RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14668
         (266 letters)



>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 134 FPLS-SDPIVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 180
             L  ++    +     +  CG +V  D  I IQGD +D L  ++  K
Sbjct: 26  VDLDDAELTKLAAELKKKCGCGGAVK-DGVIEIQGDKRDLLKSLLEAK 72


>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 134 FPLSSDPIVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI 189
                D     K F  +FAC  +V       + I +QGD + ++   + E      +D +
Sbjct: 63  IADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG-LAKDDQL 121

Query: 190 E 190
           +
Sbjct: 122 K 122


>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 511

 Score = 30.4 bits (68), Expect = 0.21
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 162 EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN-IAYYVLPTHI 211
           E +IQG   D  LF  IP   P++D+  + +  D    ++  +A+ ++  +I
Sbjct: 22  EAIIQGLATDGGLF--IPPTIPQVDQATLFN--DWSKLSFQDLAFAIMRLYI 69


>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
           [TaxId: 562]}
          Length = 428

 Score = 30.2 bits (67), Expect = 0.25
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 162 EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN-IAYYVL 207
           + V QG  K+  LF   P   PE     I+++  L    +   +  +L
Sbjct: 17  QAVTQGLGKNQGLF--FPHDLPEFSLTEIDEMLKL---DFVTRSAKIL 59


>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 128

 Score = 25.6 bits (55), Expect = 3.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 175 DVIPEKWPEIDEDFIE 190
            +    WPE+DE  +E
Sbjct: 112 SLFEAGWPELDEKALE 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,036,415
Number of extensions: 48733
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 5
Length of query: 266
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,254,276
Effective search space: 228278232
Effective search space used: 228278232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)