47 130-178 10-60 (92)
51 PRK14428 acylphosphatase; Prov 46.0 88 0.0019 25.1 6.3 61 129-191 13-77 (97)
52 PRK14424 acylphosphatase; Prov 45.9 59 0.0013 25.8 5.3 49 129-179 12-64 (94)
53 PRK14421 acylphosphatase; Prov 44.0 73 0.0016 25.6 5.6 65 129-195 9-77 (99)
54 COG1601 GCD7 Translation initi 43.1 25 0.00054 30.7 3.0 69 110-181 29-101 (151)
55 PRK14431 acylphosphatase; Prov 37.1 91 0.002 24.3 5.0 60 130-191 8-71 (89)
56 cd00367 PTS-HPr_like Histidine 30.8 1.1E+02 0.0024 22.4 4.4 47 127-179 29-75 (77)
57 PF08532 Glyco_hydro_42M: Beta 30.8 14 0.00031 31.7 -0.4 52 173-230 35-95 (207)
58 COG5163 NOP7 Protein required 27.5 16 0.00035 37.4 -0.7 60 151-211 372-447 (591)
59 PRK10897 phosphohistidinoprote 27.0 1.6E+02 0.0034 23.1 4.9 43 135-181 41-83 (90)
60 COG1872 Uncharacterized conser 26.7 60 0.0013 26.9 2.6 38 162-200 44-81 (102)
61 PF11396 DUF2874: Protein of u 26.3 55 0.0012 22.6 2.0 30 167-196 6-35 (61)
62 PRK05412 putative nucleotide-b 26.2 1.9E+02 0.0042 25.8 5.8 62 124-188 91-156 (161)
63 PRK00745 4-oxalocrotonate taut 25.6 54 0.0012 22.7 1.9 38 170-208 21-59 (62)
64 COG0497 RecN ATPase involved i 25.0 27 0.00059 36.1 0.4 75 65-148 457-536 (557)
65 PF02594 DUF167: Uncharacteris 23.2 1E+02 0.0022 23.8 3.1 33 167-200 39-71 (77)
66 PRK10738 hypothetical protein; 22.0 44 0.00095 27.6 1.0 16 64-79 33-48 (134)
67 PF00381 PTS-HPr: PTS HPr comp 21.8 1.1E+02 0.0023 22.9 3.0 41 136-180 40-80 (84)
68 COG1254 AcyP Acylphosphatases 21.1 4.1E+02 0.0089 21.2 6.2 53 129-183 9-65 (92)
69 PF10298 WhiA_N: WhiA N-termin 20.9 70 0.0015 24.2 1.8 60 149-210 10-75 (86)
70 TIGR01286 nifK nitrogenase mol 20.2 1.4E+02 0.0031 30.0 4.3 58 127-186 223-312 (515)
No 1
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.4e-22 Score=162.09 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=75.3
Q ss_pred cccccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhCCC
Q psy14668 104 LLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPE 183 (266)
Q Consensus 104 L~knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKypG 183 (266)
.++.+|+.||..+++..+|+ ||+|+||+.+++||++|||.||++|||||||++ ++|+|||||+++|.++|.++ |
T Consensus 22 ~k~~~~~V~I~~e~rr~gK~---VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~-~~IeiQGdhr~~v~~~L~~~--G 95 (104)
T COG0023 22 AKEGDQIVRIRRETRRKGKT---VTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD-GEIEIQGDHRDKVKELLIKK--G 95 (104)
T ss_pred ccccCCeEEEEEEeecCCcE---EEEEeCcccchhhHHHHHHHHHHHcCCCceecC-CEEEEeChHHHHHHHHHHHc--C
Confidence 33459999999999955699 999999999999999999999999999999975 79999999999999999997 9
Q ss_pred CCcCceEE
Q psy14668 184 IDEDFIED 191 (266)
Q Consensus 184 Ipek~Iev 191 (266)
+++++|..
T Consensus 96 ~k~k~i~~ 103 (104)
T COG0023 96 FKVKNIGI 103 (104)
T ss_pred Cchhhccc
Confidence 99999864
No 2
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=99.86 E-value=6e-22 Score=170.65 Aligned_cols=83 Identities=39% Similarity=0.556 Sum_probs=76.3
Q ss_pred ccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeec----CCcEEEEcCCchhHHHHhhhhhCC
Q psy14668 107 NKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWP 182 (266)
Q Consensus 107 nKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVk----g~~EI~IQGD~rdkV~elL~eKyp 182 (266)
..|+.+|..++|+++|. ||+|+||+.|++|++++||.|+++|||||||+ +++||+|||||+++|.++|.++||
T Consensus 87 ~~~~V~I~~~~R~krK~---VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~ 163 (173)
T TIGR01159 87 LPQKVTIKREPRTKRKF---VTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWP 163 (173)
T ss_pred CCCeEEEEEEecCCCce---EEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcC
Confidence 45677788899998899 99999999999999999999999999999885 358999999999999999999999
Q ss_pred CCCcCceEEc
Q psy14668 183 EIDEDFIEDL 192 (266)
Q Consensus 183 GIpek~Ievl 192 (266)
+||+++|+++
T Consensus 164 ~v~e~~I~~~ 173 (173)
T TIGR01159 164 EVGDKDIKDL 173 (173)
T ss_pred CCCHHHeeeC
Confidence 9999999863
No 3
>KOG3239|consensus
Probab=99.84 E-value=1.7e-21 Score=170.44 Aligned_cols=82 Identities=51% Similarity=0.794 Sum_probs=70.4
Q ss_pred eccccCC--CceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecC----CcEEEEcCCchhHHHHhhhhhCCCCCc
Q psy14668 113 LMGTTPP--SKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPEIDE 186 (266)
Q Consensus 113 v~l~kkn--RkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg----~~EI~IQGD~rdkV~elL~eKypGIpe 186 (266)
|.+.+.. ++|. ||+|+||+.|+|||+++||.|++|||||+||++ .+||+||||+.++|.++|.++||++|+
T Consensus 103 V~I~r~~R~KrK~---VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev~e 179 (193)
T KOG3239|consen 103 VIIKREARTKRKS---VTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEVPE 179 (193)
T ss_pred eEeeecccCCcee---EEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccCCc
Confidence 3444444 3456 999999999999999999999999999999996 699999999999999999999999999
Q ss_pred C--ceEEcCccCC
Q psy14668 187 D--FIEDLGDLKS 197 (266)
Q Consensus 187 k--~IevldkkKK 197 (266)
+ .|+.++++||
T Consensus 180 d~~~IED~~~kKk 192 (193)
T KOG3239|consen 180 DDVKIEDLGDKKK 192 (193)
T ss_pred ccceeecchhhhc
Confidence 9 5665555554
No 4
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.84 E-value=2.4e-21 Score=153.70 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=76.5
Q ss_pred cccccccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 102 SHLLKNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 102 etL~knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
.++++.+|.+++..++++++|+ ||+|+||+.+++|++++||.||++|||||||++ ++|+|||||+++|+++|.++
T Consensus 17 ~~~~~~~~~i~I~~ekr~~gK~---VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-~~I~iQGD~r~~v~~~L~~~- 91 (99)
T PRK00939 17 EEVAKEQQRIKIKVDKRRYGKE---VTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-GRIELQGDHRERVKELLIKM- 91 (99)
T ss_pred cccCccCceEEEEEEecCCCce---EEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-CEEEEeCcHHHHHHHHHHHc-
Confidence 4567788999999999877799 999999999999999999999999999999974 89999999999999999986
Q ss_pred CCCCcCceE
Q psy14668 182 PEIDEDFIE 190 (266)
Q Consensus 182 pGIpek~Ie 190 (266)
|+++++|+
T Consensus 92 -G~~~~~i~ 99 (99)
T PRK00939 92 -GFSEENIE 99 (99)
T ss_pred -CCChhhcC
Confidence 99999885
No 5
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.83 E-value=5e-21 Score=145.56 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=70.3
Q ss_pred eeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhCCCCCcCceE
Q psy14668 111 ASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIE 190 (266)
Q Consensus 111 LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKypGIpek~Ie 190 (266)
.++..++|+++|+ ||+|+||+.+++|++++||.||++|||||||++ ++|+||||++++|.++|.++ |+++++|+
T Consensus 2 V~I~~e~R~~~K~---VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-~~I~lQGD~r~~v~~~L~~~--g~~~~~i~ 75 (77)
T cd00474 2 VRIRIQQRNGGKT---VTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-EVIELQGDQRKKIKEFLIKM--GFAKDNIK 75 (77)
T ss_pred EEEEEEECCCCcc---EEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-CEEEEeCcHHHHHHHHHHHc--CCCHHHeE
Confidence 4678889999999 999999999999999999999999999999975 89999999999999999998 99998887
Q ss_pred E
Q psy14668 191 D 191 (266)
Q Consensus 191 v 191 (266)
+
T Consensus 76 i 76 (77)
T cd00474 76 I 76 (77)
T ss_pred e
Confidence 5
No 6
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.83 E-value=6e-21 Score=151.40 Aligned_cols=82 Identities=24% Similarity=0.290 Sum_probs=75.2
Q ss_pred cccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhh
Q psy14668 102 SHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 102 etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eK 180 (266)
...++++|.+++..++++|+ |+ ||+|+||+.+++|++++||.||++|||||||+ +++|+|||||+++|.++|.++
T Consensus 17 ~~~~~~~~~i~i~~e~rgr~gK~---VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk-~~~IeiQGD~~~~v~~~L~~~ 92 (101)
T TIGR01158 17 VAKPKEDQVVRIQRETRGRKGKG---VTIIEGLDLSDIDLKELAKELKSKCGCGGTVK-DGVIEIQGDHRDRVKDLLEKK 92 (101)
T ss_pred ccCCCCCceEEEEEEEecCCCCE---EEEEeCCcCchhhHHHHHHHHHHHhcCCeeEe-CCEEEEeCcHHHHHHHHHHHc
Confidence 34577999999999999765 99 99999999999999999999999999999996 589999999999999999997
Q ss_pred CCCCCcCce
Q psy14668 181 WPEIDEDFI 189 (266)
Q Consensus 181 ypGIpek~I 189 (266)
|++.+++
T Consensus 93 --G~~~k~~ 99 (101)
T TIGR01158 93 --GFKVKLI 99 (101)
T ss_pred --CCCeeec
Confidence 9998765
No 7
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.82 E-value=9.3e-21 Score=154.85 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=74.9
Q ss_pred ccccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhh
Q psy14668 101 VSHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE 179 (266)
Q Consensus 101 ~etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~e 179 (266)
.+++|+++|++||..++++|+ |+ ||+|+||...+.|+++|||.||++|||||||+ +++|+|||||+++|.++|.+
T Consensus 30 ~~~~~~~~~~irI~~~r~gR~GK~---VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvk-d~~IelQGD~r~~v~~~L~~ 105 (115)
T PRK07451 30 VPDLPPQQQNLRVQATRSGRKGKT---VTVITGFQHKPETLAKLLKQLKTQCGSGGTVK-DNTIEIQGDHRQKILEILIK 105 (115)
T ss_pred cCCCCccceeEEEEEEecCCCCCe---EEEEeCCCCCHHHHHHHHHHHHHHhcCCceEc-CCEEEEcCcHHHHHHHHHHH
Confidence 467899999999999999987 99 99999999999999999999999999999996 48999999999999999999
Q ss_pred hCCCCCcC
Q psy14668 180 KWPEIDED 187 (266)
Q Consensus 180 KypGIpek 187 (266)
+ |+..+
T Consensus 106 ~--Gf~~k 111 (115)
T PRK07451 106 L--GYKAK 111 (115)
T ss_pred C--CCeEe
Confidence 8 77654
No 8
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.82 E-value=1.2e-20 Score=152.77 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=75.5
Q ss_pred cccccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhh
Q psy14668 100 SVSHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIP 178 (266)
Q Consensus 100 e~etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~ 178 (266)
+.+++|+++|.+|++.++++|+ |+ ||+|+||...+.|+++|||.||++|||||||++ ++|+|||||+++|.++|.
T Consensus 22 ~~~~~~~~~~~vri~~~r~gRkGK~---VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-~~IelQGD~r~~v~~~L~ 97 (108)
T PRK09019 22 AKPERPKGDGIVRIQRQTSGRKGKG---VCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLE 97 (108)
T ss_pred ccCcCCCcCceEEEEEecCCCCCCe---EEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-CEEEEcCcHHHHHHHHHH
Confidence 4567889999999999999987 99 999999999999999999999999999999974 899999999999999999
Q ss_pred hhCCCCCcC
Q psy14668 179 EKWPEIDED 187 (266)
Q Consensus 179 eKypGIpek 187 (266)
++ |+..+
T Consensus 98 ~~--Gf~~k 104 (108)
T PRK09019 98 AK--GMKVK 104 (108)
T ss_pred HC--CCeEE
Confidence 88 77553
No 9
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.80 E-value=9.3e-20 Score=137.67 Aligned_cols=77 Identities=29% Similarity=0.343 Sum_probs=63.5
Q ss_pred cccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeec----CCcEEEEcCCchhHHHHhhhhhC
Q psy14668 106 KNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 106 knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVk----g~~EI~IQGD~rdkV~elL~eKy 181 (266)
+..+..+|..++++.+|. ||+|+||+.|++|++++||+|+++|||||||. ++++|+||||++++|.++|.++|
T Consensus 2 ~~~~~I~I~~e~r~~~K~---vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~ 78 (83)
T PF01253_consen 2 KEPPKIHIRVEKRRGRKF---VTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG 78 (83)
T ss_dssp S-TTCEEEEEEESSSSEE---EEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC
T ss_pred CCCCEEEEEEEeCcCCeE---EEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC
Confidence 356788888888877899 89999999999999999999999999999994 25899999999999999999997
Q ss_pred CCCCc
Q psy14668 182 PEIDE 186 (266)
Q Consensus 182 pGIpe 186 (266)
++|+
T Consensus 79 -~~~k 82 (83)
T PF01253_consen 79 -GIPK 82 (83)
T ss_dssp -SSE-
T ss_pred -CCCC
Confidence 5553
No 10
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.79 E-value=7.5e-20 Score=149.99 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=73.1
Q ss_pred cccccccceeeeccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhh
Q psy14668 102 SHLLKNKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 102 etL~knKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eK 180 (266)
.++|+++|.+||+.++++|+ |+ ||+|+||...+.|+++|||.||++|||||||++ ++|+|||||+++|.++|.++
T Consensus 34 ~~~~~~~~~vri~~~~kgr~gK~---VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-~~IeiQGD~r~~v~~~L~~~ 109 (118)
T PRK06824 34 AAAPAGDGIVRVRRETKGRGGKT---VTVITGVPLAEDALKELAKELKRRCGTGGTLKD-GVIEIQGDHVELLLAELLKR 109 (118)
T ss_pred ccCCCcCceEEEEEEEccCCCce---EEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-CEEEEcCcHHHHHHHHHHHC
Confidence 45677888999999999877 99 999999999999999999999999999999974 89999999999999999998
Q ss_pred CCCCCcC
Q psy14668 181 WPEIDED 187 (266)
Q Consensus 181 ypGIpek 187 (266)
|+..+
T Consensus 110 --G~~~k 114 (118)
T PRK06824 110 --GFKAK 114 (118)
T ss_pred --CCeEe
Confidence 77654
No 11
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.73 E-value=3.1e-18 Score=139.02 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=67.9
Q ss_pred cceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecC----CcEEEEcCCchhHHHHhhhhhCCC
Q psy14668 108 KKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPE 183 (266)
Q Consensus 108 KQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg----~~EI~IQGD~rdkV~elL~eKypG 183 (266)
++...|..++|+.+|+ ||+|+||. .++||+++||.||++|||||||++ +++|+||||++++|.++|.++ |
T Consensus 25 ~~~I~Iri~qR~grK~---VTiI~Gl~-~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~--g 98 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKT---LTTVQGLP-KEYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQ--G 98 (110)
T ss_pred cceEEEEEEEccCCcc---EEEEeccC-ChHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHc--C
Confidence 4455666666666688 99999999 599999999999999999999984 269999999999999999998 6
Q ss_pred -CCcCceEEc
Q psy14668 184 -IDEDFIEDL 192 (266)
Q Consensus 184 -Ipek~Ievl 192 (266)
+++++|.+.
T Consensus 99 ~~~~~~i~vh 108 (110)
T TIGR01160 99 LLKKDQIKIH 108 (110)
T ss_pred CCCHHHeeec
Confidence 688888774
No 12
>KOG2522|consensus
Probab=99.37 E-value=2.8e-13 Score=132.38 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=76.7
Q ss_pred eeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeec-----CCcEEEEcCCchhHHHHhhhhhCCCCC
Q psy14668 111 ASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVT-----GDDEIVIQGDVKDDLFDVIPEKWPEID 185 (266)
Q Consensus 111 LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVk-----g~~EI~IQGD~rdkV~elL~eKypGIp 185 (266)
.+++.++|..+|. ||+|+|||.|++|+..+|..|+++|+|+.||. ++-|++|||++.+-|+++|.+.| |||
T Consensus 469 i~i~te~RagnKk---VT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~y-gip 544 (560)
T KOG2522|consen 469 IKIITEMRAGNKK---VTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSY-GIP 544 (560)
T ss_pred eEEeehhhccCce---EEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhh-CCC
Confidence 3455666655566 88999999999999999999999999999997 34799999999999999999999 999
Q ss_pred cCceEEcCccCCCcc
Q psy14668 186 EDFIEDLGDLKSPTY 200 (266)
Q Consensus 186 ek~IevldkkKKkK~ 200 (266)
.++|++.|+.+|||+
T Consensus 545 kK~I~gleka~Kkkk 559 (560)
T KOG2522|consen 545 KKWIDGLEKAKKKKK 559 (560)
T ss_pred HHHHhHHHHhhcccC
Confidence 999999999998875
No 13
>KOG1770|consensus
Probab=99.07 E-value=2.5e-10 Score=93.88 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=71.2
Q ss_pred cccceeeeccccCCCceeEeEeeeEeccCCCCCCHHHHHHHHhccccceeeecCC----cEEEEcCCchhHHHHhhhhhC
Q psy14668 106 KNKKLASLMGTTPPSKKTVQKTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 106 knKQ~LKv~l~kknRkKtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~----~EI~IQGD~rdkV~elL~eKy 181 (266)
-.++..++..+.||-+|+ +|.|.|+-. +.|++.+-+.||++|||+|+|.++ +.|++|||+|++|.++|.+.-
T Consensus 25 g~~~~ihIRIQQRnGrKt---lTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g 100 (112)
T KOG1770|consen 25 GTEKYIHIRIQQRNGRKT---LTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG 100 (112)
T ss_pred CccceEEEEEEeeCCceE---EEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc
Confidence 345599999999998899 777999976 789999999999999999999842 689999999999999999984
Q ss_pred CCCCcCceEEc
Q psy14668 182 PEIDEDFIEDL 192 (266)
Q Consensus 182 pGIpek~Ievl 192 (266)
.+.+++|++.
T Consensus 101 -~~k~~~ikih 110 (112)
T KOG1770|consen 101 -LVKKDNIKIH 110 (112)
T ss_pred -cccccceeec
Confidence 6788888764
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=96.84 E-value=0.0033 Score=48.93 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=45.8
Q ss_pred eccccCCCc-eeEeEeeeEeccCCCCCCHHHHHHHHhccccce------eeec-CCcEEEEcCCchhHHHHhhhhh
Q psy14668 113 LMGTTPPSK-KTVQKTSYTEAQFPLSSDPIVASKFFGTRFACG------SSVT-GDDEIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 113 v~l~kknRk-KtI~kVT~IsGLE~FgIDLKeLAK~LKKKFACG------gSVk-g~~EI~IQGD~rdkV~elL~eK 180 (266)
|-.+.++++ +. +|+|.-.++ |+..|.+.|++-++-. ..|. -.+.|+|+||++++|.++|.++
T Consensus 16 VY~~~k~~g~~~---~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 16 VYLDIKNGGNRK---ITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred EEEEEeCCCcEe---EEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccHHHHHHHHHHC
Confidence 444555555 66 555666666 8899999999888633 3343 2489999999999999999887
No 15
>PRK14444 acylphosphatase; Provisional
Probab=87.85 E-value=1.8 Score=33.91 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=42.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+-.-..++.++++++-.|.|+ .++ ||++||+- ++|.+|+..-..+=+...|+-++
T Consensus 10 v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~i~ 75 (92)
T PRK14444 10 ISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWCYSGPSHARVERVE 75 (92)
T ss_pred EEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 677766 7788888999999999999998 234 99999995 44666665543232334454443
No 16
>KOG4034|consensus
Probab=83.18 E-value=1.4 Score=39.24 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=41.4
Q ss_pred eeeccccCCCc-eeEeEeeeEeccCCC----CCCHHHHHHHHhccccceeeecC-CcEEEEcCCchhHHHHhhhhh
Q psy14668 111 ASLMGTTPPSK-KTVQKTSYTEAQFPL----SSDPIVASKFFGTRFACGSSVTG-DDEIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 111 LKv~l~kknRk-KtI~kVT~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg-~~EI~IQGD~rdkV~elL~eK 180 (266)
|=+-++.++|+ |. +|+|.-.|+- ..||.+.-++.-++-=| .-|.. .++|.+-||+.+.|.++|.+|
T Consensus 96 lPVYl~~k~~G~k~---lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~VnelsgqI~~~g~~v~~vr~~L~eK 167 (169)
T KOG4034|consen 96 LPVYLDYKQRGNKI---LTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNELSGQIVLKGNHVDTVREWLQEK 167 (169)
T ss_pred cceEEeeecCCcEE---EEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhhcceEEEeCChHHHHHHHHHHc
Confidence 33566778888 88 4555555552 23454444433332222 22321 279999999999999999998
No 17
>PRK14434 acylphosphatase; Provisional
Probab=82.08 E-value=3.6 Score=32.33 Aligned_cols=62 Identities=15% Similarity=0.018 Sum_probs=41.8
Q ss_pred EeccCCCCCCHHHHHHHHhcccc-ceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCC-cCceEEc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFA-CGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEID-EDFIEDL 192 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFA-CGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIp-ek~Ievl 192 (266)
|+|... |+=.-.....++++++ -.|.|. .++ ||++||+-.+.|.+|+..-..|-| ...|+-+
T Consensus 8 v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v 75 (92)
T PRK14434 8 VSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYV 75 (92)
T ss_pred EEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 566555 5666777888889999 999997 234 999999865556666554433444 4445443
No 18
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=82.04 E-value=1.6 Score=35.73 Aligned_cols=53 Identities=11% Similarity=0.239 Sum_probs=43.5
Q ss_pred eEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 129 YTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 129 ~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
+|.+|..- .-|++-+.|.|...+|+.|++.+++..+|+|.+..+-++-+.++|
T Consensus 20 vi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 20 VIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred EEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHH
Confidence 46666543 457889999999999999999766999999999988887777766
No 19
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=80.30 E-value=2 Score=35.91 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=42.3
Q ss_pred eeEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 128 SYTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 128 T~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
|+|.+|... .-|++-+.|.|...+|+.|++.+++..+|+|.|..+-++-+..+|
T Consensus 32 Tvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~f 89 (125)
T PF01873_consen 32 TVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDKF 89 (125)
T ss_dssp EEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHHH
T ss_pred eeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHHH
Confidence 346666643 348899999999999999999766999999999877666555554
No 20
>PRK14445 acylphosphatase; Provisional
Probab=78.32 E-value=6.2 Score=30.67 Aligned_cols=64 Identities=11% Similarity=-0.021 Sum_probs=43.1
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcCcc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 195 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievldkk 195 (266)
|+|... |+-.-...+.++++++-.|.|. .++ ||++||+-.+ |.+++..-..+=+...|+.++..
T Consensus 10 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 10 VSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred EEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEEEEE
Confidence 566666 6777888999999999999998 234 9999998743 66655544323233445544433
No 21
>PRK14438 acylphosphatase; Provisional
Probab=76.78 E-value=7.2 Score=30.37 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=40.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEE
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIED 191 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Iev 191 (266)
|+|... |+-.-...+.++.+++-.|.|. .++ ||.+||+- ++|.+|+..-..+=|...|+-
T Consensus 9 v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~ 72 (91)
T PRK14438 9 VKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDWCHHGPSRARVSG 72 (91)
T ss_pred EEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHHHhhCCCCcEEEE
Confidence 566665 6777788899999999999998 234 99999985 446666554332323333444
No 22
>PRK14447 acylphosphatase; Provisional
Probab=75.98 E-value=9.5 Score=29.98 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=42.5
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc---EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD---EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~---EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+=.--..+.++++++-.|.|. .++ ||++||+ .+.|.+++..-..|=+...|+.++
T Consensus 10 v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v~ 76 (95)
T PRK14447 10 IRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDVE 76 (95)
T ss_pred EEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEEE
Confidence 677766 7888888999999999999998 234 8888998 566666655332132333444443
No 23
>PRK14422 acylphosphatase; Provisional
Probab=75.11 E-value=9.6 Score=29.92 Aligned_cols=62 Identities=5% Similarity=-0.024 Sum_probs=42.2
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+-.-...+.++.+++-.|.|. .++ ||++||+-.. |.+++..-..|=|...|+-++
T Consensus 12 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~i~ 77 (93)
T PRK14422 12 VHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDKVV 77 (93)
T ss_pred EEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEEEE
Confidence 577666 7888888999999999999998 234 9999998754 555554433242233344433
No 24
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=74.29 E-value=3.5 Score=35.04 Aligned_cols=53 Identities=11% Similarity=0.300 Sum_probs=43.6
Q ss_pred eeEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 128 SYTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 128 T~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
|+|.+|..- .-|.+-+.|.|.+.+|+.|++ +++..+|+|.+..+.++-+.++|
T Consensus 42 Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~~~~lii~G~~~~~~i~~~L~~y 98 (138)
T PRK03988 42 TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-EGGRLILQGKFSPRVINEKIDRY 98 (138)
T ss_pred EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-cCCEEEEEEeeCHHHHHHHHHHH
Confidence 456676544 457888999999999999999 56999999999988888777766
No 25
>PRK14451 acylphosphatase; Provisional
Probab=73.48 E-value=13 Score=29.06 Aligned_cols=62 Identities=8% Similarity=-0.065 Sum_probs=43.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec---CC-cEEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT---GD-DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk---g~-~EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+-.....+.++.+++..|.|+ ++ =||++||+- +.|.+|+..-..|-+...|+-++
T Consensus 9 V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 74 (89)
T PRK14451 9 ISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKE-DKLEEFYTWLQKGPLNARVDVCT 74 (89)
T ss_pred EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 677776 7888889999999999999998 22 499999986 34666655543233344454443
No 26
>PRK14441 acylphosphatase; Provisional
Probab=72.92 E-value=12 Score=29.23 Aligned_cols=62 Identities=8% Similarity=-0.013 Sum_probs=40.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+=.-.....++++++-.|.|. .++ ||++||+-. .|.+++..-..+=|...|+.++
T Consensus 11 v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~ 76 (93)
T PRK14441 11 VSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERA-AVGALVRWCHAGPPAARVDRVE 76 (93)
T ss_pred EEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEE
Confidence 567666 6777888899999999999998 234 999999843 4555443332122334455443
No 27
>PRK14429 acylphosphatase; Provisional
Probab=72.92 E-value=9.3 Score=29.63 Aligned_cols=63 Identities=14% Similarity=-0.009 Sum_probs=40.4
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcCc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 194 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievldk 194 (266)
|+|-.. |+=.-...+.++.+++-.|.|. .++ ||++||+-.+ |.+++..-..|-|...|+-++.
T Consensus 8 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i~~ 74 (90)
T PRK14429 8 LTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRVTV 74 (90)
T ss_pred EEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEEE
Confidence 455554 5666777888889999999998 234 9999998753 5555443322423344554433
No 28
>PRK14452 acylphosphatase; Provisional
Probab=72.67 E-value=8.6 Score=31.35 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=37.1
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCchhHHHHhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVI 177 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~rdkV~elL 177 (266)
|+|... |+-.-.....++++++-.|.|. .+ =||++||+.. .|.+|+
T Consensus 26 V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 26 IEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 678776 7888889999999999999998 22 4999999964 566663
No 29
>PRK14440 acylphosphatase; Provisional
Probab=72.54 E-value=11 Score=29.46 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=35.2
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eK 180 (266)
|+|... |+=.....+.++.+++-.|.|. .++ ||.+||+- +.|.+++..-
T Consensus 9 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l 61 (90)
T PRK14440 9 VYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLERI 61 (90)
T ss_pred EEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHHH
Confidence 555554 5666777888888889999997 234 99999977 5566665443
No 30
>PRK14427 acylphosphatase; Provisional
Probab=72.39 E-value=11 Score=29.68 Aligned_cols=62 Identities=8% Similarity=-0.009 Sum_probs=41.9
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+-.-...+.++.+++-.|.|. .++ ||++||+..+ |.+|+..-..+=|...|+-++
T Consensus 12 v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i~ 77 (94)
T PRK14427 12 VFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERVD 77 (94)
T ss_pred EEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEEE
Confidence 566665 6777888999999999999998 234 9999998743 666655443232233344433
No 31
>PRK14423 acylphosphatase; Provisional
Probab=72.37 E-value=8.6 Score=30.00 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=42.2
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|-.. |+-.-...+.++++++-.|.|. .++ ||++||+-. .|.+++..-..+-|...|+.++
T Consensus 11 v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~ 76 (92)
T PRK14423 11 VSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDVE 76 (92)
T ss_pred EEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEE
Confidence 567666 6777888999999999999998 234 999999865 4555554433233344444433
No 32
>PRK14436 acylphosphatase; Provisional
Probab=72.06 E-value=17 Score=28.39 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=43.6
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
+|+|... |+-.....+.++.+++-.|.|. .++ ||++||+- ++|.+|+..-..+-|...|+-++
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~gp~~a~V~~v~ 75 (91)
T PRK14436 9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGWAHQGPPLARVTRVE 75 (91)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHHhhCCCceEEEEEE
Confidence 3677666 7888888999999999999998 234 99999986 44777765543233334444433
No 33
>PRK14450 acylphosphatase; Provisional
Probab=71.59 E-value=14 Score=28.59 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=41.4
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc---EEEEcCC--chhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD---EIVIQGD--VKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~---EI~IQGD--~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+-.....+.++.+++-.|.|. .++ ||++||+ ..++..+.|. + +=|...|+-++
T Consensus 8 v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~--gp~~a~V~~v~ 74 (91)
T PRK14450 8 VKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-S--GPPRAEVKEVE 74 (91)
T ss_pred EEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-h--CCCCcEEEEEE
Confidence 667666 6778888999999999999998 233 8899998 4455555564 3 32334454444
No 34
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=71.05 E-value=4.6 Score=34.17 Aligned_cols=53 Identities=11% Similarity=0.199 Sum_probs=43.4
Q ss_pred eeEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 128 SYTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 128 T~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
|+|.+|..- .-|.+-+.|.|...+|+.|++. ++..+|+|.+..+.++-+.++|
T Consensus 37 Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-~~rlii~G~~~~~~i~~~L~~y 93 (133)
T TIGR00311 37 TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-GGRLILQGKFTHFLLNERIEDY 93 (133)
T ss_pred EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-CCEEEEEeecCHHHHHHHHHHH
Confidence 556776544 4578889999999999999995 5899999999998887777766
No 35
>PRK14433 acylphosphatase; Provisional
Probab=70.88 E-value=11 Score=29.20 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=37.4
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKy 181 (266)
|+|... |+-.-...+.++.+++-.|.|. .++ ||++|||-. .|.+++..-.
T Consensus 7 v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~ 60 (87)
T PRK14433 7 VSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWLR 60 (87)
T ss_pred EEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHh
Confidence 566444 6777788899999999999998 234 999999964 6766665543
No 36
>PRK14449 acylphosphatase; Provisional
Probab=70.78 E-value=12 Score=29.07 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=43.2
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCchhHHHHhhhhhCCCCCcCceEEcC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 193 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~rdkV~elL~eKypGIpek~Ievld 193 (266)
|+|... |+-.....+.++.+++-.|.|. .+ =||++||+-. .|.+++..-..+-|...|+-++
T Consensus 9 v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~l~~~~~~a~V~~i~ 74 (90)
T PRK14449 9 ITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEE-NIKELINFIKTGLRWARVDNVE 74 (90)
T ss_pred EEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEEE
Confidence 577554 7888888999999999999998 22 4999999873 3666655543233444555544
No 37
>PRK14420 acylphosphatase; Provisional
Probab=70.14 E-value=14 Score=28.52 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=41.0
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCcCceEEcCc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 194 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpek~Ievldk 194 (266)
|+|-.. |+=.-.....++.+++-.|.|+ .++ ||++||+- +.|.+|+..-..+-|...|+-++.
T Consensus 8 v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i~~ 74 (91)
T PRK14420 8 VDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDVHI 74 (91)
T ss_pred EEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEEE
Confidence 455554 5666677888888899999998 234 99999974 666666655433433344554433
No 38
>PRK14425 acylphosphatase; Provisional
Probab=68.18 E-value=11 Score=29.58 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=35.4
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCch--hHHHHhhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVK--DDLFDVIP 178 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~r--dkV~elL~ 178 (266)
|+|... |+-.-...+.++.+++-.|.|+ .+ =||++||+-. ++..+.|.
T Consensus 12 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 12 ITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 566665 6777888899999999999998 22 4999999765 44444443
No 39
>PRK14439 acylphosphatase; Provisional
Probab=67.48 E-value=15 Score=32.61 Aligned_cols=48 Identities=8% Similarity=0.109 Sum_probs=36.7
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPE 179 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~e 179 (266)
|+|..+ |+-.-...+.++.+++-.|.|. .++ ||++||+-.. |.+++..
T Consensus 81 VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~-Ie~Fi~~ 132 (163)
T PRK14439 81 VYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQ-VEKLMQW 132 (163)
T ss_pred EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHH
Confidence 677766 7888888999999999999998 234 9999998743 5555443
No 40
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=67.12 E-value=5.7 Score=35.17 Aligned_cols=53 Identities=11% Similarity=0.217 Sum_probs=42.4
Q ss_pred eeEeccCCC----CCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 128 SYTEAQFPL----SSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 128 T~IsGLE~F----gIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
|+|.+|..- .-|.+-+.|.|...+|+.|++. ++..+|+|.|..+-++-+..+|
T Consensus 38 T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-~~~~ii~G~~~~~~i~~~l~~y 94 (201)
T PRK12336 38 TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-GGRAVFNGKFTEEDIQAAIDAY 94 (201)
T ss_pred EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-CCEEEEEeeeCHHHHHHHHHHH
Confidence 567777654 4578899999999999999995 5899999999887777665554
No 41
>PRK14432 acylphosphatase; Provisional
Probab=63.51 E-value=18 Score=28.48 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=36.9
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEc-CCchhHHHHhhhhhCCC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQ-GDVKDDLFDVIPEKWPE 183 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQ-GD~rdkV~elL~eKypG 183 (266)
|+|-.. |+-.....+.++++++-.|.|. .++ ||++| ||- +.|.+++..-..|
T Consensus 8 v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~g 64 (93)
T PRK14432 8 ISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNG 64 (93)
T ss_pred EEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhC
Confidence 556555 5667778888889999999998 234 89998 885 5566666544334
No 42
>PRK14426 acylphosphatase; Provisional
Probab=61.66 E-value=23 Score=27.65 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=40.5
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhhhCCCCCc-CceEEc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDE-DFIEDL 192 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~eKypGIpe-k~Ievl 192 (266)
|+|-.. |+-.....+.++++++-.|.|. .++ ||++||+-. +|.+++..-..|-|+ ..|+-+
T Consensus 10 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~g~P~~a~V~~i 75 (92)
T PRK14426 10 VYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEE-QVEKLMEWLKEGGPRSARVDRV 75 (92)
T ss_pred EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHH-HHHHHHHHHhcCCCCCeEEEEE
Confidence 566655 6777888889999999999998 223 999999853 355555443334333 334443
No 43
>PRK14437 acylphosphatase; Provisional
Probab=59.37 E-value=23 Score=28.96 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=41.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec---CC-cEEEEcCCchhHHHHhhhhhCCCCCcCceEEc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT---GD-DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDL 192 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk---g~-~EI~IQGD~rdkV~elL~eKypGIpek~Ievl 192 (266)
|+|... |+-.....+.++.+++-.|.|. ++ =||++||+-. .|.+++..-..+=|...|+-+
T Consensus 29 V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~i 93 (109)
T PRK14437 29 VSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSNV 93 (109)
T ss_pred EEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEEE
Confidence 677776 7888889999999999999998 22 4999999875 455544433313233444443
No 44
>PRK14443 acylphosphatase; Provisional
Probab=59.35 E-value=21 Score=28.35 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=35.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeecC--C--cEEEEcCCchhHHHHhhhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVTG--D--DEIVIQGDVKDDLFDVIPE 179 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVkg--~--~EI~IQGD~rdkV~elL~e 179 (266)
|+|... |+-....++.++.+++-.|.|.. + =||++||+-.+ |.+++..
T Consensus 10 v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~ 61 (93)
T PRK14443 10 VTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEEN-LNKFIDA 61 (93)
T ss_pred EEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHH-HHHHHHH
Confidence 677666 67778889999999999999982 2 49999998433 4444444
No 45
>PRK14448 acylphosphatase; Provisional
Probab=57.66 E-value=30 Score=26.92 Aligned_cols=49 Identities=12% Similarity=-0.030 Sum_probs=36.8
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhh
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPE 179 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~e 179 (266)
+|+|... |+-.-...+.++.+++-.|.|. .++ ||++||+-. +|.+++..
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~v~~f~~~ 59 (90)
T PRK14448 7 IVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDA-QIAAFRDW 59 (90)
T ss_pred EEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 3667666 7788888899999999999998 234 999999873 35555544
No 46
>PRK14446 acylphosphatase; Provisional
Probab=56.77 E-value=27 Score=27.42 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=41.8
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec---CC-cEEEEcCCchhHHHHhhhhhCCCCCcCceEEc
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT---GD-DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDL 192 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk---g~-~EI~IQGD~rdkV~elL~eKypGIpek~Ievl 192 (266)
|+|... |+=..-....++++++-.|.|. ++ =||++||+-. .+.+++..-..+=|...|+-+
T Consensus 8 v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v 72 (88)
T PRK14446 8 VSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAV 72 (88)
T ss_pred EEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEE
Confidence 566665 6777788999999999999998 22 4999999864 555555443323344455543
No 47
>PRK14442 acylphosphatase; Provisional
Probab=55.82 E-value=30 Score=27.00 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=37.6
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec---CC-cEEEEcCCchhHHHHhhhhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT---GD-DEIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk---g~-~EI~IQGD~rdkV~elL~eK 180 (266)
|+|... |+-.-...+.++++++-.|.|+ ++ =||++||+.. .|.+++..-
T Consensus 10 v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l 62 (91)
T PRK14442 10 VGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERWL 62 (91)
T ss_pred EEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHH
Confidence 677766 6778888999999999999998 22 4999999876 466665443
No 48
>PRK14435 acylphosphatase; Provisional
Probab=52.39 E-value=34 Score=26.67 Aligned_cols=50 Identities=14% Similarity=0.033 Sum_probs=37.1
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec---CC-cEEEEcCCchhHHHHhhhhhC
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT---GD-DEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk---g~-~EI~IQGD~rdkV~elL~eKy 181 (266)
|+|... |+-.....+.++.+++-.|.|+ ++ =||++||+- ++|.+++..-.
T Consensus 8 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~l~ 61 (90)
T PRK14435 8 VEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNEVA 61 (90)
T ss_pred EEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHHHh
Confidence 566665 6777888888899999999998 22 499999987 44666655443
No 49
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=48.67 E-value=36 Score=25.78 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=40.8
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCchhHHHHhhhhhCCCCCcCceE
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIE 190 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~rdkV~elL~eKypGIpek~Ie 190 (266)
+|+|... |+=.-...+.++.+++-.|.|. .+ =||++||+- ++|.+++..-..|-|...|+
T Consensus 9 ~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~-~~l~~f~~~l~~g~p~a~V~ 72 (91)
T PF00708_consen 9 IVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEE-EQLEEFIKWLKKGPPPARVD 72 (91)
T ss_dssp EEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEH-HHHHHHHHHHHHSSTTSEEE
T ss_pred EEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCH-HHHHHHHHHHHhCCCCcEEE
Confidence 3788666 8999999999999999999998 22 499999954 44555544433233334443
No 50
>PRK14430 acylphosphatase; Provisional
Probab=47.76 E-value=72 Score=25.05 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=33.4
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhh
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIP 178 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~ 178 (266)
|+|-.. |+-.-.....++.+++-.|.|. .++ ||++||+- +.|.+++.
T Consensus 10 v~G~VQ-GVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~-~~i~~f~~ 60 (92)
T PRK14430 10 AHGRVQ-GVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTV-RQLEALRA 60 (92)
T ss_pred EEEeec-ceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHH
Confidence 556555 5666777888888899999997 234 99999975 44444443
No 51
>PRK14428 acylphosphatase; Provisional
Probab=46.01 E-value=88 Score=25.07 Aligned_cols=61 Identities=11% Similarity=-0.019 Sum_probs=42.4
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCchhHHHHhhhhhCCCCCcCceEE
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIED 191 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~rdkV~elL~eKypGIpek~Iev 191 (266)
.|+|... |+=.--..+.++++++-.|.|. .+ =||++||+- +.|.+|+..-..+=|...|+-
T Consensus 13 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~ 77 (97)
T PRK14428 13 VVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSH 77 (97)
T ss_pred EEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEE
Confidence 3677766 7778888999999999999998 22 499999985 556666655432333344443
No 52
>PRK14424 acylphosphatase; Provisional
Probab=45.91 E-value=59 Score=25.81 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=36.7
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CCc--EEEEcCCchhHHHHhhhh
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPE 179 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~~--EI~IQGD~rdkV~elL~e 179 (266)
+|+|-.. |+-.....+.++.+++-.|.|+ .++ ||++||+-.. |.+++..
T Consensus 12 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-v~~f~~~ 64 (94)
T PRK14424 12 RVRGVVQ-GVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQ-IDRMLAW 64 (94)
T ss_pred EEEEeec-CCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHH-HHHHHHH
Confidence 3677666 6778888889999999999998 223 9999998743 5555443
No 53
>PRK14421 acylphosphatase; Provisional
Probab=44.04 E-value=73 Score=25.61 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=42.9
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCchhHHHHhhhhhCCCCCcCceEEcCcc
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 195 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~rdkV~elL~eKypGIpek~Ievldkk 195 (266)
+|+|... |+-.....+.++++++-.|.|+ .+ =||++||+-.+ |.+++..-..+=+...|+-++..
T Consensus 9 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~v~~~ 77 (99)
T PRK14421 9 TIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDAVEDE 77 (99)
T ss_pred EEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEEEEEE
Confidence 3677666 6778888899999999999998 22 49999998753 55555443323234445444433
No 54
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=43.10 E-value=25 Score=30.68 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=45.9
Q ss_pred eeeeccccCCCceeEeEeeeEeccC----CCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 110 LASLMGTTPPSKKTVQKTSYTEAQF----PLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 110 ~LKv~l~kknRkKtI~kVT~IsGLE----~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
+.+++.-.-++.-. .|++..+. ...-|++-+.|.|++-.|+.|++.+.+..++||-+.++.+.--.+.|
T Consensus 29 R~~ip~~~i~~~g~---~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~~~rlvl~g~f~~~~i~~~i~~y 101 (151)
T COG1601 29 RFRIPEPEINREGN---RTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDGKGRLVLQGKFSDSEIVNEIERY 101 (151)
T ss_pred ceecCCcceecccc---hhHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCCcceEEEEecccHHHHHHHHHHH
Confidence 45555433333311 34445543 22458889999999999999999866899999988776655444443
No 55
>PRK14431 acylphosphatase; Provisional
Probab=37.10 E-value=91 Score=24.35 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=39.7
Q ss_pred EeccCCCCCCHHHHHHHHhccccceeeec---CCcEEEEcCCchhHHHHhhhhhCCCCC-cCceEE
Q psy14668 130 TEAQFPLSSDPIVASKFFGTRFACGSSVT---GDDEIVIQGDVKDDLFDVIPEKWPEID-EDFIED 191 (266)
Q Consensus 130 IsGLE~FgIDLKeLAK~LKKKFACGgSVk---g~~EI~IQGD~rdkV~elL~eKypGIp-ek~Iev 191 (266)
|+|... |+=..-..+.++++++-.|.|. +.=||++||+- +.|.+++..-..|-| ...|+-
T Consensus 8 v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dgVei~~qG~~-~~l~~f~~~l~~g~p~~a~V~~ 71 (89)
T PRK14431 8 VFGRVQ-GVGFRYFTQRIAMNYNIVGTVQNVDDYVEIYAQGDD-ADLERFIQGVIEGASPASNVTS 71 (89)
T ss_pred EEEecC-CeeEhHHHHHHHhhcCCEEEEEECCCcEEEEEEcCH-HHHHHHHHHHhcCCCCcEEEEE
Confidence 566665 6777788899999999999998 22599999975 335555444332442 344443
No 56
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=30.80 E-value=1.1e+02 Score=22.45 Aligned_cols=47 Identities=6% Similarity=0.190 Sum_probs=34.3
Q ss_pred eeeEeccCCCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhh
Q psy14668 127 TSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE 179 (266)
Q Consensus 127 VT~IsGLE~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~e 179 (266)
|++..+ +..+|.|.+-..+.=....|..+ +|.+.|+-.+++.+-|.+
T Consensus 29 v~i~~~--~~~vdakSil~i~~L~~~~G~~i----~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 29 ITLRKG--GRKANAKSILGLMSLGAKQGDEI----TLSAEGEDAEEALEALAE 75 (77)
T ss_pred EEEEEC--CEEEcHHhHHHHHHcCCCCCCEE----EEEEECcCHHHHHHHHHH
Confidence 444444 55688888888888777777666 678889888888877754
No 57
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=30.78 E-value=14 Score=31.71 Aligned_cols=52 Identities=31% Similarity=0.479 Sum_probs=26.4
Q ss_pred HHHhhhhhCCCCCcCceEEcCccCCCcccccceecCceEEE---------EEEccCceEEEEeeccc
Q psy14668 173 LFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTHIII---------SWVQPNGTLLLTMRSCF 230 (266)
Q Consensus 173 V~elL~eKypGIpek~IevldkkKKkK~n~~~~~lp~~~il---------~~~~~~~~~~~~~~~~~ 230 (266)
.-..|.+. ||+.+.|...++..+ -+--++|-.+++ .||+-+|+|+++.|+-+
T Consensus 35 ~y~al~~~--gi~vDvv~~~~dL~~----Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~~~tg~ 95 (207)
T PF08532_consen 35 WYRALREL--GIPVDVVSPDDDLSG----YKLLVLPSLYILSPEFAERLRAYVENGGTLILTPRTGV 95 (207)
T ss_dssp HHHHHHTT--T--EEEE-TTS--TT-----SEEEES--SC--HHH---HHHHHT-SS-EEE-TTTT-
T ss_pred HHHHHHHc--CCceEEecCcCCccc----CcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEEcccCC
Confidence 33456555 999987766543332 223467888766 48999999999998843
No 58
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=27.54 E-value=16 Score=37.37 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=36.1
Q ss_pred ccceeeecCCcEEEEcCCchhHHHHh----------hhhhCCC---CCcCceEE-cCccCCCccc--ccceecCceE
Q psy14668 151 FACGSSVTGDDEIVIQGDVKDDLFDV----------IPEKWPE---IDEDFIED-LGDLKSPTYN--IAYYVLPTHI 211 (266)
Q Consensus 151 FACGgSVkg~~EI~IQGD~rdkV~el----------L~eKypG---Ipek~Iev-ldkkKKkK~n--~~~~~lp~~~ 211 (266)
.+|||+|.+ +-++-||...+++-.. |..++-| |.+.|+.. +.+.+...-+ --+.-||||+
T Consensus 372 lscGG~V~~-~p~~~~i~~~~~vD~~vth~i~drp~~~~kvegrtYiQPQw~fDsiNkG~l~~~~~Y~~G~~LPpHl 447 (591)
T COG5163 372 LSCGGSVVG-SPCEADIHVSEKVDEKVTHQIVDRPVMKNKVEGRTYIQPQWLFDSINKGKLACVENYCVGKRLPPHL 447 (591)
T ss_pred HHcCCcccC-chhhccCCchhhccchhhhhhccchhhhhhhcceeeechHHHHhhhccccchhhhhccccccCCCCc
Confidence 589999974 6777777777766553 2223322 45666654 4444433322 3467899996
No 59
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=27.01 E-value=1.6e+02 Score=23.11 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhhC
Q psy14668 135 PLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 181 (266)
Q Consensus 135 ~FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eKy 181 (266)
+..+|.|.+-..++=...+|..| +|.+.|+-.++.++-|.+-+
T Consensus 41 g~~~~akSil~lm~Lg~~~G~~i----~v~~~G~De~~A~~~l~~~~ 83 (90)
T PRK10897 41 GTEAEANSVIALLMLDSAKGRQI----EVEATGPQEEEALAAVIALF 83 (90)
T ss_pred CcEEchHhHHHHHHhCCCCCCEE----EEEEECcCHHHHHHHHHHHH
Confidence 34578899988888888888777 78999999988888877653
No 60
>COG1872 Uncharacterized conserved protein [Function unknown]
Probab=26.73 E-value=60 Score=26.95 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=30.4
Q ss_pred EEEEcCCchhHHHHhhhhhCCCCCcCceEEcCccCCCcc
Q psy14668 162 EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTY 200 (266)
Q Consensus 162 EI~IQGD~rdkV~elL~eKypGIpek~IevldkkKKkK~ 200 (266)
+.=++|-.-+.+.++|.+.| ++|...|++........|
T Consensus 44 apP~~GKAN~~li~~Lak~~-~v~kS~V~ivsGetsR~K 81 (102)
T COG1872 44 APPVDGKANEELIKFLAKTF-GVPKSSVEIVSGETSRLK 81 (102)
T ss_pred cCCCCcchhHHHHHHHHHHh-CCCcccEEEEecCcccce
Confidence 45578999999999999999 999999998655444433
No 61
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=26.34 E-value=55 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=21.1
Q ss_pred CCchhHHHHhhhhhCCCCCcCceEEcCccC
Q psy14668 167 GDVKDDLFDVIPEKWPEIDEDFIEDLGDLK 196 (266)
Q Consensus 167 GD~rdkV~elL~eKypGIpek~IevldkkK 196 (266)
.+.-..|.++|.+.|||.....++...+..
T Consensus 6 ~~lP~~v~~~i~~~yp~~~i~~v~~~~~~~ 35 (61)
T PF11396_consen 6 SELPAAVKNAIKKNYPGAKIKEVEKETDPG 35 (61)
T ss_dssp GGS-HHHHHHHHHHSTTSEEEEEEEEEETT
T ss_pred HHCCHHHHHHHHHHCCCCeEEEEEEEEcCC
Confidence 355677899999999887776666655444
No 62
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=26.19 E-value=1.9e+02 Score=25.81 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=42.4
Q ss_pred EeEeeeEeccCCCCCCHHHHHHHHh-ccccceeeecCCcEEEEcCCchh---HHHHhhhhhCCCCCcCc
Q psy14668 124 VQKTSYTEAQFPLSSDPIVASKFFG-TRFACGSSVTGDDEIVIQGDVKD---DLFDVIPEKWPEIDEDF 188 (266)
Q Consensus 124 I~kVT~IsGLE~FgIDLKeLAK~LK-KKFACGgSVkg~~EI~IQGD~rd---kV~elL~eKypGIpek~ 188 (266)
=+.+++..|++.- ..|++.|.+| .|+=+-+++.| ++|-|.|--+| .++.+|.+.--++|-.+
T Consensus 91 rq~i~lk~GI~~e--~AKkIvK~IKd~klKVqa~IQG-d~vRVtgKkrDDLQ~viallk~~d~~~pLQF 156 (161)
T PRK05412 91 KQEVKLKQGIDQE--LAKKIVKLIKDSKLKVQAQIQG-DQVRVTGKKRDDLQAVIALLRKADLGQPLQF 156 (161)
T ss_pred EEEEehhhccCHH--HHHHHHHHHHhcCCceeEEecC-cEEEEecCCHhHHHHHHHHHHhccCCCCcee
Confidence 3458888998862 5677777776 35668888865 89999997777 55556665422566544
No 63
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=25.55 E-value=54 Score=22.67 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=27.0
Q ss_pred hhHHHHhhhhhCCCCCcCceEE-cCccCCCcccccceecC
Q psy14668 170 KDDLFDVIPEKWPEIDEDFIED-LGDLKSPTYNIAYYVLP 208 (266)
Q Consensus 170 rdkV~elL~eKypGIpek~Iev-ldkkKKkK~n~~~~~lp 208 (266)
.+.|.+.|.+.+ |+|++.+.+ ..+-.+-.|.+++.++|
T Consensus 21 ~~~it~~l~~~~-~~p~~~v~V~i~e~~~~~w~~gG~~~~ 59 (62)
T PRK00745 21 VEEITRVTVETL-GCPPESVDIIITDVKRENWATGGKLWS 59 (62)
T ss_pred HHHHHHHHHHHc-CCChhHEEEEEEEcChHHeeECCEEcC
Confidence 345566666777 888888776 66666677888887776
No 64
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.99 E-value=27 Score=36.05 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=52.5
Q ss_pred cCCCcccccCCCCCCCCccchhhhhhcCCccccccccccccc----ccceeeeccccCCCc-eeEeEeeeEeccCCCCCC
Q psy14668 65 IRPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLK----NKKLASLMGTTPPSK-KTVQKTSYTEAQFPLSSD 139 (266)
Q Consensus 65 ~~pd~~~~ss~~~~~k~v~~~~e~~~~gs~~~~d~e~etL~k----nKQ~LKv~l~kknRk-KtI~kVT~IsGLE~FgID 139 (266)
+-=||.|..=||..| ..|+++|.+=|...|.+.+.|+|. ..++..| .|.+.. +| +|.|+=|.. .--
T Consensus 457 lIFDEVD~GIsG~~A---~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~H~~V--~K~~~~~~T---~s~V~~L~~-eeR 527 (557)
T COG0497 457 LIFDEVDTGISGRVA---QAVGKKLRRLSEHHQVLCVTHLPQVAAMADTHFLV--EKESEDGRT---ESRVRPLDK-EER 527 (557)
T ss_pred EEEecccCCCChHHH---HHHHHHHHHHhcCceEEEEecHHHHHhhhcceEEE--EEecCCCce---EEeeeeCCH-hHH
Confidence 445899988888877 567778877788899999999997 3334333 444444 77 455565555 356
Q ss_pred HHHHHHHHh
Q psy14668 140 PIVASKFFG 148 (266)
Q Consensus 140 LKeLAK~LK 148 (266)
.+++|++|+
T Consensus 528 veEiARMl~ 536 (557)
T COG0497 528 VEEIARMLG 536 (557)
T ss_pred HHHHHHHhc
Confidence 788888874
No 65
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=23.20 E-value=1e+02 Score=23.77 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=25.8
Q ss_pred CCchhHHHHhhhhhCCCCCcCceEEcCccCCCcc
Q psy14668 167 GDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTY 200 (266)
Q Consensus 167 GD~rdkV~elL~eKypGIpek~IevldkkKKkK~ 200 (266)
|-.-+.+.++|.+.+ ++|...|++....+.+.|
T Consensus 39 GkAN~ali~~La~~l-~v~ks~i~i~~G~~Sr~K 71 (77)
T PF02594_consen 39 GKANKALIRFLAKAL-GVPKSDIEIVSGHTSRNK 71 (77)
T ss_dssp CCHHHHHHHHHHHHC-T--TTCEEECC-CCCSEE
T ss_pred ChhHHHHHHHHHHHh-CCCcccEEEEecCCCCce
Confidence 888899999999999 999999999776665544
No 66
>PRK10738 hypothetical protein; Provisional
Probab=22.02 E-value=44 Score=27.61 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=12.9
Q ss_pred ccCCCcccccCCCCCC
Q psy14668 64 PIRPDFFDRSSHGGCA 79 (266)
Q Consensus 64 ~~~pd~~~~ss~~~~~ 79 (266)
..+|-|++-+|-|||.
T Consensus 33 g~~P~EllL~aLg~Ct 48 (134)
T PRK10738 33 APSPMEMVLMAAGGCS 48 (134)
T ss_pred CCCHHHHHHHHHcCch
Confidence 4678888888888887
No 67
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=21.82 E-value=1.1e+02 Score=22.88 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHhccccceeeecCCcEEEEcCCchhHHHHhhhhh
Q psy14668 136 LSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180 (266)
Q Consensus 136 FgIDLKeLAK~LKKKFACGgSVkg~~EI~IQGD~rdkV~elL~eK 180 (266)
..+|.|.+-..++=...+|..+ +|.++|+-.++..+.|.+-
T Consensus 40 ~~vdakSil~l~~L~~~~G~~i----~i~~~G~de~~a~~~i~~~ 80 (84)
T PF00381_consen 40 KTVDAKSILGLMSLGAKKGDEI----EIEAEGEDEEEALEAIAEF 80 (84)
T ss_dssp EEEETTSHHHHHHHTBSTTEEE----EEEEESTTHHHHHHHHHHH
T ss_pred eeEecCCHHHHhhhhcCCCCEE----EEEEECcCHHHHHHHHHHH
Confidence 4466777776666555555555 7888999998888887653
No 68
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=21.05 E-value=4.1e+02 Score=21.23 Aligned_cols=53 Identities=15% Similarity=-0.001 Sum_probs=41.1
Q ss_pred eEeccCCCCCCHHHHHHHHhccccceeeec--CC--cEEEEcCCchhHHHHhhhhhCCC
Q psy14668 129 YTEAQFPLSSDPIVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPE 183 (266)
Q Consensus 129 ~IsGLE~FgIDLKeLAK~LKKKFACGgSVk--g~--~EI~IQGD~rdkV~elL~eKypG 183 (266)
+|+|-.+ |+......+..+.+++.-|-|+ ++ =||+.||+-.+ +.+++..-..|
T Consensus 9 ~V~GrVQ-GVGFR~~~~~~A~~lgl~G~V~N~~DGsVeiva~G~~~~-v~~~~~~l~~g 65 (92)
T COG1254 9 RVYGRVQ-GVGFRYFTRSEALRLGLTGWVKNLDDGSVEIVAEGPDEA-VEKFIEWLRKG 65 (92)
T ss_pred EEEEEec-cccHHHHHHHHHHHCCCEEEEEECCCCeEEEEEEcCHHH-HHHHHHHHHhC
Confidence 4677766 7888999999999999999998 23 49999999887 77666543334
No 69
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=20.88 E-value=70 Score=24.18 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=29.9
Q ss_pred ccccceeeec-CCcEEEE--c---CCchhHHHHhhhhhCCCCCcCceEEcCccCCCcccccceecCce
Q psy14668 149 TRFACGSSVT-GDDEIVI--Q---GDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVLPTH 210 (266)
Q Consensus 149 KKFACGgSVk-g~~EI~I--Q---GD~rdkV~elL~eKypGIpek~IevldkkKKkK~n~~~~~lp~~ 210 (266)
.-...+|++. .++++.+ + ...-.++..+|.+.| +++.+ |.+....+-+|.+.|.-.+++-
T Consensus 10 Alir~~G~l~~~~~~~~l~~~ten~~vARri~~llk~~f-~i~~e-i~v~~~~~l~k~~~Y~i~i~~~ 75 (86)
T PF10298_consen 10 ALIRFSGSLSISNGRISLEISTENAAVARRIYSLLKKLF-DIDPE-ISVRRSRNLKKNNVYTIRIEDS 75 (86)
T ss_dssp HHHHHHEEECTTTTEEEE--EES-HHHHHHHHHHHHHTT---EEE-EEEEE-SSSBEEE---------
T ss_pred HHHHhCCEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHh-CCCeE-EEEecCCCCCCCCccccccccc
Confidence 3334566665 2344444 3 456678889999999 99887 5554444445566665444443
No 70
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=20.17 E-value=1.4e+02 Score=30.02 Aligned_cols=58 Identities=7% Similarity=0.148 Sum_probs=43.2
Q ss_pred eeeEeccCCCCCCHHHHHHHHhccccc-------------------------eeeecC-------CcEEEEcCCchhHHH
Q psy14668 127 TSYTEAQFPLSSDPIVASKFFGTRFAC-------------------------GSSVTG-------DDEIVIQGDVKDDLF 174 (266)
Q Consensus 127 VT~IsGLE~FgIDLKeLAK~LKKKFAC-------------------------GgSVkg-------~~EI~IQGD~rdkV~ 174 (266)
|-+|.|++.+.-|+.++.+.|. .+|. |+++.+ .-.|.+|.....+.+
T Consensus 223 VNii~g~~~~~gd~~eikrlL~-~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~~a~~A~~~ivl~~~~~~~~a 301 (515)
T TIGR01286 223 INIIPGFETYIGNFREIKRILS-LMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMKDAPNAEATVLLQPYTLRKTK 301 (515)
T ss_pred EEEECCCCCCchhHHHHHHHHH-HcCCCeEEccCccccccCCCCCCccccCCCCCHHHHHHhhhCcEEEEEchhhhHHHH
Confidence 6678899988789999988887 4454 333320 146888888888999
Q ss_pred HhhhhhCCCCCc
Q psy14668 175 DVIPEKWPEIDE 186 (266)
Q Consensus 175 elL~eKypGIpe 186 (266)
++|.++| |+|.
T Consensus 302 ~~l~~~~-g~p~ 312 (515)
T TIGR01286 302 EYIEKTW-KQET 312 (515)
T ss_pred HHHHHHh-CCCc
Confidence 9999998 7754
Done!