Query psy14673
Match_columns 912
No_of_seqs 459 out of 1965
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:41:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1985|consensus 100.0 2E-136 5E-141 1151.5 66.0 634 267-902 239-886 (887)
2 KOG1984|consensus 100.0 3E-124 6E-129 1053.7 73.3 632 267-906 359-1007(1007)
3 PTZ00395 Sec24-related protein 100.0 3E-121 7E-126 1071.5 62.1 583 312-908 950-1560(1560)
4 PLN00162 transport protein sec 100.0 3E-116 7E-121 1056.5 59.9 618 245-904 39-761 (761)
5 COG5028 Vesicle coat complex C 100.0 4E-115 8E-120 971.8 57.2 626 267-903 220-861 (861)
6 KOG1986|consensus 100.0 2E-108 5E-113 912.3 53.1 620 234-904 21-744 (745)
7 COG5047 SEC23 Vesicle coat com 100.0 3.2E-97 7E-102 800.7 42.9 621 233-903 20-753 (755)
8 cd01479 Sec24-like Sec24-like: 100.0 1.5E-53 3.4E-58 451.1 25.4 241 312-552 1-243 (244)
9 cd01468 trunk_domain trunk dom 100.0 1.1E-49 2.5E-54 422.3 25.5 234 312-547 1-239 (239)
10 PF04811 Sec23_trunk: Sec23/Se 100.0 1.6E-48 3.4E-53 415.4 19.9 236 312-549 1-243 (243)
11 cd01478 Sec23-like Sec23-like: 100.0 3E-46 6.5E-51 398.1 20.9 224 312-546 1-266 (267)
12 PF08033 Sec23_BS: Sec23/Sec24 99.8 1.1E-20 2.4E-25 170.7 9.9 85 554-638 1-96 (96)
13 PF04815 Sec23_helical: Sec23/ 99.8 3.1E-20 6.8E-25 170.0 11.4 102 650-752 1-103 (103)
14 PRK13685 hypothetical protein; 98.7 3.6E-07 7.9E-12 101.8 18.7 160 314-529 88-275 (326)
15 cd01453 vWA_transcription_fact 98.6 8.5E-07 1.8E-11 90.3 15.8 163 316-547 5-177 (183)
16 cd01465 vWA_subgroup VWA subgr 98.6 1.7E-06 3.6E-11 86.8 15.8 157 316-530 2-163 (170)
17 cd01467 vWA_BatA_type VWA BatA 98.5 2E-06 4.2E-11 87.3 15.9 156 315-529 3-176 (180)
18 cd01451 vWA_Magnesium_chelatas 98.5 3.3E-06 7.2E-11 85.6 17.3 159 316-532 2-169 (178)
19 cd01466 vWA_C3HC4_type VWA C3H 98.5 1.5E-06 3.2E-11 86.2 13.9 147 317-527 3-154 (155)
20 cd01463 vWA_VGCC_like VWA Volt 98.5 3.2E-06 6.9E-11 86.7 16.6 166 311-529 10-188 (190)
21 cd01456 vWA_ywmD_type VWA ywmD 98.5 2.1E-06 4.5E-11 89.3 15.3 173 311-524 17-196 (206)
22 TIGR00868 hCaCC calcium-activa 98.5 1E-05 2.2E-10 98.5 22.9 167 314-548 304-476 (863)
23 cd01452 VWA_26S_proteasome_sub 98.3 1.6E-05 3.5E-10 80.4 15.0 143 316-520 5-161 (187)
24 cd01472 vWA_collagen von Wille 98.3 2.9E-05 6.2E-10 77.6 16.0 151 317-529 3-163 (164)
25 TIGR03788 marine_srt_targ mari 98.2 0.00065 1.4E-08 82.2 30.3 285 311-691 268-557 (596)
26 cd01474 vWA_ATR ATR (Anthrax T 98.2 2.7E-05 5.9E-10 79.5 15.6 156 314-531 4-168 (185)
27 cd01470 vWA_complement_factors 98.2 3.3E-05 7.2E-10 79.8 15.5 168 317-531 3-191 (198)
28 PF13519 VWA_2: von Willebrand 98.2 1.8E-05 3.9E-10 79.0 12.4 150 317-527 2-158 (172)
29 TIGR03436 acidobact_VWFA VWFA- 98.1 0.00012 2.7E-09 80.6 19.2 159 312-527 51-238 (296)
30 cd01461 vWA_interalpha_trypsin 98.1 5.9E-05 1.3E-09 75.6 15.3 157 314-529 2-161 (171)
31 cd01480 vWA_collagen_alpha_1-V 98.0 0.00011 2.4E-09 75.0 14.5 159 315-531 3-173 (186)
32 PF13768 VWA_3: von Willebrand 98.0 0.0001 2.2E-09 72.8 13.7 150 317-526 3-155 (155)
33 KOG3598|consensus 98.0 6.9E-06 1.5E-10 99.4 5.2 7 2-8 1951-1957(2220)
34 cd01450 vWFA_subfamily_ECM Von 97.9 0.00019 4.1E-09 70.8 14.3 146 317-521 3-156 (161)
35 cd01469 vWA_integrins_alpha_su 97.9 0.00043 9.3E-09 70.1 16.5 156 317-531 3-172 (177)
36 cd01475 vWA_Matrilin VWA_Matri 97.9 0.00028 6E-09 74.4 15.4 156 314-531 2-170 (224)
37 cd01471 vWA_micronemal_protein 97.9 0.00026 5.5E-09 72.3 14.4 149 317-519 3-160 (186)
38 cd01477 vWA_F09G8-8_type VWA F 97.9 0.0003 6.6E-09 72.1 14.7 152 314-522 19-187 (193)
39 PTZ00441 sporozoite surface pr 97.8 0.00065 1.4E-08 78.8 17.7 164 314-531 42-217 (576)
40 KOG3598|consensus 97.8 2.5E-05 5.4E-10 94.8 5.5 6 222-227 2199-2204(2220)
41 cd01482 vWA_collagen_alphaI-XI 97.8 0.00073 1.6E-08 67.5 15.3 150 317-528 3-162 (164)
42 TIGR02031 BchD-ChlD magnesium 97.8 0.00084 1.8E-08 80.6 18.2 174 312-531 405-584 (589)
43 PF00626 Gelsolin: Gelsolin re 97.7 5.2E-06 1.1E-10 71.4 -1.0 35 777-811 4-38 (76)
44 cd00198 vWFA Von Willebrand fa 97.7 0.0011 2.5E-08 64.5 14.9 148 316-520 2-155 (161)
45 cd01481 vWA_collagen_alpha3-VI 97.7 0.0017 3.6E-08 65.0 16.1 151 317-530 3-165 (165)
46 cd01473 vWA_CTRP CTRP for CS 97.6 0.0024 5.2E-08 65.6 17.4 150 317-519 3-161 (192)
47 smart00327 VWA von Willebrand 97.6 0.0021 4.5E-08 64.3 16.1 154 315-526 2-164 (177)
48 TIGR02442 Cob-chelat-sub cobal 97.6 0.00073 1.6E-08 82.0 14.3 161 312-527 463-632 (633)
49 PF00092 VWA: von Willebrand f 97.5 0.0012 2.7E-08 66.2 12.5 155 317-531 2-169 (178)
50 PRK13406 bchD magnesium chelat 97.5 0.0037 8E-08 74.6 17.9 167 312-532 399-572 (584)
51 cd01476 VWA_integrin_invertebr 97.4 0.0062 1.3E-07 60.5 16.9 104 317-455 3-117 (163)
52 COG1240 ChlD Mg-chelatase subu 97.4 0.0028 6E-08 66.1 13.0 166 313-532 77-249 (261)
53 cd01458 vWA_ku Ku70/Ku80 N-ter 97.3 0.0083 1.8E-07 62.9 16.4 151 316-506 3-173 (218)
54 cd01464 vWA_subfamily VWA subf 97.3 0.001 2.2E-08 67.3 8.6 138 317-518 6-159 (176)
55 PF04056 Ssl1: Ssl1-like; Int 97.2 0.0071 1.5E-07 61.4 13.4 165 320-550 1-174 (193)
56 cd01454 vWA_norD_type norD typ 96.9 0.02 4.4E-07 57.6 14.5 146 316-507 2-154 (174)
57 smart00262 GEL Gelsolin homolo 96.9 0.0055 1.2E-07 54.5 9.1 34 781-814 16-49 (90)
58 KOG2884|consensus 96.8 0.027 5.8E-07 56.6 13.4 148 316-522 5-163 (259)
59 COG4245 TerY Uncharacterized p 96.5 0.011 2.5E-07 58.2 8.6 101 314-454 4-120 (207)
60 cd01462 VWA_YIEM_type VWA YIEM 96.1 0.14 3.1E-06 50.1 14.0 129 317-506 3-135 (152)
61 COG5148 RPN10 26S proteasome r 95.2 0.47 1E-05 46.8 13.2 133 314-504 3-145 (243)
62 TIGR00578 ku70 ATP-dependent D 95.1 0.35 7.6E-06 58.3 15.1 156 315-504 11-182 (584)
63 KOG0443|consensus 95.1 0.048 1E-06 64.8 7.2 57 750-815 616-672 (827)
64 PF03850 Tfb4: Transcription f 94.6 1.6 3.6E-05 47.2 17.0 185 315-530 2-208 (276)
65 cd01460 vWA_midasin VWA_Midasi 94.5 0.77 1.7E-05 49.4 14.1 148 312-520 58-221 (266)
66 cd01457 vWA_ORF176_type VWA OR 94.1 0.48 1E-05 48.8 11.4 143 316-519 4-165 (199)
67 TIGR00627 tfb4 transcription f 93.7 2.3 5.1E-05 46.0 15.9 82 423-528 117-208 (279)
68 KOG4407|consensus 92.5 0.23 5E-06 61.5 6.7 14 554-567 927-940 (1973)
69 cd01455 vWA_F11C1-5a_type Von 92.2 7.3 0.00016 39.7 16.1 96 403-529 74-174 (191)
70 KOG2807|consensus 91.2 3.7 8.1E-05 44.2 13.1 166 314-548 60-235 (378)
71 PF03731 Ku_N: Ku70/Ku80 N-ter 90.5 0.99 2.1E-05 47.4 8.4 154 316-503 1-172 (224)
72 KOG4274|consensus 90.1 1.3 2.7E-05 50.9 8.9 13 669-681 705-717 (742)
73 KOG0444|consensus 88.0 0.78 1.7E-05 53.5 5.5 29 781-809 639-667 (1255)
74 PRK10997 yieM hypothetical pro 87.1 10 0.00023 44.3 14.1 149 315-529 324-475 (487)
75 KOG2353|consensus 86.9 17 0.00037 46.6 16.9 125 286-440 195-322 (1104)
76 PF06707 DUF1194: Protein of u 85.3 42 0.00091 34.6 15.8 97 424-552 94-201 (205)
77 KOG0443|consensus 83.9 2.9 6.3E-05 50.4 7.6 32 783-814 277-309 (827)
78 KOG3768|consensus 83.2 12 0.00026 43.6 11.7 48 507-563 191-238 (888)
79 KOG2487|consensus 83.2 20 0.00043 37.9 12.4 43 484-529 185-227 (314)
80 PF11265 Med25_VWA: Mediator c 82.4 66 0.0014 33.7 16.0 101 405-526 91-204 (226)
81 KOG0444|consensus 79.7 3.5 7.6E-05 48.4 6.2 54 750-812 730-788 (1255)
82 COG4867 Uncharacterized protei 77.6 37 0.00081 38.1 12.8 159 314-528 463-634 (652)
83 KOG1883|consensus 76.1 1.3 2.8E-05 54.7 1.5 24 210-233 1441-1464(1517)
84 KOG1151|consensus 74.0 4.5 9.9E-05 45.6 4.9 8 432-439 350-357 (775)
85 PF00362 Integrin_beta: Integr 73.3 1.9E+02 0.004 33.7 20.1 266 314-603 102-393 (426)
86 COG2425 Uncharacterized protei 72.9 11 0.00023 43.5 7.6 140 314-516 273-418 (437)
87 smart00187 INB Integrin beta s 65.6 2.6E+02 0.0056 32.3 25.7 269 314-603 99-390 (423)
88 KOG4274|consensus 61.4 12 0.00027 43.3 5.1 6 556-561 632-637 (742)
89 PF09967 DUF2201: VWA-like dom 60.7 15 0.00032 34.9 4.9 95 318-455 2-96 (126)
90 PF02905 EBV-NA1: Epstein Barr 55.4 35 0.00076 31.7 6.0 33 333-365 112-145 (146)
91 PF04810 zf-Sec23_Sec24: Sec23 52.7 3.7 8E-05 30.5 -0.5 18 267-284 23-40 (40)
92 COG5242 TFB4 RNA polymerase II 50.9 2.7E+02 0.0059 28.9 12.0 182 313-529 19-214 (296)
93 KOG4407|consensus 46.2 18 0.00038 46.0 3.5 18 742-759 1307-1324(1973)
94 KOG4368|consensus 45.3 1.6E+02 0.0036 34.6 10.6 9 518-526 714-722 (757)
95 KOG0445|consensus 40.7 31 0.00066 41.1 4.1 40 783-822 363-409 (919)
96 PF09770 PAT1: Topoisomerase I 39.7 9.7 0.00021 48.2 0.0 9 716-724 692-700 (808)
97 KOG3648|consensus 38.1 26 0.00057 41.1 3.1 16 647-662 586-601 (1179)
98 PF09770 PAT1: Topoisomerase I 37.2 11 0.00024 47.6 0.0 7 799-805 741-747 (808)
99 KOG4592|consensus 33.9 1.4E+02 0.003 35.5 7.9 12 613-624 537-548 (728)
100 KOG0608|consensus 33.6 9.8E+02 0.021 29.3 15.2 12 492-503 686-697 (1034)
101 PF05762 VWA_CoxE: VWA domain 27.1 85 0.0018 32.9 4.6 32 421-452 126-160 (222)
102 KOG3648|consensus 25.5 38 0.00082 39.9 1.7 18 482-499 562-579 (1179)
103 COG5002 VicK Signal transducti 24.6 3.4E+02 0.0073 30.5 8.4 91 331-447 342-432 (459)
104 PF10138 vWA-TerF-like: vWA fo 22.7 7.4E+02 0.016 25.6 10.1 144 317-519 4-155 (200)
105 KOG4140|consensus 20.6 40 0.00087 38.5 0.6 75 139-224 468-556 (659)
106 COG4548 NorD Nitric oxide redu 20.2 5.1E+02 0.011 30.7 9.1 81 424-525 532-615 (637)
No 1
>KOG1985|consensus
Probab=100.00 E-value=2.4e-136 Score=1151.52 Aligned_cols=634 Identities=49% Similarity=0.830 Sum_probs=605.7
Q ss_pred CcCccCccc---------ccCCCCCCCCCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEccHhHHhhchHHHHH
Q psy14673 267 NLPEIHEQF---------LYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVC 337 (912)
Q Consensus 267 ~~~~~p~~~---------~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~ 337 (912)
+.|.|..|+ .++++++.|+|...||||++++|||+||.||+.| +|+|++||||||||.+|+++|+|+.+|
T Consensus 239 r~WrCNlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR-~P~Pavy~FliDVS~~a~ksG~L~~~~ 317 (887)
T KOG1985|consen 239 RRWRCNLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR-PPQPAVYVFLIDVSISAIKSGYLETVA 317 (887)
T ss_pred ceeeechhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC-CCCCceEEEEEEeehHhhhhhHHHHHH
Confidence 567777776 3556788899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhHhHHHHHHHHHhCCccc
Q psy14673 338 EVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKF 417 (912)
Q Consensus 338 ~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~ 417 (912)
++|+..||.||+++|++|||||||++||||++..+..+|+|++++|+||+|+|.|++|||+++|||+.|+++|+.|+.+|
T Consensus 318 ~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F 397 (887)
T KOG1985|consen 318 RSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMF 397 (887)
T ss_pred HHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCCCCCCchHHHHHHHHHHHhhCCc
Q psy14673 418 KDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYI 496 (912)
Q Consensus 418 ~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~-~~~~~~~~~~~fY~~La~~~~~~~i 496 (912)
.+++.+++|+|+||++|.++|+.+||||++|.+++||.|.|+|+.||+++.++. ++..++.++++|||+||.+|.+.+|
T Consensus 398 ~~~~~t~~alGpALkaaf~li~~~GGri~vf~s~lPnlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI 477 (887)
T KOG1985|consen 398 QDTRSTGSALGPALKAAFNLIGSTGGRISVFQSTLPNLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQI 477 (887)
T ss_pred hhccCcccccCHHHHHHHHHHhhcCCeEEEEeccCCCCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCce
Confidence 999999999999999999999999999999999999999999999998887655 4567999999999999999999999
Q ss_pred EEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEEEeece
Q psy14673 497 AVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNF 576 (912)
Q Consensus 497 svdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~ 576 (912)
+||+|+++.+|.|||+|+.|+++|||.+|||++|+.+++.+..+|.+||.|+|+|++||||+||||||+|++++++||||
T Consensus 478 ~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~GnF 557 (887)
T KOG1985|consen 478 CVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGNF 557 (887)
T ss_pred EEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeeccccccccceeccc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred eccCCCceeeccCCCCCeEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHHHH
Q psy14673 577 FVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGL 656 (912)
Q Consensus 577 ~~~~t~~~~l~~i~~~~si~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~l 656 (912)
+.|++|++.++++.+|.+++|++++++.+.. ...+||.|++||...|||||||||+++++++++.+||+++|++||+.+
T Consensus 558 F~RStDLla~~~v~~D~sy~~qisiEesl~~-~~~~fQvAlLyT~~~GERRIRV~T~~lpt~~sl~evY~saD~~AI~~l 636 (887)
T KOG1985|consen 558 FVRSTDLLALPNVNPDQSYAFQISIEESLTT-GFCVFQVALLYTLSKGERRIRVHTLCLPTVSSLNEVYASADQEAIASL 636 (887)
T ss_pred ccCcHHHhcccCCCCCccceEEEEeehhcCC-ceeEEEeeeeecccCCceeEEEEEeeccccccHHHHHhhcCHHHHHHH
Confidence 9999999999999999999999999999864 567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCccccCcccChHHHHHHHHhcCccccCCCCCChhHHH
Q psy14673 657 LAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHL--TGSLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRL 734 (912)
Q Consensus 657 lak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~--~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~ 734 (912)
|+++|++++++.++.|||+.|.+.++|++.+|++.....+ ...|.+|.+|++||+||++|+|+++||.+..++.|+|+
T Consensus 637 la~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R~ 716 (887)
T KOG1985|consen 637 LAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNGQGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYRA 716 (887)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHHH
Confidence 9999999999999999999999999999999999765432 22499999999999999999999999999899999999
Q ss_pred HHHHHHcCCChhhhHhhhcceeeecccCCCCCCccccCCcccCCccccccccccccCeEEEEeCCceEEEEecCCCChhH
Q psy14673 735 FAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814 (912)
Q Consensus 735 ~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~~~ 814 (912)
++++.++++++..++++|||+||++|+++.+++....++.+++|+.++|+++.|+..|+||||+|..++||||+++++++
T Consensus 717 ~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~l 796 (887)
T KOG1985|consen 717 YAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSL 796 (887)
T ss_pred HHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccc
Confidence 99999999999999999999999999999988877666778899999999999999999999999999999999999999
Q ss_pred HhhccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCCc--HHHHHHHhcccCCCCCCCHHH
Q psy14673 815 CSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPD--RMEFYDKLIEDKNAGGMAYYE 892 (912)
Q Consensus 815 ~~~lfg~~~~~~~~~~~~~lp~~d~~~~~~~~~~i~~l~~~r~~~~p~~iv~~~~~~--~~~f~~~lveD~~~~~~Sy~~ 892 (912)
+.++||++.+.+++.++.++|++|++.++++++||++||++|.++..++|||+++.+ .++|+..||||++.+..||.|
T Consensus 797 l~~vfg~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~e 876 (887)
T KOG1985|consen 797 LFDVFGVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYYE 876 (887)
T ss_pred cccccCcchHhhcccccccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999966544 789999999999999999999
Q ss_pred HHHHHHHHHH
Q psy14673 893 FLLRIRDYQA 902 (912)
Q Consensus 893 fl~~l~~~i~ 902 (912)
||.|||.+|.
T Consensus 877 fLq~lk~qv~ 886 (887)
T KOG1985|consen 877 FLQHLKAQVS 886 (887)
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 2
>KOG1984|consensus
Probab=100.00 E-value=2.8e-124 Score=1053.75 Aligned_cols=632 Identities=31% Similarity=0.526 Sum_probs=596.1
Q ss_pred CcCccCcccccC--------C-C-CCCCCCCCCccccccccEEEEecccccCCC-CCCCcEEEEEEEccHhHHhhchHHH
Q psy14673 267 NLPEIHEQFLYD--------R-N-TEMFGDPYRRPEIQSATVEYLATADYTVRD-PPQPAMYLFLLDVSQIAAQSGYLYT 335 (912)
Q Consensus 267 ~~~~~p~~~~~~--------~-~-~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~-~~~pp~~vFvID~s~~a~~~g~l~~ 335 (912)
+.|.|++|-..| + . .++|.|.++||||+.|||||+|+++|+.+. ++.||+|||+||||++|+++|.+.+
T Consensus 359 r~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL~~Gt~dfvatk~Y~~~~k~p~ppafvFmIDVSy~Ai~~G~~~a 438 (1007)
T KOG1984|consen 359 RKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPELCLGTVDFVATKDYCRKTKPPKPPAFVFMIDVSYNAISNGAVKA 438 (1007)
T ss_pred ceEEecCCCccccCChhhcccCCCcccccccccCchhcccccceeeehhhhhcCCCCCCceEEEEEEeehhhhhcchHHH
Confidence 668888887433 1 1 356779999999999999999999999874 8999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhHhHHHHHHHHHhCC
Q psy14673 336 VCEVLLNQLKSMP-GDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLP 414 (912)
Q Consensus 336 ~~~si~~~L~~lp-~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~ 414 (912)
+|++|++.|+.++ ++++++|||||||++|||||++..+.+++|+||+|++|+|+|+-++++|+..||+..|+.+|++|+
T Consensus 439 ~ce~ik~~l~~lp~~~p~~~Vgivtfd~tvhFfnl~s~L~qp~mliVsdv~dvfvPf~~g~~V~~~es~~~i~~lLd~Ip 518 (1007)
T KOG1984|consen 439 ACEAIKSVLEDLPREEPNIRVGIVTFDKTVHFFNLSSNLAQPQMLIVSDVDDVFVPFLDGLFVNPNESRKVIELLLDSIP 518 (1007)
T ss_pred HHHHHHHHHhhcCccCCceEEEEEEecceeEeeccCccccCceEEEeecccccccccccCeeccchHHHHHHHHHHHHhh
Confidence 9999999999998 678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHHHHhhcCC-CCEEEEEecCCCCCCCC-cccCCCCCCCCCC-CCCCCCCchHHHHHHHHHHH
Q psy14673 415 GKFKDSLDSGSALGPALQAAFKLLQPT-GGRITIFQTCLPNRGPG-ALQSRENPNQRSN-DDPPHMNPATDFYKKIALEC 491 (912)
Q Consensus 415 ~~~~~~~~~~~~~G~AL~~A~~ll~~~-GGrI~~f~~g~pt~GpG-~l~~~~~~~~~~~-~~~~~~~~~~~fY~~La~~~ 491 (912)
.+|.+.+.+++|+|+||++|..+|+.. |||+++|++.+||.|.| +++.|+|.....+ ||++++.++++.|++||++|
T Consensus 519 ~mf~~sk~pes~~g~alqaa~lalk~~~gGKl~vF~s~Lpt~g~g~kl~~r~D~~l~~t~kek~l~~pq~~~y~~LA~e~ 598 (1007)
T KOG1984|consen 519 TMFQDSKIPESVFGSALQAAKLALKAADGGKLFVFHSVLPTAGAGGKLSNRDDRRLIGTDKEKNLLQPQDKTYTTLAKEF 598 (1007)
T ss_pred hhhccCCCCchhHHHHHHHHHHHHhccCCceEEEEecccccccCcccccccchhhhhcccchhhccCcchhHHHHHHHHH
Confidence 999999999999999999999999987 99999999999999977 8888887766544 77889999999999999999
Q ss_pred hhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEE
Q psy14673 492 TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHT 571 (912)
Q Consensus 492 ~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~~~g~~a~l~vr~S~gl~i~~ 571 (912)
++.|||||||+++..|+|+|+++.+++.|||.+|+|..|.. ..|..+|.+||.+.++++.||+|+||||||.||++.+
T Consensus 599 v~~g~svDlF~t~~ayvDvAtlg~v~~~TgG~vy~Y~~F~a--~~D~~rl~nDL~~~vtk~~gf~a~mrvRtStGirv~~ 676 (1007)
T KOG1984|consen 599 VESGCSVDLFLTPNAYVDVATLGVVPALTGGQVYKYYPFQA--LTDGPRLLNDLVRNVTKKQGFDAVMRVRTSTGIRVQD 676 (1007)
T ss_pred HHhCceEEEEEcccceeeeeeecccccccCceeEEecchhh--cccHHHHHHHHHHhcccceeeeeEEEEeecCceeeee
Confidence 99999999999999999999999999999999999999996 4688999999999999999999999999999999999
Q ss_pred EeeceeccCCCceeeccCCCCCeEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHH
Q psy14673 572 FHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQA 651 (912)
Q Consensus 572 ~~G~~~~~~t~~~~l~~i~~~~si~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~ 651 (912)
|+||+..+++.+++|+.+|+|++++++|++|++|.++..++||+|++||+.+|+||+||+|+++++|+.+.++|+++|.|
T Consensus 677 f~Gnf~~~~~tDiela~lD~dkt~~v~fkhDdkLq~~s~~~fQ~AlLYTti~G~RR~Rv~Nlsl~~ts~l~~lyr~~~~d 756 (1007)
T KOG1984|consen 677 FYGNFLMRNPTDIELAALDCDKTLTVEFKHDDKLQDGSDVHFQTALLYTTIDGQRRLRVLNLSLAVTSQLSELYRSADTD 756 (1007)
T ss_pred eechhhhcCCCCccccccccCceeEEEEeccccccCCcceeEEEEEEEeccCCceeEEEEecchhhhhhHHHHHHhcCcc
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccChHHHHHHHHhcCccccCCCCCCh
Q psy14673 652 CIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKLLPLYVLALLKHPAFRIGQSTRL 730 (912)
Q Consensus 652 a~~~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~ 730 (912)
+++++|+|.|+..+..+.++++|+.|++.|+++|+.||+.|++..++ +|+|||+||+||+||++|+||.+|+. ..++.
T Consensus 757 ~l~a~maK~a~~~i~~~~lk~vre~l~~~~~~iL~~YRk~cas~~ssgQLILPeslKLlPly~la~lKs~~l~~-~~~~~ 835 (1007)
T KOG1984|consen 757 PLIAIMAKQAAKAILDKPLKEVREQLVSQCAQILASYRKNCASPASSGQLILPESLKLLPLYMLALLKSSALRP-QEIRT 835 (1007)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccEechhhhHHHHHHHHHHHHhhcccc-ccccc
Confidence 99999999999999999999999999999999999999999986655 59999999999999999999999998 48999
Q ss_pred hHHHHHHHHHcCCChhhhHhhhcceeeecccCCCCCCccccCCcccCCccccccccccccCeEEEEeCCceEEEEecCCC
Q psy14673 731 DDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGT 810 (912)
Q Consensus 731 Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v 810 (912)
|+|+|.+.++.++++.+++.++||+|+++|+++.+... +..+|..+|+|.+.|+.+||||||+|..+|||||+++
T Consensus 836 DdRi~~~~~v~sl~v~~~~~~~YPrl~p~hdl~i~dtl-----~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv 910 (1007)
T KOG1984|consen 836 DDRIYQLQLVTSLSVEQLMPFFYPRLLPFHDLDIEDTL-----EFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESV 910 (1007)
T ss_pred chhHHHHHHhhcccHHhhhhhhccceeeeecccccccc-----ccccccceecchhhccCCceEEEecCcEEEEEecCCC
Confidence 99999999999999999999999999999999876422 2356778999999999999999999999999999999
Q ss_pred ChhHHhhccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCCc-HHHHHHHhcccCCCCCCC
Q psy14673 811 SPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPD-RMEFYDKLIEDKNAGGMA 889 (912)
Q Consensus 811 ~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~~~~~~~~i~~l~~~r~~~~p~~iv~~~~~~-~~~f~~~lveD~~~~~~S 889 (912)
++.++++||+|.+.++++..+..||++||.+|+++|++|.+|+..|..++|+.+++++.+. +..|...|+||++....|
T Consensus 911 ~~~llQ~lf~V~s~~~i~s~~~~Lpe~dn~lS~k~r~~i~~i~~~r~~~l~v~~~k~g~~~~~~~~~~~lved~~~~~~s 990 (1007)
T KOG1984|consen 911 DPDLLQDLFSVSSFEQIDSQSGVLPELDNPLSRKVRNVISLIRRQRSSELPVVLVKQGLDGSEVEFSEYLVEDRGRNISS 990 (1007)
T ss_pred CHHHHHHHhcCccccccccccccccccCcHHHHHHHHHHHHHHhccccccccEEEecCCCchhhhhhhhhhcccccCccc
Confidence 9999999999999999998889999999999999999999999988889999999988664 567789999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy14673 890 YYEFLLRIRDYQASVLT 906 (912)
Q Consensus 890 y~~fl~~l~~~i~~~~~ 906 (912)
|.||||.||++|++.|+
T Consensus 991 Y~dyL~~~H~ki~~~l~ 1007 (1007)
T KOG1984|consen 991 YVDYLCELHKKIQQKLS 1007 (1007)
T ss_pred cchHHHHHHHHHHhhcC
Confidence 99999999999999874
No 3
>PTZ00395 Sec24-related protein; Provisional
Probab=100.00 E-value=3.3e-121 Score=1071.52 Aligned_cols=583 Identities=24% Similarity=0.385 Sum_probs=535.7
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCC-------------CCCCce
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEG-------------QTQPSQ 378 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~-------------~~~~~~ 378 (912)
++||+||||||||..|+++|++.++|++|+++|+.|+ ++|+||||||||+.||||+|+.+ +.+|+|
T Consensus 950 p~PP~YvFLIDVS~~AVkSGLl~tacesIK~sLDsL~-dpRTRVGIITFDSsLHFYNLks~l~~~~~~~~~~~~l~qPQM 1028 (1560)
T PTZ00395 950 MLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVK-CPQTKIAIITFNSSIYFYHCKGGKGVSGEEGDGGGGSGNHQV 1028 (1560)
T ss_pred CCCCEEEEEEECCHHHHhhChHHHHHHHHHHHHhcCC-CCCcEEEEEEecCcEEEEecCcccccccccccccccCCCceE
Confidence 7899999999999999999999999999999999998 56899999999999999999764 468999
Q ss_pred eeccCccccCCCCC-CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC--CEEEEEecCCCCC
Q psy14673 379 MILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG--GRITIFQTCLPNR 455 (912)
Q Consensus 379 ~vv~dl~d~f~p~~-~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G--GrI~~f~~g~pt~ 455 (912)
+||+||||+|+|+| ++|||++.|+++.|+.||++|+++|.......+|+|+||++|..+|+..| |||++|.+++|++
T Consensus 1029 LVVSDLDDPFLPlP~ddLLVnL~ESRevIe~LLDkLPemFt~t~~~esCLGSALqAA~~aLk~~GGGGKIiVF~SSLPni 1108 (1560)
T PTZ00395 1029 IVMSDVDDPFLPLPLEDLFFGCVEEIDKINTLIDTIKSVSTTMQSYGSCGNSALKIAMDMLKERNGLGSICMFYTTTPNC 1108 (1560)
T ss_pred EeecCCccCcCCCCccCeeechHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHhcCCCceEEEEEcCCCCC
Confidence 99999999999998 89999999999999999999999999888999999999999999999876 9999999999999
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccC--hhhhcccccCCCceEEecCCCCCC
Q psy14673 456 GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD--LATLSGVSKFSSGCIHHIPLYSGK 533 (912)
Q Consensus 456 GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~--l~~l~~l~~~TGG~v~~~~~f~~~ 533 (912)
|||+|+.|++ ..++..++.+.++||++||.+|++.+|+||||+++..++| |++|+.|++.|||.++||+.|+.
T Consensus 1109 GpGaLK~Re~----~~KEk~Ll~pqd~FYK~LA~ECsk~qISVDLFLfSsqYvDVDVATLg~Lsr~TGGqlyyYPnFna- 1183 (1560)
T PTZ00395 1109 GIGAIKELKK----DLQENFLEVKQKIFYDSLLLDLYAFNISVDIFIISSNNVRVCVPSLQYVAQNTGGKILFVENFLW- 1183 (1560)
T ss_pred CCCccccccc----ccccccccccchHHHHHHHHHHHhcCCceEEEEccCcccccccccccchhcccceeEEEeCCCcc-
Confidence 9999997652 2256667888999999999999999999999999999876 79999999999999999999996
Q ss_pred CchhHHHHHHHHHHhhhc-ccccceeEEEEecCCceEEEEe--ecee--ccCCCceeeccCCCCCeEEEEEEEecccCCC
Q psy14673 534 NMSHVYQLDRMFSRYLTR-KIGFESVMRIRCTKGMSIHTFH--GNFF--VRSTDLLALPNVNPDAGYGIQISIDENLTHI 608 (912)
Q Consensus 534 ~~~~~~~~~~~l~~~l~~-~~g~~a~l~vr~S~gl~i~~~~--G~~~--~~~t~~~~l~~i~~~~si~~~~~~~~~l~~~ 608 (912)
..+..+|..+|.+.|++ ++||+|+||||||+||+|.++| |+++ .++++++.||.+++|++|+|+|++++++...
T Consensus 1184 -~rD~~KL~~DL~r~LTre~iGyEAVMRVRCS~GLrVs~fyG~GnnF~s~rStDLLaLP~Id~DqSfaVeLk~DEkL~~~ 1262 (1560)
T PTZ00395 1184 -QKDYKEIYMNIMDTLTSEDIAYCCELKLRYSHHMSVKKLFCCNNNFNSIISVDTIKIPKIRHDQTFAFLLNYSDISESK 1262 (1560)
T ss_pred -cccHHHHHHHHHHHhhccceeeEEEEEEECCCCeEEEEEeccCCccccccccccccccccCCCceEEEEEEeccccCCC
Confidence 35678999999999997 6999999999999999999999 4555 4578999999999999999999999999877
Q ss_pred ceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q psy14673 609 QYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 688 (912)
Q Consensus 609 ~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~y 688 (912)
..+|||+|+|||+.+|+|||||||+++|||+++.+||+++|++|++.+|+|+|+.+++++ .++|+.|.+.|+++|+.|
T Consensus 1263 ~~AYFQaALLYTSssGERRIRVHTLALPVTSsLseVFrsADqdAIvslLAK~AV~~aLss--sdARe~L~dklVdILtaY 1340 (1560)
T PTZ00395 1263 KQIYFQCACIYTNLWGDRFVRLHTTHMNLTSSLSTVFRYTDAEALMNILIKQLCTNILHN--DNYSKIIIDNLAAILFSY 1340 (1560)
T ss_pred CcEEEEEEEeeccCCCcEEEEEEeeeecccCCHHHHHHhhcHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999987 499999999999999999
Q ss_pred HHhhcCCCCC-ccccCcccChHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChhhhHhhhcceeeecccCCCCCC
Q psy14673 689 KMTQAGHLTG-SLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPT 767 (912)
Q Consensus 689 r~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~ 767 (912)
|++|+...++ +|+||++||+||+||++|+||++|+. .+++|+|++.+++++++++..++.+|||+||++|++..+.+
T Consensus 1341 RK~CAsssssgQLILPESLKLLPLYILSLLKS~AfRt--~I~sDeRVyaL~rL~SmPI~~Li~yLYPRLYpLHdL~~e~e 1418 (1560)
T PTZ00395 1341 RINCASSAHSGQLILPDTLKLLPLFTSSLLKHNVTKK--EILHDLKVYSLIKLLSMPIISSLLYVYPVMYVIHIKGKTNE 1418 (1560)
T ss_pred HHHhhccCCCccccchhHHHHHHHHHHHHhccccccC--CCCccHHHHHHHHHhCCCHHHHHhhhcCceEEccccccccc
Confidence 9999876555 59999999999999999999999984 57899999999999999999999999999999999854433
Q ss_pred cc--ccCCcccCCccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCcCCCCcccccCCCCchHHHHHH
Q psy14673 768 IE--WNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKL 845 (912)
Q Consensus 768 ~~--~~~~~~~~P~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~~~~~ 845 (912)
.. ..++.+.+|+.++||.+.|+++||||||+|..+|||||+.++++++++|||+.... ..+.+||++|++++.+|
T Consensus 1419 ~d~~d~d~~ivLPp~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLLqDLFGv~~~~---~~~~eLPelDT~iS~RV 1495 (1560)
T PTZ00395 1419 IDSMDVDDDLFIPKTIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFAKEIVGDIPTE---KNAHELNLTDTPNAQKV 1495 (1560)
T ss_pred CCccCCCCccccCCcccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHHHHHcCCCccc---cccccccCCCCHHHHHH
Confidence 21 22234678999999999999999999999999999999999999999999974322 22457899999999999
Q ss_pred HHHHHHHhhcC--CCcccEEEEeCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHhhhcCC
Q psy14673 846 NSFISYLNDDK--AYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIRDYQASVLTTT 908 (912)
Q Consensus 846 ~~~i~~l~~~r--~~~~p~~iv~~~~~~~~~f~~~lveD~~~~~~Sy~~fl~~l~~~i~~~~~~~ 908 (912)
|+||+.||+.| ..++|++||+++++.|.+|+.+||||++.+.+||.||||+|||+|.+.|..|
T Consensus 1496 rnII~~LR~~r~~~~Y~pL~IVRqgDp~E~~F~s~LVEDRs~g~~SYvDFLc~LHKqIq~kldes 1560 (1560)
T PTZ00395 1496 QRIIKNLSRIHHFNKYVPLVMVAPKSNEEEHLISLCVEDKADKEYSYVNFLCFIHKLVHKRIDES 1560 (1560)
T ss_pred HHHHHHHHHhccCCCcceEEEEeCCCchHHHHHHhCeecCCCCCCCHHHHHHHHHHHHHHhccCC
Confidence 99999998865 4678999999999999999999999999999999999999999999998753
No 4
>PLN00162 transport protein sec23; Provisional
Probab=100.00 E-value=3.3e-116 Score=1056.51 Aligned_cols=618 Identities=18% Similarity=0.240 Sum_probs=540.8
Q ss_pred ccccCCCCCCCcCCCCCCCCC--------------CCcCccCcccccCCCCCCCC---CCCCcccc--ccccEEEEeccc
Q psy14673 245 LLNTRDILPATKVEPPPIRLP--------------QNLPEIHEQFLYDRNTEMFG---DPYRRPEI--QSATVEYLATAD 305 (912)
Q Consensus 245 pl~~r~~lP~~~~~P~~~~~~--------------~~~~~~p~~~~~~~~~~~~~---d~~~rpEL--~~~tvEy~~p~~ 305 (912)
|+.+...+|.+.+.|+ +|.+ ++.|.||+|..+|.++..|. +.+.|||| .++||||++|+
T Consensus 39 Pl~~~~~vp~v~~~pv-RC~~CraylNPf~~~d~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~- 116 (761)
T PLN00162 39 PLKPLPELPVLPYDPL-RCRTCRAVLNPYCRVDFQAKIWICPFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPP- 116 (761)
T ss_pred cCCcCCCCCcCCCCCC-ccCCCcCEECCceEEecCCCEEEccCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCC-
Confidence 7777778999999884 8844 27899999999999988884 67899999 89999999998
Q ss_pred ccCCCCCCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeecc---
Q psy14673 306 YTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILT--- 382 (912)
Q Consensus 306 y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~--- 382 (912)
|+.+ ++.||+|+||||+|..+++ ++.++++|+.+|+.||+++ +|||||||+.||||+|+.+. .++++|+.
T Consensus 117 ~~~~-~~~pp~fvFvID~s~~~~~---l~~lk~sl~~~L~~LP~~a--~VGlITF~s~V~~~~L~~~~-~~~~~Vf~g~k 189 (761)
T PLN00162 117 GSGG-APSPPVFVFVVDTCMIEEE---LGALKSALLQAIALLPENA--LVGLITFGTHVHVHELGFSE-CSKSYVFRGNK 189 (761)
T ss_pred CCCC-CCCCcEEEEEEecchhHHH---HHHHHHHHHHHHHhCCCCC--EEEEEEECCEEEEEEcCCCC-CcceEEecCCc
Confidence 8888 8999999999999999887 6678899999999999887 99999999999999998654 57777765
Q ss_pred -----Cccc----------------------cCCCCCCCcccchhHhHHHHHHHHHhCCcc-c--cCCCCCCCcHHHHHH
Q psy14673 383 -----DIDD----------------------IFLPSPENILVNLSECYDMIVDLLKQLPGK-F--KDSLDSGSALGPALQ 432 (912)
Q Consensus 383 -----dl~d----------------------~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~-~--~~~~~~~~~~G~AL~ 432 (912)
++++ .|.|.+++||++++||++.|+++||+|+.. | ..++++.||+|+||+
T Consensus 190 ~~t~~~l~~~l~l~~~~~~~~~~~~~~~~~~~~~p~~~~fLvpl~e~~~~i~~lLe~L~~~~~~~~~~~rp~r~tG~AL~ 269 (761)
T PLN00162 190 EVSKDQILEQLGLGGKKRRPAGGGIAGARDGLSSSGVNRFLLPASECEFTLNSALEELQKDPWPVPPGHRPARCTGAALS 269 (761)
T ss_pred cCCHHHHHHHhccccccccccccccccccccccCCCccceeEEHHHHHHHHHHHHHhhhccccccCCCCCCCccHHHHHH
Confidence 2211 234566899999999999999999999964 3 568899999999999
Q ss_pred HHHHhhc----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCCCC-----CCCCCchHHHHHHHHHHHhhCCcEEEEEE
Q psy14673 433 AAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSNDD-----PPHMNPATDFYKKIALECTSFYIAVDLFI 502 (912)
Q Consensus 433 ~A~~ll~----~~GGrI~~f~~g~pt~GpG~l~~~~~~~~-~~~~~-----~~~~~~~~~fY~~La~~~~~~~isvdlf~ 502 (912)
+|..+|+ .+||||++|++|+||.|||+|+.|++... ++|++ +++++++.+||++||.+|+++||+||||+
T Consensus 270 vA~~lL~~~~~~~gGrI~~F~sgppT~GpG~v~~r~~~~~~rsh~di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~ 349 (761)
T PLN00162 270 VAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFA 349 (761)
T ss_pred HHHHHHhhccCCCceEEEEEeCCCCCCCCceeecccccccccCccccccchhhhcchHHHHHHHHHHHHHHcCceEEEEE
Confidence 9999998 58999999999999999999999874432 35533 47899999999999999999999999999
Q ss_pred ecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhcc------cccceeEEEEecCCceEEEEeece
Q psy14673 503 LNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRK------IGFESVMRIRCTKGMSIHTFHGNF 576 (912)
Q Consensus 503 ~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~~------~g~~a~l~vr~S~gl~i~~~~G~~ 576 (912)
++.+++||+||+.|++.|||.+++|++|+. +.|..+|.|.++++ +||+|+||||||+||+|++++|||
T Consensus 350 ~s~dqvglaem~~l~~~TGG~v~~~~sF~~------~~f~~~l~r~~~r~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~ 423 (761)
T PLN00162 350 CSLDQVGVAEMKVAVERTGGLVVLAESFGH------SVFKDSLRRVFERDGEGSLGLSFNGTFEVNCSKDVKVQGAIGPC 423 (761)
T ss_pred ccccccCHHHHhhhHhhcCcEEEEeCCcCh------HHHHHHHHHHhcccccccccccceeEEEEEecCCeEEeeeEcCc
Confidence 999999999999999999999999999986 67889999988863 899999999999999999999998
Q ss_pred ec---------------cCCCceeeccCCCCCeEEEEEEEeccc-----CCCceeEEEEEEEeeecCCCeEEEEEecccc
Q psy14673 577 FV---------------RSTDLLALPNVNPDAGYGIQISIDENL-----THIQYACFQVAVLYTSSKGDRRIRVHTLCLP 636 (912)
Q Consensus 577 ~~---------------~~t~~~~l~~i~~~~si~~~~~~~~~l-----~~~~~~~iQ~allYt~~~G~rriRV~T~~l~ 636 (912)
+. ++|+.|++++++++++|+|+|+++++. .+...+||||+++||+.+|+|||||||++++
T Consensus 424 ~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~ 503 (761)
T PLN00162 424 ASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRR 503 (761)
T ss_pred ccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCCCCCceEEEEEEEEEEcCCCCEEEEEEccccC
Confidence 62 457899999999999999999999875 3456799999999999999999999999999
Q ss_pred ccc--CHHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccChHHHHHH
Q psy14673 637 VVS--NINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKLLPLYVL 714 (912)
Q Consensus 637 vt~--~~~~v~~~~D~~a~~~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~lP~~~~ 714 (912)
++. ++.+++++||+||++++|||+|+++++++++.|+|+||+++|++++.+|+.+ .++.+++|+||++|++||+|||
T Consensus 504 ~~~~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li~~~~~f~~Y-rk~~~~s~~Lp~~~~~lP~f~~ 582 (761)
T PLN00162 504 WVEGSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGDY-RKDDPSSFRLSPNFSLYPQFMF 582 (761)
T ss_pred ccCCCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhh-cccCCccccCCHHHHHHHHHHH
Confidence 754 7889999999999999999999999999999999999999999999988884 5677788999999999999999
Q ss_pred HHhcCccccCCCCCChhHHHHHHHHHcCCChhhhHhhhcceeeecccCCCCCCccccCCcccCCccccccccccccCeEE
Q psy14673 715 ALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTY 794 (912)
Q Consensus 715 ~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~giy 794 (912)
||+||++|+.+ |++||||+|+|+.|+++++.+++.||||+||+||. ++ .|..+.||.++|++|+||
T Consensus 583 ~LrRS~~l~~~-n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~~---------~~----~P~pv~Ld~~si~~d~il 648 (761)
T PLN00162 583 NLRRSQFVQVF-NNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSF---------NG----PPEPVLLDVASIAADRIL 648 (761)
T ss_pred HHhhhhhccCC-CCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEecC---------CC----CCcceecchhhccCCceE
Confidence 99999999986 99999999999999999999999999999999992 11 344577999999999999
Q ss_pred EEeCCceEEEEecCCCChhHHhhccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCCcHHH
Q psy14673 795 LLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRME 874 (912)
Q Consensus 795 LlD~g~~i~i~vg~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~~~~~~~~i~~l~~~r~~~~p~~iv~~~~~~~~~ 874 (912)
|||+|++|+||+|+.|.+|+. .+|++.|++-.. .+.-+..+...+.|-.+| |+.|++|+++.+++++|
T Consensus 649 LLD~~f~vvi~~G~~ia~w~~------~~~~~~~~~~~~-----~~~l~~p~~~a~~~~~~R-fp~Pr~i~~~~~~SqaR 716 (761)
T PLN00162 649 LLDSYFSVVIFHGSTIAQWRK------AGYHNQPEHEAF-----AQLLEAPQADAQAIIKER-FPVPRLVVCDQHGSQAR 716 (761)
T ss_pred EEeCCCEEEEEecCcccchhh------cCCCCCcchhhH-----HHHHHhHHHHHHHHHhcC-CCCCeEEEeCCCCcHHH
Confidence 999999999999999999994 555555543100 011122333444454454 99999999999999999
Q ss_pred HHHHhcccCC---------------CCCCCHHHHHHHHHHHHHhh
Q psy14673 875 FYDKLIEDKN---------------AGGMAYYEFLLRIRDYQASV 904 (912)
Q Consensus 875 f~~~lveD~~---------------~~~~Sy~~fl~~l~~~i~~~ 904 (912)
|+..++++.+ .+|+|+..||.||+|.+|+.
T Consensus 717 fl~~klnPs~~~~~~~~~~~~~~~~tdd~sl~~f~~~l~~~~v~~ 761 (761)
T PLN00162 717 FLLAKLNPSATYNSANAMGGSDIIFTDDVSLQVFMEHLQRLAVQS 761 (761)
T ss_pred HHHHhcCCcccccCCCCCCCCCeeecCCcCHHHHHHHHHHHhcCC
Confidence 9999999982 36899999999999999863
No 5
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-115 Score=971.85 Aligned_cols=626 Identities=35% Similarity=0.604 Sum_probs=585.5
Q ss_pred CcCccCcccccCCC----------CCCCCCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEccHhHHhhchHHHH
Q psy14673 267 NLPEIHEQFLYDRN----------TEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTV 336 (912)
Q Consensus 267 ~~~~~p~~~~~~~~----------~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~ 336 (912)
+.|.|..|-..|.+ ...|.|.+.|+||.+++|||++|++|+.| .+.|++|||+||||..++++|++.++
T Consensus 220 ~kw~CNiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~~~vvdf~ap~~Y~~~-~p~P~~yvFlIDVS~~a~~~g~~~a~ 298 (861)
T COG5028 220 RKWRCNICRSKNDVPEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYSLR-QPPPPVYVFLIDVSFEAIKNGLVKAA 298 (861)
T ss_pred cEEEEeeccccccCcccccCcCCCCCccccccccchhhceeeEEecccceeec-cCCCCEEEEEEEeehHhhhcchHHHH
Confidence 57888888754421 12345799999999999999999999999 66799999999999999999999999
Q ss_pred HHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC-CCcccchhHhHHHHHHHHHhCC
Q psy14673 337 CEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLP 414 (912)
Q Consensus 337 ~~si~~~L~~lp~-~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~-~~~lv~l~e~~~~i~~lL~~L~ 414 (912)
.++|++.|+.+|+ ++|+||+||.||+.|||++++.+. ..+|++++|+|++|+|.+ ..|++++.+|+..++.||+.++
T Consensus 299 ~r~Il~~l~~~~~~dpr~kIaii~fD~sl~ffk~s~d~-~~~~~~vsdld~pFlPf~s~~fv~pl~~~k~~~etLl~~~~ 377 (861)
T COG5028 299 IRAILENLDQIPNFDPRTKIAIICFDSSLHFFKLSPDL-DEQMLIVSDLDEPFLPFPSGLFVLPLKSCKQIIETLLDRVP 377 (861)
T ss_pred HHHHHhhccCCCCCCCcceEEEEEEcceeeEEecCCCC-ccceeeecccccccccCCcchhcccHHHHHHHHHHHHHHhh
Confidence 9999999999976 689999999999999999998876 337899999999999998 4689999999999999999999
Q ss_pred ccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhC
Q psy14673 415 GKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSF 494 (912)
Q Consensus 415 ~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~ 494 (912)
.+|.+++.++.|+|.||++|..|++.+||||++|.+..||.|.|+|..|+| +|..++.+.+.|||++|.+|.+.
T Consensus 378 ~If~d~~~pk~~~G~aLk~a~~l~g~~GGkii~~~stlPn~G~Gkl~~r~d------~e~~ll~c~d~fYk~~a~e~~k~ 451 (861)
T COG5028 378 RIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQLRED------KESSLLSCKDSFYKEFAIECSKV 451 (861)
T ss_pred hhhcccCCCccccCHHHHHHHHHhhccCceEEEEeecCCCccccccccccc------chhhhccccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999876 34458899999999999999999
Q ss_pred CcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEEEee
Q psy14673 495 YIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHG 574 (912)
Q Consensus 495 ~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~~~g~~a~l~vr~S~gl~i~~~~G 574 (912)
||+||+|+++.+|+|+++++.|+++|||.+++|++|+.+++.|..+|.+||.++++++.||+++||||||+|+++.+|||
T Consensus 452 gIsvd~Flt~~~yidvaTls~l~~~T~G~~~~Yp~f~~~~~~d~~kl~~dL~~~ls~~~gy~~~~rvR~S~glr~s~fyG 531 (861)
T COG5028 452 GISVDLFLTSEDYIDVATLSHLCRYTGGQTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYG 531 (861)
T ss_pred cceEEEEeccccccchhhhcchhhccCcceEEcCCcccCCchhHHHHHHHHHHhhhhhhhhheeeEeeccCceehhhhhc
Confidence 99999999999999999999999999999999999998777799999999999999999999999999999999999999
Q ss_pred ceeccCCCceeeccCCCCCeEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHH
Q psy14673 575 NFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIA 654 (912)
Q Consensus 575 ~~~~~~t~~~~l~~i~~~~si~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~ 654 (912)
|++.|+.+++.|+.++.|+|+.|+|++|+++.. ..+|||.|++||..+|+|||||.|+++++++++.++|+++|++|++
T Consensus 532 nf~~rs~dl~~F~tm~rd~Sl~~~~sid~~l~~-~~v~fQvAlL~T~~~GeRRiRVvn~s~~~ss~~~evyasadq~aIa 610 (861)
T COG5028 532 NFFNRSSDLCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQVALLYTLNDGERRIRVVNLSLPTSSSIREVYASADQLAIA 610 (861)
T ss_pred cccccCcccccccccCCCceEEEEEEecccccC-CceEEEEEEEeeccCCceEEEEEEeccccchhHHHHHHhccHHHHH
Confidence 999999999999999999999999999999976 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccChHHHHHHHHhcCccccCCCCCChhHH
Q psy14673 655 GLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDR 733 (912)
Q Consensus 655 ~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der 733 (912)
.+|+|+|+.++.++.+.++|+.|++.++++|+.||+.+++.+.+ .+.||++|++||++|++|+||.+||.+ .++.|+|
T Consensus 611 ~~lak~a~~~~~~~s~~~~r~~i~~s~~~IL~~Ykk~~~~snt~tql~Lp~nL~lLPll~lal~Ks~~~rs~-~~~sD~r 689 (861)
T COG5028 611 CILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQLPLPANLKLLPLLMLALLKSSAFRSG-STPSDIR 689 (861)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHhhhcccccC-CCccchh
Confidence 99999999999999999999999999999999999988776655 599999999999999999999999965 7889999
Q ss_pred HHHHHHHcCCChhhhHhhhcceeeecccCCCCCCccccCCcccCCccccccccccccCeEEEEeCCceEEEEecCCCChh
Q psy14673 734 LFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPA 813 (912)
Q Consensus 734 ~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~~ 813 (912)
++++..+.++++..+++.|||+||++|++.++.|..+++ ....|..++++.+.|+++|+||+|+|.++|+|+|+++++.
T Consensus 690 ~~~L~~l~~~p~~~l~~~iYP~lyalHdm~~e~~l~~~~-~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~ 768 (861)
T COG5028 690 ISALNRLTSLPLKQLMRNIYPTLYALHDMPIEAGLPDEG-LLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPS 768 (861)
T ss_pred HHHHHHhhcCCHHHHHHhhccceeeecccccccCCCccc-ccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHH
Confidence 999999999999999999999999999999998776443 4567778999999999999999999999999999999999
Q ss_pred HHhhccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhh-cCCCcccEEEEeCCCC-c-HHHHHHHhcccCCCCCCCH
Q psy14673 814 ICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLND-DKAYVSPVKVIKDSSP-D-RMEFYDKLIEDKNAGGMAY 890 (912)
Q Consensus 814 ~~~~lfg~~~~~~~~~~~~~lp~~d~~~~~~~~~~i~~l~~-~r~~~~p~~iv~~~~~-~-~~~f~~~lveD~~~~~~Sy 890 (912)
+++||||++++.+|+..-.++|..++++|+++|+||+.||. .+....|+++||++++ + +.+|+..||||++.+..||
T Consensus 769 Ll~dlf~~~~~~~I~~~k~~~p~~~n~~n~~v~~iI~~lrs~~~~~tl~lvlVR~~~d~s~~~~~~s~lVEDk~~n~~SY 848 (861)
T COG5028 769 LLQDLFGVDSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFSTLVEDKTLNIPSY 848 (861)
T ss_pred HHHHhcCcchhhhccccccccCCcCCHHHHHHHHHHHHHHhhCCCCccceEEEecCCCcchhhheehheecccccCCccH
Confidence 99999999999999988889999999999999999999998 5556678999999864 4 7899999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy14673 891 YEFLLRIRDYQAS 903 (912)
Q Consensus 891 ~~fl~~l~~~i~~ 903 (912)
.|||+.||++|++
T Consensus 849 ~~yL~~lh~ki~~ 861 (861)
T COG5028 849 LDYLQILHEKIKS 861 (861)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
No 6
>KOG1986|consensus
Probab=100.00 E-value=2.2e-108 Score=912.30 Aligned_cols=620 Identities=19% Similarity=0.272 Sum_probs=542.5
Q ss_pred cccCCCCCccc-------ccccCCCCCCCcCCCCCCCCC--------------CCcCccCcccccCCCCCCCC---CCCC
Q psy14673 234 MNKMWGYEPHD-------LLNTRDILPATKVEPPPIRLP--------------QNLPEIHEQFLYDRNTEMFG---DPYR 289 (912)
Q Consensus 234 ~sr~~~~~~v~-------pl~~r~~lP~~~~~P~~~~~~--------------~~~~~~p~~~~~~~~~~~~~---d~~~ 289 (912)
++|.++.+.|+ |+++++.+|+.+|+|. .|.+ ++.|.|||||.+|+++.+|. +.+.
T Consensus 21 s~~~~~~~~vvPla~lytPl~e~~~~~~~~y~P~-~C~~C~AvlNPyc~vd~~a~~W~CpfC~qrN~~p~~Y~~is~~n~ 99 (745)
T KOG1986|consen 21 STRAEASRTVVPLACLYTPLKERPDLPPIQYDPL-RCSKCGAVLNPYCSVDFRAKSWICPFCNQRNPFPPHYSGISENNL 99 (745)
T ss_pred CcccccccccccHHHhccccccCCCCCccCCCCc-hhccchhhcCcceeecccCceEeccccccCCCCChhhcccCccCC
Confidence 55778888887 7788999999999995 8966 27999999999999999995 6799
Q ss_pred cccc--ccccEEEEecccccCCCCCCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEE
Q psy14673 290 RPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY 367 (912)
Q Consensus 290 rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y 367 (912)
|+|| .++||||++++. +..||+|+||||+|....+ |+.++++|+.+|+.||+++ +|||||||+.|+||
T Consensus 100 P~el~Pq~stvEy~l~~~-----~~~ppvf~fVvDtc~~eee---L~~LkssL~~~l~lLP~~a--lvGlItfg~~v~v~ 169 (745)
T KOG1986|consen 100 PPELLPQYSTVEYTLSPG-----RVSPPVFVFVVDTCMDEEE---LQALKSSLKQSLSLLPENA--LVGLITFGTMVQVH 169 (745)
T ss_pred ChhhcCCcceeEEecCCC-----CCCCceEEEEEeeccChHH---HHHHHHHHHHHHhhCCCcc--eEEEEEecceEEEE
Confidence 9999 899999999853 4569999999999998766 8899999999999999998 99999999999999
Q ss_pred EcCCCCCCCceeeccCccc--------cC------------CCCCCCcccchhHhHHHHHHHHHhCCc-cc--cCCCCCC
Q psy14673 368 SLAEGQTQPSQMILTDIDD--------IF------------LPSPENILVNLSECYDMIVDLLKQLPG-KF--KDSLDSG 424 (912)
Q Consensus 368 ~l~~~~~~~~~~vv~dl~d--------~f------------~p~~~~~lv~l~e~~~~i~~lL~~L~~-~~--~~~~~~~ 424 (912)
+|+... ..+.+|...-+| .. .....+||.|+.+|...+.++|++|.. .| +.++|+.
T Consensus 170 el~~~~-~sk~~VF~G~ke~s~~q~~~~L~~~~~~~~~~~~~~~~~rFL~P~~~c~~~L~~lle~L~~d~wpV~~g~Rp~ 248 (745)
T KOG1986|consen 170 ELGFEE-CSKSYVFSGNKEYSAKQLLDLLGLSGGAGKGSENQSASNRFLLPAQECEFKLTNLLEELQPDPWPVPPGHRPL 248 (745)
T ss_pred EcCCCc-ccceeEEeccccccHHHHHHHhcCCcccccCCcccccchhhhccHHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 998753 455556442211 10 001247999999999999999999984 55 6799999
Q ss_pred CcHHHHHHHHHHhhcC----CCCEEEEEecCCCCCCCCcccCCC--CCCCCCCC-----CCCCCCchHHHHHHHHHHHhh
Q psy14673 425 SALGPALQAAFKLLQP----TGGRITIFQTCLPNRGPGALQSRE--NPNQRSND-----DPPHMNPATDFYKKIALECTS 493 (912)
Q Consensus 425 ~~~G~AL~~A~~ll~~----~GGrI~~f~~g~pt~GpG~l~~~~--~~~~~~~~-----~~~~~~~~~~fY~~La~~~~~ 493 (912)
||+|+||++|+.||+. +|+||++|++||||.|||+|++++ ++++ +|+ .+.|++++.|||++||++++.
T Consensus 249 RcTG~Al~iA~~Ll~~c~p~~g~rIv~f~gGPcT~GpG~vv~~el~~piR-shhdi~~d~a~y~kKa~KfY~~La~r~~~ 327 (745)
T KOG1986|consen 249 RCTGVALSIASGLLEGCFPNTGARIVLFAGGPCTRGPGTVVSRELKEPIR-SHHDIEKDNAPYYKKAIKFYEKLAERLAN 327 (745)
T ss_pred cchhHHHHHHHHHhcccCCCCcceEEEeccCCCCcCCceecchhhcCCCc-CcccccCcchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986 899999999999999999999987 5555 442 257899999999999999999
Q ss_pred CCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhh------cccccceeEEEEecCCc
Q psy14673 494 FYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLT------RKIGFESVMRIRCTKGM 567 (912)
Q Consensus 494 ~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~------~~~g~~a~l~vr~S~gl 567 (912)
+|++||||+++.|++|++||+.|++.|||.+.+.++|+. +.|...++|+++ ..+||+|.|+|+||++|
T Consensus 328 ~ghvlDifa~~lDQvGi~EMk~l~~~TGG~lvl~dsF~~------s~Fk~sfqR~f~~d~~~~l~~~fn~~leV~tSkdl 401 (745)
T KOG1986|consen 328 QGHVLDIFAAALDQVGILEMKPLVESTGGVLVLGDSFNT------SIFKQSFQRIFTRDGEGDLKMGFNGTLEVKTSKDL 401 (745)
T ss_pred CCceEeeeeeeccccchHHHHHHhhcCCcEEEEecccch------HHHHHHHHHHhccccccchhhhcCceEEEEecCCc
Confidence 999999999999999999999999999999999999996 566667777766 57999999999999999
Q ss_pred eEEEEeeceec---------------cCCCceeeccCCCCCeEEEEEEEeccc--CCCceeEEEEEEEeeecCCCeEEEE
Q psy14673 568 SIHTFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDENL--THIQYACFQVAVLYTSSKGDRRIRV 630 (912)
Q Consensus 568 ~i~~~~G~~~~---------------~~t~~~~l~~i~~~~si~~~~~~~~~l--~~~~~~~iQ~allYt~~~G~rriRV 630 (912)
+|++.+|++.. ++|..|+++.+++.+++++.|++...- +.+..+||||++.|.+++|++|+||
T Consensus 402 kI~g~IGp~~Sl~~k~~~vsdt~ig~g~t~~wkm~~ls~~t~~s~~fei~~~~~~~~~~~~~iQFiT~Yq~s~g~~riRV 481 (745)
T KOG1986|consen 402 KIQGVIGPCVSLNKKGPNVSDTEIGEGNTSAWKMCGLSPSTTLSLFFEISNQHNIPQSGQGYIQFITQYQHSSGQKRIRV 481 (745)
T ss_pred EEEecccccccccCCCCccccceeccccccceeeeccCCCceEEEEEEeccccCCCCCCeeEEEEEEEEEcCCCcEEEEE
Confidence 99999999862 467899999999999999999998753 3456899999999999999999999
Q ss_pred EecccccccCH-HHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccCcccChH
Q psy14673 631 HTLCLPVVSNI-NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKLL 709 (912)
Q Consensus 631 ~T~~l~vt~~~-~~v~~~~D~~a~~~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~~l~lp~~l~~l 709 (912)
+|+++++++.. .++..+||+||++++|||+++.++.+++..|+++|+|+.||+++++|++ +.|++|+++.|+++|.+|
T Consensus 482 tT~~r~~~d~~~~~i~~~FDqEaaAV~mAR~~~~kae~e~~~d~~rwlDr~Lirlc~kFg~-y~k~dPssf~l~~~fsl~ 560 (745)
T KOG1986|consen 482 TTLARPWADSGSPEISQSFDQEAAAVLMARLALLKAETEDGPDVLRWLDRNLIRLCQKFGD-YRKDDPSSFRLSPNFSLY 560 (745)
T ss_pred EEeehhhccccchHhhhccchHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHhc-cCCCCchhhcCChhhhhh
Confidence 99999999876 6899999999999999999999999999999999999999999999999 588999999999999999
Q ss_pred HHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChhhhHhhhcceeeecccCCCCCCccccCCcccCCccccccccccc
Q psy14673 710 PLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQ 789 (912)
Q Consensus 710 P~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~ 789 (912)
|+|||+||||++|..+ |.|||||+|++++|.+.++++++.||.|+|++|+. ++ .+.| +.|+..+|.
T Consensus 561 PQfmfhLRRS~fLqvf-NnSPDEt~~yrhll~~e~v~~sliMIqP~L~sySf---------~g--~~ep--vlLD~~Si~ 626 (745)
T KOG1986|consen 561 PQFMFHLRRSPFLQVF-NNSPDETAYYRHLLNREDVDNSLIMIQPTLLSYSF---------NG--PPEP--VLLDVASIL 626 (745)
T ss_pred HHHHHhhccchhhhcc-CCCcchHHHHHHHHhhccchhhhheecceeeeeec---------CC--CCce--eEecccccC
Confidence 9999999999999997 99999999999999999999999999999999983 22 2334 559999999
Q ss_pred cCeEEEEeCCceEEEEecCCCChhHHhhccCCCCcCCCCcc-----cccCCCCchHHHHHHHHHHHHHhhcCCCcccEEE
Q psy14673 790 ATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQLSLKLNSFISYLNDDKAYVSPVKV 864 (912)
Q Consensus 790 ~~giyLlD~g~~i~i~vg~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~~~~~~~~~i~~l~~~r~~~~p~~i 864 (912)
+|.|+|||++|+|+||+|..|.+|+ ..+|.+.|++ +++.|..|+ +.|-..| |+.|++|
T Consensus 627 ~D~iLLlDt~f~i~i~hG~tIaqWR------~~gy~~~pe~~~f~~LL~ap~~dA----------~el~~~R-FP~PR~v 689 (745)
T KOG1986|consen 627 ADRILLLDTYFTIVIFHGSTIAQWR------KAGYHEQPEYENFKELLEAPREDA----------QELLLER-FPMPRYV 689 (745)
T ss_pred CceEEEeecceEEEEECCchHHHHH------hcccccChhhHHHHHHHHhHHHHH----------HHHHHhh-CCCCeEE
Confidence 9999999999999999999999999 5566666554 223333322 2333333 9999999
Q ss_pred EeCCCCcHHHHHHHhcccCC---------------CCCCCHHHHHHHHHHHHHhh
Q psy14673 865 IKDSSPDRMEFYDKLIEDKN---------------AGGMAYYEFLLRIRDYQASV 904 (912)
Q Consensus 865 v~~~~~~~~~f~~~lveD~~---------------~~~~Sy~~fl~~l~~~i~~~ 904 (912)
+++.+++++||+..+++++. .+|+||.+||.||+|.+|+.
T Consensus 690 ~~~q~GSQARFLlsklnPS~t~~~~~~~~~s~~I~TDDvSlq~fm~hLkklav~~ 744 (745)
T KOG1986|consen 690 VTDQGGSQARFLLSKLNPSETHNNLTAHGGSSIILTDDVSLQVFMEHLKKLAVSS 744 (745)
T ss_pred EecCCccHHHhhhhhcCcchhccchhhccCCCeeeeccccHHHHHHHHHhhcCCC
Confidence 99999999999999999952 27899999999999998763
No 7
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-97 Score=800.75 Aligned_cols=621 Identities=19% Similarity=0.270 Sum_probs=532.7
Q ss_pred CcccCCCCCccc-------ccccCCCCCCCcCCCCCCCCC---------------CCcCccCcccccCCCCCCCCC---C
Q psy14673 233 GMNKMWGYEPHD-------LLNTRDILPATKVEPPPIRLP---------------QNLPEIHEQFLYDRNTEMFGD---P 287 (912)
Q Consensus 233 ~~sr~~~~~~v~-------pl~~r~~lP~~~~~P~~~~~~---------------~~~~~~p~~~~~~~~~~~~~d---~ 287 (912)
..+|-++.+.++ |+++...++...|+|. .|.. .+.|.||+|..+|+.|.+|.| .
T Consensus 20 pat~~da~~~~iPia~lY~Pl~e~~~~~v~~yepv-~C~~pC~avlnpyC~id~r~~~W~CpfCnqrn~lp~qy~~iS~~ 98 (755)
T COG5047 20 PATRGDATRTVIPIACLYTPLHEDDALTVNYYEPV-KCTAPCKAVLNPYCHIDERNQSWICPFCNQRNTLPPQYRDISNA 98 (755)
T ss_pred cCCccccccccccHHHhccccccccccCcccCCCc-eecccchhhcCcceeeccCCceEecceecCCCCCChhhcCCCcc
Confidence 356788888777 7788888999999995 8855 158999999999999999975 5
Q ss_pred CCcccc--ccccEEEEecccccCCCCCCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEE
Q psy14673 288 YRRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVH 365 (912)
Q Consensus 288 ~~rpEL--~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~ 365 (912)
+.++|| +++||||+++++ +-.||+|+||||+|.+..+ |.+++++|+.+|..+|+++ .||||||++.|+
T Consensus 99 ~LplellpqssTiey~lskp-----~~~ppvf~fvvD~~~D~e~---l~~Lkdslivslsllppea--LvglItygt~i~ 168 (755)
T COG5047 99 NLPLELLPQSSTIEYTLSKP-----VILPPVFFFVVDACCDEEE---LTALKDSLIVSLSLLPPEA--LVGLITYGTSIQ 168 (755)
T ss_pred cCCccccCCCceEEEEccCC-----ccCCceEEEEEEeecCHHH---HHHHHHHHHHHHhcCCccc--eeeEEEecceeE
Confidence 889999 899999999863 5679999999999997665 9999999999999999998 999999999999
Q ss_pred EEEcCCCCCCCceeeccC--------ccccC------CC-------------CCCCcccchhHhHHHHHHHHHhCC-ccc
Q psy14673 366 FYSLAEGQTQPSQMILTD--------IDDIF------LP-------------SPENILVNLSECYDMIVDLLKQLP-GKF 417 (912)
Q Consensus 366 ~y~l~~~~~~~~~~vv~d--------l~d~f------~p-------------~~~~~lv~l~e~~~~i~~lL~~L~-~~~ 417 (912)
+|+++... ..+..|.+. +++.. -| .+.+|+.++.+|+..+.++|++|. +.|
T Consensus 169 v~el~ae~-~~r~~VF~g~~eyt~~~L~~ll~~~~~~~~~~~es~is~~~~~~~~rFl~p~q~ce~~L~n~le~L~pd~~ 247 (755)
T COG5047 169 VHELNAEN-HRRSYVFSGNKEYTKENLQELLALSKPTKSGGFESKISGIGQFASSRFLLPTQQCEFKLLNILEQLQPDPW 247 (755)
T ss_pred EEeccccc-cCcceeecchHHHHHHHHHHHhcccCCCCcchhhhhcccccccchhhhhccHHHHHHHHHHHHHHhCCCCc
Confidence 99998643 344444321 11110 01 124589999999999999999998 455
Q ss_pred --cCCCCCCCcHHHHHHHHHHhhcC----CCCEEEEEecCCCCCCCCcccCCC--CCCCCCC---CC-CCCCCchHHHHH
Q psy14673 418 --KDSLDSGSALGPALQAAFKLLQP----TGGRITIFQTCLPNRGPGALQSRE--NPNQRSN---DD-PPHMNPATDFYK 485 (912)
Q Consensus 418 --~~~~~~~~~~G~AL~~A~~ll~~----~GGrI~~f~~g~pt~GpG~l~~~~--~~~~~~~---~~-~~~~~~~~~fY~ 485 (912)
..++|+.||+|+||.+|..||+. .|+||++|++||||.|||.|++++ ++.|..| .| ++|.+++.+||+
T Consensus 248 ~v~~~~Rp~RCTGsAl~ias~Ll~~~~p~~~~~i~lF~~GPcTvGpG~Vvs~elkEpmRshH~ie~d~aqh~kka~KFY~ 327 (755)
T COG5047 248 PVPAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQHSKKATKFYK 327 (755)
T ss_pred cCCCCCCCccccchhHHHHHHHHHhhccCcceeEEEEcCCCccccCceeeehhhcccccccccccccchhhccchHHHHH
Confidence 67899999999999999999985 799999999999999999999986 5555333 22 689999999999
Q ss_pred HHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhc------ccccceeE
Q psy14673 486 KIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR------KIGFESVM 559 (912)
Q Consensus 486 ~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~------~~g~~a~l 559 (912)
+||++.+.+|+++|+|+.+.|++|+.||+.|...|||.+.+.++|+. +.|...+.|++.+ .+||+|.|
T Consensus 328 ~laeR~a~~gh~~DifagcldqIGI~eM~~L~~sTgg~lvlsdsF~t------~ifkqSfqrif~~d~~g~l~~gfNa~m 401 (755)
T COG5047 328 GLAERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGGALVLSDSFTT------SIFKQSFQRIFNRDSEGYLKMGFNANM 401 (755)
T ss_pred HHHHHHhccchhHHHHHHHHHhhhhhcchhhccCCcceEEEeccccH------HHHHHHHHHHhCcCcccchhhhhccce
Confidence 99999999999999999999999999999999999999999999997 3444455554443 58999999
Q ss_pred EEEecCCceEEEEeeceec---------------cCCCceeeccCCCCCeEEEEEEEecccCC-----CceeEEEEEEEe
Q psy14673 560 RIRCTKGMSIHTFHGNFFV---------------RSTDLLALPNVNPDAGYGIQISIDENLTH-----IQYACFQVAVLY 619 (912)
Q Consensus 560 ~vr~S~gl~i~~~~G~~~~---------------~~t~~~~l~~i~~~~si~~~~~~~~~l~~-----~~~~~iQ~allY 619 (912)
+|.|||+++|++++|+... +.|+.|+++.+++.+++++.|++...... ...+||||.+.|
T Consensus 402 ~V~TsKnl~~~g~ig~a~~~~k~~~ni~~~eigi~~t~swkm~slsPk~nyal~fei~~~~~~~~~~~~~~a~iQfiT~y 481 (755)
T COG5047 402 EVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRPAEAYIQFITTY 481 (755)
T ss_pred eEeeccCceeeeeecceeeecccccccccccccccccccccccccCCCcceEEEEEeccccCCCccCCcccchhhhhhhh
Confidence 9999999999999998762 34778999999999999999999865432 257999999999
Q ss_pred eecCCCeEEEEEecccccccC-HHHHHhccCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy14673 620 TSSKGDRRIRVHTLCLPVVSN-INDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG 698 (912)
Q Consensus 620 t~~~G~rriRV~T~~l~vt~~-~~~v~~~~D~~a~~~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~ 698 (912)
.+++|.-||||+|++..+++. ...++++||+||+++++||+|+.|+..++..|+.+|+|+.++++++.|.. +.|++|+
T Consensus 482 Qhss~t~riRVtTvar~f~~~~~p~i~~SFdqEaaaV~~aR~a~~K~~~ed~~Dv~rw~dr~lirlcq~fa~-y~k~dps 560 (755)
T COG5047 482 QHSSGTYRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQKFAD-YRKDDPS 560 (755)
T ss_pred hccCCcEEEEEeehhhhhccCCChhhhhcchhhHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHh-cCCCCch
Confidence 999999999999999988864 56788999999999999999999999999999999999999999999999 5899999
Q ss_pred ccccCcccChHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChhhhHhhhcceeeecccCCCCCCccccCCcccCC
Q psy14673 699 SLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIP 778 (912)
Q Consensus 699 ~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P 778 (912)
++.|+.+|.++|+|||+|+||++|..+ |.|||||+||+|+|.+.++++++.||.|+|.+||.. ++ ..|
T Consensus 561 sfrl~~~f~lypqf~y~lrRSpfL~vf-NnSPDEt~fyrh~l~~~dv~~sLimiqPtL~Sys~~---------~~--~~p 628 (755)
T COG5047 561 SFRLDPNFTLYPQFMYHLRRSPFLSVF-NNSPDETAFYRHMLNNADVNDSLIMIQPTLQSYSFE---------KG--GVP 628 (755)
T ss_pred hhcCCcchhhhhHHHhhhhccceeecc-CCCcchHHHHHHHHhcccccchhhhhcchheeeecc---------CC--Cce
Confidence 999999999999999999999999997 999999999999999999999999999999999942 21 123
Q ss_pred ccccccccccccCeEEEEeCCceEEEEecCCCChhHHhhccCCCCcCCCCcc-----cccCCCCchHHHHHHHHHHHHHh
Q psy14673 779 RILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPET-----LFELPQLETQLSLKLNSFISYLN 853 (912)
Q Consensus 779 ~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~~~~~~lfg~~~~~~~~~~-----~~~lp~~d~~~~~~~~~~i~~l~ 853 (912)
+-||+-++++|.|+|||++++|+||.|+.+.+|+ ...|++-+++ +++.|+++..+ .|.
T Consensus 629 --VlLDs~svkpdviLLlDtff~Ili~hG~~iaqwr------~agyq~qpey~~lK~Ll~~p~~ea~e---------ll~ 691 (755)
T COG5047 629 --VLLDSVSVKPDVILLLDTFFHILIFHGSYIAQWR------NAGYQEQPEYLNLKELLEAPRLEAAE---------LLQ 691 (755)
T ss_pred --EEEeccccCCCeEEEeeceeEEEEECChHHHHHH------hhhhhcCchhhhHHHHhhchhhHHHH---------HHH
Confidence 4489999999999999999999999999999999 4456665555 23344333222 344
Q ss_pred hcCCCcccEEEEeCCCCcHHHHHHHhcccCC--------------CCCCCHHHHHHHHHHHHHh
Q psy14673 854 DDKAYVSPVKVIKDSSPDRMEFYDKLIEDKN--------------AGGMAYYEFLLRIRDYQAS 903 (912)
Q Consensus 854 ~~r~~~~p~~iv~~~~~~~~~f~~~lveD~~--------------~~~~Sy~~fl~~l~~~i~~ 903 (912)
++ |+.|++|+++.+++++||+...|++.. .++++|.+|+.||.|.+|.
T Consensus 692 dR--fP~Prfi~teqggSQaRfLlskinPsd~~~~~~~~~s~tilTddv~lq~fm~hl~~lav~ 753 (755)
T COG5047 692 DR--FPIPRFIVTEQGGSQARFLLSKINPSDITNKMSGGGSETILTDDVNLQKFMNHLRKLAVS 753 (755)
T ss_pred hh--CCCCeEEEecCCccHHHHHHhhcCccccccccccCccceeeecccCHHHHHHHHHHHhcc
Confidence 44 899999999999999999999998872 2689999999999999875
No 8
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=100.00 E-value=1.5e-53 Score=451.07 Aligned_cols=241 Identities=49% Similarity=0.834 Sum_probs=226.2
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p 390 (912)
|+||+|+||||+|..++++|+++++|++|+++|+.||++ +|++|||||||+.||||+++.+..++++++++|++|+|+|
T Consensus 1 p~pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P 80 (244)
T cd01479 1 PQPAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLP 80 (244)
T ss_pred CCCCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCC
Confidence 579999999999999999999999999999999999998 8899999999999999999988888999999999999999
Q ss_pred CCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy14673 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRS 470 (912)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~ 470 (912)
.+++||+++.||++.|+++|++|++.|..++++.+|+|+||++|..+|+..||||++|++|+||+|||+|+.|++...++
T Consensus 81 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GGkIi~f~s~~pt~GpG~l~~~~~~~~~~ 160 (244)
T cd01479 81 LPDGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGGKIIVFQSSLPTLGAGKLKSREDPKLLS 160 (244)
T ss_pred CCcceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCCEEEEEeCCCCCcCCcccccCccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987654443
Q ss_pred -CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhh
Q psy14673 471 -NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYL 549 (912)
Q Consensus 471 -~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l 549 (912)
++|+++++++++||++||.+|+++||+||+|+++.+++|+++|+.||+.|||.+++|++|+-....+.++|.+||.|++
T Consensus 161 ~~~e~~~~~p~~~fY~~la~~~~~~~isvDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~~~~~~~~d~~kl~~dl~~~l 240 (244)
T cd01479 161 TDKEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGGQVYYYPSFNFSAPNDVEKLVNELARYL 240 (244)
T ss_pred chhhhhhcCcchHHHHHHHHHHHHcCeEEEEEEccCcccChhhhhhhhhhcCceEEEECCccCCchhhHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999999999999554333578899999999999
Q ss_pred hcc
Q psy14673 550 TRK 552 (912)
Q Consensus 550 ~~~ 552 (912)
+|+
T Consensus 241 tr~ 243 (244)
T cd01479 241 TRK 243 (244)
T ss_pred ccc
Confidence 886
No 9
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=100.00 E-value=1.1e-49 Score=422.31 Aligned_cols=234 Identities=44% Similarity=0.741 Sum_probs=219.2
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~ 391 (912)
|+||+|+||||+|.+|+++|+++.+|++|+.+|+.||++++++|||||||+.||||+++....+++++|++|++|+|+|.
T Consensus 1 p~pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~~v~~dl~d~f~p~ 80 (239)
T cd01468 1 PQPPVFVFVIDVSYEAIKEGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKMYVVSDLKDVFLPL 80 (239)
T ss_pred CCCCEEEEEEEcchHhccccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeEEEeCCCccCcCCC
Confidence 68999999999999999999999999999999999997677899999999999999999876678999999999999999
Q ss_pred CCCcccchhHhHHHHHHHHHhCCccccC--CCCCCCcHHHHHHHHHHhhcCC--CCEEEEEecCCCCCCCCcccCCCCCC
Q psy14673 392 PENILVNLSECYDMIVDLLKQLPGKFKD--SLDSGSALGPALQAAFKLLQPT--GGRITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~--~~~~~~~~G~AL~~A~~ll~~~--GGrI~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
++++|+++.|+++.|.++|++|+..+.. ++++.||+|+||++|..+|+.. ||||++|++|+||.|||+|+.|++..
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGkI~~f~sg~pt~GpG~l~~~~~~~ 160 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGRIIVFQGGLPTVGPGKLKSREDKE 160 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCceEEEEECCCCCCCCCccccCcccc
Confidence 9999999999999999999999988876 8899999999999999999998 99999999999999999999997654
Q ss_pred C-CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHH
Q psy14673 468 Q-RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (912)
Q Consensus 468 ~-~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~ 546 (912)
. ++++++++++++.+||++||.+|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+. ..+.++|.++|.
T Consensus 161 ~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~v~~y~~f~~--~~~~~~~~~~l~ 238 (239)
T cd01468 161 PIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSFQA--PNDGSKFKQDLQ 238 (239)
T ss_pred cCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhhhcCCceEEEeCCCCC--cccHHHHHHHhc
Confidence 4 3667889999999999999999999999999999999999999999999999999999999985 356789999886
Q ss_pred H
Q psy14673 547 R 547 (912)
Q Consensus 547 ~ 547 (912)
|
T Consensus 239 r 239 (239)
T cd01468 239 R 239 (239)
T ss_pred C
Confidence 4
No 10
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=100.00 E-value=1.6e-48 Score=415.41 Aligned_cols=236 Identities=42% Similarity=0.757 Sum_probs=200.3
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~ 391 (912)
|+||+|+||||+|..|+++|+++.++++|+++|+.||.+++++|||||||+.||||+++.+...+++++++|++|+|+|.
T Consensus 1 P~pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~~v~~dl~~~~~p~ 80 (243)
T PF04811_consen 1 PQPPVYVFVIDVSYEAVQSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQMIVVSDLDDPFIPL 80 (243)
T ss_dssp -S--EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEEEEEHHTTSHHSST
T ss_pred CCCCEEEEEEECchhhhhccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcccchHHHhhcccCC
Confidence 68999999999999999999999999999999999997778899999999999999999887789999999999999999
Q ss_pred CCCcccchhHhHHHHHHHHHhCCccccCC--CCCCCcHHHHHHHHHHhhc--CCCCEEEEEecCCCCCCC-CcccCCCCC
Q psy14673 392 PENILVNLSECYDMIVDLLKQLPGKFKDS--LDSGSALGPALQAAFKLLQ--PTGGRITIFQTCLPNRGP-GALQSRENP 466 (912)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~--~~~~~~~G~AL~~A~~ll~--~~GGrI~~f~~g~pt~Gp-G~l~~~~~~ 466 (912)
+++||+++.|+++.|+++|++|+..|+.. +++.||+|+||++|..+|+ ..||||++|++|+||.|| |+|..+++.
T Consensus 81 ~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gGkI~~F~s~~pt~G~Gg~l~~~~~~ 160 (243)
T PF04811_consen 81 PDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGGKILVFTSGPPTYGPGGSLKKREDS 160 (243)
T ss_dssp SSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-EEEEEEESS---SSSTTSS-SBTTS
T ss_pred cccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCCEEEEEeccCCCCCCCceecccccc
Confidence 99999999999999999999999888766 8899999999999999999 899999999999999999 677776655
Q ss_pred CCCC-CCC-CCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHH
Q psy14673 467 NQRS-NDD-PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM 544 (912)
Q Consensus 467 ~~~~-~~~-~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~ 544 (912)
.... .++ ..+++++.+||++||.+|+++||+||+|+++.+++|+++|+.||+.|||.+++|++|+. +.+.++|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~~~~l~tl~~l~~~TGG~l~~y~~f~~--~~~~~~l~~d 238 (243)
T PF04811_consen 161 SHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSDYVDLATLGPLARYTGGSLYYYPNFNA--ERDGEKLRQD 238 (243)
T ss_dssp CCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS--SHHHHTHHHHCTT-EEEEETTTTC--HHHHHHHHHH
T ss_pred cccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCCCCCcHhHHHHHHhCceeEEEeCCCCC--chhHHHHHHH
Confidence 4322 344 46788889999999999999999999999999999999999999999999999999995 5778999999
Q ss_pred HHHhh
Q psy14673 545 FSRYL 549 (912)
Q Consensus 545 l~~~l 549 (912)
|.|++
T Consensus 239 l~r~~ 243 (243)
T PF04811_consen 239 LKRLV 243 (243)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99864
No 11
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=100.00 E-value=3e-46 Score=398.13 Aligned_cols=224 Identities=24% Similarity=0.333 Sum_probs=192.6
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCC---------------CCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ---------------TQP 376 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~---------------~~~ 376 (912)
|.||+|+||||+|..+++ ++.++++|+.+|+.||+++ +|||||||++||||||+... ++.
T Consensus 1 p~pp~~vFviDvs~~~~e---l~~l~~sl~~~L~~lP~~a--~VGlITfd~~V~~~~L~~~~~~~~~vf~g~~~~~~~~~ 75 (267)
T cd01478 1 TSPPVFLFVVDTCMDEEE---LDALKESLIMSLSLLPPNA--LVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQI 75 (267)
T ss_pred CCCCEEEEEEECccCHHH---HHHHHHHHHHHHHhCCCCC--EEEEEEECCEEEEEEcCCCcCceeeeccCCccCCHHHH
Confidence 579999999999999888 8899999999999999887 99999999999999998531 011
Q ss_pred c-ee------------eccCccccCCCCC-CCcccchhHhHHHHHHHHHhCCcc-c--cCCCCCCCcHHHHHHHHHHhhc
Q psy14673 377 S-QM------------ILTDIDDIFLPSP-ENILVNLSECYDMIVDLLKQLPGK-F--KDSLDSGSALGPALQAAFKLLQ 439 (912)
Q Consensus 377 ~-~~------------vv~dl~d~f~p~~-~~~lv~l~e~~~~i~~lL~~L~~~-~--~~~~~~~~~~G~AL~~A~~ll~ 439 (912)
+ ++ +.+|++|+|.|.+ ++||++++||++.|+++|++|+.. | ..++++.||+|+||++|..+|+
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~flvpl~e~~~~i~~lLe~L~~~~~~~~~~~r~~r~~G~Al~~A~~ll~ 155 (267)
T cd01478 76 QDMLGLGGPAMRPSASQHPGAGNPLPSAAASRFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLE 155 (267)
T ss_pred HHHhccccccccccccCcCCccccccccccccEEEEHHHHHHHHHHHHHhCcccccccCCCCCCCCchHHHHHHHHHHHH
Confidence 1 11 2234678888876 689999999999999999999853 3 5678999999999999999998
Q ss_pred ----CCCCEEEEEecCCCCCCCCcccCCCCCCC-CCCC----C-CCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccC
Q psy14673 440 ----PTGGRITIFQTCLPNRGPGALQSRENPNQ-RSND----D-PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 509 (912)
Q Consensus 440 ----~~GGrI~~f~~g~pt~GpG~l~~~~~~~~-~~~~----~-~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~ 509 (912)
..||||++|++|+||.|||+|+.|++... ++|. + .++++++++||++||.+|+++||+||+|+++.+++|
T Consensus 156 ~~~~~~gGki~~F~sg~pT~GpG~l~~r~~~~~~r~~~d~~~~~~~~~~~a~~fY~~la~~~~~~~vsvDlF~~s~d~vg 235 (267)
T cd01478 156 ACFPNTGARIMLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVG 235 (267)
T ss_pred hhcCCCCcEEEEEECCCCCCCCceeeccccccccccccccccchhhhhhhHHHHHHHHHHHHHhCCeEEEEEeccccccC
Confidence 58999999999999999999999874332 2432 2 368999999999999999999999999999999999
Q ss_pred hhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHH
Q psy14673 510 LATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (912)
Q Consensus 510 l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~ 546 (912)
|+||+.|++.|||.+++|++|+. +.|+..|+
T Consensus 236 laem~~l~~~TGG~v~~~~~f~~------~~f~~s~~ 266 (267)
T cd01478 236 LLEMKVLVNSTGGHVVLSDSFTT------SIFKQSFQ 266 (267)
T ss_pred HHHHHHHHHhcCcEEEEeCCcch------HHHHHHhc
Confidence 99999999999999999999996 45555553
No 12
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes part of the Sec23/24 beta-barrel domain, which is formed from approximately 180 residues from three segments of the polypeptide. The strands of the barrel are oriented roughly parallel to the membrane such that one end of the barrel forms part of the inner surface of the coat and the other end part of the membrane-distal surface. The barrel is constructed from two opposed sheets: a six-stranded beta sheet facing partly towards the zinc finger domain and partly towards the solvent, and a five-stranded beta sheet facing the helical domain.; PDB: 3EFO_B 3EG9_B 1PD0_A 1PD1_A 1M2V_B 1PCX_A 3EH2_C 3EGD_A 2NUP_A 3EGX_A ....
Probab=99.83 E-value=1.1e-20 Score=170.69 Aligned_cols=85 Identities=46% Similarity=0.825 Sum_probs=76.8
Q ss_pred ccceeEEEEecCCceEEEEeeceeccC---------CCc--eeeccCCCCCeEEEEEEEecccCCCceeEEEEEEEeeec
Q psy14673 554 GFESVMRIRCTKGMSIHTFHGNFFVRS---------TDL--LALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSS 622 (912)
Q Consensus 554 g~~a~l~vr~S~gl~i~~~~G~~~~~~---------t~~--~~l~~i~~~~si~~~~~~~~~l~~~~~~~iQ~allYt~~ 622 (912)
||+|+||||||+||+|++++||++..+ .+. |++++++++++|+|+|++++++...+.+||||+++||+.
T Consensus 1 g~~~~l~vr~S~gl~v~~~~G~~~~~~~~s~~~~g~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~iQ~~~~Yt~~ 80 (96)
T PF08033_consen 1 GFNAVLRVRCSKGLKVSGVIGPCFNRSSVSDNEIGEGDTTRWKLPSLDPDTSFAFEFEIDEDLPNGSQAYIQFALLYTDS 80 (96)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSEESSTBESSECSBSSCSEEEEEEEETT--EEEEEEESSBTBTTSEEEEEEEEEEEET
T ss_pred CceEEEEEEECCCeEEEEEEcCccccccccceeeccCCccEEEecccCCCCEEEEEEEECCCCCCCCeEEEEEEEEEECC
Confidence 799999999999999999999999765 455 999999999999999999998877789999999999999
Q ss_pred CCCeEEEEEecccccc
Q psy14673 623 KGDRRIRVHTLCLPVV 638 (912)
Q Consensus 623 ~G~rriRV~T~~l~vt 638 (912)
+|+|||||+|+++|+|
T Consensus 81 ~G~r~iRV~T~~l~vt 96 (96)
T PF08033_consen 81 NGERRIRVTTLSLPVT 96 (96)
T ss_dssp TSEEEEEEEEEEEEEE
T ss_pred CCCEEEEEEeeccccC
Confidence 9999999999999986
No 13
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region, and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the all-helical domain, which forms an approximately 105-residue segment with the C-terminal 30 residues. The linker between alpha-M and alpha-N contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_B 2NUP_B 2NUT_B 3EGX_B 3EH2_C 3EH1_A 3EFO_B 3EG9_B 2QTV_A 1M2O_C ....
Probab=99.83 E-value=3.1e-20 Score=170.00 Aligned_cols=102 Identities=45% Similarity=0.698 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ccccCcccChHHHHHHHHhcCccccCCCCC
Q psy14673 650 QACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG-SLLAPSSLKLLPLYVLALLKHPAFRIGQST 728 (912)
Q Consensus 650 ~~a~~~llak~a~~~~~~~~~~~~r~~l~~~li~~l~~yr~~~~~~~~~-~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~ 728 (912)
|||++++++|++++++.++++.++|++|+++|++++++||++|+...++ +|+|||+||+||+|+++|+||++|+. .++
T Consensus 1 Qda~~~llak~ai~~~~~~~l~~~r~~l~~~~v~il~~Yr~~~~~~~~~~qLilPe~lklLPly~l~llKs~alr~-~~v 79 (103)
T PF04815_consen 1 QDAITSLLAKQAIDKALSSSLKDARESLDNRLVDILAAYRKNCASSSSSGQLILPESLKLLPLYILALLKSPALRP-TNV 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHCTTECCCTEEEEEGGGTTHHHHHHHHHTSTTTSC-STS
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhhccCCCCchhhhCCHHHHHHHHHHHHHHcchhhcC-CCC
Confidence 7999999999999999999999999999999999999999998876664 59999999999999999999999999 699
Q ss_pred ChhHHHHHHHHHcCCChhhhHhhh
Q psy14673 729 RLDDRLFAMTEMKCLPLNSLMLSI 752 (912)
Q Consensus 729 s~Der~~~~~~l~~~~~~~~~~~i 752 (912)
++|||+|.++++++++++.++.||
T Consensus 80 ~~D~R~~~~~~~~~~~~~~~~~~i 103 (103)
T PF04815_consen 80 SPDERAYAMHLLLSMPVDSLLRMI 103 (103)
T ss_dssp -HHHHHHHHHHHHHS-HHHHHHHH
T ss_pred CCcHHHHHHHHHHCCCHHHHHhhC
Confidence 999999999999999999999886
No 14
>PRK13685 hypothetical protein; Provisional
Probab=98.74 E-value=3.6e-07 Score=101.78 Aligned_cols=160 Identities=14% Similarity=0.187 Sum_probs=116.3
Q ss_pred CcEEEEEEEccHhHHhh----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 314 PAMYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
+...+||||+|.+.... ..++.++++++..++.++++. +||+|+|++..++. .
T Consensus 88 ~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~l~~~d--~vglv~Fa~~a~~~---------------------~ 144 (326)
T PRK13685 88 RAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADELTPGI--NLGLIAFAGTATVL---------------------V 144 (326)
T ss_pred CceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHhCCCCC--eEEEEEEcCceeec---------------------C
Confidence 45689999999875432 468999999999999987665 89999999875521 1
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----------CCCEEEEEecCCCCCCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----------TGGRITIFQTCLPNRGPG 458 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----------~GGrI~~f~~g~pt~GpG 458 (912)
| +.+.++.+...|+.|.. ...+++|.||..|...++. ..++|+++++|-.+.|..
T Consensus 145 p--------~t~d~~~l~~~l~~l~~------~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~ 210 (326)
T PRK13685 145 S--------PTTNREATKNAIDKLQL------ADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN 210 (326)
T ss_pred C--------CCCCHHHHHHHHHhCCC------CCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC
Confidence 1 12245677788888852 3567889999999887752 136899999998877632
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc-------------cChhhhcccccCCCceEE
Q psy14673 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY-------------VDLATLSGVSKFSSGCIH 525 (912)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~-------------~~l~~l~~l~~~TGG~v~ 525 (912)
..... . . .+.+..+.+.||.|..+.++.+. .|-..|..+++.|||..+
T Consensus 211 ~~~~~---------------~--~--~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~ 271 (326)
T PRK13685 211 PDNPR---------------G--A--YTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFY 271 (326)
T ss_pred CCCcc---------------c--H--HHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEE
Confidence 11000 0 1 24566778899999999988642 577899999999999888
Q ss_pred ecCC
Q psy14673 526 HIPL 529 (912)
Q Consensus 526 ~~~~ 529 (912)
+..+
T Consensus 272 ~~~~ 275 (326)
T PRK13685 272 TAAS 275 (326)
T ss_pred EcCC
Confidence 7654
No 15
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=98.63 E-value=8.5e-07 Score=90.29 Aligned_cols=163 Identities=15% Similarity=0.160 Sum_probs=106.9
Q ss_pred EEEEEEEccHhHHhh----chHHHHHHHHHHHHhcCCC-CCCceEEEEEE-ccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 316 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPG-DRRTSIAIITY-DSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 316 ~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~-~~~~~VglITf-d~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
-.+|+||+|....++ ..++.+++.+...++.+.. ++.-+||||+| +..-++. .
T Consensus 5 ~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~---------------------~ 63 (183)
T cd01453 5 HLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKL---------------------T 63 (183)
T ss_pred EEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEE---------------------E
Confidence 368999999875533 3688899988888765411 22238999999 4443321 1
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C-CCEEEEEecCCCCCCCCcccCCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-GGRITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-GGrI~~f~~g~pt~GpG~l~~~~~ 465 (912)
|+. ...+.+...|+.+ + .....++++.||..|...|+. . +++|++++++.-+.+|+
T Consensus 64 PlT--------~D~~~~~~~L~~~--~---~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~~~------- 123 (183)
T cd01453 64 DLT--------GNPRKHIQALKTA--R---ECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCDPG------- 123 (183)
T ss_pred CCC--------CCHHHHHHHhhcc--c---CCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCChh-------
Confidence 221 1112344445544 1 123458999999999999964 2 35788887763222111
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHH
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMF 545 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l 545 (912)
-+.++++.+.+.||.|+++.++. ++..|..+|+.|||+.|...+ .+.|...+
T Consensus 124 -----------------~~~~~~~~l~~~~I~v~~IgiG~---~~~~L~~ia~~tgG~~~~~~~--------~~~l~~~~ 175 (183)
T cd01453 124 -----------------NIYETIDKLKKENIRVSVIGLSA---EMHICKEICKATNGTYKVILD--------ETHLKELL 175 (183)
T ss_pred -----------------hHHHHHHHHHHcCcEEEEEEech---HHHHHHHHHHHhCCeeEeeCC--------HHHHHHHH
Confidence 12567888999999999999864 467899999999999987543 24565555
Q ss_pred HH
Q psy14673 546 SR 547 (912)
Q Consensus 546 ~~ 547 (912)
.+
T Consensus 176 ~~ 177 (183)
T cd01453 176 LE 177 (183)
T ss_pred Hh
Confidence 44
No 16
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.56 E-value=1.7e-06 Score=86.83 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=112.4
Q ss_pred EEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy14673 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (912)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~ 395 (912)
.++||||+|...... -++.+++++...+..++.+. +||+|+|++..+.+- + +.+
T Consensus 2 ~~~~vlD~S~SM~~~-~~~~~k~a~~~~~~~l~~~~--~v~li~f~~~~~~~~--------------~------~~~--- 55 (170)
T cd01465 2 NLVFVIDRSGSMDGP-KLPLVKSALKLLVDQLRPDD--RLAIVTYDGAAETVL--------------P------ATP--- 55 (170)
T ss_pred cEEEEEECCCCCCCh-hHHHHHHHHHHHHHhCCCCC--EEEEEEecCCccEEe--------------c------Ccc---
Confidence 378999999865433 37888899999999987665 899999998654320 0 000
Q ss_pred ccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---C--CEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy14673 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---G--GRITIFQTCLPNRGPGALQSRENPNQRS 470 (912)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---G--GrI~~f~~g~pt~GpG~l~~~~~~~~~~ 470 (912)
...++.+...|+.+. ....+.++.||..|...++.. + .+|++|++|.++.|+..
T Consensus 56 ----~~~~~~l~~~l~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~~~----------- 114 (170)
T cd01465 56 ----VRDKAAILAAIDRLT------AGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGETD----------- 114 (170)
T ss_pred ----cchHHHHHHHHHcCC------CCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCCCC-----------
Confidence 012344555566653 245578999999999888641 2 57999999998876421
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCC
Q psy14673 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (912)
Q Consensus 471 ~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f 530 (912)
.+-+.++...+.+.+|.|+.|.++ ...+...|..++..++|..++.++.
T Consensus 115 ----------~~~~~~~~~~~~~~~v~i~~i~~g-~~~~~~~l~~ia~~~~g~~~~~~~~ 163 (170)
T cd01465 115 ----------PDELARLVAQKRESGITLSTLGFG-DNYNEDLMEAIADAGNGNTAYIDNL 163 (170)
T ss_pred ----------HHHHHHHHHHhhcCCeEEEEEEeC-CCcCHHHHHHHHhcCCceEEEeCCH
Confidence 112345556667889999999998 6789999999999999998877653
No 17
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.55 E-value=2e-06 Score=87.34 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=105.6
Q ss_pred cEEEEEEEccHhHHhh-----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 315 AMYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 315 p~~vFvID~s~~a~~~-----g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
.-++||||+|...... ..++.++..+...+...+++ +||+|+|++.+++. .
T Consensus 3 ~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~~~~~---~v~lv~f~~~~~~~---------------------~ 58 (180)
T cd01467 3 RDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRREND---RIGLVVFAGAAFTQ---------------------A 58 (180)
T ss_pred ceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHhCCCC---eEEEEEEcCCeeec---------------------c
Confidence 3478999998764321 13667777777777766543 89999998876431 1
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENP 466 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~ 466 (912)
|. ...+..+..+|+.|... .....+.++.||..|..++.. ....|+++++|.++.|.-.
T Consensus 59 ~~--------~~~~~~~~~~l~~l~~~---~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~g~~~------- 120 (180)
T cd01467 59 PL--------TLDRESLKELLEDIKIG---LAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNAGEID------- 120 (180)
T ss_pred CC--------CccHHHHHHHHHHhhhc---ccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCCCCC-------
Confidence 11 11234455666666421 124557899999999998864 2357999999987764200
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC----------ccChhhhcccccCCCceEEecCC
Q psy14673 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ----------YVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 467 ~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~----------~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
..+.+..+.+.||.|+.+.+... ..|...|..|++.|||.+++..+
T Consensus 121 -----------------~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~~ 176 (180)
T cd01467 121 -----------------PATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRALD 176 (180)
T ss_pred -----------------HHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEecC
Confidence 12334456678999999988862 46788899999999999998753
No 18
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=98.54 E-value=3.3e-06 Score=85.65 Aligned_cols=159 Identities=19% Similarity=0.250 Sum_probs=109.8
Q ss_pred EEEEEEEccHhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy14673 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (912)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~-V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~ 393 (912)
.++||||+|.+.....-++.++.++...+.. +..+. +||+|+|++. .++. +|..
T Consensus 2 ~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d--~v~lv~F~~~~~~~~---------------------~~~t- 57 (178)
T cd01451 2 LVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRD--KVALIAFRGTEAEVL---------------------LPPT- 57 (178)
T ss_pred eEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEECCCCceEE---------------------eCCC-
Confidence 3689999998654322578888888887754 34444 8999999864 2211 1110
Q ss_pred CcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhc----CCC--CEEEEEecCCCCCCCCcccCCCCCC
Q psy14673 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ----PTG--GRITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~----~~G--GrI~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
..+..+...|+.++ ....++++.||..|...++ ..+ ..|+++++|.++.|....
T Consensus 58 -------~~~~~~~~~l~~l~------~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~~~------- 117 (178)
T cd01451 58 -------RSVELAKRRLARLP------TGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPDPT------- 117 (178)
T ss_pred -------CCHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCCch-------
Confidence 11233445666664 2466899999999999882 122 579999999988863210
Q ss_pred CCCCCCCCCCCchHHHH-HHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCC
Q psy14673 468 QRSNDDPPHMNPATDFY-KKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 532 (912)
Q Consensus 468 ~~~~~~~~~~~~~~~fY-~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~ 532 (912)
..- .+++.++.+.||.|..+.+..+..+-..|..|++.|||..++.++.+.
T Consensus 118 --------------~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 118 --------------ADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred --------------hHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 111 567788889999887777666667888899999999999999987663
No 19
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.52 E-value=1.5e-06 Score=86.15 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=104.5
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcc
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 396 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~l 396 (912)
.+||||+|.+.. ..-++.++++|...++.|+++. +||||+|++..+.+- . +.+.
T Consensus 3 v~~vlD~S~SM~-~~rl~~ak~a~~~l~~~l~~~~--~~~li~F~~~~~~~~--~----------------~~~~----- 56 (155)
T cd01466 3 LVAVLDVSGSMA-GDKLQLVKHALRFVISSLGDAD--RLSIVTFSTSAKRLS--P----------------LRRM----- 56 (155)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHHHHhCCCcc--eEEEEEecCCccccC--C----------------Cccc-----
Confidence 579999987643 2357888999999999998766 899999998754310 0 0000
Q ss_pred cchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-----CCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy14673 397 VNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPNRGPGALQSRENPNQRSN 471 (912)
Q Consensus 397 v~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~ 471 (912)
-...+..+.++++.+. ....++++.||..|..+++.. ...|+++++|.++.|...
T Consensus 57 --~~~~~~~~~~~i~~~~------~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~~~~~------------ 116 (155)
T cd01466 57 --TAKGKRSAKRVVDGLQ------AGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNHGAVV------------ 116 (155)
T ss_pred --CHHHHHHHHHHHHhcc------CCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCcchhh------------
Confidence 0123455666777663 356789999999999998642 257999999988776100
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEec
Q psy14673 472 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 527 (912)
Q Consensus 472 ~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~ 527 (912)
.++.+.+|.|..+.++. ..|..+|..++..|||+.++.
T Consensus 117 -----------------~~~~~~~v~v~~igig~-~~~~~~l~~iA~~t~G~~~~~ 154 (155)
T cd01466 117 -----------------LRADNAPIPIHTFGLGA-SHDPALLAFIAEITGGTFSYV 154 (155)
T ss_pred -----------------hcccCCCceEEEEecCC-CCCHHHHHHHHhccCceEEEe
Confidence 01234678888888764 478899999999999998874
No 20
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.51 E-value=3.2e-06 Score=86.75 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=109.1
Q ss_pred CCCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy14673 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (912)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p 390 (912)
...|-..+||||+|..... .-++.++++++..|+.++++. +||||+|++.++.+--..
T Consensus 10 ~~~p~~vv~llD~SgSM~~-~~l~~ak~~~~~ll~~l~~~d--~v~lv~F~~~~~~~~~~~------------------- 67 (190)
T cd01463 10 ATSPKDIVILLDVSGSMTG-QRLHLAKQTVSSILDTLSDND--FFNIITFSNEVNPVVPCF------------------- 67 (190)
T ss_pred ccCCceEEEEEECCCCCCc-HHHHHHHHHHHHHHHhCCCCC--EEEEEEeCCCeeEEeeec-------------------
Confidence 3567889999999986432 347889999999999998776 899999999877531000
Q ss_pred CCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C-------C--CEEEEEecCCCCCCCC
Q psy14673 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-------G--GRITIFQTCLPNRGPG 458 (912)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-------G--GrI~~f~~g~pt~GpG 458 (912)
...++....+.++.+...|+.|.. ...++++.||..|...+.. . + ..|+++++|.++.+.
T Consensus 68 -~~~~~~~~~~~~~~~~~~l~~l~~------~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~- 139 (190)
T cd01463 68 -NDTLVQATTSNKKVLKEALDMLEA------KGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYK- 139 (190)
T ss_pred -ccceEecCHHHHHHHHHHHhhCCC------CCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHh-
Confidence 001111112344555566666642 3457899999999988864 1 1 368899999876421
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHH-HHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCC
Q psy14673 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIAL-ECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~-~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
+....+.. ...+.+|.|..|.++.+..|...|..|+..+||..++.++
T Consensus 140 -----------------------~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~~~~G~~~~i~~ 188 (190)
T cd01463 140 -----------------------EIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMACENKGYYSHIQS 188 (190)
T ss_pred -----------------------HHHHHhcccccCCCcEEEEEEecCCccccchHHHHHHhhcCCeEEEccc
Confidence 11111111 1112246666666666656899999999999999998765
No 21
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.51 E-value=2.1e-06 Score=89.34 Aligned_cols=173 Identities=15% Similarity=0.148 Sum_probs=112.9
Q ss_pred CCCCcEEEEEEEccHhHHh-----hchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcc
Q psy14673 311 PPQPAMYLFLLDVSQIAAQ-----SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 385 (912)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~-----~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~ 385 (912)
...|..++||||+|.+... ...++.+++++...++.++++. +||||+|++.++- ... .+. +++
T Consensus 17 ~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~l~~~~--~v~lv~F~~~~~~---~~~---~~~-~~p--- 84 (206)
T cd01456 17 PQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGT--RLGLWTFSGDGDN---PLD---VRV-LVP--- 84 (206)
T ss_pred cCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHhCCCCc--eEEEEEecCCCCC---Ccc---ccc-ccc---
Confidence 5678889999999987541 2368899999999999997766 8999999985431 000 000 100
Q ss_pred ccCCCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC-CEEEEEecCCCCCCCCcccCCC
Q psy14673 386 DIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-GRITIFQTCLPNRGPGALQSRE 464 (912)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-GrI~~f~~g~pt~GpG~l~~~~ 464 (912)
..|.....--.....++.+.+.|+.|. .....+.++.||..|..++.... ..|+++++|.++.|...
T Consensus 85 --~~~~~~~~~~~~~~~~~~l~~~i~~i~-----~~~G~T~l~~aL~~a~~~l~~~~~~~iillTDG~~~~~~~~----- 152 (206)
T cd01456 85 --KGCLTAPVNGFPSAQRSALDAALNSLQ-----TPTGWTPLAAALAEAAAYVDPGRVNVVVLITDGEDTCGPDP----- 152 (206)
T ss_pred --ccccccccCCCCcccHHHHHHHHHhhc-----CCCCcChHHHHHHHHHHHhCCCCcceEEEEcCCCccCCCCH-----
Confidence 001100000000124566777777775 13457899999999999996322 68999999988765310
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHH-hhCCcEEEEEEecCCccChhhhcccccCCCceE
Q psy14673 465 NPNQRSNDDPPHMNPATDFYKKIALEC-TSFYIAVDLFILNSQYVDLATLSGVSKFSSGCI 524 (912)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~fY~~La~~~-~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v 524 (912)
. +..++++... ...+|.|+++.+..+ .|...|..+++.|||..
T Consensus 153 ---------------~-~~~~~~~~~~~~~~~i~i~~igiG~~-~~~~~l~~iA~~tgG~~ 196 (206)
T cd01456 153 ---------------C-EVARELAKRRTPAPPIKVNVIDFGGD-ADRAELEAIAEATGGTY 196 (206)
T ss_pred ---------------H-HHHHHHHHhcCCCCCceEEEEEecCc-ccHHHHHHHHHhcCCeE
Confidence 0 1112222211 225899999998765 77899999999999988
No 22
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=98.50 E-value=1e-05 Score=98.48 Aligned_cols=167 Identities=16% Similarity=0.166 Sum_probs=110.7
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHH-hcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL-KSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L-~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
+...+||||+|........+..++++++..| +.++.+. +||||+|++..++.. . +.+..
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~D--rVGLVtFsssA~vl~---p---------------Lt~It 363 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGS--WVGMVTFDSAAYIKN---E---------------LIQIT 363 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCC--EEEEEEECCceeEee---c---------------cccCC
Confidence 4568999999987543345777888888766 4456555 999999999866421 0 11111
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCC
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
. ...++.|...|.. .....+++|.||..|..+|+. .++.|+++++|-.+.+
T Consensus 364 s------~~dr~aL~~~L~~-------~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~~----------- 419 (863)
T TIGR00868 364 S------SAERDALTANLPT-------AASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNTI----------- 419 (863)
T ss_pred c------HHHHHHHHHhhcc-------ccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCCH-----------
Confidence 0 1123334333321 134679999999999999975 3578999988864421
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHH
Q psy14673 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSR 547 (912)
Q Consensus 468 ~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~ 547 (912)
..++..+.+.||.|..|.++.+. -..|..||+.|||..++..+- .+...|...|.+
T Consensus 420 -----------------~~~l~~lk~~gVtI~TIg~G~da--d~~L~~IA~~TGG~~f~asd~-----~dl~~L~dAF~~ 475 (863)
T TIGR00868 420 -----------------SSCFEEVKQSGAIIHTIALGPSA--AKELEELSDMTGGLRFYASDQ-----ADNNGLIDAFGA 475 (863)
T ss_pred -----------------HHHHHHHHHcCCEEEEEEeCCCh--HHHHHHHHHhcCCEEEEeCCH-----HHHHHHHHHHHH
Confidence 12445566789999999988764 245899999999999988641 122445555554
Q ss_pred h
Q psy14673 548 Y 548 (912)
Q Consensus 548 ~ 548 (912)
+
T Consensus 476 i 476 (863)
T TIGR00868 476 L 476 (863)
T ss_pred H
Confidence 4
No 23
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=98.30 E-value=1.6e-05 Score=80.42 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=97.0
Q ss_pred EEEEEEEccHhHHhh----chHHHHHHHHHHHH----hcCCCCCCceEEEEEEcc-EEEEEEcCCCCCCCceeeccCccc
Q psy14673 316 MYLFLLDVSQIAAQS----GYLYTVCEVLLNQL----KSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDD 386 (912)
Q Consensus 316 ~~vFvID~s~~a~~~----g~l~~~~~si~~~L----~~lp~~~~~~VglITfd~-~V~~y~l~~~~~~~~~~vv~dl~d 386 (912)
+.+++||+|....+. ..|++.++++...+ +..|++ +||||+|.. ..++
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~---~vGlv~fag~~a~v-------------------- 61 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPEN---NVGLMTMAGNSPEV-------------------- 61 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCc---cEEEEEecCCceEE--------------------
Confidence 568999999876542 36888888877664 666655 899999976 3322
Q ss_pred cCCCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCccc
Q psy14673 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQ 461 (912)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~f~~g~pt~GpG~l~ 461 (912)
++++......+...|+.+. ......+|.||..|...|+. ...||++|++++-+.=+|
T Consensus 62 ---------~~plT~D~~~~~~~L~~i~------~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~--- 123 (187)
T cd01452 62 ---------LVTLTNDQGKILSKLHDVQ------PKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEK--- 123 (187)
T ss_pred ---------EECCCCCHHHHHHHHHhCC------CCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHH---
Confidence 1112223455667777664 23556799999999999964 235999999876433111
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCC
Q psy14673 462 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 520 (912)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T 520 (912)
+ ..++++++.++||.||++.++...-+..-|..+++..
T Consensus 124 --------------------~-i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 124 --------------------D-LVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred --------------------H-HHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 2 2478999999999999999876655555555544444
No 24
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.26 E-value=2.9e-05 Score=77.59 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=96.7
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~ 395 (912)
.+||||+|.... ..-++.++++++..+..+... .+.+||||+|++.+++.- . +.+
T Consensus 3 vv~vlD~SgSm~-~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~~~~-~----------~~~------------ 58 (164)
T cd01472 3 IVFLVDGSESIG-LSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPRTEF-Y----------LNT------------ 58 (164)
T ss_pred EEEEEeCCCCCC-HHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCceeEEE-e----------cCC------------
Confidence 589999987543 345788888888888777532 345999999998766421 0 000
Q ss_pred ccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC--------CCEEEEEecCCCCCCCCcccCCCCCC
Q psy14673 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT--------GGRITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--------GGrI~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
...++.+.+.|+.|+.. ...+.+|.||..|...+... ...|+++++|.++.+.
T Consensus 59 ----~~~~~~~~~~l~~l~~~-----~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~~~---------- 119 (164)
T cd01472 59 ----YRSKDDVLEAVKNLRYI-----GGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQDDV---------- 119 (164)
T ss_pred ----CCCHHHHHHHHHhCcCC-----CCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCchH----------
Confidence 01234455667777531 45578999999999988641 2357777777433210
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCc-eEEecCC
Q psy14673 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPL 529 (912)
Q Consensus 468 ~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~~~~ 529 (912)
...+..+.+.||.|-.+.+.. .|...|..++..++| .++.+.+
T Consensus 120 -----------------~~~~~~l~~~gv~i~~ig~g~--~~~~~L~~ia~~~~~~~~~~~~~ 163 (164)
T cd01472 120 -----------------EEPAVELKQAGIEVFAVGVKN--ADEEELKQIASDPKELYVFNVAD 163 (164)
T ss_pred -----------------HHHHHHHHHCCCEEEEEECCc--CCHHHHHHHHCCCchheEEeccC
Confidence 122334556777655555444 499999999999987 5555443
No 25
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.25 E-value=0.00065 Score=82.19 Aligned_cols=285 Identities=15% Similarity=0.152 Sum_probs=160.9
Q ss_pred CCCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy14673 311 PPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (912)
Q Consensus 311 ~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p 390 (912)
++.|.-++||||+|.+.. .+-++.+++++..+|..|++++ +|+||+|++.++.+. ... .+
T Consensus 268 ~~~p~~vvfvlD~SgSM~-g~~i~~ak~al~~~l~~L~~~d--~~~ii~F~~~~~~~~--~~~---------------~~ 327 (596)
T TIGR03788 268 QVLPRELVFVIDTSGSMA-GESIEQAKSALLLALDQLRPGD--RFNIIQFDSDVTLLF--PVP---------------VP 327 (596)
T ss_pred cCCCceEEEEEECCCCCC-CccHHHHHHHHHHHHHhCCCCC--EEEEEEECCcceEec--ccc---------------cc
Confidence 456778999999998643 2347788999999999998877 999999999987541 100 00
Q ss_pred CCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC--C--CEEEEEecCCCCCCCCcccCCCCC
Q psy14673 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT--G--GRITIFQTCLPNRGPGALQSRENP 466 (912)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G--GrI~~f~~g~pt~GpG~l~~~~~~ 466 (912)
.. .+....+...|+.|. ....+.+..||..|+...... + ..|+++++|..+-
T Consensus 328 ~~-------~~~~~~a~~~i~~l~------a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~----------- 383 (596)
T TIGR03788 328 AT-------AHNLARARQFVAGLQ------ADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN----------- 383 (596)
T ss_pred CC-------HHHHHHHHHHHhhCC------CCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC-----------
Confidence 00 122334445566653 236688999999999875432 1 3699999985210
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHH
Q psy14673 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFS 546 (912)
Q Consensus 467 ~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~ 546 (912)
.....+.+. ....++.|..|.++.+ ++-..|..|++.+||..++..+-+ ...+.+.+.+.
T Consensus 384 -------------~~~~~~~~~--~~~~~~ri~tvGiG~~-~n~~lL~~lA~~g~G~~~~i~~~~----~~~~~~~~~l~ 443 (596)
T TIGR03788 384 -------------EDALFQLIR--TKLGDSRLFTVGIGSA-PNSYFMRKAAQFGRGSFTFIGSTD----EVQRKMSQLFA 443 (596)
T ss_pred -------------HHHHHHHHH--HhcCCceEEEEEeCCC-cCHHHHHHHHHcCCCEEEECCCHH----HHHHHHHHHHH
Confidence 012223332 2234567777776654 677889999999999877654311 12234444444
Q ss_pred HhhhcccccceeEEEEecCCceEEEEeeceeccCCCceeeccCCCCCeEEEEEEEecccCCCceeEEEEEEEeeecCCCe
Q psy14673 547 RYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDR 626 (912)
Q Consensus 547 ~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~~~~~t~~~~l~~i~~~~si~~~~~~~~~l~~~~~~~iQ~allYt~~~G~r 626 (912)
+ +.....-+..+++.... +..++ -..++.+-....+.+.-++... ...+ .+.....++..
T Consensus 444 ~-~~~p~l~~v~v~~~~~~---~~~v~---------P~~~p~L~~g~~l~v~g~~~~~---~~~i----~v~g~~~~~~~ 503 (596)
T TIGR03788 444 K-LEQPALTDIALTFDNGN---AADVY---------PSPIPDLYRGEPLQIAIKLQQA---AGEL----QLTGRTGSQPW 503 (596)
T ss_pred h-hcCeEEEEEEEEEcCCc---cceec---------cCCCccccCCCEEEEEEEecCC---CCeE----EEEEEcCCceE
Confidence 4 33444455555553211 22221 1235556666667776664321 1222 22333223332
Q ss_pred EEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHh
Q psy14673 627 RIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSL-SDAREAFLNVVCDVLSTYKMT 691 (912)
Q Consensus 627 riRV~T~~l~vt~~~~~v~~~~D~~a~~~llak~a~~~~~~~~~-~~~r~~l~~~li~~l~~yr~~ 691 (912)
. ..+++... .+-..+-.+.||.-+...+.... ..-.+.+.+.++++-.+|+-.
T Consensus 504 ~-----~~~~~~~~-------~~~~~l~~lwA~~~I~~L~~~~~~~~~~~~~~~~Ii~Lsl~y~lv 557 (596)
T TIGR03788 504 S-----QQLDLDSA-------APGKGIDKLWARRKIDSLEDSLRYGANEEKVKDQVTALALNHHLV 557 (596)
T ss_pred E-----EEEecCCC-------CCcchHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHhCCC
Confidence 2 22222211 12334666777777666542111 011244667788888888754
No 26
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=98.24 E-value=2.7e-05 Score=79.46 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=92.4
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
+.-.+||||+|..... .+ ...++.++..++.+.. ++.+||+|+|++..++. .+..
T Consensus 4 ~~Dvv~llD~SgSm~~-~~-~~~~~~~~~l~~~~~~-~~~rvglv~Fs~~~~~~~~l~~--------------------- 59 (185)
T cd01474 4 HFDLYFVLDKSGSVAA-NW-IEIYDFVEQLVDRFNS-PGLRFSFITFSTRATKILPLTD--------------------- 59 (185)
T ss_pred ceeEEEEEeCcCchhh-hH-HHHHHHHHHHHHHcCC-CCcEEEEEEecCCceEEEeccc---------------------
Confidence 4457899999976432 22 2334556666655432 23699999999875431 1110
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh--cCCCCE-----EEEEecCCCCCCCCcccCCCC
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL--QPTGGR-----ITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll--~~~GGr-----I~~f~~g~pt~GpG~l~~~~~ 465 (912)
..+.+...++.|.... ....+++|.||..|...+ ...||| |+++++|.++-..+. +
T Consensus 60 ---------~~~~~~~~l~~l~~~~---~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~~~-----~ 122 (185)
T cd01474 60 ---------DSSAIIKGLEVLKKVT---PSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHK-----Y 122 (185)
T ss_pred ---------cHHHHHHHHHHHhccC---CCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCCCc-----c
Confidence 0112334444444321 236799999999999877 334443 888888876421100 0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEE-ecCCCC
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIH-HIPLYS 531 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~-~~~~f~ 531 (912)
-...+.++.+.||.|-.+.. ...+..+|..++..++ .+| ...+|.
T Consensus 123 ------------------~~~~a~~l~~~gv~i~~vgv--~~~~~~~L~~iA~~~~-~~f~~~~~~~ 168 (185)
T cd01474 123 ------------------PEHEAKLSRKLGAIVYCVGV--TDFLKSQLINIADSKE-YVFPVTSGFQ 168 (185)
T ss_pred ------------------hHHHHHHHHHcCCEEEEEee--chhhHHHHHHHhCCCC-eeEecCccHH
Confidence 02334566678886665555 5678899999998775 444 334554
No 27
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.21 E-value=3.3e-05 Score=79.76 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=102.3
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
++||||+|..... .-++.+++++...++.|+. ..+.+||+|+|++.++.. .+... .
T Consensus 3 i~~vlD~SgSM~~-~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~~~~~~~~~------------------~--- 60 (198)
T cd01470 3 IYIALDASDSIGE-EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPKEIVSIRDF------------------N--- 60 (198)
T ss_pred EEEEEECCCCccH-HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCceEEEecccC------------------C---
Confidence 7899999976433 3478889999999988864 224599999999886542 22110 0
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---------CC--CEEEEEecCCCCCCCCcccCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---------TG--GRITIFQTCLPNRGPGALQSR 463 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---------~G--GrI~~f~~g~pt~GpG~l~~~ 463 (912)
...+..+...|+.+.... ......+.++.||..|...+.. .+ -.|++|++|.+|.|... .
T Consensus 61 -----~~~~~~~~~~l~~~~~~~-~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~---~ 131 (198)
T cd01470 61 -----SNDADDVIKRLEDFNYDD-HGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSP---L 131 (198)
T ss_pred -----CCCHHHHHHHHHhCCccc-ccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCCh---h
Confidence 011234445566654211 1123567899999988876521 11 24789999999876211 0
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHH------HhhCCcEEEEEEecCCccChhhhcccccCCCc--eEEecCCCC
Q psy14673 464 ENPNQRSNDDPPHMNPATDFYKKIALE------CTSFYIAVDLFILNSQYVDLATLSGVSKFSSG--CIHHIPLYS 531 (912)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~fY~~La~~------~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG--~v~~~~~f~ 531 (912)
.+.+.++++... +...+|.|..|.+.. ..|-.+|..++..||| .+|...+|.
T Consensus 132 ---------------~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~-~~~~~~L~~iA~~~~g~~~~f~~~~~~ 191 (198)
T cd01470 132 ---------------PTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGD-DVNKEELNDLASKKDNERHFFKLKDYE 191 (198)
T ss_pred ---------------HHHHHHHHHHhcccccccchhcceeEEEEecCc-ccCHHHHHHHhcCCCCCceEEEeCCHH
Confidence 111222332111 234466665555543 4789999999999999 466666543
No 28
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.17 E-value=1.8e-05 Score=79.00 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=100.6
Q ss_pred EEEEEEccHhHHhh----chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy14673 317 YLFLLDVSQIAAQS----GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 317 ~vFvID~s~~a~~~----g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
++||||+|...... ..++.+++++...++.+|++ +|||++|++..++. .
T Consensus 2 vv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~l~~f~~~~~~~--------------~---------- 54 (172)
T PF13519_consen 2 VVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANLPGD---RVGLVSFSDSSRTL--------------S---------- 54 (172)
T ss_dssp EEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHHTTS---EEEEEEESTSCEEE--------------E----------
T ss_pred EEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHCCCC---EEEEEEeccccccc--------------c----------
Confidence 68999999875543 25888999999999888744 89999998753210 0
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC---CEEEEEecCCCCCCCCcccCCCCCCCC
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNRGPGALQSRENPNQR 469 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~f~~g~pt~GpG~l~~~~~~~~~ 469 (912)
++...++.+.+.++++.... ......+++.||..|..++.... ..|++|++|.++.
T Consensus 55 -----~~t~~~~~~~~~l~~~~~~~--~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~-------------- 113 (172)
T PF13519_consen 55 -----PLTSDKDELKNALNKLSPQG--MPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS-------------- 113 (172)
T ss_dssp -----EEESSHHHHHHHHHTHHHHG----SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------
T ss_pred -----cccccHHHHHHHhhcccccc--cCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------
Confidence 11123445555566554211 23456899999999999997643 4667777764330
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEec
Q psy14673 470 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 527 (912)
Q Consensus 470 ~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~ 527 (912)
+ ..+.+..+.+.+|.|.++.+..+...-..|..+++.|||..+..
T Consensus 114 ------------~-~~~~~~~~~~~~i~i~~v~~~~~~~~~~~l~~la~~tgG~~~~~ 158 (172)
T PF13519_consen 114 ------------S-DIEAAKALKQQGITIYTVGIGSDSDANEFLQRLAEATGGRYFHV 158 (172)
T ss_dssp ------------H-HHHHHHHHHCTTEEEEEEEES-TT-EHHHHHHHHHHTEEEEEEE
T ss_pred ------------c-hhHHHHHHHHcCCeEEEEEECCCccHHHHHHHHHHhcCCEEEEe
Confidence 0 01367778899999999999888776678999999999998887
No 29
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=98.14 E-value=0.00012 Score=80.56 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p 390 (912)
..|...+||||+|..... .+..+++++...|+. +.++. +||||+|++.+++.. +.
T Consensus 51 ~~p~~vvlvlD~SgSM~~--~~~~a~~a~~~~l~~~l~~~d--~v~lv~f~~~~~~~~--------------~~------ 106 (296)
T TIGR03436 51 DLPLTVGLVIDTSGSMRN--DLDRARAAAIRFLKTVLRPND--RVFVVTFNTRLRLLQ--------------DF------ 106 (296)
T ss_pred CCCceEEEEEECCCCchH--HHHHHHHHHHHHHHhhCCCCC--EEEEEEeCCceeEee--------------cC------
Confidence 358899999999976442 477788888888876 65544 999999998776421 00
Q ss_pred CCCCcccchhHhHHHHHHHHHhCCcccc---------CCCCCCCcHHHHHHHH-HHhhcCC-----CCE-EEEEecCCCC
Q psy14673 391 SPENILVNLSECYDMIVDLLKQLPGKFK---------DSLDSGSALGPALQAA-FKLLQPT-----GGR-ITIFQTCLPN 454 (912)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~---------~~~~~~~~~G~AL~~A-~~ll~~~-----GGr-I~~f~~g~pt 454 (912)
...++.|...|+.|..... ......++++.||..| ..++... |-| |++|++|..+
T Consensus 107 ---------t~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIllTDG~~~ 177 (296)
T TIGR03436 107 ---------TSDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIVISDGGDN 177 (296)
T ss_pred ---------CCCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEEEecCCCc
Confidence 0124455666666643110 0124567888887544 4555432 323 6666666321
Q ss_pred CCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc------------cChhhhcccccCCCc
Q psy14673 455 RGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY------------VDLATLSGVSKFSSG 522 (912)
Q Consensus 455 ~GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~------------~~l~~l~~l~~~TGG 522 (912)
. ...-++++...|.+.+|.|..+.+.... .+-..|..+|+.|||
T Consensus 178 ~------------------------~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG 233 (296)
T TIGR03436 178 R------------------------SRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGG 233 (296)
T ss_pred c------------------------hHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCC
Confidence 1 1234577888888999998888775321 245689999999999
Q ss_pred eEEec
Q psy14673 523 CIHHI 527 (912)
Q Consensus 523 ~v~~~ 527 (912)
..++.
T Consensus 234 ~~~~~ 238 (296)
T TIGR03436 234 RAFYV 238 (296)
T ss_pred eEecc
Confidence 97665
No 30
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.13 E-value=5.9e-05 Score=75.56 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=104.0
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~ 393 (912)
|.-++||+|+|.+.. ...++.++++|...+..++.+. +|++|+|++.++.+- .. +.+.
T Consensus 2 ~~~v~~vlD~S~SM~-~~~~~~~~~al~~~l~~l~~~~--~~~l~~Fs~~~~~~~--~~---------------~~~~-- 59 (171)
T cd01461 2 PKEVVFVIDTSGSMS-GTKIEQTKEALLTALKDLPPGD--YFNIIGFSDTVEEFS--PS---------------SVSA-- 59 (171)
T ss_pred CceEEEEEECCCCCC-ChhHHHHHHHHHHHHHhCCCCC--EEEEEEeCCCceeec--Cc---------------ceeC--
Confidence 566899999998653 2347888999999999998765 899999998865431 00 0000
Q ss_pred CcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCC
Q psy14673 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRS 470 (912)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~ 470 (912)
. .+....+.+.|+.+.. ...+.++.||..|...+.. ....|++|++|.++.
T Consensus 60 ----~-~~~~~~~~~~l~~~~~------~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~--------------- 113 (171)
T cd01461 60 ----T-AENVAAAIEYVNRLQA------LGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN--------------- 113 (171)
T ss_pred ----C-HHHHHHHHHHHHhcCC------CCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC---------------
Confidence 0 1112233344554431 4567899999999998864 336778888876211
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCC
Q psy14673 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 471 ~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
..+++ +.+.++.+.++.|..+.++. ..+-..|..++..|||...+..+
T Consensus 114 ---------~~~~~-~~~~~~~~~~i~i~~i~~g~-~~~~~~l~~ia~~~gG~~~~~~~ 161 (171)
T cd01461 114 ---------ESQIL-KNVREALSGRIRLFTFGIGS-DVNTYLLERLAREGRGIARRIYE 161 (171)
T ss_pred ---------HHHHH-HHHHHhcCCCceEEEEEeCC-ccCHHHHHHHHHcCCCeEEEecC
Confidence 11233 34445555578777777654 36678899999999999998865
No 31
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.00 E-value=0.00011 Score=75.05 Aligned_cols=159 Identities=12% Similarity=0.077 Sum_probs=102.1
Q ss_pred cEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-------CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcccc
Q psy14673 315 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-------DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 387 (912)
Q Consensus 315 p~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-------~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~ 387 (912)
--.+||||.|...-.+ -++.+++.++..++.+.. ....+||+|+|++..++.-
T Consensus 3 ~dvv~vlD~S~Sm~~~-~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~~~~------------------- 62 (186)
T cd01480 3 VDITFVLDSSESVGLQ-NFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQEVEA------------------- 62 (186)
T ss_pred eeEEEEEeCCCccchh-hHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCceeeE-------------------
Confidence 3478999998764433 366677777777776622 1235999999998755310
Q ss_pred CCCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccC
Q psy14673 388 FLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQS 462 (912)
Q Consensus 388 f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~f~~g~pt~GpG~l~~ 462 (912)
|+.. . ...++.+.+.|+.|.. ....+++|.||..|...+.. ....|++|++|.++.+..
T Consensus 63 --~l~~-~----~~~~~~l~~~i~~l~~-----~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~---- 126 (186)
T cd01480 63 --GFLR-D----IRNYTSLKEAVDNLEY-----IGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPD---- 126 (186)
T ss_pred --eccc-c----cCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcc----
Confidence 0000 0 0134566677777752 13468999999999998863 124677778776532210
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCC
Q psy14673 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 531 (912)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~ 531 (912)
.-..+.+.++.+.||.|-.+.... .+...|..++...+|. ++.++|.
T Consensus 127 -------------------~~~~~~~~~~~~~gi~i~~vgig~--~~~~~L~~IA~~~~~~-~~~~~~~ 173 (186)
T cd01480 127 -------------------GGIEKAVNEADHLGIKIFFVAVGS--QNEEPLSRIACDGKSA-LYRENFA 173 (186)
T ss_pred -------------------hhHHHHHHHHHHCCCEEEEEecCc--cchHHHHHHHcCCcch-hhhcchh
Confidence 012455667778888866666544 7888899999887776 6656665
No 32
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=98.00 E-value=0.0001 Score=72.84 Aligned_cols=150 Identities=25% Similarity=0.293 Sum_probs=101.4
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcc
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENIL 396 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~l 396 (912)
.+||||+|...... .+.++++|+..|+.|+++. ++.||+||+.+..|. .+ +
T Consensus 3 vvilvD~S~Sm~g~--~~~~k~al~~~l~~L~~~d--~fnii~f~~~~~~~~--~~-----------------------~ 53 (155)
T PF13768_consen 3 VVILVDTSGSMSGE--KELVKDALRAILRSLPPGD--RFNIIAFGSSVRPLF--PG-----------------------L 53 (155)
T ss_pred EEEEEeCCCCCCCc--HHHHHHHHHHHHHhCCCCC--EEEEEEeCCEeeEcc--hh-----------------------H
Confidence 68999999875432 3889999999999998877 999999999877542 11 1
Q ss_pred cchh-HhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC--CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCC
Q psy14673 397 VNLS-ECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGRITIFQTCLPNRGPGALQSRENPNQRSNDD 473 (912)
Q Consensus 397 v~l~-e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~--~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~~~ 473 (912)
++.+ +.++.....|+.+. .....+.++.||..|...+.. .--.|+++++|.++.+.
T Consensus 54 ~~~~~~~~~~a~~~I~~~~-----~~~G~t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~---------------- 112 (155)
T PF13768_consen 54 VPATEENRQEALQWIKSLE-----ANSGGTDLLAALRAALALLQRPGCVRAIILLTDGQPVSGE---------------- 112 (155)
T ss_pred HHHhHHHHHHHHHHHHHhc-----ccCCCccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCH----------------
Confidence 1111 22334444455543 126778999999999998733 34688899988874432
Q ss_pred CCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEe
Q psy14673 474 PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 526 (912)
Q Consensus 474 ~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (912)
....+.+. .+. ..+.|+.|.+.. ..+-..|..|++.|||..++
T Consensus 113 -------~~i~~~v~-~~~-~~~~i~~~~~g~-~~~~~~L~~LA~~~~G~~~f 155 (155)
T PF13768_consen 113 -------EEILDLVR-RAR-GHIRIFTFGIGS-DADADFLRELARATGGSFHF 155 (155)
T ss_pred -------HHHHHHHH-hcC-CCceEEEEEECC-hhHHHHHHHHHHcCCCEEEC
Confidence 12222222 222 457777777655 36678899999999998753
No 33
>KOG3598|consensus
Probab=97.96 E-value=6.9e-06 Score=99.36 Aligned_cols=7 Identities=43% Similarity=0.544 Sum_probs=3.8
Q ss_pred CCcccCC
Q psy14673 2 QPLVSNK 8 (912)
Q Consensus 2 ~~~~~~~ 8 (912)
||++|++
T Consensus 1951 Q~~~sqg 1957 (2220)
T KOG3598|consen 1951 QPPMSQG 1957 (2220)
T ss_pred Ccccccc
Confidence 5555554
No 34
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.93 E-value=0.00019 Score=70.80 Aligned_cols=146 Identities=20% Similarity=0.202 Sum_probs=99.1
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~ 395 (912)
++||||+|.... ...++.+++.+...+..+.. +.+.+||||+|++.....- ++.+ ..
T Consensus 3 i~~llD~S~Sm~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~~~~--------------~~~~-------~~ 60 (161)
T cd01450 3 IVFLLDGSESVG-PENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEF--------------SLND-------YK 60 (161)
T ss_pred EEEEEeCCCCcC-HHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCceEEE--------------ECCC-------CC
Confidence 579999987643 33577888888888877764 2355999999998543210 0000 00
Q ss_pred ccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC-------CEEEEEecCCCCCCCCcccCCCCCCC
Q psy14673 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-------GRITIFQTCLPNRGPGALQSRENPNQ 468 (912)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-------GrI~~f~~g~pt~GpG~l~~~~~~~~ 468 (912)
.++.+...|+.+.... + ..+.++.||..|...+.... ..|++|++|.++.+.
T Consensus 61 ------~~~~~~~~i~~~~~~~--~--~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~----------- 119 (161)
T cd01450 61 ------SKDDLLKAVKNLKYLG--G--GGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGG----------- 119 (161)
T ss_pred ------CHHHHHHHHHhcccCC--C--CCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCc-----------
Confidence 2344555566654321 1 47899999999999887532 368999999877653
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCC
Q psy14673 469 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSS 521 (912)
Q Consensus 469 ~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TG 521 (912)
-..++...+.+.+|.|..+.++. .+...|..|+..||
T Consensus 120 --------------~~~~~~~~~~~~~v~v~~i~~g~--~~~~~l~~la~~~~ 156 (161)
T cd01450 120 --------------DPKEAAAKLKDEGIKVFVVGVGP--ADEEELREIASCPS 156 (161)
T ss_pred --------------chHHHHHHHHHCCCEEEEEeccc--cCHHHHHHHhCCCC
Confidence 02456667777888888887766 78888999998883
No 35
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.90 E-value=0.00043 Score=70.12 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=101.6
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
.+|+||.|...-. .-++.+++.++..++.+..+ ..+|||+|+|++..++. .+. | .
T Consensus 3 i~fvlD~S~S~~~-~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~~~~~l~------------~---~------- 59 (177)
T cd01469 3 IVFVLDGSGSIYP-DDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFRTEFTLN------------E---Y------- 59 (177)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCceeEEEecC------------c---c-------
Confidence 5899999876332 23777888888888887653 34699999999986542 111 1 0
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh-c-CCCC------EEEEEecCCCCCCCCcccCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-Q-PTGG------RITIFQTCLPNRGPGALQSRENP 466 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~-~~GG------rI~~f~~g~pt~GpG~l~~~~~~ 466 (912)
.+++.+..+++.++.. ...+.+|.||..|...+ . ..|+ -++++++|..+.|+-
T Consensus 60 ------~~~~~~~~~i~~~~~~-----~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~-------- 120 (177)
T cd01469 60 ------RTKEEPLSLVKHISQL-----LGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPL-------- 120 (177)
T ss_pred ------CCHHHHHHHHHhCccC-----CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccc--------
Confidence 0122344556655421 23489999999998876 2 2332 478888887654320
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc---cChhhhcccccCCCc-eEEecCCCC
Q psy14673 467 NQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY---VDLATLSGVSKFSSG-CIHHIPLYS 531 (912)
Q Consensus 467 ~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~---~~l~~l~~l~~~TGG-~v~~~~~f~ 531 (912)
.+..+..+...||.|-.+....+. .+..+|..++..+++ .+|..++|+
T Consensus 121 -----------------~~~~~~~~k~~gv~v~~Vgvg~~~~~~~~~~~L~~ias~p~~~h~f~~~~~~ 172 (177)
T cd01469 121 -----------------LKDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASKPPEEHFFNVTDFA 172 (177)
T ss_pred -----------------cHHHHHHHHHCCcEEEEEEecccccccccHHHHHHHhcCCcHHhEEEecCHH
Confidence 034566677789877777776542 347889999998874 566666664
No 36
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.89 E-value=0.00028 Score=74.42 Aligned_cols=156 Identities=17% Similarity=0.223 Sum_probs=100.6
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
|.-.+||||.|...-. .-++.+++.++..++.+.-. ..++||+|+|++.+++.- ++.+.
T Consensus 2 ~~DlvfllD~S~Sm~~-~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~~~~--------------~l~~~----- 61 (224)
T cd01475 2 PTDLVFLIDSSRSVRP-ENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEF--------------PLGRF----- 61 (224)
T ss_pred CccEEEEEeCCCCCCH-HHHHHHHHHHHHHHHhcccCCCccEEEEEEecCceeEEe--------------ccccc-----
Confidence 3457999999876332 23788889999888877432 356999999999876420 01100
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhh-cC-CC--------CE-EEEEecCCCCCCCCccc
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL-QP-TG--------GR-ITIFQTCLPNRGPGALQ 461 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll-~~-~G--------Gr-I~~f~~g~pt~GpG~l~ 461 (912)
..++.|...|+.+... ...+.+|.||..|...+ .. .| -| |++|++|.++-.
T Consensus 62 --------~~~~~l~~~i~~i~~~-----~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~----- 123 (224)
T cd01475 62 --------KSKADLKRAVRRMEYL-----ETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDD----- 123 (224)
T ss_pred --------CCHHHHHHHHHhCcCC-----CCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCccc-----
Confidence 1234556667776532 24567899999998643 21 11 13 577877753210
Q ss_pred CCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCc-eEEecCCCC
Q psy14673 462 SRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIPLYS 531 (912)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~~~~f~ 531 (912)
..+.+.++.+.||.| |+......|..+|..++..+++ .++..++|+
T Consensus 124 ----------------------~~~~a~~lk~~gv~i--~~VgvG~~~~~~L~~ias~~~~~~~f~~~~~~ 170 (224)
T cd01475 124 ----------------------VSEVAAKARALGIEM--FAVGVGRADEEELREIASEPLADHVFYVEDFS 170 (224)
T ss_pred ----------------------HHHHHHHHHHCCcEE--EEEeCCcCCHHHHHHHhCCCcHhcEEEeCCHH
Confidence 245677888888755 5444445788999999987654 667766665
No 37
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=97.87 E-value=0.00026 Score=72.30 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=93.2
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEE-EEcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~-y~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
++||||+|...-....+..+++.+...++.+.. +.+.+||+|+|++..+. +.+...
T Consensus 3 v~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~~~~~l~~~---------------------- 60 (186)
T cd01471 3 LYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSP---------------------- 60 (186)
T ss_pred EEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCceEEEECCCc----------------------
Confidence 689999998755444478888888888887753 23469999999987653 222210
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-C------CEEEEEecCCCCCCCCcccCCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-G------GRITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-G------GrI~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
....++.+.++++.|... ......++++.||..|...+... | ..|+++++|.++.+..
T Consensus 61 ----~~~~~~~~~~~i~~l~~~--~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~--------- 125 (186)
T cd01471 61 ----NSTNKDLALNAIRALLSL--YYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFR--------- 125 (186)
T ss_pred ----cccchHHHHHHHHHHHhC--cCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcc---------
Confidence 001122223334433221 11245688999999999988642 2 3688888888654210
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccC
Q psy14673 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 519 (912)
Q Consensus 468 ~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (912)
. .+.+.++.+.||.|-++.+.. ..|...|..++..
T Consensus 126 ------------~----~~~a~~l~~~gv~v~~igiG~-~~d~~~l~~ia~~ 160 (186)
T cd01471 126 ------------T----LKEARKLRERGVIIAVLGVGQ-GVNHEENRSLVGC 160 (186)
T ss_pred ------------h----hHHHHHHHHCCCEEEEEEeeh-hhCHHHHHHhcCC
Confidence 0 134566677788777666643 4777777776654
No 38
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.86 E-value=0.0003 Score=72.12 Aligned_cols=152 Identities=23% Similarity=0.289 Sum_probs=91.2
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-------CCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCcc
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-------DRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDID 385 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-------~~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~ 385 (912)
+.=.|||||.|...-. +-++.+++.|+..+..+.. ...+|||+|+|++..++. .|. |..
T Consensus 19 ~~DivfvlD~S~Sm~~-~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~~~~~L~------------d~~ 85 (193)
T cd01477 19 WLDIVFVVDNSKGMTQ-GGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNATVVADLN------------DLQ 85 (193)
T ss_pred eeeEEEEEeCCCCcch-hhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceEEEEecc------------ccc
Confidence 5568999999986432 2377788888887766543 224699999999987652 221 100
Q ss_pred ccCCCCCCCcccchhHhHHHHHHHHHh-CCccccCCCCCCCcHHHHHHHHHHhhcCC--C-----CE-EEEEecCCCCCC
Q psy14673 386 DIFLPSPENILVNLSECYDMIVDLLKQ-LPGKFKDSLDSGSALGPALQAAFKLLQPT--G-----GR-ITIFQTCLPNRG 456 (912)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~-L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G-----Gr-I~~f~~g~pt~G 456 (912)
..+.+.+.|+. +... .....+.+|.||..|..++... | .| ||++++|.-+.|
T Consensus 86 ----------------~~~~~~~ai~~~~~~~---~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~ 146 (193)
T cd01477 86 ----------------SFDDLYSQIQGSLTDV---SSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEG 146 (193)
T ss_pred ----------------CHHHHHHHHHHHhhcc---ccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCC
Confidence 12222333332 1111 1223688999999999999642 3 36 666666632211
Q ss_pred CCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCc
Q psy14673 457 PGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 522 (912)
Q Consensus 457 pG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG 522 (912)
-+ . ....|.++.+.||.|..+.+..+ .|-..|..|++..++
T Consensus 147 ~~-------------------~-----~~~~a~~l~~~GI~i~tVGiG~~-~d~~~~~~L~~ias~ 187 (193)
T cd01477 147 SN-------------------D-----PRPIAARLKSTGIAIITVAFTQD-ESSNLLDKLGKIASP 187 (193)
T ss_pred CC-------------------C-----HHHHHHHHHHCCCEEEEEEeCCC-CCHHHHHHHHHhcCC
Confidence 00 0 14678889999999999888653 443334444444443
No 39
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.81 E-value=0.00065 Score=78.82 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=99.9
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEE-EEcCCCCCCCceeeccCccccCCCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHF-YSLAEGQTQPSQMILTDIDDIFLPS 391 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~-y~l~~~~~~~~~~vv~dl~d~f~p~ 391 (912)
..-++||||+|.+.-...+++.++..+...+..+.. ..+++||+|+|++..+. +.+....
T Consensus 42 ~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~r~vfpL~s~~------------------ 103 (576)
T PTZ00441 42 EVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNTTELIRLGSGA------------------ 103 (576)
T ss_pred CceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCceEEEecCCCc------------------
Confidence 556899999998654455667778888888877753 34578999999887643 3332211
Q ss_pred CCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC------CEEEEEecCCCCCCCCcccCCCC
Q psy14673 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG------GRITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G------GrI~~f~~g~pt~GpG~l~~~~~ 465 (912)
...+..+..+|..|.... .....+.+|.||..|...+...| +-||||++|.++.+.
T Consensus 104 --------s~Dk~~aL~~I~sL~~~~--~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns~~-------- 165 (576)
T PTZ00441 104 --------SKDKEQALIIVKSLRKTY--LPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNSKY-------- 165 (576)
T ss_pred --------cccHHHHHHHHHHHHhhc--cCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCCcc--------
Confidence 001122333343332211 12346889999999988886543 568889888754210
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccc----cCCCceEEecCCCC
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVS----KFSSGCIHHIPLYS 531 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~----~~TGG~v~~~~~f~ 531 (912)
+ ..+.+.++...||.|-+|.++. ..+...+..++ ..++|.+|.+.+|.
T Consensus 166 ----------------d-vleaAq~LR~~GVeI~vIGVG~-g~n~e~LrlIAgC~p~~g~c~~Y~vadf~ 217 (576)
T PTZ00441 166 ----------------R-ALEESRKLKDRNVKLAVIGIGQ-GINHQFNRLLAGCRPREGKCKFYSDADWE 217 (576)
T ss_pred ----------------c-HHHHHHHHHHCCCEEEEEEeCC-CcCHHHHHHHhccCCCCCCCceEEeCCHH
Confidence 0 0134566777888777776644 35555555455 33456777777775
No 40
>KOG3598|consensus
Probab=97.77 E-value=2.5e-05 Score=94.81 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.6
Q ss_pred hccccC
Q psy14673 222 NSQFSN 227 (912)
Q Consensus 222 QQQ~~~ 227 (912)
|+|.++
T Consensus 2199 Q~qLs~ 2204 (2220)
T KOG3598|consen 2199 QMQLSA 2204 (2220)
T ss_pred HHHhhh
Confidence 444433
No 41
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.76 E-value=0.00073 Score=67.48 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=93.9
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~ 395 (912)
.+||||.|...-.. -++.+++.++..+..+.- ..+++||||+|++..++.- ++.+ +
T Consensus 3 v~~vlD~S~Sm~~~-~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~~~~--------------~l~~--------~ 59 (164)
T cd01482 3 IVFLVDGSWSIGRS-NFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPRTEF--------------DLNA--------Y 59 (164)
T ss_pred EEEEEeCCCCcChh-hHHHHHHHHHHHHhheeeCCCceEEEEEEECCCeeEEE--------------ecCC--------C
Confidence 68999998765433 367788888888876632 2346999999999764420 0110 0
Q ss_pred ccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC-CC------CEEEEEecCCCCCCCCcccCCCCCC
Q psy14673 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TG------GRITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~G------GrI~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
..++.+.+.|+++.. ....+.+|.||..|.. ++.. .| ..|++|++|.++..
T Consensus 60 -----~~~~~l~~~l~~~~~-----~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~----------- 118 (164)
T cd01482 60 -----TSKEDVLAAIKNLPY-----KGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDD----------- 118 (164)
T ss_pred -----CCHHHHHHHHHhCcC-----CCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCch-----------
Confidence 123445556666642 2345789999998776 4442 12 24888888864310
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCc-eEEecC
Q psy14673 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG-CIHHIP 528 (912)
Q Consensus 468 ~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG-~v~~~~ 528 (912)
.++.+.++.+.||.+ |+++.+..+..+|..++..+.+ .++...
T Consensus 119 ----------------~~~~a~~lk~~gi~i--~~ig~g~~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 119 ----------------VELPARVLRNLGVNV--FAVGVKDADESELKMIASKPSETHVFNVA 162 (164)
T ss_pred ----------------HHHHHHHHHHCCCEE--EEEecCcCCHHHHHHHhCCCchheEEEcC
Confidence 145677787888754 4444455668889999888654 444443
No 42
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.75 E-value=0.00084 Score=80.63 Aligned_cols=174 Identities=14% Similarity=0.145 Sum_probs=116.7
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcC-CCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLP 390 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~l-p~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p 390 (912)
...-.++||||+|.+. ..+-+..++.++...|... .... +||||+|++...-+ + +|
T Consensus 405 ~~~~~v~fvvD~SGSM-~~~rl~~aK~av~~Ll~~~~~~~D--~v~Li~F~~~~a~~------------~--------lp 461 (589)
T TIGR02031 405 KSGRLLIFVVDASGSA-AVARMSEAKGAVELLLGEAYVHRD--QVSLIAFRGTAAEV------------L--------LP 461 (589)
T ss_pred ccCceEEEEEECCCCC-ChHHHHHHHHHHHHHHHhhccCCC--EEEEEEECCCCceE------------E--------CC
Confidence 4466789999999864 3345888888888888643 3333 89999997543111 1 11
Q ss_pred CCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCC--EEEEEecCCCCCCCCcccCCCC
Q psy14673 391 SPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGG--RITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 391 ~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GG--rI~~f~~g~pt~GpG~l~~~~~ 465 (912)
... ..+.+...|+.|+ ....+.++.||..|..+++. .++ .|+++++|.+|.|.+.....+.
T Consensus 462 ~t~--------~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~ 527 (589)
T TIGR02031 462 PSR--------SVEQAKRRLDVLP------GGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIK 527 (589)
T ss_pred CCC--------CHHHHHHHHhcCC------CCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCccccccc
Confidence 111 2233345566664 24568899999999998863 243 6999999999987532110000
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCC
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYS 531 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~ 531 (912)
+. ..+..+-...++..+.+.||.+-++-+...+.+...+..|++..||..|+.++-+
T Consensus 528 ~~---------~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~~~~g~y~~l~~~~ 584 (589)
T TIGR02031 528 AD---------REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLARKMGAHYIYLPNAT 584 (589)
T ss_pred cc---------chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHHhcCCcEEeCCCCC
Confidence 00 1123344467788999999887777777777777778999999999999998765
No 43
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=97.71 E-value=5.2e-06 Score=71.43 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCccccccccccccCeEEEEeCCceEEEEecCCCC
Q psy14673 777 IPRILQLSAERLQATGTYLLNMPDLIIILVRHGTS 811 (912)
Q Consensus 777 ~P~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~ 811 (912)
.|..++++.+.|.++++||||+|..||+|+|+..+
T Consensus 4 ~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~ 38 (76)
T PF00626_consen 4 RPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSS 38 (76)
T ss_dssp EEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSH
T ss_pred cCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCC
Confidence 45567899999999999999999999999999933
No 44
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=97.67 E-value=0.0011 Score=64.49 Aligned_cols=148 Identities=21% Similarity=0.276 Sum_probs=99.6
Q ss_pred EEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
.++|+||+|... ....++.+++.+...+..+... ...+||++.|+...+.+- ++.+.
T Consensus 2 ~v~~viD~S~Sm-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~~~~--------------~~~~~------- 59 (161)
T cd00198 2 DIVFLLDVSGSM-GGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVL--------------PLTTD------- 59 (161)
T ss_pred cEEEEEeCCCCc-CcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccceee--------------ccccc-------
Confidence 378999999865 4457888999999999888762 235999999997433210 00000
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPNQR 469 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~f~~g~pt~GpG~l~~~~~~~~~ 469 (912)
...+.+..+++.+.. .......+..|+..|...+.. ....|++|++|.++.+. .
T Consensus 60 ------~~~~~~~~~~~~~~~----~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~~-----~------ 118 (161)
T cd00198 60 ------TDKADLLEAIDALKK----GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDGP-----E------ 118 (161)
T ss_pred ------CCHHHHHHHHHhccc----CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCCc-----c------
Confidence 123444555666542 345667889999999998865 35678888888765543 0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCC
Q psy14673 470 SNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 520 (912)
Q Consensus 470 ~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~T 520 (912)
-..+...++.+.+|.|.++.++. ..+-..+..++..|
T Consensus 119 -------------~~~~~~~~~~~~~v~v~~v~~g~-~~~~~~l~~l~~~~ 155 (161)
T cd00198 119 -------------LLAEAARELRKLGITVYTIGIGD-DANEDELKEIADKT 155 (161)
T ss_pred -------------hhHHHHHHHHHcCCEEEEEEcCC-CCCHHHHHHHhccc
Confidence 01345666777799998888776 45566778888777
No 45
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.66 E-value=0.0017 Score=65.00 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=95.8
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
.+|+||.|..- ...-++.+++.++..++.+.-. ..++||+|+|++..+.. +|. +.
T Consensus 3 ivfllD~S~Si-~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~~~~~l~---------------~~------- 59 (165)
T cd01481 3 IVFLIDGSDNV-GSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPRPEFYLN---------------TH------- 59 (165)
T ss_pred EEEEEeCCCCc-CHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCeeEEEecc---------------cc-------
Confidence 58999998753 3334788888899988887642 35799999998876431 111 11
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC-CCCE--------EEEEecCCCCCCCCcccCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP-TGGR--------ITIFQTCLPNRGPGALQSRE 464 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~-~GGr--------I~~f~~g~pt~GpG~l~~~~ 464 (912)
..++.|.+.+++++.. ....+.+|.||..|.. ++.. .|+| ++++++|..+-
T Consensus 60 ------~~~~~l~~~i~~i~~~----~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d--------- 120 (165)
T cd01481 60 ------STKADVLGAVRRLRLR----GGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD--------- 120 (165)
T ss_pred ------CCHHHHHHHHHhcccC----CCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc---------
Confidence 0233455666666421 1223579999998876 4443 3332 56777764220
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCC
Q psy14673 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (912)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f 530 (912)
+ ..+-|..+.+.|| .+|+.+....|..+|..++... -.++..++|
T Consensus 121 -----------------~-~~~~a~~lr~~gv--~i~~vG~~~~~~~eL~~ias~p-~~vf~v~~f 165 (165)
T cd01481 121 -----------------D-VERPAVALKRAGI--VPFAIGARNADLAELQQIAFDP-SFVFQVSDF 165 (165)
T ss_pred -----------------h-HHHHHHHHHHCCc--EEEEEeCCcCCHHHHHHHhCCC-ccEEEecCC
Confidence 1 2456777888885 4677666668889998888665 356655544
No 46
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.65 E-value=0.0024 Score=65.55 Aligned_cols=150 Identities=10% Similarity=0.110 Sum_probs=93.4
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
.+|+||.|...-+..+-..+++.++..++.+.-. .++|||+|+|++..+++ .+...
T Consensus 3 i~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~~~~~~~~~---------------------- 60 (192)
T cd01473 3 LTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNRDVVPFSDE---------------------- 60 (192)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCceeEEecCcc----------------------
Confidence 5899999986544444335677777777776532 35799999999876542 22110
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCC------E-EEEEecCCCCCCCCcccCCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG------R-ITIFQTCLPNRGPGALQSRENPN 467 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG------r-I~~f~~g~pt~GpG~l~~~~~~~ 467 (912)
....++.+...+++|...+. ....+.+|.||..|...+...+| | ++++|+|..+.+-
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~--~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~---------- 124 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYR--SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSAS---------- 124 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccC--CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcc----------
Confidence 00123445556666653211 23577899999999887754322 2 7777777543310
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccC
Q psy14673 468 QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 519 (912)
Q Consensus 468 ~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (912)
..--.+.|..+.+.||.|-.+..+. .+-.+|..++..
T Consensus 125 -------------~~~~~~~a~~lk~~gV~i~~vGiG~--~~~~el~~ia~~ 161 (192)
T cd01473 125 -------------KKELQDISLLYKEENVKLLVVGVGA--ASENKLKLLAGC 161 (192)
T ss_pred -------------hhhHHHHHHHHHHCCCEEEEEEecc--ccHHHHHHhcCC
Confidence 0012456778888999887777654 456777777754
No 47
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=97.61 E-value=0.0021 Score=64.27 Aligned_cols=154 Identities=21% Similarity=0.204 Sum_probs=106.3
Q ss_pred cEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy14673 315 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (912)
Q Consensus 315 p~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~ 393 (912)
.-++||||+|.... ...++.+++.+...+..+... ...+||+|+|++..+.+. |..
T Consensus 2 ~~v~l~vD~S~SM~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~~~~---------------------~~~- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG-PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDATVLF---------------------PLN- 58 (177)
T ss_pred ccEEEEEeCCCccc-hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCceEEE---------------------ccc-
Confidence 34789999987653 345788888888888888652 345999999998543321 000
Q ss_pred CcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---C-----CCEEEEEecCCCCCCCCcccCCCC
Q psy14673 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---T-----GGRITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~-----GGrI~~f~~g~pt~GpG~l~~~~~ 465 (912)
.....+.+...++.+... .....-++.||..|...++. . .-.|++|++|.++.+
T Consensus 59 -----~~~~~~~~~~~i~~~~~~----~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~--------- 120 (177)
T smart00327 59 -----DSRSKDALLEALASLSYK----LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG--------- 120 (177)
T ss_pred -----ccCCHHHHHHHHHhcCCC----CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC---------
Confidence 011234556666666421 34567899999999998752 1 236888888876654
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEe
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 526 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (912)
+.+.+...++.+.+|.+..+.+..+. +-..|..++..++|...+
T Consensus 121 ----------------~~~~~~~~~~~~~~i~i~~i~~~~~~-~~~~l~~~~~~~~~~~~~ 164 (177)
T smart00327 121 ----------------GDLLKAAKELKRSGVKVFVVGVGNDV-DEEELKKLASAPGGVYVF 164 (177)
T ss_pred ----------------ccHHHHHHHHHHCCCEEEEEEccCcc-CHHHHHHHhCCCcceEEe
Confidence 12467777888888888888877553 888899999999987765
No 48
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=97.57 E-value=0.00073 Score=82.01 Aligned_cols=161 Identities=19% Similarity=0.280 Sum_probs=107.8
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~-V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
.....++||||+|.+....+-+..++.++...+.. +.... +||||+|+.. ..+ .+
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D--~v~lI~F~g~~a~~---------------------~~ 519 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRD--KVALITFRGEEAEV---------------------LL 519 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEECCCCceE---------------------Ec
Confidence 34567889999998764434577778777777643 33333 8999999743 221 11
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-------CCCEEEEEecCCCCCCCCcccC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-------TGGRITIFQTCLPNRGPGALQS 462 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-------~GGrI~~f~~g~pt~GpG~l~~ 462 (912)
|. ....+.+...|+.|+ ....+.++.||..|..++.. ..+.|+++++|.+|.|.+.
T Consensus 520 p~--------t~~~~~~~~~L~~l~------~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~--- 582 (633)
T TIGR02442 520 PP--------TSSVELAARRLEELP------TGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGG--- 582 (633)
T ss_pred CC--------CCCHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCC---
Confidence 11 112334445666664 24668899999999998872 3367999999999986211
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEec
Q psy14673 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHI 527 (912)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~ 527 (912)
. + +..+ -..+|.++.+.||.+.++-+....++...+..||+.+||..+..
T Consensus 583 ~-~-------------~~~~-~~~~a~~l~~~~i~~~vIdt~~~~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 583 E-P-------------PTDD-ARTIAAKLAARGILFVVIDTESGFVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred C-C-------------hHHH-HHHHHHHHHhcCCeEEEEeCCCCCcchhHHHHHHHhhCCeEEec
Confidence 0 0 1111 24567777778887777766666778888999999999998864
No 49
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.48 E-value=0.0012 Score=66.20 Aligned_cols=155 Identities=18% Similarity=0.287 Sum_probs=95.5
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcC-CCCCCceEEEEEEccEEEEE-EcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSM-PGDRRTSIAIITYDSAVHFY-SLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~l-p~~~~~~VglITfd~~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
.+|+||.|...-.. -++.+++.+...++.+ ..+.+.+||+|+|++.++++ .+...
T Consensus 2 ivflvD~S~sm~~~-~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~~~~~~~~~---------------------- 58 (178)
T PF00092_consen 2 IVFLVDTSGSMSGD-NFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSARVLFSLTDY---------------------- 58 (178)
T ss_dssp EEEEEE-STTSCHH-HHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEEEEEETTSH----------------------
T ss_pred EEEEEeCCCCCchH-HHHHHHHHHHHHHHhhhccccccccceeeeecccccccccccc----------------------
Confidence 58999999864432 3677889999998876 33456799999999987632 22110
Q ss_pred cccchhHhHHHHHHHH-HhCCccccCCCCCCCcHHHHHHHHHHhhcCC--C------CEEEEEecCCCCCCCCcccCCCC
Q psy14673 395 ILVNLSECYDMIVDLL-KQLPGKFKDSLDSGSALGPALQAAFKLLQPT--G------GRITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL-~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~--G------GrI~~f~~g~pt~GpG~l~~~~~ 465 (912)
...+.+...+ ..+. .....+.+|.||..|...+... | .-|+++++|.++.++-
T Consensus 59 ------~~~~~~~~~i~~~~~-----~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~------- 120 (178)
T PF00092_consen 59 ------QSKNDLLNAINDSIP-----SSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDS------- 120 (178)
T ss_dssp ------SSHHHHHHHHHTTGG-----CCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSG-------
T ss_pred ------ccccccccccccccc-----ccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcc-------
Confidence 1122222333 3332 3456677999999999988643 2 2577888877655310
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccC--CCceEEecCCCC
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF--SSGCIHHIPLYS 531 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~--TGG~v~~~~~f~ 531 (912)
. ...+..+.+. ..|.+|+.+.+..+..+|..|+.. .+|.+++..+|.
T Consensus 121 -------------~-----~~~~~~~~~~-~~i~~~~ig~~~~~~~~l~~la~~~~~~~~~~~~~~~~ 169 (178)
T PF00092_consen 121 -------------P-----SEEAANLKKS-NGIKVIAIGIDNADNEELRELASCPTSEGHVFYLADFS 169 (178)
T ss_dssp -------------H-----HHHHHHHHHH-CTEEEEEEEESCCHHHHHHHHSHSSTCHHHEEEESSHH
T ss_pred -------------h-----HHHHHHHHHh-cCcEEEEEecCcCCHHHHHHHhCCCCCCCcEEEcCCHH
Confidence 0 1111122221 455666666677888999999855 447788887765
No 50
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.46 E-value=0.0037 Score=74.58 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=110.4
Q ss_pred CCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE-EEEEEcCCCCCCCceeeccCccccCC
Q psy14673 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA-VHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~-V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
..+-.++||||+|.+.. ..-+..+|.++...|.. +.... +||||+|++. ..+ + +
T Consensus 399 ~~~~~vvfvvD~SGSM~-~~rl~~aK~a~~~ll~~ay~~rD--~v~lI~F~g~~a~~-------------~--------l 454 (584)
T PRK13406 399 RSETTTIFVVDASGSAA-LHRLAEAKGAVELLLAEAYVRRD--QVALVAFRGRGAEL-------------L--------L 454 (584)
T ss_pred cCCccEEEEEECCCCCc-HhHHHHHHHHHHHHHHhhcCCCC--EEEEEEECCCceeE-------------E--------c
Confidence 45688999999998753 33688899988888854 33333 8999999654 321 1 1
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSRE 464 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~f~~g~pt~GpG~l~~~~ 464 (912)
|... +.+.+...|+.|+ ....+.++.||..|..+++. .| -.|+++++|-+|.|.+.-..+.
T Consensus 455 ppT~--------~~~~~~~~L~~l~------~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~ 520 (584)
T PRK13406 455 PPTR--------SLVRAKRSLAGLP------GGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRA 520 (584)
T ss_pred CCCc--------CHHHHHHHHhcCC------CCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCcccccccc
Confidence 1111 2223345566664 34778999999999988753 22 5899999999998754222121
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCC
Q psy14673 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 532 (912)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~ 532 (912)
.. ..+ =..++..+.+.+|.+-++-+.... ...+..||+.+||..|..+.-+.
T Consensus 521 ~~-------------~~~-~~~~a~~~~~~gi~~~vId~g~~~--~~~~~~LA~~~gg~y~~l~~~~a 572 (584)
T PRK13406 521 QA-------------EED-ALAAARALRAAGLPALVIDTSPRP--QPQARALAEAMGARYLPLPRADA 572 (584)
T ss_pred ch-------------hhH-HHHHHHHHHhcCCeEEEEecCCCC--cHHHHHHHHhcCCeEEECCCCCH
Confidence 10 001 145677788888876666655443 34589999999999999987664
No 51
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.45 E-value=0.0062 Score=60.52 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=67.9
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC-CCceEEEEEEcc--EEEEE-EcCCCCCCCceeeccCccccCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD-RRTSIAIITYDS--AVHFY-SLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~-~~~~VglITfd~--~V~~y-~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
++|+||+|..... .++..++.++..+..+... .+.+||+|+|++ ..++. .+..
T Consensus 3 v~~llD~S~Sm~~--~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~--------------------- 59 (163)
T cd01476 3 LLFVLDSSGSVRG--KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPK--------------------- 59 (163)
T ss_pred EEEEEeCCcchhh--hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCC---------------------
Confidence 6899999876432 3667788888888877542 246999999988 34331 1110
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-C----C--CEEEEEecCCCCC
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-T----G--GRITIFQTCLPNR 455 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-~----G--GrI~~f~~g~pt~ 455 (912)
...++.+...++.|.. ....+.+|.||..|..++.. . + ..|+++++|.++.
T Consensus 60 -------~~~~~~l~~~i~~l~~-----~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~ 117 (163)
T cd01476 60 -------HNDGEELLEKVDNLRF-----IGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD 117 (163)
T ss_pred -------CCCHHHHHHHHHhCcc-----CCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC
Confidence 0123445566666642 23467899999999999952 1 1 3588888886653
No 52
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=97.35 E-value=0.0028 Score=66.08 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=113.4
Q ss_pred CCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy14673 313 QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 313 ~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
...-+|||||.|.+.....-+++++-++...|..--. -|-+|++|+|... +.
T Consensus 77 ~g~lvvfvVDASgSM~~~~Rm~aaKG~~~~lL~dAYq-~RdkvavI~F~G~-----------~A---------------- 128 (261)
T COG1240 77 AGNLIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQ-RRDKVAVIAFRGE-----------KA---------------- 128 (261)
T ss_pred cCCcEEEEEeCcccchhHHHHHHHHHHHHHHHHHHHH-ccceEEEEEecCC-----------cc----------------
Confidence 4566999999998755555577788777777743222 2449999998532 01
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC-------CEEEEEecCCCCCCCCcccCCCC
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG-------GRITIFQTCLPNRGPGALQSREN 465 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G-------GrI~~f~~g~pt~GpG~l~~~~~ 465 (912)
.++++...+-+.+.+.|+.|+. ...+=+..||..|..++.... -.+++.++|.||.+.+.=...
T Consensus 129 -~lll~pT~sv~~~~~~L~~l~~------GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~-- 199 (261)
T COG1240 129 -ELLLPPTSSVELAERALERLPT------GGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKA-- 199 (261)
T ss_pred -eEEeCCcccHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHH--
Confidence 1222223344566777888863 244559999999999996521 478999999998864331110
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCC
Q psy14673 466 PNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG 532 (912)
Q Consensus 466 ~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~ 532 (912)
. -...+.++...|+-+=+.-+-..++.+.-...||...||.+++.+..+.
T Consensus 200 ---------------e--~~~~a~~~~~~g~~~lvid~e~~~~~~g~~~~iA~~~Gg~~~~L~~l~~ 249 (261)
T COG1240 200 ---------------E--TLEAASKLRLRGIQLLVIDTEGSEVRLGLAEEIARASGGEYYHLDDLSD 249 (261)
T ss_pred ---------------H--HHHHHHHHhhcCCcEEEEecCCccccccHHHHHHHHhCCeEEecccccc
Confidence 0 1345666677777666676777778888889999999999999987664
No 53
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.30 E-value=0.0083 Score=62.95 Aligned_cols=151 Identities=20% Similarity=0.216 Sum_probs=90.9
Q ss_pred EEEEEEEccHhHHh------hchHHHHHHHHHHHHhc----CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcc
Q psy14673 316 MYLFLLDVSQIAAQ------SGYLYTVCEVLLNQLKS----MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDID 385 (912)
Q Consensus 316 ~~vFvID~s~~a~~------~g~l~~~~~si~~~L~~----lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~ 385 (912)
+.+|+||+|....+ ...|+.+++.+...+.. .+.+ +||+|.|++.-.--. .+ -...+++.++.
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D---~vGlilf~t~~~~~~--~~--~~~i~v~~~l~ 75 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKD---LVGVVFYGTEESKNP--VG--YENIYVLLDLD 75 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCC---eEEEEEEcccCCCCc--CC--CCceEEeecCC
Confidence 47999999986532 24588888888888874 4444 899999988632110 01 11222333321
Q ss_pred ccCCCCCCCcccchhHhHHHHHHHHHhCCcc-c----cCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCC
Q psy14673 386 DIFLPSPENILVNLSECYDMIVDLLKQLPGK-F----KDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNR 455 (912)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~-~----~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~f~~g~pt~ 455 (912)
.+ ..+.|..+++.+... . .........++.||.+|..++.. ..-||++||+|--..
T Consensus 76 ~~--------------~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~ 141 (218)
T cd01458 76 TP--------------GAERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH 141 (218)
T ss_pred CC--------------CHHHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC
Confidence 11 112333333333211 0 11234678899999999999975 235799999976444
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC
Q psy14673 456 GPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 506 (912)
Q Consensus 456 GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~ 506 (912)
|... -...-+.+++.++.+.||.|.+|....+
T Consensus 142 ~~~~-------------------~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 142 GGDS-------------------IKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CCCH-------------------HHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 3100 0122356788899899999999986544
No 54
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.25 E-value=0.001 Score=67.30 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC----CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCC
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSP 392 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~----~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~ 392 (912)
.+||||+|.+.. ...++.+++++...++.+..+ .+.+||+|+|++..++.- .. .++++.
T Consensus 6 v~~llD~SgSM~-~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~~~~---~l--------~~~~~~----- 68 (176)
T cd01464 6 IYLLLDTSGSMA-GEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIV---PL--------TPLESF----- 68 (176)
T ss_pred EEEEEECCCCCC-ChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCceEec---CC--------ccHHhc-----
Confidence 579999997643 334677888888888777543 356999999999766420 00 000000
Q ss_pred CCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---------C---CEEEEEecCCCCCCCCcc
Q psy14673 393 ENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---------G---GRITIFQTCLPNRGPGAL 460 (912)
Q Consensus 393 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---------G---GrI~~f~~g~pt~GpG~l 460 (912)
.++.| .....+++|.||..|...+... + ..|+++|+|.|+.++.
T Consensus 69 ----------------~~~~l------~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~-- 124 (176)
T cd01464 69 ----------------QPPRL------TASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLT-- 124 (176)
T ss_pred ----------------CCCcc------cCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHH--
Confidence 00111 1235789999999999988531 1 1699999998754211
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhccccc
Q psy14673 461 QSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSK 518 (912)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~ 518 (912)
... +....+.+.++.|..|.++. .+|...|..++.
T Consensus 125 ------------------~~~----~~~~~~~~~~~~i~~igiG~-~~~~~~L~~ia~ 159 (176)
T cd01464 125 ------------------AAI----ERIKEARDSKGRIVACAVGP-KADLDTLKQITE 159 (176)
T ss_pred ------------------HHH----HHHHhhcccCCcEEEEEecc-ccCHHHHHHHHC
Confidence 011 22223334467777777665 578888887774
No 55
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=97.15 E-value=0.0071 Score=61.35 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=105.3
Q ss_pred EEEccHhHHhh----chHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 320 LLDVSQIAAQS----GYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 320 vID~s~~a~~~----g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
|||.|....+. ..+.++++.+...++. +..|+-..+|||+.-+.+- ..++++
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a-------------~~ls~l---------- 57 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRA-------------ERLSEL---------- 57 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeeccee-------------EEeeec----------
Confidence 58998775543 2466777777666643 4446666899998644321 111121
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---CC-EEEEEecCCCCCCCCcccCCCCCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---GG-RITIFQTCLPNRGPGALQSRENPNQRS 470 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---GG-rI~~f~~g~pt~GpG~l~~~~~~~~~~ 470 (912)
+..-....+.|.++.. ........+-.||+.|...|+.. |. +|+++.++.-|..||.+
T Consensus 58 -----sgn~~~h~~~L~~~~~---~~~~G~~SLqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di---------- 119 (193)
T PF04056_consen 58 -----SGNPQEHIEALKKLRK---LEPSGEPSLQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDI---------- 119 (193)
T ss_pred -----CCCHHHHHHHHHHhcc---CCCCCChhHHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhH----------
Confidence 1111122233444432 24556778999999999999863 33 56666777666655532
Q ss_pred CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhh
Q psy14673 471 NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLT 550 (912)
Q Consensus 471 ~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~ 550 (912)
.+..+.+.+.+|-|+++.++. .+.-++.+|+.|||..... .+.+.|..-|.....
T Consensus 120 --------------~~ti~~l~~~~IrvsvI~laa---Ev~I~k~i~~~T~G~y~V~--------lde~H~~~lL~~~~~ 174 (193)
T PF04056_consen 120 --------------HETIESLKKENIRVSVISLAA---EVYICKKICKETGGTYGVI--------LDEDHFKELLMEHVP 174 (193)
T ss_pred --------------HHHHHHHHHcCCEEEEEEEhH---HHHHHHHHHHhhCCEEEEe--------cCHHHHHHHHHhhCC
Confidence 367788999999999999886 4777899999999954432 234567666665543
No 56
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=96.93 E-value=0.02 Score=57.63 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=86.6
Q ss_pred EEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 316 MYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 316 ~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
.++|+||+|.+......++.+++++...++.+.. +. ++|+++|++... .......+...+.++ .
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d--~~~l~~F~~~~~------~~~~~~~~~~~~~~~-------~ 66 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGV--PHAILGFTTDAG------GRERVRWIKIKDFDE-------S 66 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCC--cEEEEEecCCCC------CccceEEEEecCccc-------c
Confidence 5789999998654324678888887776666654 33 899999988630 000001111111111 1
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSN 471 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~ 471 (912)
+ ...+...|..+. ....+.+|.||..|...+.. ....|+++++|.|+.+...-.
T Consensus 67 ~-------~~~~~~~l~~~~------~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~~~~~~---------- 123 (174)
T cd01454 67 L-------HERARKRLAALS------PGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDLDYYEG---------- 123 (174)
T ss_pred c-------chhHHHHHHccC------CCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcccccCc----------
Confidence 1 012233344442 13368999999999998864 346788999999887632100
Q ss_pred CCCCCCCchHHHHHHH---HHHHhhCCcEEEEEEecCCc
Q psy14673 472 DDPPHMNPATDFYKKI---ALECTSFYIAVDLFILNSQY 507 (912)
Q Consensus 472 ~~~~~~~~~~~fY~~L---a~~~~~~~isvdlf~~s~~~ 507 (912)
.....++. +.++.+.||.+..+.+..+.
T Consensus 124 --------~~~~~~~~~~~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 124 --------NVFATEDALRAVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred --------chhHHHHHHHHHHHHHhCCcEEEEEEecCcc
Confidence 00012223 77788889998877776553
No 57
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=96.92 E-value=0.0055 Score=54.51 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCCCChhH
Q psy14673 781 LQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814 (912)
Q Consensus 781 l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~~~ 814 (912)
++++.+.|.++.+||||+|..||+|+|+.+++.-
T Consensus 16 ~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~e 49 (90)
T smart00262 16 VPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDE 49 (90)
T ss_pred cCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHH
Confidence 4578899999999999999999999999988664
No 58
>KOG2884|consensus
Probab=96.80 E-value=0.027 Score=56.63 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=91.7
Q ss_pred EEEEEEEccHhHHhhch----HHHHHHHHHHHH-hcCCCCCCceEEEEEEcc-EEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 316 MYLFLLDVSQIAAQSGY----LYTVCEVLLNQL-KSMPGDRRTSIAIITYDS-AVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 316 ~~vFvID~s~~a~~~g~----l~~~~~si~~~L-~~lp~~~~~~VglITfd~-~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
+-+.|||-|.....-.| |++=++++-... ..+..|+...|||||... .+.+.. -
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLs--------------T------ 64 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLS--------------T------ 64 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeee--------------e------
Confidence 56789999877664333 455555554433 234444444799999754 443321 0
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC---C--CEEEEEecCCCCCCCCcccCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT---G--GRITIFQTCLPNRGPGALQSRE 464 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~---G--GrI~~f~~g~pt~GpG~l~~~~ 464 (912)
+..-+-.|...+..|+ ...+.-++.+|++|..+|+++ + -||++|+++|-..
T Consensus 65 ---------~T~d~gkils~lh~i~------~~g~~~~~~~i~iA~lalkhRqnk~~~~riVvFvGSpi~e--------- 120 (259)
T KOG2884|consen 65 ---------LTSDRGKILSKLHGIQ------PHGKANFMTGIQIAQLALKHRQNKNQKQRIVVFVGSPIEE--------- 120 (259)
T ss_pred ---------ccccchHHHHHhcCCC------cCCcccHHHHHHHHHHHHHhhcCCCcceEEEEEecCcchh---------
Confidence 0001223444455553 235567999999999999873 3 6999999987322
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCc
Q psy14673 465 NPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 522 (912)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG 522 (912)
..+-.-++|+++.+++|+|||+.|.-...+-.-+......++|
T Consensus 121 ---------------~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~ 163 (259)
T KOG2884|consen 121 ---------------SEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNG 163 (259)
T ss_pred ---------------hHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcC
Confidence 1123457999999999999999988765553434444444444
No 59
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=96.52 E-value=0.011 Score=58.23 Aligned_cols=101 Identities=21% Similarity=0.335 Sum_probs=67.0
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCC----CCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGD----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~----~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
-|+| |++|+|...+. .-++++...|.+.++.|..+ .+..++|||||+.+++|.- ..|++..+.
T Consensus 4 lP~~-lllDtSgSM~G-e~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p-----------f~~~~nF~~ 70 (207)
T COG4245 4 LPCY-LLLDTSGSMIG-EPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP-----------FTDAANFNP 70 (207)
T ss_pred CCEE-EEEecCccccc-ccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec-----------hhhHhhcCC
Confidence 4554 68999986553 34778888888888888765 3569999999997776521 112222111
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC------C------CEEEEEecCCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT------G------GRITIFQTCLPN 454 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~------G------GrI~~f~~g~pt 454 (912)
|. | .....+.+|+||..|..+++.. . -=|++.++|-||
T Consensus 71 p~---------------------L------~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~Pt 120 (207)
T COG4245 71 PI---------------------L------TAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPT 120 (207)
T ss_pred Cc---------------------e------ecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcc
Confidence 11 0 2236788999999999999751 1 256777777663
No 60
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=96.08 E-value=0.14 Score=50.10 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=75.4
Q ss_pred EEEEEEccHhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCc
Q psy14673 317 YLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENI 395 (912)
Q Consensus 317 ~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~ 395 (912)
++|+||+|.+... .-+...+..+...+..+.. +. +|++|+|++....+.+. ...+
T Consensus 3 v~illD~SgSM~~-~k~~~a~~~~~~l~~~~~~~~~--~v~li~F~~~~~~~~~~--------------------~~~~- 58 (152)
T cd01462 3 VILLVDQSGSMYG-APEEVAKAVALALLRIALAENR--DTYLILFDSEFQTKIVD--------------------KTDD- 58 (152)
T ss_pred EEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHHcCC--cEEEEEeCCCceEEecC--------------------Cccc-
Confidence 6899999986442 2244455555555554442 33 89999998873221110 0001
Q ss_pred ccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCCC
Q psy14673 396 LVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSND 472 (912)
Q Consensus 396 lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~~ 472 (912)
+..+++.|... .....+.++.||..+...+.. ..+.|++|++|..+..
T Consensus 59 ----------~~~~~~~l~~~---~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~---------------- 109 (152)
T cd01462 59 ----------LEEPVEFLSGV---QLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV---------------- 109 (152)
T ss_pred ----------HHHHHHHHhcC---CCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC----------------
Confidence 11223333221 124678999999999999875 2468999998852110
Q ss_pred CCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC
Q psy14673 473 DPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ 506 (912)
Q Consensus 473 ~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~ 506 (912)
..+.. +.+....+.++.|..|.++.+
T Consensus 110 -------~~~~~-~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 110 -------SDELL-REVELKRSRVARFVALALGDH 135 (152)
T ss_pred -------CHHHH-HHHHHHHhcCcEEEEEEecCC
Confidence 11222 344555566799999988764
No 61
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.47 Score=46.80 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=86.9
Q ss_pred CcEEEEEEEccHhHHhhc----hHHHHHHHHHHHHh-cCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccC
Q psy14673 314 PAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLK-SMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 388 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g----~l~~~~~si~~~L~-~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f 388 (912)
+-+.|.+||-|..+.... .+++-++++...+. ...+++...||||+-.. .+|+.+.
T Consensus 3 lEatvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~-----------a~p~vls-------- 63 (243)
T COG5148 3 LEATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQ-----------AQPNVLS-------- 63 (243)
T ss_pred cceEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeeccc-----------CCcchhc--------
Confidence 346788999998776543 35666777776663 34455555899987422 1333211
Q ss_pred CCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CC--CEEEEEecCCCCCCCCcccCC
Q psy14673 389 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TG--GRITIFQTCLPNRGPGALQSR 463 (912)
Q Consensus 389 ~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~G--GrI~~f~~g~pt~GpG~l~~~ 463 (912)
....-+-.|..+|..++- +.+--+|-+|..|..+|+. .| -||++|+++|...
T Consensus 64 ---------T~T~~~gkilt~lhd~~~------~g~a~~~~~lqiaql~lkhR~nk~q~qriVaFvgSpi~e-------- 120 (243)
T COG5148 64 ---------TPTKQRGKILTFLHDIRL------HGGADIMRCLQIAQLILKHRDNKGQRQRIVAFVGSPIQE-------- 120 (243)
T ss_pred ---------cchhhhhHHHHHhccccc------cCcchHHHHHHHHHHHHhcccCCccceEEEEEecCcccc--------
Confidence 112234456666666642 3445588899999999986 34 6999999987322
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEec
Q psy14673 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILN 504 (912)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s 504 (912)
+.+-.-.||+.+.+++|+|||+.++
T Consensus 121 ----------------sedeLirlak~lkknnVAidii~fG 145 (243)
T COG5148 121 ----------------SEDELIRLAKQLKKNNVAIDIIFFG 145 (243)
T ss_pred ----------------cHHHHHHHHHHHHhcCeeEEEEehh
Confidence 1122346899999999999999765
No 62
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=95.12 E-value=0.35 Score=58.25 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=85.3
Q ss_pred cEEEEEEEccHhHHh-------hchHHHHHHHHHHHHh-cCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccc
Q psy14673 315 AMYLFLLDVSQIAAQ-------SGYLYTVCEVLLNQLK-SMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 386 (912)
Q Consensus 315 p~~vFvID~s~~a~~-------~g~l~~~~~si~~~L~-~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d 386 (912)
=+.|||||+|....+ ..-+..++++|...+. .+--+++..||++.|++.=+ ++...-...+|+.+|+.
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t----~n~~~~~~i~v~~~L~~ 86 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKD----KNSVNFKNIYVLQELDN 86 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCC----CCccCCCceEEEeeCCC
Confidence 468999999977543 1224455555666553 33334556899999987632 11222234456666554
Q ss_pred cCCCCCCCcccchhHhHHHHHHHHHh-CCcccc--CCCCCCCcHHHHHHHHHHhhcC----CC-CEEEEEecCCCCCCCC
Q psy14673 387 IFLPSPENILVNLSECYDMIVDLLKQ-LPGKFK--DSLDSGSALGPALQAAFKLLQP----TG-GRITIFQTCLPNRGPG 458 (912)
Q Consensus 387 ~f~p~~~~~lv~l~e~~~~i~~lL~~-L~~~~~--~~~~~~~~~G~AL~~A~~ll~~----~G-GrI~~f~~g~pt~GpG 458 (912)
+-. +.-..|.+|++. -...|. -+......+..||.+|..++.. .| =||++||+.-.-.|..
T Consensus 87 p~a-----------~~i~~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D~P~~~~ 155 (584)
T TIGR00578 87 PGA-----------KRILELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNEDNPHGND 155 (584)
T ss_pred CCH-----------HHHHHHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCCCCCCCc
Confidence 310 111122333332 111110 1223345899999999999965 23 4799998643222210
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEec
Q psy14673 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILN 504 (912)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s 504 (912)
+ ....==...|.++...||.+++|..+
T Consensus 156 ~-------------------~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 156 S-------------------AKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred h-------------------hHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 0 00000133578888999999999754
No 63
>KOG0443|consensus
Probab=95.05 E-value=0.048 Score=64.79 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=40.8
Q ss_pred hhhcceeeecccCCCCCCccccCCcccCCccccccccccccCeEEEEeCCceEEEEecCCCChhHH
Q psy14673 750 LSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAIC 815 (912)
Q Consensus 750 ~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~~~~ 815 (912)
.-..|+||..+.- .+....+ .....+-+.|..|.||||||+..||||||..++++-.
T Consensus 616 ~~~~PrLF~Cs~~--~g~f~~~-------EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~eK 672 (827)
T KOG0443|consen 616 PERDPRLFSCSNK--TGSFVVE-------EIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKEK 672 (827)
T ss_pred CCCCCcEEEEEec--CCcEEEE-------EecCcchhhccccceEEEecCceEEEEecCCCChhHH
Confidence 3457889888741 1111111 1224677899999999999999999999999888754
No 64
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=94.55 E-value=1.6 Score=47.20 Aligned_cols=185 Identities=17% Similarity=0.223 Sum_probs=95.3
Q ss_pred cEEEEEEEccHhHHhh----chHHHHHHHHHHHHhc-CCCCCCceEEEEEEccE--EEEEEcCCC--CCCCceeeccCcc
Q psy14673 315 AMYLFLLDVSQIAAQS----GYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSA--VHFYSLAEG--QTQPSQMILTDID 385 (912)
Q Consensus 315 p~~vFvID~s~~a~~~----g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~--V~~y~l~~~--~~~~~~~vv~dl~ 385 (912)
-..+.|||++..+... ..|..+.++|.--+.. |--+..-+|++|..... -.+|.-... .......-..+.+
T Consensus 2 SLLvIILD~nP~~W~~~~~~~~l~~~l~~llvFlNahL~l~~~N~vaVIAs~~~~s~~LYP~~~~~~~~~~~~~~~~~~~ 81 (276)
T PF03850_consen 2 SLLVIILDTNPLAWGQLSDQLSLSQFLDSLLVFLNAHLALNHSNQVAVIASHSNSSKFLYPSPSSSESSNSGDVEMNSSD 81 (276)
T ss_pred cEEEEEEECCHHHHhhccccccHHHHHHHHHHHHHHHHhhCccCCEEEEEEcCCccEEEeCCCccccccCCCcccccccc
Confidence 4568899999776532 2355555555555532 22222337999887443 334432221 0000000011110
Q ss_pred ccCCCCCCCcccchhHhHHHHHHHHHhCCcccc-CCCCC-CCcHHHHHHHHHHhhcC-----------CCCEEEEEecCC
Q psy14673 386 DIFLPSPENILVNLSECYDMIVDLLKQLPGKFK-DSLDS-GSALGPALQAAFKLLQP-----------TGGRITIFQTCL 452 (912)
Q Consensus 386 d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~-~~~~~-~~~~G~AL~~A~~ll~~-----------~GGrI~~f~~g~ 452 (912)
.+..-......+.|.+-+.++-+... ..... .+.+..||..|+-.+.. ..+||++++++-
T Consensus 82 -------~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~~~~~~~~~~~~~~RILv~~s~s 154 (276)
T PF03850_consen 82 -------SNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRISRESPSGGTSLKSRILVIVSGS 154 (276)
T ss_pred -------cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhhhhcccCCCCCcCccEEEEEecC
Confidence 01111112222333333333321111 11111 27788888888776642 236999964432
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCC
Q psy14673 453 PNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLY 530 (912)
Q Consensus 453 pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f 530 (912)
+.. .. .|. =+-+..-.|.+.+|.||++.... -+-.-|...+..|||.-+..+..
T Consensus 155 ~d~----------~~-------QYi-----~~MN~iFaAqk~~v~IDv~~L~~--~~s~fLqQa~d~T~G~y~~~~~~ 208 (276)
T PF03850_consen 155 PDS----------SS-------QYI-----PLMNCIFAAQKQKVPIDVCKLGG--KDSTFLQQASDITGGIYLKVSKP 208 (276)
T ss_pred CCc----------cH-------HHH-----HHHHHHHHHhcCCceeEEEEecC--CchHHHHHHHHHhCceeeccCcc
Confidence 111 00 111 12345667889999999999876 56667889999999988777653
No 65
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=94.46 E-value=0.77 Score=49.37 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=84.8
Q ss_pred CCCcEEEEEEEccHhHHhhc----hHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCcccc
Q psy14673 312 PQPAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDI 387 (912)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g----~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~ 387 (912)
....-++++||.|.+..++. -++ .+..|..+|+.++.+ +||++.|+..+.+ +.++++
T Consensus 58 kr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~Le~g---~vgVv~Fg~~~~~--------------v~Plt~- 118 (266)
T cd01460 58 KRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTLLEVG---QLGVCSFGEDVQI--------------LHPFDE- 118 (266)
T ss_pred ccCceEEEEEecchhcccccccccHHH-HHHHHHHHHHhCcCC---cEEEEEeCCCceE--------------eCCCCC-
Confidence 34688999999998754432 244 455777788888776 7999999986532 111111
Q ss_pred CCCCCCCcccchhHhHHHHHHHHHhCCc-cccCCCCCCCcHHHHHHHHHHhhcCC-----C----CEEEEEecCCCCCCC
Q psy14673 388 FLPSPENILVNLSECYDMIVDLLKQLPG-KFKDSLDSGSALGPALQAAFKLLQPT-----G----GRITIFQTCLPNRGP 457 (912)
Q Consensus 388 f~p~~~~~lv~l~e~~~~i~~lL~~L~~-~~~~~~~~~~~~G~AL~~A~~ll~~~-----G----GrI~~f~~g~pt~Gp 457 (912)
++ .. ...++.+.. .| ....+.+|.||..|..+++.. + .-|+++++|-|..-.
T Consensus 119 ------d~--------~~-~a~~~~l~~~~f---~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e 180 (266)
T cd01460 119 ------QF--------SS-QSGPRILNQFTF---QQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSE 180 (266)
T ss_pred ------Cc--------hh-hHHHHHhCcccC---CCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCc
Confidence 11 11 122232321 11 224467999999999988643 3 345555555422110
Q ss_pred CcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCC--ccChhhhcccccCC
Q psy14673 458 GALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQ--YVDLATLSGVSKFS 520 (912)
Q Consensus 458 G~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~--~~~l~~l~~l~~~T 520 (912)
|. -+.++.+|.+.||.|-.++.-.. .-.|..|+.....+
T Consensus 181 ~~------------------------~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~ 221 (266)
T cd01460 181 GA------------------------QKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKN 221 (266)
T ss_pred cH------------------------HHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCC
Confidence 00 13457888999988877775442 33454554444333
No 66
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=94.10 E-value=0.48 Score=48.81 Aligned_cols=143 Identities=16% Similarity=0.188 Sum_probs=81.0
Q ss_pred EEEEEEEccHhHHhh----c--hHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 316 MYLFLLDVSQIAAQS----G--YLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 316 ~~vFvID~s~~a~~~----g--~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
-++|+||+|.+.... + -++.+++++...+..+......+|++++|++..+-+ .
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~~---------------------~ 62 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGDFRRY---------------------D 62 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCcccc---------------------C
Confidence 478999999875421 1 356677777776665443222369988885542110 0
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH-hhcC--C------CCEEEEEecCCCCCCCCcc
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK-LLQP--T------GGRITIFQTCLPNRGPGAL 460 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~-ll~~--~------GGrI~~f~~g~pt~GpG~l 460 (912)
| +. +..+..+++.+.. ...+.++.||..|+. +++. . +.-||++++|.++-. .
T Consensus 63 ~--------~~--~~~v~~~~~~~~p------~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~-~-- 123 (199)
T cd01457 63 N--------VN--SSKVDQLFAENSP------DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDK-D-- 123 (199)
T ss_pred C--------cC--HHHHHHHHhcCCC------CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcH-H--
Confidence 1 11 4455566655431 355789999998874 3332 1 356788888876521 1
Q ss_pred cCCCCCCCCCCCCCCCCCchHHHHHHHHH---HHh-hCCcEEEEEEecCCccChhhhcccccC
Q psy14673 461 QSRENPNQRSNDDPPHMNPATDFYKKIAL---ECT-SFYIAVDLFILNSQYVDLATLSGVSKF 519 (912)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~fY~~La~---~~~-~~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (912)
...+.|.. ++. ..++++.++.++.+.-+...|..|...
T Consensus 124 ---------------------~~~~~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~ 165 (199)
T cd01457 124 ---------------------AVERVIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQ 165 (199)
T ss_pred ---------------------HHHHHHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHH
Confidence 11111211 111 147888888887766565555555543
No 67
>TIGR00627 tfb4 transcription factor tfb4. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.68 E-value=2.3 Score=45.97 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCcHHHHHHHHHHhhcC----------CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHh
Q psy14673 423 SGSALGPALQAAFKLLQP----------TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECT 492 (912)
Q Consensus 423 ~~~~~G~AL~~A~~ll~~----------~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~ 492 (912)
..+.+..||..|+-.+.. ..+||+++..++ +... .-.=+-+....|.
T Consensus 117 ~~s~lagals~ALcyinr~~~~~~~~~~~~~RIlii~~s~-----------~~~~------------qYi~~mn~Ifaaq 173 (279)
T TIGR00627 117 SRTVLAGALSDALGYINRSEQSETASEKLKSRILVISITP-----------DMAL------------QYIPLMNCIFSAQ 173 (279)
T ss_pred ccccchhHHHhhhhhhcccccccccCcCCcceEEEEECCC-----------CchH------------HHHHHHHHHHHHH
Confidence 456688888888877632 247999997742 1100 0011236777899
Q ss_pred hCCcEEEEEEecCCccChhhhcccccCCCceEEecC
Q psy14673 493 SFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIP 528 (912)
Q Consensus 493 ~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~ 528 (912)
+.+|.||++..+.+ -+..-+..+|+.|||.-....
T Consensus 174 k~~I~Idv~~L~~e-~~~~~lqQa~~~TgG~Y~~~~ 208 (279)
T TIGR00627 174 KQNIPIDVVSIGGD-FTSGFLQQAADITGGSYLHVK 208 (279)
T ss_pred HcCceEEEEEeCCc-cccHHHHHHHHHhCCEEeccC
Confidence 99999999988654 467889999999999544443
No 68
>KOG4407|consensus
Probab=92.54 E-value=0.23 Score=61.52 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=7.3
Q ss_pred ccceeEEEEecCCc
Q psy14673 554 GFESVMRIRCTKGM 567 (912)
Q Consensus 554 g~~a~l~vr~S~gl 567 (912)
||--.+++-+-+|.
T Consensus 927 gWly~~q~~SkkGk 940 (1973)
T KOG4407|consen 927 GWLYVLQSSSKKGK 940 (1973)
T ss_pred cceeeeeecccCCc
Confidence 45555555555553
No 69
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=92.25 E-value=7.3 Score=39.67 Aligned_cols=96 Identities=11% Similarity=0.040 Sum_probs=62.4
Q ss_pred HHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhc-C--CCC-EEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCC
Q psy14673 403 YDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQ-P--TGG-RITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMN 478 (912)
Q Consensus 403 ~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~-~--~GG-rI~~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~ 478 (912)
.+.+..+|+.+.-.+.. ..++ .||..|++-|+ . ... -||++++|--|.| .+.
T Consensus 74 ~~~l~~~l~~~q~g~ag---~~Ta--dAi~~av~rl~~~~~a~~kvvILLTDG~n~~~--~i~----------------- 129 (191)
T cd01455 74 LETLKMMHAHSQFCWSG---DHTV--EATEFAIKELAAKEDFDEAIVIVLSDANLERY--GIQ----------------- 129 (191)
T ss_pred HHHHHHHHHhcccCccC---ccHH--HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCC--CCC-----------------
Confidence 35777888887643322 2233 88888888885 4 223 5566666654432 121
Q ss_pred chHHHHHHH-HHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCC
Q psy14673 479 PATDFYKKI-ALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 479 ~~~~fY~~L-a~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
| .++ |..+.+.||-|..+.++. .|-.++..+++.|||.-|...+
T Consensus 130 P-----~~aAa~lA~~~gV~iytIgiG~--~d~~~l~~iA~~tgG~~F~A~d 174 (191)
T cd01455 130 P-----KKLADALAREPNVNAFVIFIGS--LSDEADQLQRELPAGKAFVCMD 174 (191)
T ss_pred h-----HHHHHHHHHhCCCEEEEEEecC--CCHHHHHHHHhCCCCcEEEeCC
Confidence 1 344 456677898888877765 3667799999999999988754
No 70
>KOG2807|consensus
Probab=91.22 E-value=3.7 Score=44.19 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=99.7
Q ss_pred CcEEEEEEEccHhHHhhc----hHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccC
Q psy14673 314 PAMYLFLLDVSQIAAQSG----YLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 388 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g----~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f 388 (912)
-...+.|||+|....+.. .+..+...+...+.. ...|+-..||||+- +++.+ -.++|+
T Consensus 60 iRhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~---------k~g~A----~~lt~l---- 122 (378)
T KOG2807|consen 60 IRHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISI---------KDGKA----DRLTDL---- 122 (378)
T ss_pred heeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEE---------ecchh----hHHHHh----
Confidence 456788999998766654 345555555555543 34466568888874 22211 122222
Q ss_pred CCCCCCcccchhHh-HHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCC----EEEEEecCCCCCCCCcccCC
Q psy14673 389 LPSPENILVNLSEC-YDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG----RITIFQTCLPNRGPGALQSR 463 (912)
Q Consensus 389 ~p~~~~~lv~l~e~-~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GG----rI~~f~~g~pt~GpG~l~~~ 463 (912)
..+ +..|.. |..+. .-.....+-.||+.|...|+.+-| .|++..++..|.-||-+
T Consensus 123 -----------tgnp~~hI~a-L~~~~-----~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi--- 182 (378)
T KOG2807|consen 123 -----------TGNPRIHIHA-LKGLT-----ECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDI--- 182 (378)
T ss_pred -----------cCCHHHHHHH-Hhccc-----ccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccH---
Confidence 111 222222 22222 234456788999999999998532 56777787888877654
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCCCCCCCchhHHHHHH
Q psy14673 464 ENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDR 543 (912)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~ 543 (912)
|+. -..+.+..|-|.++..+.+ +..-+.||+.|||..+ . ..|...|..
T Consensus 183 --------------------~~t-I~~lk~~kIRvsvIgLsaE---v~icK~l~kaT~G~Y~-V-------~lDe~Hlke 230 (378)
T KOG2807|consen 183 --------------------YET-IDKLKAYKIRVSVIGLSAE---VFICKELCKATGGRYS-V-------ALDEGHLKE 230 (378)
T ss_pred --------------------HHH-HHHHHhhCeEEEEEeechh---HHHHHHHHHhhCCeEE-E-------EeCHHHHHH
Confidence 333 3467778899999887743 5566889999999322 2 233455655
Q ss_pred HHHHh
Q psy14673 544 MFSRY 548 (912)
Q Consensus 544 ~l~~~ 548 (912)
-|...
T Consensus 231 Ll~e~ 235 (378)
T KOG2807|consen 231 LLLEH 235 (378)
T ss_pred HHHhc
Confidence 55443
No 71
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=90.52 E-value=0.99 Score=47.37 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=72.1
Q ss_pred EEEEEEEccHhHHhh-----chHHHHHHHHHHHHhc-CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 316 MYLFLLDVSQIAAQS-----GYLYTVCEVLLNQLKS-MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 316 ~~vFvID~s~~a~~~-----g~l~~~~~si~~~L~~-lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
+.+||||++....+. +.|+.+++++...+.. +-..+...||+|.|++.-.=-. .....-...+++.+++-+
T Consensus 1 ~~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~-~~~~~~~~i~~l~~l~~~-- 77 (224)
T PF03731_consen 1 ATVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNP-DEDSGYENIFVLQPLDPP-- 77 (224)
T ss_dssp EEEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST--TTT-STTEEEEEECC----
T ss_pred CEEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCc-ccccCCCceEEeecCCcc--
Confidence 468999999765421 2356666666666532 2122224899999987532100 001111222333322211
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCc----cccCCCCCCCcHHHHHHHHHHhhcC--C-----CCEEEEEecCCCCCCCC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPG----KFKDSLDSGSALGPALQAAFKLLQP--T-----GGRITIFQTCLPNRGPG 458 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~----~~~~~~~~~~~~G~AL~~A~~ll~~--~-----GGrI~~f~~g~pt~GpG 458 (912)
+-+.|..|.+.+.. ....+......+..||.+|..++.. . .-||++||..--..+
T Consensus 78 ------------~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~-- 143 (224)
T PF03731_consen 78 ------------SAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHE-- 143 (224)
T ss_dssp ------------BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT--
T ss_pred ------------CHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCC--
Confidence 12233333332221 0011334456799999999998874 1 248888886431111
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHH-HHHHHhhCCcEEEEEEe
Q psy14673 459 ALQSRENPNQRSNDDPPHMNPATDFYKK-IALECTSFYIAVDLFIL 503 (912)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~fY~~-La~~~~~~~isvdlf~~ 503 (912)
..+ .-..-.++ .+.++...+|.+++|..
T Consensus 144 ---~~~--------------~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 144 ---DDD--------------ELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp ----CC--------------CHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred ---CHH--------------HHHHHHHhhccccchhcCcceeEeec
Confidence 000 00111111 26778899999999986
No 72
>KOG4274|consensus
Probab=90.05 E-value=1.3 Score=50.88 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=6.1
Q ss_pred CHHHHHHHHHHHH
Q psy14673 669 SLSDAREAFLNVV 681 (912)
Q Consensus 669 ~~~~~r~~l~~~l 681 (912)
++..+-+.|+.|-
T Consensus 705 ~~~Sit~lLntWe 717 (742)
T KOG4274|consen 705 GLSSITDLLNTWE 717 (742)
T ss_pred CcchHHHHHHHHH
Confidence 3344445555553
No 73
>KOG0444|consensus
Probab=87.98 E-value=0.78 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=27.1
Q ss_pred ccccccccccCeEEEEeCCceEEEEecCC
Q psy14673 781 LQLSAERLQATGTYLLNMPDLIIILVRHG 809 (912)
Q Consensus 781 l~Ls~~~l~~~giyLlD~g~~i~i~vg~~ 809 (912)
++|+..+|++.-+||||.|..||||-|..
T Consensus 639 Vpl~~tSLDPRf~FlLD~G~~IyiW~G~~ 667 (1255)
T KOG0444|consen 639 VPLSVTSLDPRFCFLLDAGETIYIWSGYK 667 (1255)
T ss_pred cCccccccCcceEEEEeCCceEEEEeccc
Confidence 66899999999999999999999999965
No 74
>PRK10997 yieM hypothetical protein; Provisional
Probab=87.10 E-value=10 Score=44.28 Aligned_cols=149 Identities=13% Similarity=0.217 Sum_probs=85.4
Q ss_pred cEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCC
Q psy14673 315 AMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN 394 (912)
Q Consensus 315 p~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~ 394 (912)
--+++|||+|.+.. |.-+....++..+|-.+--..+.++++|.|++.+..|.+... .+
T Consensus 324 GpiII~VDtSGSM~--G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~--------------------~g 381 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGP--------------------DG 381 (487)
T ss_pred CcEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCc--------------------cC
Confidence 34789999998653 444444455555554332222238999999998776543211 11
Q ss_pred cccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy14673 395 ILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSN 471 (912)
Q Consensus 395 ~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~ 471 (912)
...+.++|... + ..++.+..||..|...++. ..|-|++++++....
T Consensus 382 --------l~~ll~fL~~~---f----~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~---------------- 430 (487)
T PRK10997 382 --------LEQAIRFLSQS---F----RGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQR---------------- 430 (487)
T ss_pred --------HHHHHHHHHHh---c----CCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCC----------------
Confidence 12233344332 1 4467789999989888865 357888887764211
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCC
Q psy14673 472 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 472 ~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
...++.+.+...-.+.+.-+...+.+.. +-..+..++.. ++.|+.
T Consensus 431 -------~~eel~~~L~~Lk~~~~~rf~~l~i~~~--~~p~l~~ifD~----~W~~d~ 475 (487)
T PRK10997 431 -------LPDELVAKVKELQRQHQHRFHAVAMSAH--GKPGIMRIFDH----IWRFDT 475 (487)
T ss_pred -------ChHHHHHHHHHHHHhcCcEEEEEEeCCC--CCchHHHhcCe----eeEecC
Confidence 1234555555444447777777777642 33334455543 666653
No 75
>KOG2353|consensus
Probab=86.95 E-value=17 Score=46.62 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=80.5
Q ss_pred CCCCccccccccEEEEecc---cccCCCCCCCcEEEEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEcc
Q psy14673 286 DPYRRPEIQSATVEYLATA---DYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDS 362 (912)
Q Consensus 286 d~~~rpEL~~~tvEy~~p~---~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~ 362 (912)
...+++|=...++++--.+ -|+.. ...|--.+|++|+|.. +..-.+..++..+.+.|+.|.++. .|-++||++
T Consensus 195 a~~W~~~~~~~~idl~D~R~r~Wyi~a-At~pKdiviLlD~SgS-m~g~~~~lak~tv~~iLdtLs~~D--fvni~tf~~ 270 (1104)
T KOG2353|consen 195 AAAWFDNNTDNSIDLYDCRNRSWYIQA-ATSPKDIVILLDVSGS-MSGLRLDLAKQTVNEILDTLSDND--FVNILTFNS 270 (1104)
T ss_pred CccCccCCCCCcceeeecccccccccc-cCCccceEEEEecccc-ccchhhHHHHHHHHHHHHhcccCC--eEEEEeecc
Confidence 4455555566677766554 24443 7788999999999975 333357788899999999999988 899999999
Q ss_pred EEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC
Q psy14673 363 AVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP 440 (912)
Q Consensus 363 ~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~ 440 (912)
.++.-. +...+ +++----..++.|.++++.|. .....-+-.|+..|..+|..
T Consensus 271 ~~~~v~-------------pc~~~-------~lvqAt~~nk~~~~~~i~~l~------~k~~a~~~~~~e~aF~lL~~ 322 (1104)
T KOG2353|consen 271 EVNPVS-------------PCFNG-------TLVQATMRNKKVFKEAIETLD------AKGIANYTAALEYAFSLLRD 322 (1104)
T ss_pred ccCccc-------------ccccC-------ceeecchHHHHHHHHHHhhhc------cccccchhhhHHHHHHHHHH
Confidence 876422 11111 111111234556666677664 12233456677777777754
No 76
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=85.29 E-value=42 Score=34.61 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=58.0
Q ss_pred CCcHHHHHHHHHHhhcCC---CCEEEEEecC--CCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEE
Q psy14673 424 GSALGPALQAAFKLLQPT---GGRITIFQTC--LPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAV 498 (912)
Q Consensus 424 ~~~~G~AL~~A~~ll~~~---GGrI~~f~~g--~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isv 498 (912)
.+|.|.||..|..+|... +.|-++=++| +-|.|+.-+ ...-..+...||+|
T Consensus 94 ~Taig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~------------------------~~ard~~~~~GitI 149 (205)
T PF06707_consen 94 RTAIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPV------------------------TSARDAAVAAGITI 149 (205)
T ss_pred CchHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCcc------------------------HHHHHHHHHCCeEE
Confidence 399999999999999863 4555555553 444443222 12233456689999
Q ss_pred EEEEecCCcc----Chhhh--cccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhcc
Q psy14673 499 DLFILNSQYV----DLATL--SGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRK 552 (912)
Q Consensus 499 dlf~~s~~~~----~l~~l--~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~~ 552 (912)
+=+++..+.. +|... ..+..-.|..|..-.+| +.|.+-|++-|.++
T Consensus 150 NgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~--------~df~~AirrKL~rE 201 (205)
T PF06707_consen 150 NGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETARGF--------EDFAEAIRRKLIRE 201 (205)
T ss_pred eeeEecCCCCCccccHHHHHhhhcccCCCceEEEcCCH--------HHHHHHHHHHHHHH
Confidence 9998877655 56554 33333333345544444 34555565555444
No 77
>KOG0443|consensus
Probab=83.90 E-value=2.9 Score=50.36 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=29.1
Q ss_pred ccccccccCeEEEEeCC-ceEEEEecCCCChhH
Q psy14673 783 LSAERLQATGTYLLNMP-DLIIILVRHGTSPAI 814 (912)
Q Consensus 783 Ls~~~l~~~giyLlD~g-~~i~i~vg~~v~~~~ 814 (912)
|+-+-|+.+.+||||+| ..||||+|+.++.+-
T Consensus 277 l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~E 309 (827)
T KOG0443|consen 277 LTKDLLDTEDCYILDCGGGEIFVWKGRQASLDE 309 (827)
T ss_pred hhHHhhccCCeEEEecCCceEEEEeCCCCCHHH
Confidence 78889999999999999 999999999988654
No 78
>KOG3768|consensus
Probab=83.24 E-value=12 Score=43.58 Aligned_cols=48 Identities=15% Similarity=0.331 Sum_probs=32.1
Q ss_pred ccChhhhcccccCCCceEEecCCCCCCCchhHHHHHHHHHHhhhcccccceeEEEEe
Q psy14673 507 YVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC 563 (912)
Q Consensus 507 ~~~l~~l~~l~~~TGG~v~~~~~f~~~~~~~~~~~~~~l~~~l~~~~g~~a~l~vr~ 563 (912)
..|-.-+..+|+.|||+-|..-+ -..+..+|...+.. .-|.++++..|
T Consensus 191 p~Dds~IermCevTGGRSysV~S--------pr~lnqciesLvqk-vQ~gVvv~FE~ 238 (888)
T KOG3768|consen 191 PIDDSVIERMCEVTGGRSYSVVS--------PRQLNQCIESLVQK-VQYGVVVRFEC 238 (888)
T ss_pred CCCchhhHHhhhhcCCceeeeeC--------HHHHHHHHHHHHHh-hccCeEEEeee
Confidence 35667789999999999886643 13455556555544 45666776665
No 79
>KOG2487|consensus
Probab=83.19 E-value=20 Score=37.95 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCC
Q psy14673 484 YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 484 Y~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
|-+.--.|.+.+|.||++...++ -..|...|..|||.....+.
T Consensus 185 ~MNciFaAqKq~I~Idv~~l~~~---s~~LqQa~D~TGG~YL~v~~ 227 (314)
T KOG2487|consen 185 YMNCIFAAQKQNIPIDVVSLGGD---SGFLQQACDITGGDYLHVEK 227 (314)
T ss_pred HHHHHHHHHhcCceeEEEEecCC---chHHHHHHhhcCCeeEecCC
Confidence 44556678899999999998877 34578889999999888765
No 80
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=82.40 E-value=66 Score=33.72 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=63.1
Q ss_pred HHHHHHHhCCccccCCC-CCCCcHHHHHHHHHHhhcCC-------C-----CEEEEEecCCCCCCCCcccCCCCCCCCCC
Q psy14673 405 MIVDLLKQLPGKFKDSL-DSGSALGPALQAAFKLLQPT-------G-----GRITIFQTCLPNRGPGALQSRENPNQRSN 471 (912)
Q Consensus 405 ~i~~lL~~L~~~~~~~~-~~~~~~G~AL~~A~~ll~~~-------G-----GrI~~f~~g~pt~GpG~l~~~~~~~~~~~ 471 (912)
.+...|++|+ |..+. ....+..-+|.+|+.++... + -+.|+...++|..=|= .+
T Consensus 91 ~fl~~L~~I~--f~GGG~e~~a~iaEGLa~AL~~fd~~~~~r~~~~~~~~~khcILI~nSpP~~~p~----~~------- 157 (226)
T PF11265_consen 91 KFLQWLDAIQ--FSGGGFESCAAIAEGLAEALQCFDDFKQMRQQQQQTDVQKHCILICNSPPYRLPV----NE------- 157 (226)
T ss_pred HHHHHHHccC--cCCCCcccchhHHHHHHHHHHHhcchhhhccccCcccccceEEEEeCCCCccccc----cC-------
Confidence 3455566664 32333 33344888899999888731 1 2455566666643221 11
Q ss_pred CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEe
Q psy14673 472 DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH 526 (912)
Q Consensus 472 ~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~ 526 (912)
... -..+.++.+|..+.+++|.+.+++- --+..|..|-+..+|....
T Consensus 158 -~~~---~~~~~~d~la~~~~~~~I~LSiisP----rklP~l~~Lfeka~~~~~~ 204 (226)
T PF11265_consen 158 -CPQ---YSGKTCDQLAVLISERNISLSIISP----RKLPSLRSLFEKAKGNPRA 204 (226)
T ss_pred -CCc---ccCCCHHHHHHHHHhcCceEEEEcC----ccCHHHHHHHHhcCCCccc
Confidence 111 1224578999999999999999862 4567778888888887765
No 81
>KOG0444|consensus
Probab=79.73 E-value=3.5 Score=48.41 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=37.6
Q ss_pred hhhcceeeecccCCCCCCccccCCcccCCc-----cccccccccccCeEEEEeCCceEEEEecCCCCh
Q psy14673 750 LSIYPELYPIHTLDQDPTIEWNELQVPIPR-----ILQLSAERLQATGTYLLNMPDLIIILVRHGTSP 812 (912)
Q Consensus 750 ~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~-----~l~Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~ 812 (912)
.-..|+||.+.- | -|.+.+|. ...|.-+-|.+.++|+|||...||||+|+..+.
T Consensus 730 ~p~qpkLYkV~l-----G----mGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~R 788 (1255)
T KOG0444|consen 730 VPEQPKLYKVNL-----G----MGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNR 788 (1255)
T ss_pred CCCCcceEEEcc-----c----cceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchH
Confidence 445899998851 1 12233332 123555667899999999999999999998664
No 82
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=77.60 E-value=37 Score=38.15 Aligned_cols=159 Identities=19% Similarity=0.223 Sum_probs=97.2
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHH---HHHHHH-hcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCE---VLLNQL-KSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~---si~~~L-~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~ 389 (912)
-.+.+.+||+|++.+-.|..--+|+ +|-..+ -..+++. +.||+|+..-. .+-+++
T Consensus 463 ~aAvallvDtS~SM~~eGRw~PmKQtALALhHLv~TrfrGD~---l~~i~Fgr~A~------------~v~v~e------ 521 (652)
T COG4867 463 QAAVALLVDTSFSMVMEGRWLPMKQTALALHHLVCTRFRGDA---LQIIAFGRYAR------------TVTAAE------ 521 (652)
T ss_pred ccceeeeeeccHHHHHhccCCchHHHHHHHHHHHHhcCCCcc---eEEEeccchhc------------ccCHHH------
Confidence 4567889999999887775443443 233333 2356664 89999875421 111111
Q ss_pred CCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCC---CEEEEEecCCCCC----CCCcccC
Q psy14673 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTG---GRITIFQTCLPNR----GPGALQS 462 (912)
Q Consensus 390 p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~G---GrI~~f~~g~pt~----GpG~l~~ 462 (912)
|..++.. ..-.+.+--||..|-.+++... -.|++.+.|-||. |-|.+..
T Consensus 522 --------------------Lt~l~~v----~eqgTNlhhaL~LA~r~l~Rh~~~~~~il~vTDGePtAhle~~DG~~~~ 577 (652)
T COG4867 522 --------------------LTGLAGV----YEQGTNLHHALALAGRHLRRHAGAQPVVLVVTDGEPTAHLEDGDGTSVF 577 (652)
T ss_pred --------------------HhcCCCc----cccccchHHHHHHHHHHHHhCcccCceEEEEeCCCccccccCCCCceEe
Confidence 1222211 2334567788889999887633 5889999999985 3443332
Q ss_pred CCCCCCCCCCCCCCCCchHHH--HHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecC
Q psy14673 463 RENPNQRSNDDPPHMNPATDF--YKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIP 528 (912)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~f--Y~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~ 528 (912)
-+.+. .|-.-| -+.+ ..|.+.|+-|.+|....|.-=..-+..+++.++|+++.-+
T Consensus 578 f~yp~----------DP~t~~~Tvr~~-d~~~r~G~q~t~FrLg~DpgL~~Fv~qva~rv~G~vv~pd 634 (652)
T COG4867 578 FDYPP----------DPRTIAHTVRGF-DDMARLGAQVTIFRLGSDPGLARFIDQVARRVQGRVVVPD 634 (652)
T ss_pred cCCCC----------ChhHHHHHHHHH-HHHHhccceeeEEeecCCHhHHHHHHHHHHHhCCeEEecC
Confidence 21110 111111 1222 3688999999999998885444457889999999998654
No 83
>KOG1883|consensus
Probab=76.10 E-value=1.3 Score=54.71 Aligned_cols=24 Identities=42% Similarity=0.470 Sum_probs=14.2
Q ss_pred HHhhhHHHhhhhhccccCcccccC
Q psy14673 210 QQQQQQQQQQTLNSQFSNLSVNQG 233 (912)
Q Consensus 210 QQQQQQQQQQqqQQQ~~~~~~~~~ 233 (912)
|||+++++|||.|+|.++.++.|.
T Consensus 1441 Qqq~~~~~qqqlqhq~~n~~~vQt 1464 (1517)
T KOG1883|consen 1441 QQQSNHPTQQQLQHQIPNMSMVQT 1464 (1517)
T ss_pred HHHhcchHHHHHHHhccccceeee
Confidence 333344455566677777777763
No 84
>KOG1151|consensus
Probab=74.05 E-value=4.5 Score=45.56 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=3.5
Q ss_pred HHHHHhhc
Q psy14673 432 QAAFKLLQ 439 (912)
Q Consensus 432 ~~A~~ll~ 439 (912)
.-+..||+
T Consensus 350 erqrklLa 357 (775)
T KOG1151|consen 350 ERQRKLLA 357 (775)
T ss_pred HHHHHHHh
Confidence 33444554
No 85
>PF00362 Integrin_beta: Integrin, beta chain; InterPro: IPR002369 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. Integrins are important therapeutic targets in conditions such as atherosclerosis, thrombosis, cancer and asthma []. At the N terminus of the beta subunit is a cysteine-containing domain reminiscent of that found in presenillins and semaphorins, which has hence been termed the PSI domain. C-terminal to the PSI domain is an A-domain, which has been predicted to adopt a Rossmann fold similar to that of the alpha subunit, but with additional loops between the second and third beta strands []. The murine gene Pactolus shares significant similarity with the beta subunit [], but lacks either one or both of the inserted loops. The C-terminal portion of the beta subunit extracellular domain contains an internally disulphide-bonded cysteine-rich region, while the intracellular tail contains putative sites of interaction with a variety of intracellular signalling and cytoskeletal proteins, such as focal adhesion kinase and alpha-actinin respectively []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first 20 amino acids of the beta-subunit cytoplasmic domain are also alpha helical, but the final 25 residues are disordered and, apart from a turn that follows a conserved NPxY motif, appear to lack defined structure, suggesting that this is adopted on effector binding. The two membrane-proximal helices mediate the link between the subunits via a series of hydrophobic and electrostatic contacts. This entry represents the N-terminal portion of the extracellular region of integrin beta subunits.; GO: 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion; PDB: 3VI4_B 3VI3_B 2VDQ_B 3IJE_B 1M1X_B 2VDR_B 3NIF_B 3NID_D 1TYE_F 2Q6W_F ....
Probab=73.27 E-value=1.9e+02 Score=33.65 Aligned_cols=266 Identities=14% Similarity=0.190 Sum_probs=127.1
Q ss_pred CcEEEEEEEccHhHHhh-chHHHHHHHHHHHHhcCCCCCCceEEEEEE-ccEEEEEEcCCCCCCCceeeccCccccC---
Q psy14673 314 PAMYLFLLDVSQIAAQS-GYLYTVCEVLLNQLKSMPGDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMILTDIDDIF--- 388 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~-g~l~~~~~si~~~L~~lp~~~~~~VglITf-d~~V~~y~l~~~~~~~~~~vv~dl~d~f--- 388 (912)
|-=..|++|+|....+. .-|+.+-..|...|..+-.+- |+||=+| |+.|.=|- ...|. .+..+.
T Consensus 102 PvDLYyLmDlS~Sm~ddl~~l~~lg~~l~~~~~~it~~~--~~GfGsfvdK~~~P~~----~~~p~-----~l~~pc~~~ 170 (426)
T PF00362_consen 102 PVDLYYLMDLSYSMKDDLENLKSLGQDLAEEMRNITSNF--RLGFGSFVDKPVMPFV----STTPE-----KLKNPCPSK 170 (426)
T ss_dssp -EEEEEEEE-SGGGHHHHHHHCCCCHHHHHHHHTT-SSE--EEEEEEESSSSSTTTS----T-SSH-----CHHSTSCCT
T ss_pred ceeEEEEeechhhhhhhHHHHHHHHHHHHHHHHhcCccc--eEechhhcccccCCcc----cCChh-----hhcCccccc
Confidence 55578999999864431 123344467888888886555 8999888 44332110 00111 111111
Q ss_pred -----CCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHH--hhc--CCCCEEEEEecCCCC--CCC
Q psy14673 389 -----LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFK--LLQ--PTGGRITIFQTCLPN--RGP 457 (912)
Q Consensus 389 -----~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~--ll~--~~GGrI~~f~~g~pt--~Gp 457 (912)
.|..-+-.++|.+..+.+...+.+.. .-.+-..|+..+=+-+.+|+- .+. ...-||++|++-..- .|-
T Consensus 171 ~~~c~~~~~f~~~l~Lt~~~~~F~~~v~~~~-is~n~D~PEgg~dal~Qa~vC~~~igWr~~a~~llv~~TD~~fH~agD 249 (426)
T PF00362_consen 171 NPNCQPPFSFRHVLSLTDDITEFNEEVNKQK-ISGNLDAPEGGLDALMQAAVCQEEIGWRNEARRLLVFSTDAGFHFAGD 249 (426)
T ss_dssp TS--B---SEEEEEEEES-HHHHHHHHHTS---B--SSSSBSHHHHHHHHHH-HHHHT--STSEEEEEEEESS-B--TTG
T ss_pred CCCCCCCeeeEEeecccchHHHHHHhhhhcc-ccCCCCCCccccchheeeeecccccCcccCceEEEEEEcCCccccccc
Confidence 11111224566666666667676653 223345566666666666542 222 123588888887763 588
Q ss_pred CcccCCCCCCCC-CC-CCCCCCCch----HHHHHHHHHHHhhCCcEEEEEEecCCccChhh-hcccccCCCceEEecCCC
Q psy14673 458 GALQSRENPNQR-SN-DDPPHMNPA----TDFYKKIALECTSFYIAVDLFILNSQYVDLAT-LSGVSKFSSGCIHHIPLY 530 (912)
Q Consensus 458 G~l~~~~~~~~~-~~-~~~~~~~~~----~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~-l~~l~~~TGG~v~~~~~f 530 (912)
|++...-.++.. -| ++...+..+ -.-...|...+.+++|. =||+.+.+..++++ |..+. .|+.+-....
T Consensus 250 g~l~gi~~pnd~~Chl~~~~~y~~~~~~DYPSv~ql~~~l~e~~i~-~IFAVt~~~~~~Y~~L~~~i--~~s~vg~L~~- 325 (426)
T PF00362_consen 250 GKLAGIVKPNDGKCHLDDNGMYTASTEQDYPSVGQLVRKLSENNIN-PIFAVTKDVYSIYEELSNLI--PGSSVGELSS- 325 (426)
T ss_dssp GGGGT--S---SS--BSTTSBBGGGGCS----HHHHHHHHHHTTEE-EEEEEEGGGHHHHHHHHHHS--TTEEEEEEST-
T ss_pred cccceeeecCCCceEECCCCcccccccccCCCHHHHHHHHHHcCCE-EEEEEchhhhhHHHHHhhcC--CCceeccccc-
Confidence 888765433321 12 111122111 12246788888888875 48888877666542 33333 2444444432
Q ss_pred CCCCchhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEEeeceeccC--CCceeeccCCCCCeEEEEEEEec
Q psy14673 531 SGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TDLLALPNVNPDAGYGIQISIDE 603 (912)
Q Consensus 531 ~~~~~~~~~~~~~~l~~~l~~~~g~~a~l~vr~-S~gl~i~~~~G~~~~~~--t~~~~l~~i~~~~si~~~~~~~~ 603 (912)
+ ......+.++-++.+. -...|+... .++++| .+..+|..+. ...-...++....++.|++.++-
T Consensus 326 d---SsNIv~LI~~aY~~i~----s~V~L~~~~~p~~v~v-~y~s~C~~~~~~~~~~~C~~V~iG~~V~F~VtVta 393 (426)
T PF00362_consen 326 D---SSNIVQLIKEAYNKIS----SKVELKHDNAPDGVKV-SYTSNCPNGSTVPGTNECSNVKIGDTVTFNVTVTA 393 (426)
T ss_dssp T---SHTHHHHHHHHHHHHC----TEEEEEECS--TTEEE-EEEEEESSSEEEECCEEECSE-TT-EEEEEEEEEE
T ss_pred C---chhHHHHHHHHHHHHh----heEEEEecCCCCcEEE-EEEEEccCCcccCcCccccCEecCCEEEEEEEEEE
Confidence 1 1223444444444332 233333222 345665 3444443211 12245556777777777777664
No 86
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=72.92 E-value=11 Score=43.45 Aligned_cols=140 Identities=21% Similarity=0.228 Sum_probs=80.5
Q ss_pred CcEEEEEEEccHhHHhhchHHHHHHHHHHHHhc--CCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCC
Q psy14673 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKS--MPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPS 391 (912)
Q Consensus 314 pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~--lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~ 391 (912)
+| ++.|||.|.+. .|..+....++.-+|-. +.+| +++.++.||+.++=|.+....
T Consensus 273 Gp-villlD~SGSM--~G~~e~~AKAvalAl~~~alaen--R~~~~~lF~s~~~~~el~~k~------------------ 329 (437)
T COG2425 273 GP-VILLLDKSGSM--SGFKEQWAKAVALALMRIALAEN--RDCYVILFDSEVIEYELYEKK------------------ 329 (437)
T ss_pred CC-EEEEEeCCCCc--CCcHHHHHHHHHHHHHHHHHHhc--cceEEEEecccceeeeecCCc------------------
Confidence 55 55689999753 34455555555555533 3344 489999999944333332210
Q ss_pred CCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCC
Q psy14673 392 PENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQ 468 (912)
Q Consensus 392 ~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~~~ 468 (912)
. .+..+|+.|...|..+ +-+-.||..|+..++. .++.|++.|+|-+-.
T Consensus 330 -~-----------~~~e~i~fL~~~f~GG----TD~~~~l~~al~~~k~~~~~~adiv~ITDg~~~~------------- 380 (437)
T COG2425 330 -I-----------DIEELIEFLSYVFGGG----TDITKALRSALEDLKSRELFKADIVVITDGEDER------------- 380 (437)
T ss_pred -c-----------CHHHHHHHHhhhcCCC----CChHHHHHHHHHHhhcccccCCCEEEEeccHhhh-------------
Confidence 0 1223444444333333 5677888888888875 568999999875221
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCc-cChhhhccc
Q psy14673 469 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQY-VDLATLSGV 516 (912)
Q Consensus 469 ~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~-~~l~~l~~l 516 (912)
..+|-.+..+...+..+=|.-.+.+... -++..+..-
T Consensus 381 -----------~~~~~~~v~e~~k~~~~rl~aV~I~~~~~~~l~~Isd~ 418 (437)
T COG2425 381 -----------LDDFLRKVKELKKRRNARLHAVLIGGYGKPGLMRISDH 418 (437)
T ss_pred -----------hhHHHHHHHHHHHHhhceEEEEEecCCCCcccceeeee
Confidence 1355555555555555555555555443 455555443
No 87
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=65.64 E-value=2.6e+02 Score=32.26 Aligned_cols=269 Identities=15% Similarity=0.182 Sum_probs=135.7
Q ss_pred CcEEEEEEEccHhHHh-hchHHHHHHHHHHHHhcCCCCCCceEEEEEE-ccEEEEEEcCCCCCCCceeec--cCccccC-
Q psy14673 314 PAMYLFLLDVSQIAAQ-SGYLYTVCEVLLNQLKSMPGDRRTSIAIITY-DSAVHFYSLAEGQTQPSQMIL--TDIDDIF- 388 (912)
Q Consensus 314 pp~~vFvID~s~~a~~-~g~l~~~~~si~~~L~~lp~~~~~~VglITf-d~~V~~y~l~~~~~~~~~~vv--~dl~d~f- 388 (912)
|-=..|+.|+|....+ -.-|+.+...|...|..+-.+- |+||=+| |+.|.=|-.. .|..+.- .+....-
T Consensus 99 PvDLYyLMDlS~SM~ddl~~lk~lg~~L~~~m~~it~n~--rlGfGsFVDK~v~P~~~t----~p~~l~~PC~~~~~~c~ 172 (423)
T smart00187 99 PVDLYYLMDLSYSMKDDLDNLKSLGDDLAREMKGLTSNF--RLGFGSFVDKTVSPFVST----RPEKLENPCPNYNLTCE 172 (423)
T ss_pred ccceEEEEeCCccHHHHHHHHHHHHHHHHHHHHhcccCc--eeeEEEeecCccCCcccC----CHHHhcCCCcCCCCCcC
Confidence 5557799999976443 1235556666777777775555 8999888 6555433211 1111100 0000000
Q ss_pred CCCCCCcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCC-----CCEEEEEecCCCC--CCCCccc
Q psy14673 389 LPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPT-----GGRITIFQTCLPN--RGPGALQ 461 (912)
Q Consensus 389 ~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~-----GGrI~~f~~g~pt--~GpG~l~ 461 (912)
.|..-+-.++|.+..+.+.+.+.+.. ...+...|+..+-+=+.+|+ .-+.. .-||++|++-.+- .|-|+|.
T Consensus 173 p~f~f~~~L~LT~~~~~F~~~V~~~~-iSgN~D~PEgG~DAimQaaV-C~~~IGWR~~a~rllv~~TDa~fH~AGDGkLa 250 (423)
T smart00187 173 PPYGFKHVLSLTDDTDEFNEEVKKQR-ISGNLDAPEGGFDAIMQAAV-CTEQIGWREDARRLLVFSTDAGFHFAGDGKLA 250 (423)
T ss_pred CCcceeeeccCCCCHHHHHHHHhhce-eecCCcCCcccHHHHHHHHh-hccccccCCCceEEEEEEcCCCccccCCccee
Confidence 11111224566666666666666543 22334456666666666663 11222 2489999888775 4888876
Q ss_pred CCCCCCC-CCC-CCCCCCCchH--HH--HHHHHHHHhhCCcEEEEEEecCCccChh-hhcccccCCCceEE-ecCCCCCC
Q psy14673 462 SRENPNQ-RSN-DDPPHMNPAT--DF--YKKIALECTSFYIAVDLFILNSQYVDLA-TLSGVSKFSSGCIH-HIPLYSGK 533 (912)
Q Consensus 462 ~~~~~~~-~~~-~~~~~~~~~~--~f--Y~~La~~~~~~~isvdlf~~s~~~~~l~-~l~~l~~~TGG~v~-~~~~f~~~ 533 (912)
..-.++. .-| ++.-.+..++ +| -..|+.++.+++|.+ ||+.+....+++ +|+.+. .|... .... +
T Consensus 251 GIv~PNDg~CHL~~~g~Yt~s~~~DYPSi~ql~~kL~e~nI~~-IFAVT~~~~~~Y~~Ls~li---pgs~vg~Ls~-D-- 323 (423)
T smart00187 251 GIVQPNDGQCHLDNNGEYTMSTTQDYPSIGQLNQKLAENNINP-IFAVTKKQVSLYKELSALI---PGSSVGVLSE-D-- 323 (423)
T ss_pred eEecCCCCcceeCCCCCcCccCcCCCCCHHHHHHHHHhcCceE-EEEEcccchhHHHHHHHhc---Ccceeeeccc-C--
Confidence 5432221 011 1110111111 11 257888888888854 898888877765 234333 33332 1111 1
Q ss_pred CchhHHHHHHHHHHhhhcccccceeEEEEe-cCCceEEEEeeceeccC--CCceeeccCCCCCeEEEEEEEec
Q psy14673 534 NMSHVYQLDRMFSRYLTRKIGFESVMRIRC-TKGMSIHTFHGNFFVRS--TDLLALPNVNPDAGYGIQISIDE 603 (912)
Q Consensus 534 ~~~~~~~~~~~l~~~l~~~~g~~a~l~vr~-S~gl~i~~~~G~~~~~~--t~~~~l~~i~~~~si~~~~~~~~ 603 (912)
..+.-.|.++-+..+ .-..+|+... +.|++|.-. ..|-.+. ...-+..++.....+.|+.++.-
T Consensus 324 -SsNIv~LI~~aY~~i----~S~V~l~~~~~p~~v~~~y~-s~C~~g~~~~~~~~C~~v~iG~~V~F~v~vta 390 (423)
T smart00187 324 -SSNVVELIKDAYNKI----SSRVELEDNSLPEGVSVTYT-SSCPGGVVGPGTRKCEGVKIGDTVSFEVTVTA 390 (423)
T ss_pred -cchHHHHHHHHHHhh----ceEEEEecCCCCCcEEEEEE-eeCCCCCcccCCcccCCcccCCEEEEEEEEEe
Confidence 122344555444433 2334444442 456665422 2222111 11124557777788888887764
No 88
>KOG4274|consensus
Probab=61.38 E-value=12 Score=43.26 Aligned_cols=6 Identities=0% Similarity=0.401 Sum_probs=2.5
Q ss_pred ceeEEE
Q psy14673 556 ESVMRI 561 (912)
Q Consensus 556 ~a~l~v 561 (912)
|+.++|
T Consensus 632 D~kF~v 637 (742)
T KOG4274|consen 632 DAKFEV 637 (742)
T ss_pred ccceee
Confidence 444444
No 89
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=60.73 E-value=15 Score=34.86 Aligned_cols=95 Identities=15% Similarity=0.209 Sum_probs=60.0
Q ss_pred EEEEEccHhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCccc
Q psy14673 318 LFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILV 397 (912)
Q Consensus 318 vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~lv 397 (912)
+++||+|.+-- ...|..+...|...++.. +. +|-+|.||..|+-.. .+.+.++.
T Consensus 2 ~vaiDtSGSis-~~~l~~fl~ev~~i~~~~--~~--~v~vi~~D~~v~~~~-----------~~~~~~~~---------- 55 (126)
T PF09967_consen 2 VVAIDTSGSIS-DEELRRFLSEVAGILRRF--PA--EVHVIQFDAEVQDVQ-----------VFRSLEDE---------- 55 (126)
T ss_pred EEEEECCCCCC-HHHHHHHHHHHHHHHHhC--CC--CEEEEEECCEeeeee-----------EEeccccc----------
Confidence 68999998632 335777777777777766 23 699999999987421 11110000
Q ss_pred chhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCC
Q psy14673 398 NLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNR 455 (912)
Q Consensus 398 ~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~f~~g~pt~ 455 (912)
+..+ .-..+.++++.++++.+...- ....-|++||+|-+..
T Consensus 56 ------------~~~~----~~~GgGGTdf~pvf~~~~~~~-~~~~~vi~fTDg~~~~ 96 (126)
T PF09967_consen 56 ------------LRDI----KLKGGGGTDFRPVFEYLEENR-PRPSVVIYFTDGEGWP 96 (126)
T ss_pred ------------cccc----ccCCCCCCcchHHHHHHHhcC-CCCCEEEEEeCCCCCC
Confidence 0111 123567888999998887654 3456788999986643
No 90
>PF02905 EBV-NA1: Epstein Barr virus nuclear antigen-1, DNA-binding domain; InterPro: IPR004186 The Epstein-Barr virus (strain GD1) nuclear antigen 1 (EBNA1) binds to and activates DNA replication from the latent origin of replication. The crystal structure of the DNA-binding and dimerization domains were solved [], and it was found that EBNA1 appears to bind DNA via two independent regions, the core and the flanking DNA-binding domains. This DNA-binding domain has a ferredoxin-like fold.; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0006260 DNA replication, 0006275 regulation of DNA replication, 0045893 positive regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1B3T_B 1VHI_B.
Probab=55.35 E-value=35 Score=31.69 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEE
Q psy14673 333 LYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVH 365 (912)
Q Consensus 333 l~~~~~si~~~L~~lp~-~~~~~VglITfd~~V~ 365 (912)
.+.++++|++-+..-|. .++++|-+++||+.|-
T Consensus 112 Ae~vkDAi~Dyi~T~P~PT~~~~Vt~~~Fd~~V~ 145 (146)
T PF02905_consen 112 AECVKDAIRDYIMTRPQPTCNTQVTVCSFDDGVM 145 (146)
T ss_dssp HHHHHHHHHHHHCTS-TTGGGEEEEEEEEEEEE-
T ss_pred HHHHHHHHHHHhcCCCCCCcceEEEEEeCCCCCc
Confidence 45799999999977765 4678999999998774
No 91
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=52.67 E-value=3.7 Score=30.45 Aligned_cols=18 Identities=0% Similarity=-0.391 Sum_probs=11.5
Q ss_pred CcCccCcccccCCCCCCC
Q psy14673 267 NLPEIHEQFLYDRNTEMF 284 (912)
Q Consensus 267 ~~~~~p~~~~~~~~~~~~ 284 (912)
+.|.|++|...|+++..|
T Consensus 23 ~~w~C~~C~~~N~lp~~Y 40 (40)
T PF04810_consen 23 KTWICNFCGTKNPLPPHY 40 (40)
T ss_dssp TEEEETTT--EEE--GGG
T ss_pred CEEECcCCCCcCCCCCCC
Confidence 789999999888766554
No 92
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=50.89 E-value=2.7e+02 Score=28.85 Aligned_cols=182 Identities=16% Similarity=0.250 Sum_probs=90.8
Q ss_pred CCcEEEEEEEccHhHHh----hchHHHHHHHHHHHHhc-CCCCCCceEEEE-EEccEEEEEEcCCCCCCCceeeccCccc
Q psy14673 313 QPAMYLFLLDVSQIAAQ----SGYLYTVCEVLLNQLKS-MPGDRRTSIAII-TYDSAVHFYSLAEGQTQPSQMILTDIDD 386 (912)
Q Consensus 313 ~pp~~vFvID~s~~a~~----~g~l~~~~~si~~~L~~-lp~~~~~~VglI-Tfd~~V~~y~l~~~~~~~~~~vv~dl~d 386 (912)
.|...+.+||.--...+ .|-..-+.+.|.-.|.. +.-+...||++| .|+..+.+.--+.. ...-+++.|.
T Consensus 19 spslL~viid~~p~~W~~~~ek~~~~kvl~di~VFLNAhlaf~~~NrVaVva~~s~~~~yLypss~----s~~k~se~e~ 94 (296)
T COG5242 19 SPSLLFVIIDLEPENWELTTEKGSRDKVLNDIVVFLNAHLAFSRNNRVAVVAGYSQGKTYLYPSSE----SALKASESEN 94 (296)
T ss_pred CCceEEEEEecChhhcccccccccHHHHHHHHHHHHHHHHhhccCCeEEEEEeccCceEEeccCcc----hhhhhhcccC
Confidence 35666667788655443 34444455555554422 332333478876 56666654322211 1122333221
Q ss_pred cCCCCC-CCcccchhHh-HHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC------CCCEEEEEecCCCCCCCC
Q psy14673 387 IFLPSP-ENILVNLSEC-YDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP------TGGRITIFQTCLPNRGPG 458 (912)
Q Consensus 387 ~f~p~~-~~~lv~l~e~-~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~------~GGrI~~f~~g~pt~GpG 458 (912)
- --.. -+-+-++.|- -+.|..+++. +.......-.|-|++.++...-. .-+||++|+.+ |
T Consensus 95 t-r~sd~yrrfr~vde~~i~eiyrl~e~-----~~k~sqr~~v~gams~glay~n~~~~e~slkSriliftls----G-- 162 (296)
T COG5242 95 T-RNSDMYRRFRNVDETDITEIYRLIEH-----PHKNSQRYDVGGAMSLGLAYCNHRDEETSLKSRILIFTLS----G-- 162 (296)
T ss_pred c-cchhhhhhhcccchHHHHHHHHHHhC-----cccccceeehhhhhhhhHHHHhhhcccccccceEEEEEec----C--
Confidence 0 0000 0111222221 1112222221 11223345678888888877643 34899999872 2
Q ss_pred cccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccCCCceEEecCC
Q psy14673 459 ALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPL 529 (912)
Q Consensus 459 ~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~~~~ 529 (912)
||..- .|+ | |-+---.|-+.||-||+|-+.+. -..|..+|..|||.-...++
T Consensus 163 ----~d~~~-------qYi-p----~mnCiF~Aqk~~ipI~v~~i~g~---s~fl~Q~~daTgG~Yl~ve~ 214 (296)
T COG5242 163 ----RDRKD-------QYI-P----YMNCIFAAQKFGIPISVFSIFGN---SKFLLQCCDATGGDYLTVED 214 (296)
T ss_pred ----chhhh-------hhc-h----hhhheeehhhcCCceEEEEecCc---cHHHHHHhhccCCeeEeecC
Confidence 22111 010 1 11222345567899999976554 34578889999998877765
No 93
>KOG4407|consensus
Probab=46.20 E-value=18 Score=46.04 Aligned_cols=18 Identities=11% Similarity=0.152 Sum_probs=9.4
Q ss_pred CCChhhhHhhhcceeeec
Q psy14673 742 CLPLNSLMLSIYPELYPI 759 (912)
Q Consensus 742 ~~~~~~~~~~iyP~L~~~ 759 (912)
.|.+.++..||=|.|..-
T Consensus 1307 kMEprNLAi~FGPsiVRt 1324 (1973)
T KOG4407|consen 1307 KMEPRNLAIMFGPSIVRT 1324 (1973)
T ss_pred cccccceeEEeccceecc
Confidence 344555555555655443
No 94
>KOG4368|consensus
Probab=45.32 E-value=1.6e+02 Score=34.62 Aligned_cols=9 Identities=22% Similarity=0.397 Sum_probs=5.3
Q ss_pred cCCCceEEe
Q psy14673 518 KFSSGCIHH 526 (912)
Q Consensus 518 ~~TGG~v~~ 526 (912)
..+||.|..
T Consensus 714 PiSGGEVRd 722 (757)
T KOG4368|consen 714 PISGGEVRD 722 (757)
T ss_pred cccCccccc
Confidence 456776653
No 95
>KOG0445|consensus
Probab=40.72 E-value=31 Score=41.07 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=33.6
Q ss_pred ccccccccCeEEEEeCCceEEEEecCCCCh-------hHHhhccCCC
Q psy14673 783 LSAERLQATGTYLLNMPDLIIILVRHGTSP-------AICSGLFGFQ 822 (912)
Q Consensus 783 Ls~~~l~~~giyLlD~g~~i~i~vg~~v~~-------~~~~~lfg~~ 822 (912)
++.+-|.+..+++.|-|..||||.|+.++. ++.+.+||.+
T Consensus 363 pk~~~l~p~eVLvFDFGSEvYVW~Gk~~~~~~~~~A~~lAk~l~~~d 409 (919)
T KOG0445|consen 363 PKCSLLQPKEVLVFDFGSEVYVWHGKEVTLAQRKIAFQLAKHLWNFD 409 (919)
T ss_pred ccccccCcceEEEEecCceEEEEcCccCchHHHHHHHHHHHHHhCCC
Confidence 466788999999999999999999998664 5777888854
No 96
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=39.73 E-value=9.7 Score=48.16 Aligned_cols=9 Identities=11% Similarity=0.183 Sum_probs=4.5
Q ss_pred HhcCccccC
Q psy14673 716 LLKHPAFRI 724 (912)
Q Consensus 716 L~ks~~l~~ 724 (912)
|.|-..|..
T Consensus 692 lsRae~l~~ 700 (808)
T PF09770_consen 692 LSRAELLKQ 700 (808)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 445555543
No 97
>KOG3648|consensus
Probab=38.15 E-value=26 Score=41.11 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=9.2
Q ss_pred ccCHHHHHHHHHHHHH
Q psy14673 647 GADQACIAGLLAKMAV 662 (912)
Q Consensus 647 ~~D~~a~~~llak~a~ 662 (912)
.+|..++.+.+.|.|.
T Consensus 586 ~~~~G~V~sCLYR~AY 601 (1179)
T KOG3648|consen 586 FMPQGAVFSCLYRHAY 601 (1179)
T ss_pred cCccchHHHHHHHHhh
Confidence 4555666666656554
No 98
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=37.23 E-value=11 Score=47.60 Aligned_cols=7 Identities=14% Similarity=-0.045 Sum_probs=0.0
Q ss_pred CceEEEE
Q psy14673 799 PDLIIIL 805 (912)
Q Consensus 799 g~~i~i~ 805 (912)
|...|||
T Consensus 741 ~~~~~vw 747 (808)
T PF09770_consen 741 GDDSYVW 747 (808)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3344444
No 99
>KOG4592|consensus
Probab=33.92 E-value=1.4e+02 Score=35.51 Aligned_cols=12 Identities=17% Similarity=0.681 Sum_probs=6.0
Q ss_pred EEEEEEeeecCC
Q psy14673 613 FQVAVLYTSSKG 624 (912)
Q Consensus 613 iQ~allYt~~~G 624 (912)
.++.++|+...|
T Consensus 537 l~I~~~~~~k~~ 548 (728)
T KOG4592|consen 537 LGICSMYDNKRG 548 (728)
T ss_pred cceeEeeecccC
Confidence 455555554443
No 100
>KOG0608|consensus
Probab=33.60 E-value=9.8e+02 Score=29.33 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=9.1
Q ss_pred hhCCcEEEEEEe
Q psy14673 492 TSFYIAVDLFIL 503 (912)
Q Consensus 492 ~~~~isvdlf~~ 503 (912)
+.+.++|-||..
T Consensus 686 ADn~WVVrLyyS 697 (1034)
T KOG0608|consen 686 ADNEWVVRLYYS 697 (1034)
T ss_pred cCCcceEEEEEE
Confidence 467899999864
No 101
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=27.13 E-value=85 Score=32.87 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCCCcHHHHHHHHHHhhcCC---CCEEEEEecCC
Q psy14673 421 LDSGSALGPALQAAFKLLQPT---GGRITIFQTCL 452 (912)
Q Consensus 421 ~~~~~~~G~AL~~A~~ll~~~---GGrI~~f~~g~ 452 (912)
-...+.+|.||..+...+... +.-|+++.+|.
T Consensus 126 ~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~ 160 (222)
T PF05762_consen 126 FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGW 160 (222)
T ss_pred CCCccHHHHHHHHHHHHhhcccccCcEEEEEeccc
Confidence 346788999999998888632 45677777763
No 102
>KOG3648|consensus
Probab=25.54 E-value=38 Score=39.86 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhCCcEEE
Q psy14673 482 DFYKKIALECTSFYIAVD 499 (912)
Q Consensus 482 ~fY~~La~~~~~~~isvd 499 (912)
..|++--.+|+..-.+.|
T Consensus 562 ~LY~~C~~~A~~~C~~~~ 579 (1179)
T KOG3648|consen 562 VLYRKCQGDASRLCHTHG 579 (1179)
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 345544444444333333
No 103
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=24.59 E-value=3.4e+02 Score=30.47 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=49.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhHhHHHHHHHH
Q psy14673 331 GYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLL 410 (912)
Q Consensus 331 g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~~~lv~l~e~~~~i~~lL 410 (912)
.+++.+-+-|.++++.-|++.|.-|-+-+.++.|.+ .++| .=++.|+ .+ +..++
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~i-------------SI~D---~G~gIPk------~d----~~~iF 395 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEI-------------SISD---QGLGIPK------ED----LEKIF 395 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEE-------------EEcc---CCCCCCc------hh----HHHHH
Confidence 357777778889999999987433333333333322 1222 2233331 11 12233
Q ss_pred HhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEE
Q psy14673 411 KQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITI 447 (912)
Q Consensus 411 ~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~ 447 (912)
+..-..-..-.|..-.+|..|.+|-.+.+..||+|-+
T Consensus 396 drfyRvdkARsR~~gGTGLGLaIakeiV~~hgG~iWA 432 (459)
T COG5002 396 DRFYRVDKARSRKMGGTGLGLAIAKEIVQAHGGRIWA 432 (459)
T ss_pred HHHhhhhhhhhhcCCCCchhHHHHHHHHHHhCCeEEE
Confidence 3221111112244556888888899999999988754
No 104
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=22.74 E-value=7.4e+02 Score=25.56 Aligned_cols=144 Identities=17% Similarity=0.230 Sum_probs=81.9
Q ss_pred EEEEEEccHhHH---hhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCC
Q psy14673 317 YLFLLDVSQIAA---QSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPE 393 (912)
Q Consensus 317 ~vFvID~s~~a~---~~g~l~~~~~si~~~L~~lp~~~~~~VglITfd~~V~~y~l~~~~~~~~~~vv~dl~d~f~p~~~ 393 (912)
..+|||.|.+.. ++|..+.+.+.+...=..+.++. .|=+.+|++..+= +.+
T Consensus 4 V~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~DdDG--~i~v~~Fs~~~~~--------------~~~---------- 57 (200)
T PF10138_consen 4 VYLVLDISGSMRPLYKDGTVQRVVERILALAAQFDDDG--EIDVWFFSTEFDR--------------LPD---------- 57 (200)
T ss_pred EEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhcCCCC--ceEEEEeCCCCCc--------------CCC----------
Confidence 568999997643 57888888888777655665554 4666666554321 111
Q ss_pred CcccchhHhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcC-----CCCEEEEEecCCCCCCCCcccCCCCCCC
Q psy14673 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP-----TGGRITIFQTCLPNRGPGALQSRENPNQ 468 (912)
Q Consensus 394 ~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~-----~GGrI~~f~~g~pt~GpG~l~~~~~~~~ 468 (912)
+.+.+....|..+...+... .....+...+|++.++.--.. ...-|+.+|+|.|+- +
T Consensus 58 ---vt~~~~~~~v~~~~~~~~~~---~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~-------~----- 119 (200)
T PF10138_consen 58 ---VTLDNYEGYVDELHAGLPDW---GRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD-------R----- 119 (200)
T ss_pred ---cCHHHHHHHHHHHhcccccc---CCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc-------h-----
Confidence 12233344444444333221 333448889999988886642 123566667766542 1
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccChhhhcccccC
Q psy14673 469 RSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKF 519 (912)
Q Consensus 469 ~~~~~~~~~~~~~~fY~~La~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~ 519 (912)
+=-+++-.+++...|-.-...++.+..++ |..|-.+
T Consensus 120 -------------~~~~~~i~~as~~pifwqFVgiG~~~f~f--L~kLD~l 155 (200)
T PF10138_consen 120 -------------RAIEKLIREASDEPIFWQFVGIGDSNFGF--LEKLDDL 155 (200)
T ss_pred -------------HHHHHHHHhccCCCeeEEEEEecCCcchH--HHHhhcc
Confidence 11245555667777777777777666443 4444443
No 105
>KOG4140|consensus
Probab=20.59 E-value=40 Score=38.46 Aligned_cols=75 Identities=8% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCccCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCcCccccccchhHH-------
Q psy14673 139 QQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQQQQ------- 211 (912)
Q Consensus 139 qQqQQQQQQQQQq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qqqqQQQQQQ------- 211 (912)
+++|+++++++.+.++.+........ .-+...-+.|............... +.+++|++|+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~a~~~s~~p-------~~~~~~~~~pg~~~n~~~~a~~~~~----~i~~~q~~q~~~s~~s~~ 536 (659)
T KOG4140|consen 468 RIPHRTNSVPTSQCSYLAAATVSTSP-------VLLSSTCISPGTTLNAQPAASGAMD----PVCSMQSRQVSSSSSSPS 536 (659)
T ss_pred hchhhhcccccccchHHHHhhhccCc-------ccccccccCCCcccccCcccccccc----HHHHHHHHhhhcccCCCC
Q ss_pred -------hhhHHHhhhhhcc
Q psy14673 212 -------QQQQQQQQTLNSQ 224 (912)
Q Consensus 212 -------QQQQQQQQqqQQQ 224 (912)
+|+-.-|++.|++
T Consensus 537 tp~~~~s~~~~~~~~~~q~~ 556 (659)
T KOG4140|consen 537 TPSGLSSVPSSPMSRKPQKL 556 (659)
T ss_pred CcccccccccchhhhhhHhh
No 106
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=20.18 E-value=5.1e+02 Score=30.72 Aligned_cols=81 Identities=16% Similarity=0.043 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHhhcC---CCCEEEEEecCCCCCCCCcccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHhhCCcEEEE
Q psy14673 424 GSALGPALQAAFKLLQP---TGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDL 500 (912)
Q Consensus 424 ~~~~G~AL~~A~~ll~~---~GGrI~~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~fY~~La~~~~~~~isvdl 500 (912)
.+-.|+||..|..-|-. .--=+|+|++|-||-= +.-..+. .-.+-| .-..++.+.||.|=-
T Consensus 532 ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd~-d~YEgr~--------------gIeDTr-~AV~eaRk~Gi~VF~ 595 (637)
T COG4548 532 YTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPNDF-DHYEGRF--------------GIEDTR-EAVIEARKSGIEVFN 595 (637)
T ss_pred cccccHHHHHHHHHHhcCcccceEEEEecCCCcccc-ccccccc--------------chhhHH-HHHHHHHhcCceEEE
Confidence 35589999999886643 2245788999987631 0000010 011122 345567888886543
Q ss_pred EEecCCccChhhhcccccCCCceEE
Q psy14673 501 FILNSQYVDLATLSGVSKFSSGCIH 525 (912)
Q Consensus 501 f~~s~~~~~l~~l~~l~~~TGG~v~ 525 (912)
+..+. ..+..+...||-..|
T Consensus 596 Vtld~-----ea~~y~p~~fgqngY 615 (637)
T COG4548 596 VTLDR-----EAISYLPALFGQNGY 615 (637)
T ss_pred EEecc-----hhhhhhHHHhccCce
Confidence 33222 334555556665555
Done!