RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14668
(266 letters)
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein;
NMR {Saccharomyces cerevisiae}
Length = 108
Score = 49.1 bits (117), Expect = 6e-08
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 134 FPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI 189
P D K FAC ++ + I +QGD + + + + + + + I
Sbjct: 45 VPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG-LQKKNI 103
Query: 190 E 190
+
Sbjct: 104 K 104
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_F
Length = 101
Score = 45.3 bits (107), Expect = 9e-07
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 134 FPLSSDPIVASKFFGTRFACGSSVTGDDE----IVIQGDVKDDLFDVIPEKWPEIDEDFI 189
P D K++ +C +++ +DE I + GD ++ + + E+ D I
Sbjct: 38 IPPEFDYEKIMKYWKKWLSCNATIVEEDEGKKVIKLNGDHRNQIQQFLSEEG-IAAVDNI 96
Query: 190 E 190
Sbjct: 97 T 97
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP:
d.64.1.1
Length = 126
Score = 45.7 bits (108), Expect = 1e-06
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 134 FPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEK 180
D K F +FAC +V + I +QGD + ++ + E
Sbjct: 63 IADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI 113
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 45.6 bits (108), Expect = 1e-06
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 144 SKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180
+ + CG +V D I IQGD +D L ++ K
Sbjct: 64 AAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 40/305 (13%), Positives = 81/305 (26%), Gaps = 95/305 (31%)
Query: 11 HNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPIRPDFF 70
N + H N + S + + + + Y L + + + W + F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAW----NAF 262
Query: 71 DRSSHGGCAKPVGDFREIVL-RGSSVSQDMSVSHLLKNKKLASLMGTTPPSKKTV--QKT 127
+ C + ++ R V+ +S + M TP K++ +
Sbjct: 263 N----LSC-------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 128 SYTEAQFP---LSSDPIVASKFFGTRFACGSS-------VTGDD-EIVIQGDVK------ 170
P L+++P S G + V D +I+ +
Sbjct: 312 DCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 171 -----DDLF----DV-IPEK-----WPEIDEDFIEDL-----------GDLKSPTYNIAY 204
D L IP W ++ + + + K T +I
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-- 428
Query: 205 YVLPTHIIISWVQPNGTLLLTMRSCFTHGFIVLGITEYIVPK--------------YLFT 250
I ++ + H I + Y +PK Y ++
Sbjct: 429 -----PSIYLELKVKLENEYAL-----HRSI---VDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 251 LFFYH 255
+H
Sbjct: 476 HIGHH 480
Score = 31.4 bits (70), Expect = 0.31
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 161 DEIVIQGDVKDD---LFDVIPEKWPEIDEDFIEDLGDLKSPTYN 201
D I++ D LF + K E+ + F+E++ L+ Y
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LR-INYK 92
Score = 29.1 bits (64), Expect = 2.1
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 32/158 (20%)
Query: 85 FREIVLRGSSVSQDMSVSHLLKNKK-LASLMGTTP--PSKKTVQKTSYTEAQFPLSSDPI 141
F ++ + + Q L N K L S + T PS T Y E + L +D
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT---RMYIEQRDRLYNDNQ 124
Query: 142 VASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL---KSP 198
V +K+ +R + ++ ++ L ++ P K ID G L K+
Sbjct: 125 VFAKYNVSRL----------QPYLK--LRQALLELRPAKNVLID-------GVLGSGKT- 164
Query: 199 TYNIAYYVLPTHIIISWVQPNGTLLLTMRSCFTHGFIV 236
+A V ++ + L +++C + ++
Sbjct: 165 --WVALDVCLSYKVQC-KMDFKIFWLNLKNCNSPETVL 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.005
Identities = 45/223 (20%), Positives = 64/223 (28%), Gaps = 100/223 (44%)
Query: 9 NIHNISPCGRHVENPFFN-LRSEV------SMYTKSIYVRSY-ALSYLN----------P 50
N H P G+ VE N ++ V S+Y ++ +R A S L+
Sbjct: 357 NSH--LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 51 YVIHRFLCESDVWPIR-PDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNKK 109
+RFL P+ P F H SHLL
Sbjct: 415 KFSNRFL------PVASP--F----H--------------------------SHLLV--- 433
Query: 110 LASLMGTTPPSKKTVQKTSYTEAQFPLSSD---PIVASKFFGTRFACGSSVTGDDEIVIQ 166
P S + F + D P+ + T G D V+
Sbjct: 434 --------PASDLINKDLVKNNVSFN-AKDIQIPV-----YDTF-------DGSDLRVLS 472
Query: 167 GDVKDDLFDVI---PEKWPEIDE-------DF----IEDLGDL 195
G + + + D I P KW + DF LG L
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Score = 31.2 bits (70), Expect = 0.38
Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 41/130 (31%)
Query: 143 ASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI----EDLGDLKSP 198
A F + G S+ +IV + + EK I E++ E + D K
Sbjct: 1649 ADNHFKDTY--GFSIL---DIV-INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 199 TYNIAYYVLPTHIIISWVQPNGTLLLT-----------------MRSCFTHGFIV----- 236
T I + ++ G L T ++S G I
Sbjct: 1703 TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS---KGLIPADATF 1759
Query: 237 ----LGITEY 242
LG EY
Sbjct: 1760 AGHSLG--EY 1767
Score = 28.5 bits (63), Expect = 3.3
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 172 DL---FDVIPEKWPEIDEDFIEDLGDLKSPTYNIAYYVL--PTHIIISWVQPNGTLL--L 224
DL + W D F + G ++I V+ P ++ I + G +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYG------FSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 225 TMRSCFTHGFIVLGITEYI---VPKYLFTLFFYHQ 256
F TE I + ++ + F +
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Score = 27.7 bits (61), Expect = 4.7
Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 81/281 (28%)
Query: 6 QSSNIHNISPCGRHVENPFFNLRSEVSMYTKSIYVRSYALSYLNPYVIHRFLCESDVWPI 65
+ ++IH ++ ++ ++ +++Y + R +
Sbjct: 97 EGNDIHALAAK--------LLQENDTTLVKTKELIKNY---ITARIMAKRPFDK----KS 141
Query: 66 RPDFFDRSSHGGCAKPVGDFREIVLRGSSVSQDMSVSHLLKNKKLASLMGTTPPSKKTVQ 125
F R+ G A+ V F G Q + + ++L L T +
Sbjct: 142 NSALF-RAVGEGNAQLVAIF------GG---QGNTDDYF---EELRDLYQTYHVLVGDLI 188
Query: 126 KTSYTEAQFPLSSDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEID 185
K S E L + A K F ++ + L + P P D
Sbjct: 189 KFS-AETLSELIRTTLDAEKVFTQGL----------------NILEWLEN--PSNTP--D 227
Query: 186 EDFIEDLGDLKSPTYN--------IAYYVLPTHIIISWVQPNGTLLLTMRSCFTHG---- 233
+D+ L S + +A+YV+ + P G L ++ H
Sbjct: 228 KDY------LLSIPISCPLIGVIQLAHYVVTAK--LLGFTP-GELRSYLKGATGHSQGLV 278
Query: 234 ---FIVLGITE---Y-IVPKYLFTLFFY----HQLFDCSVL 263
I + + V K + LFF ++ + + L
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, lyase; 1.40A
{Burkholderia thailandensis}
Length = 487
Score = 34.6 bits (80), Expect = 0.030
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 145 KFFGTRFACGSSVTGDDEIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN-I 202
+ TR A +I++ G KD L+ +P ++P++ D + L Y +
Sbjct: 6 NYISTRGAGIGERHTFSDILLGGLAKDGGLY--LPSEYPQVSADELARWRTL---PYADL 60
Query: 203 AYYVL 207
A+ +L
Sbjct: 61 AFEIL 65
>4f4f_A Threonine synthase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: PLP; 1.90A
{Brucella melitensis BV}
Length = 468
Score = 32.6 bits (75), Expect = 0.13
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 145 KFFGTRFACGSSVTGD-DEIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN- 201
K+ TR G + + ++ G +D L+ +P+++P+ + I L +Y
Sbjct: 7 KYVSTR---GEAPVLGFSDALLAGLARDGGLY--LPQEYPQFTAEQIRALRGK---SYVE 58
Query: 202 IAYYVL 207
+A VL
Sbjct: 59 VALAVL 64
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A
{Escherichia coli} SCOP: c.79.1.1
Length = 428
Score = 32.2 bits (74), Expect = 0.17
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 162 EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN-IAYYVLP 208
+ V QG K+ LF P PE I+++ L + + +L
Sbjct: 17 QAVTQGLGKNQGLF--FPHDLPEFSLTEIDEMLKL---DFVTRSAKILS 60
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 31.0 bits (71), Expect = 0.34
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 156 SVTGDDEIVIQGDVKDD-----LFDVIPEKWPEID 185
++ +D I++ DV +D F I E+ I
Sbjct: 55 TLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIH 89
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 30.3 bits (69), Expect = 0.55
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 156 SVTGDDEIVIQGDVKDD-----LFDVIPEKWPEID 185
+ + + Q DV+ D F+ I + ID
Sbjct: 80 QLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNID 114
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate,
beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces
cerevisiae} SCOP: c.79.1.1
Length = 514
Score = 29.7 bits (67), Expect = 1.1
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 145 KFFGTRFACGSSVTGDD--EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN 201
+ TR SS E +IQG D LF IP P++D+ + + D ++
Sbjct: 7 VYRSTR---SSSPKTISFEEAIIQGLATDGGLF--IPPTIPQVDQATLFN--DWSKLSFQ 59
Query: 202 -IAYYVLP 208
+A+ ++
Sbjct: 60 DLAFAIMR 67
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 29.1 bits (66), Expect = 1.2
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
+ V+ DV D LF + + W +D
Sbjct: 75 NPAAVLPCDVISDQEIKDLFVELGKVWDGLD 105
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 29.1 bits (66), Expect = 1.3
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
++V++ DV D L + E W +D
Sbjct: 71 GSDLVVKCDVSLDEDIKNLKKFLEENWGSLD 101
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 29.1 bits (66), Expect = 1.3
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
+ V + DV + L++ + + +D
Sbjct: 56 NSPYVYELDVSKEEHFKSLYNSVKKDLGSLD 86
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 29.1 bits (66), Expect = 1.3
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
++ + DV D LF + E + +D
Sbjct: 58 GGALLFRADVTQDEELDALFAGVKEAFGGLD 88
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 29.1 bits (66), Expect = 1.3
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
+IV+Q DV +D +F + + WP+ D
Sbjct: 59 GSDIVLQCDVAEDASIDTMFAELGKVWPKFD 89
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 29.1 bits (66), Expect = 1.4
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
+ DV D +F+ + +KW ++D
Sbjct: 81 GAFVAGHCDVADAASIDAVFETLEKKWGKLD 111
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 29.1 bits (66), Expect = 1.4
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
++ + DV D +F V+ E+W +D
Sbjct: 80 GVKLTVPCDVSDAESVDNMFKVLAEEWGSLD 110
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 29.1 bits (66), Expect = 1.5
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 160 DDEIVIQGDVKDD-----LFDVIPEKWPEID 185
E+V DV DD LF + W +D
Sbjct: 64 GSELVFPCDVADDAQIDALFASLKTHWDSLD 94
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR
genomics, joint center for structural genomics, JCSG;
2.00A {Listeria innocua}
Length = 128
Score = 27.1 bits (60), Expect = 3.6
Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 136 LSSDPIVASKFF-GTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 187
+ +P V + + + G + +K+ +++ I + W + ++
Sbjct: 58 VRRNPHVCVLIGYDSPGSAFLEINGLASLEEDESIKERIWENISKDWFQGEDS 110
>3ec6_A General stress protein 26; alpha-beta structure, structural
genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis}
Length = 139
Score = 26.4 bits (58), Expect = 7.2
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 156 SVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 187
V G I +K+ ++ ++W ED
Sbjct: 79 EVEGLASIEEDSTLKNKFWNNSLKRWLLRPED 110
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 26.8 bits (60), Expect = 8.3
Identities = 4/24 (16%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 48 LNPYVIHRFLCESDVWPIRPDFFD 71
+ +HR + +W + F
Sbjct: 355 VLIPQLHR---DKTIWGDDVEEFR 375
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.435
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,116,722
Number of extensions: 241840
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 29
Length of query: 266
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 174
Effective length of database: 4,133,061
Effective search space: 719152614
Effective search space used: 719152614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)