RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14673
(912 letters)
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 513 bits (1323), Expect = e-168
Identities = 230/916 (25%), Positives = 400/916 (43%), Gaps = 109/916 (11%)
Query: 88 PQQFQRPQQQNANHSQQTFRMPPNTYSQSSKTAPFNNGLTPLTNASLYQQQQQQQQQQQQ 147
PQ Q QNA QQ + P ++ + G+ P QQQ Q+Q
Sbjct: 10 PQA-QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68
Query: 148 QQQPIPNIPPLPNSQQ--------NSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSL 199
Q I N ++ QP + + + QP P+ ++
Sbjct: 69 LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128
Query: 200 NQAGYQQQQQQQQQQQQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRD--------I 251
Q Q + + + + P +L N
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 188
Query: 252 LPATKVEPPPIRLP-----QNLPEIHE---------------------------QFLYDR 279
+P +LP + +++ F+
Sbjct: 189 VPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQG 248
Query: 280 N---------------------TEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYL 318
Y R EI+ A +EY+A +YT+R P PA Y
Sbjct: 249 RRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYC 307
Query: 319 FLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQT--- 374
FL+DVSQ + +SG L T LL L S+P D RT I+I+ D+A+H++ +
Sbjct: 308 FLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNE 367
Query: 375 ----QPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPA 430
Q + M + D+++ FLP P +++V+L C I LL ++P F+ +L + ALGPA
Sbjct: 368 ESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPA 427
Query: 431 LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN--DDPPHMNPATDFYKKIA 488
L++A+ L+ GG+I + LPN G G LQ R + + ++ FYK
Sbjct: 428 LKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFT 487
Query: 489 LECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRY 548
++C+ I VDLF+ + Y+D+A+LS +S+F++G H P +SGKN + + + F+++
Sbjct: 488 IDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKH 547
Query: 549 LTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHI 608
++ E+VMR R + G+ + F+G+FF RS+DL A + D Y ++++DE++
Sbjct: 548 ISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMA- 606
Query: 609 QYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQH 668
Y QVAVL + + RRIR+ TL +P ++ +V ADQ IA AV+++L
Sbjct: 607 DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNS 666
Query: 669 SLSDAREAFLNVVCDVLSTYKMTQAGHLTG---SLLAPSSLKLLPLYVLALLKHPAFRIG 725
SL DAR V D+L+TYK T L ++L++ PL + +L KH AFR G
Sbjct: 667 SLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSG 726
Query: 726 QSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNEL------QVPIPR 779
D R A+ ++ LPL L+ +IYP++Y +H + + + + +P+
Sbjct: 727 -IVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQ 785
Query: 780 ILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLE- 838
+ ++ + G YL++ + + + + PA+ +FG Q + +P E+P +E
Sbjct: 786 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVEN 845
Query: 839 TQLSLKLNSFISYLNDDKAYVS--PVKVIK--------------DSSPDRMEFYDKLIED 882
++ + ++ + I+ L + ++ + +++ + + R+ L+ED
Sbjct: 846 SEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVED 905
Query: 883 KNAGGMAYYEFLLRIR 898
K +Y EFL ++
Sbjct: 906 KILNNESYREFLQIMK 921
Score = 56.8 bits (136), Expect = 3e-08
Identities = 34/166 (20%), Positives = 44/166 (26%), Gaps = 14/166 (8%)
Query: 102 SQQTFRMPPNTYSQSSKTAPFNNGLTPLTNASLYQQQQQQQQQQQQQQQPIPNIPPLPNS 161
S R+ P Q + A L Q Q P P
Sbjct: 2 SHHKKRVYPQAQLQYGQNAT---PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58
Query: 162 QQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQ------QQQQQQQ 215
QQ + Q + Q +A P ++ Y Q Q QQQQ
Sbjct: 59 QQFLTPAQEQLH-----QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113
Query: 216 QQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRDILPATKVEPPP 261
Q + ++ Q M M P DLL PPP
Sbjct: 114 QPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPP 159
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 489 bits (1259), Expect = e-161
Identities = 329/637 (51%), Positives = 450/637 (70%), Gaps = 3/637 (0%)
Query: 264 LPQNLPEIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDV 323
L + ++ E+F+Y+ T +G+P++RPE+Q++TVE++A++DY PPQPA+YLF+LDV
Sbjct: 111 LCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYM-LRPPQPAVYLFVLDV 169
Query: 324 SQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTD 383
S A ++GYL +C+ LL L +PGD RT I +T+DS +HFY+L EG +QP +I++D
Sbjct: 170 SHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSD 229
Query: 384 IDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGG 443
IDD+FLP+P+++LVNL E ++I DLL LP F ++ ++ SALGPALQAAFKL+ PTGG
Sbjct: 230 IDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTGG 289
Query: 444 RITIFQTCLPNRGPGALQSRENPNQR-SNDDPPHMNPATDFYKKIALECTSFYIAVDLFI 502
R+++FQT LP+ G G LQSRE+PNQR S H+ PATDFYKK+AL+C+ AVDLF+
Sbjct: 290 RVSVFQTQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFL 349
Query: 503 LNSQYVDLATLSGVSKFSSGCIHHIPLYSG-KNMSHVYQLDRMFSRYLTRKIGFESVMRI 561
L+SQY DLA+L+ +SK+S+GCI++ P + N S +L + RYLTRKIGFE+VMRI
Sbjct: 350 LSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRI 409
Query: 562 RCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTS 621
RCTKG+S+HTFHGNFFVRSTDLL+L N+NPDAG+ +Q+SI+E+LT CFQ A+LYTS
Sbjct: 410 RCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTS 469
Query: 622 SKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVV 681
SKG+RRIRVHTLCLPVVS++ DV G D LLA MAVDRS+ SLSDAR+A +N V
Sbjct: 470 SKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAV 529
Query: 682 CDVLSTYKMTQAGHLTGSLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMK 741
D LS Y T + +L+APSSLKL PLYVLALLK AFR G STRLDDR++AM ++K
Sbjct: 530 VDSLSAYGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIK 589
Query: 742 CLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDL 801
PL LM I+P LY I L + + N+ VP P + +LSAE+L G +L++ +
Sbjct: 590 SQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSV 649
Query: 802 IIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSP 861
I V G + G+ + A +P+ + LP+L+T S + SFI++L D +
Sbjct: 650 FYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPI 709
Query: 862 VKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIR 898
+ ++KD SP + EF+ LIED+ +YYEFLL ++
Sbjct: 710 LHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQ 746
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 470 bits (1211), Expect = e-154
Identities = 172/638 (26%), Positives = 300/638 (47%), Gaps = 22/638 (3%)
Query: 273 EQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRD-PPQPAMYLFLLDVSQIAAQSG 331
F + + D Y +PE+ + EY+AT DY + PP P ++F++DVS ++G
Sbjct: 135 FYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNG 194
Query: 332 YLYTVCEVLLNQLKSMPGD-----RRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDD 386
+ +CE L L+ +P + + ITY+ +HF+++ QP M++TD+ +
Sbjct: 195 LVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVGE 254
Query: 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQP--TGGR 444
+F+P + LVN E +I +LL Q+P F DS ++ + P +QA + L+ G+
Sbjct: 255 VFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCPGK 314
Query: 445 ITIFQTCLPN-RGPGALQSRENPN-QRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFI 502
+ IF + LP PG L++R++ ++ + P T+ Y +A +C + +V LF+
Sbjct: 315 LFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFL 374
Query: 503 LNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIR 562
SQYVD+A+L V + + G ++ + Q + +KIGF+++MR+R
Sbjct: 375 FPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQ--QFLNDLRNDIEKKIGFDAIMRVR 432
Query: 563 CTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSS 622
+ G F G + +T + + ++ D ++ D+ L+ A Q AVLYT+
Sbjct: 433 TSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHDDKLSEDSGALIQCAVLYTTI 492
Query: 623 KGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVC 682
G RR+R+H L L S + D+ + + AK A L L RE +N
Sbjct: 493 SGQRRLRIHNLGLNCSSQLADLYKSCETDALINFFAKSAFKAVLHQPLKVIREILVNQTA 552
Query: 683 DVLSTYKMTQA-GHLTGSLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMK 741
+L+ Y+ A L+ P S+K+LP+Y+ LLK+ D+R + +
Sbjct: 553 HMLACYRKNCASPSAASQLILPDSMKVLPVYMNCLLKNCVLLSRPEISTDERAYQRQLVM 612
Query: 742 CLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDL 801
+ + L YP+L PIHTLD T +P ++ S RL G +LL
Sbjct: 613 TMGVADSQLFFYPQLLPIHTLDVKST--------MLPAAVRCSESRLSEEGIFLLANGLH 664
Query: 802 IIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSP 861
+ + + + P + G+F S A + + LP++ S +L + + + Y
Sbjct: 665 MFLWLGVSSPPELIQGIFNVPSFAHINTDMTLLPEVGNPYSQQLRMIMGIIQQKRPYSMK 724
Query: 862 VKVIKDSSPDRMEFYDKLIEDKNA-GGMAYYEFLLRIR 898
+ ++K M F L+EDK GG +Y +FL +
Sbjct: 725 LTIVKQREQPEMVFRQFLVEDKGLYGGSSYVDFLCCVH 762
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle
transport, cytoplasm, endoplasmic reticulum, ER-golgi
transport, golgi apparatus; 2.35A {Homo sapiens}
Length = 766
Score = 463 bits (1191), Expect = e-151
Identities = 175/646 (27%), Positives = 302/646 (46%), Gaps = 22/646 (3%)
Query: 265 PQNLPEIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTV-RDPPQPAMYLFLLDV 323
+ F + +T D Y RPE+ + E+LAT DY P P ++F++DV
Sbjct: 123 SCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDV 182
Query: 324 SQIAAQSGYLYTVCEVLLNQLKSMP-----GDRRTSIAIITYDSAVHFYSLAEGQTQPSQ 378
S A ++G + +CE L + L +P + + +TY+ +HFY++ QP
Sbjct: 183 SYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQM 242
Query: 379 MILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLL 438
M+++D+ D+F+P + LVN++E +I LL Q+P F D+ ++ + P +QA + L
Sbjct: 243 MVVSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEAL 302
Query: 439 Q--PTGGRITIFQTCLPN-RGPGALQSRENPNQ-RSNDDPPHMNPATDFYKKIALECTSF 494
+ G++ +F T LP PG L++R++ ++ + P T Y+ +A EC +
Sbjct: 303 KAAECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQ 362
Query: 495 YIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIG 554
VDLF+ +QYVD+ATLS V + + G ++ + +N + R + + +G
Sbjct: 363 GCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQE--RFLSDLRRDVQKVVG 420
Query: 555 FESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQ 614
F++VMR+R + G+ F G F++ +T + L ++ D ++ D+ L A Q
Sbjct: 421 FDAVMRVRTSTGIRAVDFFGAFYMSNTTDVELAGLDGDKTVTVEFKHDDRLNEESGALLQ 480
Query: 615 VAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAR 674
A+LYTS G RR+R+H L L + + D+ + + +AK A L + R
Sbjct: 481 CALLYTSCAGQRRLRIHNLALNCCTQLADLYRNCETDTLINYMAKFAYRGVLNSPVKAVR 540
Query: 675 EAFLNVVCDVLSTYKMTQA-GHLTGSLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDR 733
+ + +L+ Y+ A G L+ P +KLLP+Y+ +LK + G DDR
Sbjct: 541 DTLITQCAQILACYRKNCASPSSAGQLILPECMKLLPVYLNCVLKSDVLQPGAEVTTDDR 600
Query: 734 LFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGT 793
+ + + + + YP L P+ + P ++ S ERL
Sbjct: 601 AYVRQLVTSMDVTETNVFFYPRLLPLTKSPVE--------STTEPPAVRASEERLSNGDI 652
Query: 794 YLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLN 853
YLL + + V + LF S +Q+ L LP L+ LS K+ I L
Sbjct: 653 YLLENGLNLFLWVGASVQQGVVQSLFSVSSFSQITSGLSVLPVLDNPLSKKVRGLIDSLR 712
Query: 854 DDKAYVSPVKVIKDSSPDRMEFYDKLIEDKNA-GGMAYYEFLLRIR 898
++ + V+K M F L+EDK+ GG +Y +FL +
Sbjct: 713 AQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMH 758
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 437 bits (1124), Expect = e-140
Identities = 214/823 (26%), Positives = 378/823 (45%), Gaps = 82/823 (9%)
Query: 137 QQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGY 196
Q Q +P+ + P+ + P + PP P
Sbjct: 4 AYGQPSAAMGQNMRPMNQLYPIDLLTE-----LPPPITDLTLPPPPLVIP---------- 48
Query: 197 PSLNQAGYQQQQQQQQQQQQQQQTLNSQFSNLSVNQGMNKMWG--YEPHDLLNTRDILPA 254
+ + + TLN+ N S+ + +G P+ L P
Sbjct: 49 ---PERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 105
Query: 255 TKVEPPPIRLPQNLPEIHEQFLYDRNTEMF-----------------------GDPYRRP 291
+ +R + ++ + + Y R
Sbjct: 106 LNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRN 165
Query: 292 EIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-D 350
EI+ A +EY+A +YT P PA Y FL+DVSQ + +SG L T LL L S+P D
Sbjct: 166 EIKCAVMEYMAPKEYT-LRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHD 224
Query: 351 RRTSIAIITYDSAVHFYSLAEGQT-------QPSQMILTDIDDIFLPSPENILVNLSECY 403
RT I+I+ D+A+H++ + Q + M + D+++ FLP P +++V+L C
Sbjct: 225 ERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACR 284
Query: 404 DMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSR 463
I LL ++P F+ +L + ALGPAL++A+ L+ GG+I + LPN G G LQ R
Sbjct: 285 QNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR 344
Query: 464 ENPNQRS--NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSS 521
+ + ++ FYK ++C+ I VDLF+ + Y+D+A+LS +S+F++
Sbjct: 345 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTA 404
Query: 522 GCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRST 581
G H P +SGKN + + + F+++++ E+VMR R + G+ + F+G+FF RS+
Sbjct: 405 GQTHFYPGFSGKNPNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFYGHFFNRSS 464
Query: 582 DLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNI 641
DL A + D Y ++++DE++ Y QVAVL + + RRIR+ TL +P ++
Sbjct: 465 DLCAFSTMPRDQSYLFEVNVDESIMA-DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESL 523
Query: 642 NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG--- 698
+V ADQ IA AV+++L SL DAR V D+L+TYK T
Sbjct: 524 AEVYASADQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGA 583
Query: 699 SLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYP 758
L ++L++ PL + +L KH AFR G D R A+ ++ LPL L+ +IYP++Y
Sbjct: 584 PLRLCANLRMFPLLMHSLTKHMAFRSG-IVPSDHRASALNNLESLPLKYLIKNIYPDVYS 642
Query: 759 IHTLDQDPTIEWNEL------QVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSP 812
+H + + + + +P+ + ++ + G YL++ + + + + P
Sbjct: 643 LHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGGDAVP 702
Query: 813 AICSGLFGFQSVAQMPETLFELPQLE-TQLSLKLNSFISYLNDDKAYVS--PVKVIK--- 866
A+ +FG Q + +P E+P +E ++ + ++ + I+ L + ++ + +++
Sbjct: 703 ALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYIVRGAS 762
Query: 867 -----------DSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIR 898
+ + R+ L+EDK +Y EFL ++
Sbjct: 763 LSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMK 805
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 336 bits (863), Expect = e-103
Identities = 99/668 (14%), Positives = 199/668 (29%), Gaps = 98/668 (14%)
Query: 279 RNTEMFGDPYRRPEI--QSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTV 336
+ + + E+ Q +++EY+ +R P P ++L+++D + L +
Sbjct: 100 PSYAGISELNQPAELLPQFSSIEYVV-----LRGPQMPLIFLYVVDTCM---EDEDLQAL 151
Query: 337 CEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQ-------------TQPSQMILTD 383
E + L +P + +IT+ V + L + +
Sbjct: 152 KESMQMSLSLLPPTAL--VGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLG 209
Query: 384 IDDIFL------------PSPENILVNLSECYDMIVDLLKQL---PGKFKDSLDSGSALG 428
+ + + P L + + + DLL +L P + G
Sbjct: 210 LSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSG 269
Query: 429 PALQAAFKLLQ----PTGGRITIFQTCLPNRGPGALQSRENPNQR------SNDDPPHMN 478
AL A LL+ TG RI +F +GPG + E D+ ++
Sbjct: 270 VALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVK 329
Query: 479 PATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHV 538
T ++ +A + +D++ L + + G + ++
Sbjct: 330 KGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQT 389
Query: 539 YQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGN---------------FFVRSTDL 583
+Q + K+GF + I+ ++ + I G T
Sbjct: 390 FQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQ 449
Query: 584 LALPNVNPDAGYGIQISI----DENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVV- 638
+ ++P I + + + Q Y S G RRIRV T+
Sbjct: 450 WKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWAD 509
Query: 639 --SNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHL 696
+ I ++ DQ A L+A++A+ R+ D + + +
Sbjct: 510 AQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDD- 568
Query: 697 TGSLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPEL 756
S + L P ++ L + + + D+ + L ++ I P L
Sbjct: 569 PSSFRFSETFSLYPQFMFHLRRSSFLQ-VFNNSPDESSYYRHHFMRQDLTQSLIMIQPIL 627
Query: 757 YPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICS 816
Y P + L + + A L++ I+I + S
Sbjct: 628 YAYSFSGP-------------PEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKS 674
Query: 817 GLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRMEFY 876
G L + P + Q L+ + S R
Sbjct: 675 GYQDMPEYENFRHLL-QAPVDDAQ---------EILHSRFPMPRYIDTEHGGSQARF-LL 723
Query: 877 DKLIEDKN 884
K+ +
Sbjct: 724 SKVNPSQT 731
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 314 bits (805), Expect = 1e-94
Identities = 110/700 (15%), Positives = 208/700 (29%), Gaps = 122/700 (17%)
Query: 285 GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL 344
E+QS T+EY+ + P ++ F++D++ ++ L ++ E ++ L
Sbjct: 97 SQENMPLELQSTTIEYITN-----KPVTVPPIFFFVVDLTS---ETENLDSLKESIITSL 148
Query: 345 KSMPGDRRTSIAIITYDSAVHFYSLA----------EGQTQPSQMILTDIDDIFLPSPEN 394
+P + I +ITY + V + L+ G + LT++ P+
Sbjct: 149 SLLPPNAL--IGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPG 206
Query: 395 I--------------------LVNLSECYDMIVDLLKQL-------PGKFKDSLDSGSAL 427
+ L + + LL+ L P + +GSAL
Sbjct: 207 GAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSAL 266
Query: 428 GPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRS------NDDPPHMNPAT 481
A + RI +F + PG + + E + +D H A
Sbjct: 267 NIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKAC 326
Query: 482 DFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 541
FY +IA + VD+F + ++ + ++ + G + +S Y
Sbjct: 327 KFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLR 386
Query: 542 DRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGN----------------FFVRSTDLLA 585
K+ F M ++ +K + + G+ + +T
Sbjct: 387 LFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWK 446
Query: 586 LPNVNPDAGYGIQISIDENLT-------------HIQYACFQVAVLYTSSKGDRRIRVHT 632
+ +++P Y I I A Q Y S G RIRV T
Sbjct: 447 MASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTT 506
Query: 633 LCLPVVS-NINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMT 691
+ ++ + DQ A L+A++AV ++ +D + + Y
Sbjct: 507 VANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADY 566
Query: 692 QAGHLTGSLLAPSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLS 751
S + L P + L + + D+ F + ++
Sbjct: 567 NKDD-PQSFRLAPNFSLYPQFTYYLRRSQFLS-VFNNSPDETAFYRHIFTREDTTNSLIM 624
Query: 752 IYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTS 811
I P L D P+ + L + ++ LL+ I+I
Sbjct: 625 IQPTLTSFSMEDD-------------PQPVLLDSISVKPNTILLLDTFFFILIYH----- 666
Query: 812 PAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPD 871
G Q + + + L L D + S
Sbjct: 667 -----GEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQA 721
Query: 872 RMEFYDKLIEDKNAGGMA-------------YYEFLLRIR 898
R KL N MA F+ ++
Sbjct: 722 RF-LLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQ 760
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 8e-09
Identities = 92/598 (15%), Positives = 182/598 (30%), Gaps = 199/598 (33%)
Query: 134 LYQQQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPS----------NNLYNNIQV--P 181
+Q++ Q+ ++ N L + + QPS + LYN+ QV
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 182 ---PRAQPGNYPSVPAGYPSLNQAGYQQQQQQQQQQQQQQQTLNSQFSNLSVNQGMN--- 235
R QP Y L QA + + + N+ + G+
Sbjct: 129 YNVSRLQP---------YLKLRQALLELRPAK----------------NVLI-DGVLGSG 162
Query: 236 KMWGYEPHDLLNTRDILPATKVE---PPPI--------RLPQNLPEIHEQFLY------- 277
K W + D+ + KV+ I P+ + E+ ++ LY
Sbjct: 163 KTW-------V-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 278 DRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQ---IAAQSGYLY 334
R+ R IQ+ L + Y L LL+V A +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPY-------ENCLLVLLNVQNAKAWNA-----F 262
Query: 335 TV-CEVLL-----NQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIF 388
+ C++LL + T I++ + + E ++ + + D
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQD-- 317
Query: 389 LPSPENILVN---LSECYDMIVDLLKQLPGKFKDSLDSG-SALGPALQAAFKLLQPTGGR 444
LP E + N LS +I + ++ + + L ++++ +L+P R
Sbjct: 318 LP-REVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 445 -----ITIFQTCLPNRGPGALQSREN---P--------NQRSNDDPPHMNPATDFYKKIA 488
+++F + P D + +K
Sbjct: 373 KMFDRLSVF--------------PPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSL 416
Query: 489 LEC----TSFYIAVDLFI-LNSQYVDLATL--------SGVSKFSSGCI----------H 525
+E ++ I +++ L + + L + F S +
Sbjct: 417 VEKQPKESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 526 HIPLYSGKNMSHVYQLDRMFS------RYLTRKIGFESVMRIRCTKGMSIHT-----FHG 574
HI + KN+ H + +F R+L +KI +S G ++T F+
Sbjct: 476 HIG-HHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTA--WNASGSILNTLQQLKFYK 531
Query: 575 NFFVRS--------TDLLA-LPNVNPDAGYGIQISIDENLTHIQYACF-QVAVLYTSS 622
+ + +L LP + ENL +Y ++A++
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIE------------ENLICSKYTDLLRIALMAEDE 577
Score = 53.3 bits (127), Expect = 3e-07
Identities = 90/627 (14%), Positives = 178/627 (28%), Gaps = 162/627 (25%)
Query: 268 LPEIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLF-LLDVSQI 326
L + F+ + + + D + + ++++ +D + LF L Q
Sbjct: 22 LSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHI----IMSKDAVSGTLRLFWTLLSKQ- 75
Query: 327 AAQSGYLYTVCEV-------LLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQM 379
+ V EV L++ +K+ R+ S+ Y
Sbjct: 76 --EEMVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYIEQRD-------------- 117
Query: 380 ILTDIDDIFLPSPENILVNLSECYDMIVDLLKQL-PGKF----------KDSLDSGSALG 428
L + + +F V+ + Y + L +L P K K +
Sbjct: 118 RLYNDNQVFAKYN----VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV------- 166
Query: 429 PALQAA--FKLLQPTGGRI---TIFQTCLPNRGPGALQS---RENPNQRSNDDPPHMNPA 480
AL +K+ +I + P LQ + +PN S D
Sbjct: 167 -ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----- 220
Query: 481 TDFYKKIALECTSFYIAVDLFILNSQYVD-LATLSGVS------KFSSGC--------IH 525
I L S + + + Y + L L V F+ C
Sbjct: 221 ----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 526 HIPLYSGKNMSHVYQLDRM--FSRYLTRKIGFESVMRIRCTK----GMSIHTFHGNFFVR 579
S +H+ + + + + R ++ + +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 580 ST-DLLA----LPNVNPDA-GYGIQISIDENLTHIQYACFQ-VAVLYTSSKGDRRIRVHT 632
S D LA +VN D I+ S++ F ++V S+ I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPTIL 391
Query: 633 LCL----PVVSNINDVLVGADQACIAGLLAKMAVDRSLQ-HSLS-DAREAFLNVVC---D 683
L L + S++ V+ ++ L+ K + ++ S+ + + N
Sbjct: 392 LSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 684 VLSTYKMTQAGHLTGSLLAPSSLKLLPL--YVLALLKHPAFRIGQSTR--------LDDR 733
++ Y + + L L Y + + H I R LD R
Sbjct: 449 IVDHYNIPKT-------FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 734 LF--------AMTEMKCLPLNSLMLSIYPELYPIHTLDQDPT--------------IEWN 771
F + + + + + + Y + D DP IE N
Sbjct: 502 -FLEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 772 ELQVPIPRILQLSAERLQATGTYLLNM 798
+ +L+++ L A +
Sbjct: 559 LICSKYTDLLRIA---LMAEDEAIFEE 582
Score = 52.5 bits (125), Expect = 7e-07
Identities = 70/450 (15%), Positives = 129/450 (28%), Gaps = 143/450 (31%)
Query: 476 HMNPATDF--------YKKIALECTSFYIAVDLFI--LNSQYV-DLATLSGVSKFSSGCI 524
HM DF YK I + D F+ + + V D+ + S I
Sbjct: 6 HM----DFETGEHQYQYKDI------LSVFEDAFVDNFDCKDVQDM--PKSI--LSKEEI 51
Query: 525 HHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLL 584
HI + S +S R+F +K + FV
Sbjct: 52 DHI-IMSKDAVSGTL---RLFW--------------TLLSKQEEMV----QKFVEEVL-- 87
Query: 585 ALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDV 644
+ Y +S I+ Q + + T ++R R++ ND
Sbjct: 88 -----RIN--YKFLMS------PIKTEQRQPS-MMTRMYIEQRDRLY----------NDN 123
Query: 645 LVGADQACIAGLLAKMAVDR-----SLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTG- 698
V AK V R L+ +L + R A NV+ + G +G
Sbjct: 124 QV----------FAKYNVSRLQPYLKLRQALLELRPA-KNVL-----IDGV--LG--SGK 163
Query: 699 SLLAPSSLKLLPLYVLALLKHPAFRI-----GQSTRLDDRLFAMTEMKCLPLNSLMLSIY 753
+ +A + F+I + L EM L L+ I
Sbjct: 164 TWVALDVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVL----EM----LQKLLYQID 210
Query: 754 PELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDL------------ 801
P + + + +Q + R+L+ + + LL + ++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENC---LLVLLNVQNAKAWNAFNLS 265
Query: 802 --IIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYV 859
I++ R S ++++ L L+ L +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 860 SPVKV------IKDSSPDRMEFYDKLIEDK 883
+P ++ I+D + + + DK
Sbjct: 326 NPRRLSIIAESIRD-GLATWDNWKHVNCDK 354
Score = 48.7 bits (115), Expect = 1e-05
Identities = 84/619 (13%), Positives = 164/619 (26%), Gaps = 216/619 (34%)
Query: 83 LSTPVPQQFQRPQQQNANHSQQTFRMPPNTYSQSSKTAPFN----NGLTPLTNASLYQQQ 138
L +P+ + ++P + +Q R+ Y+ + A +N L A L + +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQA-LLELR 148
Query: 139 QQQ--------------------QQQQQQQQQPIP----NIPPLPNSQQNSSN--FQPSN 172
+ + Q + N+ NS +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-----KNCNSPETVLEMLQ 203
Query: 173 NLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQQQQQQQQQQQQTL----NSQFSNL 228
L I ++ + ++ S+ Q + ++ + + + L N Q N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCLLVLLNVQ--NA 256
Query: 229 SVNQGMN---KMWGYEPHDLLNTRDILPATKVEPPPIRLPQNLPEIHEQFLYDRNTEMFG 285
N K+ LL TR + T +
Sbjct: 257 KAWNAFNLSCKI-------LLTTRFKQVTDFLSA------------------ATTTHISL 291
Query: 286 DPYRRPEIQSATVEYLAT-ADYTVRDPPQPAMYLFLLDVSQIAAQ--------SGYLYTV 336
D + L D +D P+ + +S IA + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 337 CEVL-------LNQLKSMPGDRR---TSIAIITYDSAV---------------------- 364
C+ L LN L+ P + R +++ + +
Sbjct: 352 CDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 365 --HFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLD 422
H YSL E Q + S + + + ++L +L +
Sbjct: 410 KLHKYSLVEKQPKESTISI---------------------PSIYLELKVKLENE------ 442
Query: 423 SGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHMNPATD 482
AL + + P +DD P D
Sbjct: 443 ------YALHRSI------------------------VDHYNIPKTFDSDDLI--PPYLD 470
Query: 483 --FYKKIA--LECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHH--IPLYSGKNMS 536
FY I L+ + LF ++D +F I H + ++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF--RMVFLDF-------RFLEQKIRHDSTAWNASGSIL 521
Query: 537 HVYQLDRMFSRYLTRKIG-FESVMRIRCTKGMSIHTF---HGNFFVRS--TDLLALPNVN 590
+ Q + + Y+ +E ++ +I F + S TDLL + +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVN-------AILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 591 PDAGYGIQISIDENLTHIQ 609
D +E +Q
Sbjct: 575 EDEAI-----FEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 2e-08
Identities = 83/470 (17%), Positives = 138/470 (29%), Gaps = 195/470 (41%)
Query: 232 QGMNKMW---------GYEPH--DLLNTRDILPATKVEPPPIRLPQNLPEIHEQ------ 274
QG + Y DL+ + + IR + ++ Q
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKF-----SAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 275 FLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLY 334
+L +P P+ +YL + + P L+ V Q+A Y
Sbjct: 218 WL--------ENPSNTPD-----KDYLLSIPISC-----P-----LIGVIQLAH---Y-V 250
Query: 335 TVCEVL-LNQLKSMPGDRR--------------TSIAIITYDSAVHFYSLA--------- 370
++L PG+ R T++AI DS F+
Sbjct: 251 VTAKLLGFT-----PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 371 ---EGQ-----TQPSQMILTDIDDIF--LPSPENILV--NLS-ECYDMIVDLL-KQLPGK 416
T IL D + +PSP +L NL+ E V+ LP
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSP--MLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 417 FKDSLDSGSAL----------GP--ALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRE 464
+ + +L GP +L L+ + G QSR
Sbjct: 364 KQVEI----SLVNGAKNLVVSGPPQSLYGLNLTLR----KAK--------APSGLDQSRI 407
Query: 465 NPNQR----SND-DP-------PHMNPATDFYKKIALECTSFYIAVDLFILNSQY--VDL 510
++R SN P + PA+D I DL N + D+
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDL------------INKDLVKNNVSFNAKDI 455
Query: 511 ATLSGVSKFSSGCIHHIPLYS---GKNMSHVYQLDRMFSRYLTRKIGFESVMRIRC---- 563
IP+Y G ++ R+ S ++ +I + ++R+
Sbjct: 456 Q---------------IPVYDTFDGSDL-------RVLSGSISERI-VDCIIRLPVKWET 492
Query: 564 -TKGMSIH--TF-------HGNFFVRSTD-------LLALPNVNPDAGYG 596
T+ + H F G R+ D + ++NPD YG
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 55.8 bits (134), Expect = 7e-08
Identities = 86/603 (14%), Positives = 171/603 (28%), Gaps = 195/603 (32%)
Query: 262 IRLPQNLPEIHEQFLYDRNTEMFGDPYRRPEI---QSATVEYLA-----TADYTVRDPPQ 313
+ +P I Q L ++ ++ +P + E + + +P +
Sbjct: 20 LLVPTASFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLV--EPSK 76
Query: 314 PAMYLFLLDVSQIAAQSGYL-----YTVCEVLLNQLKSMPGDRRTSIA-----IITYDSA 363
+ +L++ ++ YL + + + + T++ I Y +A
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHAL-------AAKLLQENDTTLVKTKELIKNYITA 129
Query: 364 VHFYSLAEGQTQPSQMILTDIDD----IFLP-----SPENILVNLSECYDMIVDLLKQLP 414
+ S + + + + + ++ L + Y
Sbjct: 130 RIMAKRPFDKKSNSA-LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ---------- 178
Query: 415 GKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDP 474
+G ++ + + L + +G L+ ENP+
Sbjct: 179 -------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-QGLNILEWLENPSNT----- 225
Query: 475 PHMNPATDFYKKIALEC-----TSF--YIAVDLFILNSQYVDL-ATLSGVSKFSSGCIHH 526
P D+ I + C Y+ V +L +L + L G + S G +
Sbjct: 226 ----PDKDYLLSIPISCPLIGVIQLAHYV-VTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 527 IPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLAL 586
+ + + + R L IG RC + A
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFF-IGV------RCYE-------------------AY 314
Query: 587 PNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLV 646
PN + ++ S++ N +++ + +V V+ N L
Sbjct: 315 PNTSLPPSI-LEDSLENNEG---VPSPMLSI-----SNLTQEQVQDY----VNKTNSHLP 361
Query: 647 GADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSL 706
Q I SL + + VV +G P SL
Sbjct: 362 AGKQVEI---------------SLVNGAKNL--VV-----------SGP-------PQSL 386
Query: 707 KLLPLYVLALLKHPA------FRIGQSTR---LDDRLFAMTEMKCLPLNSLMLSIYPELY 757
L L L K A RI S R +R F LP+ S
Sbjct: 387 YGL---NLTLRKAKAPSGLDQSRIPFSERKLKFSNR-F-------LPVAS---------- 425
Query: 758 PIHT---------LDQD---PTIEWN--ELQVPIPRILQLSAERLQATGTYLL-NMPDLI 802
P H+ +++D + +N ++Q+P+ L+ + + D I
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSDLRVLSGSISERIVDCI 483
Query: 803 IIL 805
I L
Sbjct: 484 IRL 486
Score = 52.4 bits (125), Expect = 7e-07
Identities = 76/495 (15%), Positives = 133/495 (26%), Gaps = 159/495 (32%)
Query: 254 ATKVEPPPIR-----LPQNLPEIHEQFLYDRN---------TEMFGDPYRRPEIQSATVE 299
++ VEP + L L E +L + E + E+ +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 300 YLATADYTVRDPPQPAMYLFLLDVSQIAAQSG--YLYTVC------EVLLNQLKSMPGDR 351
A A L A G L + + +L+ +
Sbjct: 129 ARIMAKRPFDKKSNSA----LFR----AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 352 RTSIAIITYDSAVHFYSLAEGQTQPSQMILT--DI-----------DDIFLPS-----PE 393
+ + SA L ++ +I D +L S P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 394 NILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAA-----------F------- 435
++ L+ Y + LL PG+ + L + L A F
Sbjct: 241 IGVIQLA-HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 436 -KLLQPTGGRITIFQTCLPNRG--PGALQ-SRENPNQRSNDDPPHM-----NPATDFYKK 486
+L G R PN P L+ S EN + P M
Sbjct: 300 ITVLFFIGVR---CYEAYPNTSLPPSILEDSLEN----NEGVPSPMLSISNLTQEQVQDY 352
Query: 487 IALECTSF----YIAVDLFILNS--QYVDLA----TLSGVSKFSSGCIHHIPLYSGKNMS 536
+ + + + L N V ++ +L G++ + SG + S
Sbjct: 353 VNKTNSHLPAGKQVEISLV--NGAKNLV-VSGPPQSLYGLNLT----LRKAKAPSGLDQS 405
Query: 537 HVYQLDRMFSRYLTRKIGFESVMR---IRCTKGMSIHT--FHGNFFVRSTDLL--ALPNV 589
+ FS RK+ F R + FH + LL A +
Sbjct: 406 RI-----PFSE---RKLKF--SNRFLPV---------ASPFH-------SHLLVPASDLI 439
Query: 590 NPD-AGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGA 648
N D + + + Q+ V T D R+ + +I++ +V
Sbjct: 440 NKDLVKNNVSFNAKD---------IQIPVYDTFDGSDLRV--------LSGSISERIV-- 480
Query: 649 DQACIAGLLAKMAVD 663
D ++ V
Sbjct: 481 DCII------RLPVK 489
Score = 47.4 bits (112), Expect = 2e-05
Identities = 79/526 (15%), Positives = 140/526 (26%), Gaps = 191/526 (36%)
Query: 368 SLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSAL 427
+L+ G + L P S+ + +L + F + +
Sbjct: 10 TLSHGSLEHV-----------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 428 GPALQAAF-----KLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHM----- 477
L F L++P ++ F L L EN ND H
Sbjct: 59 E--LVGKFLGYVSSLVEP--SKVGQFDQVLNL----CLTEFENCYLEGND--IHALAAKL 108
Query: 478 --NPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSK-FSSGCIHHIPLYS--- 531
T K L ++ A + + + S F + + L +
Sbjct: 109 LQENDTTLVKTKEL-IKNYITA--RIMAKRPFDKKSN----SALFRAVGEGNAQLVAIFG 161
Query: 532 GKNMSHVY--QLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDL---LAL 586
G+ + Y +L ++ Y ++ + F + ++ L
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 587 PNVNPDAGY--GIQIS---IDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNI 641
P+ PD Y I IS I + Q A + V ++ P +
Sbjct: 222 PSNTPDKDYLLSIPISCPLI--GVI--QLAHYVVTA-----------KLLGFT-P--GEL 263
Query: 642 NDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLL 701
L GA GL+ +A+ + +D+ E+F
Sbjct: 264 RSYLKGA-TGHSQGLVTAVAI------AETDSWESFFV---------------------S 295
Query: 702 APSSLKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHT 761
++ +L F IG ++C E YP +
Sbjct: 296 VRKAITVL------------FFIG--------------VRCY-----------EAYPNTS 318
Query: 762 LDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGF 821
L P IL+ S E + + +L+ S L
Sbjct: 319 LP--------------PSILEDSLENNEGVPSPMLS-----------------ISNL--- 344
Query: 822 QSVAQMPETLFELPQLETQLSLKLNS--------FISYLNDDKAYV 859
Q++ ++ K NS IS +N K V
Sbjct: 345 -----------TQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLV 378
Score = 38.9 bits (90), Expect = 0.011
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 26/145 (17%)
Query: 772 ELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPA-ICSGLFGFQSVAQMPET 830
E + +P A +LQ +L P T+PA + G+ V+ + E
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY--VSSLVEP 74
Query: 831 LFELPQLETQLSLKLNSFIS-YL--NDDKAYVSPVKVIKDSSPDRMEFYDKLIEDKNAGG 887
++ Q + L+L L F + YL ND A + + D++ + + +LI+
Sbjct: 75 S-KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK---ELIK------ 124
Query: 888 MAYYEFLLRIRDYQASVLTTTPPRQ 912
Y A ++ P +
Sbjct: 125 -NY---------ITARIMAKRPFDK 139
Score = 31.9 bits (72), Expect = 1.1
Identities = 53/386 (13%), Positives = 91/386 (23%), Gaps = 184/386 (47%)
Query: 223 SQFSNLSVNQGMNKMWG---YEPH----DLLNTRD----------ILPATKVEPPPIRLP 265
SQ QGM G Y+ D+ N D IL P + +
Sbjct: 1626 SQE------QGM----GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 266 ------QNLPEIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPP------- 312
+ + E + +++ + G + + YT R
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVD--GKLKTEKIFKEINEH---STSYTFRSEKGLLSATQ 1730
Query: 313 --QPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAV--HFYS 368
QPA+ L++ + LKS +I D+ H S
Sbjct: 1731 FTQPAL--TLMEKAAFED---------------LKSK--------GLIPADATFAGH--S 1763
Query: 369 LAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSAL- 427
L E Y +AL
Sbjct: 1764 LGE-------------------------------Y---------------------AALA 1771
Query: 428 GPA----LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSNDDPPHM---NPA 480
A +++ +++ F R G P M NP
Sbjct: 1772 SLADVMSIESLVEVV---------FY-----R--GMTMQVAVPRDELGRSNYGMIAINPG 1815
Query: 481 T-----------DFYKKIALECTSFYIAVDLFILN-----SQYV------DLATLSGVSK 518
+++ + I+N QYV L T++ V
Sbjct: 1816 RVAASFSQEALQYVVERVGKRTGWL-----VEIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 519 FSSGCIHHIPLYSGKNMSHVYQLDRM 544
F + I + + L+ +
Sbjct: 1871 FIK--LQKIDI---IELQKSLSLEEV 1891
Score = 31.9 bits (72), Expect = 1.2
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 26/113 (23%)
Query: 12 NSYGSASNVMQVPLIASN-PSQP--SGAAPPIS--GLQPQV-----PVSNSSLQTPLGSS 61
NS+ A +++ L+ N SG PP S GL + P + P
Sbjct: 357 NSHLPAGKQVEISLV--NGAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSRIPFSE- 411
Query: 62 NMMRPPLVTNRF---QAPGATINS--LSTPVPQQFQRPQQQNANHSQQTFRMP 109
R +NRF +P +S L + + N + + + ++P
Sbjct: 412 ---RKLKFSNRFLPVASP---FHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 39.9 bits (93), Expect = 0.001
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 387 IFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRIT 446
+ L EN+ + E + L LP K + A++ L+ GGR+
Sbjct: 74 LILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEV-GGRLA 132
Query: 447 I 447
I
Sbjct: 133 I 133
>3lj5_A Portal protein, protein GP1; DNA ejection, molecular motor, DNA
packaging podoviridae, virus assembly, tail tube, trunk
domain; 7.50A {Enterobacteria phage P22}
Length = 725
Score = 35.1 bits (79), Expect = 0.11
Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 1/101 (0%)
Query: 137 QQQQQQQQQQQQQQPIPNIPPL-PNSQQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAG 195
Q +QQ + + + + P P Q + + + A
Sbjct: 524 FQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKK 583
Query: 196 YPSLNQAGYQQQQQQQQQQQQQQQTLNSQFSNLSVNQGMNK 236
+ + + + QQ +Q QQ + +Q L + K
Sbjct: 584 PETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAK 624
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/95 (15%), Positives = 26/95 (27%)
Query: 127 TPLTNASLYQQQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPRAQP 186
P + Q + + + + Q P L + + + +
Sbjct: 521 GPSFQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMG 580
Query: 187 GNYPSVPAGYPSLNQAGYQQQQQQQQQQQQQQQTL 221
P P L +A +Q QQ Q Q L
Sbjct: 581 VKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVL 615
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein
transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Length = 554
Score = 34.0 bits (77), Expect = 0.22
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 126 LTPLTNASLYQQQQQQQQQQQQQQQPIPNIPPLPNSQQNSS 166
L P +Q+++Q Q+ + PP+ + Q+ +
Sbjct: 4 LLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEA 44
Score = 33.2 bits (75), Expect = 0.42
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 136 QQQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQV 180
+Q+++Q Q+ ++ P + P S+ + +P + + V
Sbjct: 17 RQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHTVTV 61
Score = 31.7 bits (71), Expect = 1.2
Identities = 7/56 (12%), Positives = 18/56 (32%)
Query: 128 PLTNASLYQQQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPR 183
L + + +Q+++Q Q+ I P + N + + +
Sbjct: 3 QLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARKPDATSGHT 58
Score = 29.0 bits (64), Expect = 9.6
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 197 PSLNQAGYQQQQQQQQQQQQQQQTLNSQ 224
P +Q+++Q Q+ + ++
Sbjct: 6 PGARDLNRIDDRQRKEQLQRDIERALTR 33
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.35
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 15/42 (35%)
Query: 833 ELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSPDRME 874
L +L+ SLKL Y DD A P IK + ME
Sbjct: 21 ALKKLQA--SLKL-----Y-ADDSA---PALAIKAT----ME 47
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like
protein,haloarcula marismortui ATCC 430 structural
genomics, PSI-2; 2.65A {Haloarcula marismortui}
Length = 125
Score = 30.4 bits (69), Expect = 0.92
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 16/65 (24%)
Query: 206 QQQQQQQQQQQQQQTLNSQFSN--------------LSVNQGMNKMWGYEPHDLL--NTR 249
+ + Q++ ++ S S+ LSVN M G +P L+
Sbjct: 6 NRIENVVSQERTRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLS 65
Query: 250 DILPA 254
++ +
Sbjct: 66 AVMDS 70
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus}
SCOP: b.148.1.1
Length = 158
Score = 30.2 bits (67), Expect = 1.6
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 140 QQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSL 199
P + LPN +S F L + + R G +
Sbjct: 5 HHHHHHSSGLVPRGSAMGLPN--NTASWFTA---LTQHGKEELRFPRGQGVPINTNSGPD 59
Query: 200 NQAGYQQQQQQQQQQQQQQQT 220
+Q GY ++ ++ + +
Sbjct: 60 DQIGYYRRATRRVRGGDGKMK 80
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 31.5 bits (70), Expect = 1.7
Identities = 33/184 (17%), Positives = 55/184 (29%), Gaps = 36/184 (19%)
Query: 92 QRPQQQNANHSQQTFRMPPNT-----YSQSSKTAPFNNG------LTPLTNASLYQQQQQ 140
Q P+ Q A + + N YS + G P + + QQQ
Sbjct: 36 QHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQ 95
Query: 141 QQQQQQQQQQPIPNIPPLPNSQQNSSNFQP----------SNNLYNN-------IQVPPR 183
++ + QQ + + S Q +F YN I +
Sbjct: 96 SSRRGSRSQQQLQD------SHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDT 149
Query: 184 AQPGNY--PSVPAGYPSLNQAGYQQQQQQQQQQQQQQQTLNSQFSNLSVNQGMNKMWGYE 241
+ N + Y + N + QQQQQQ+ +G + + G+
Sbjct: 150 SNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFS 209
Query: 242 PHDL 245
H L
Sbjct: 210 KHFL 213
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM
PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 279
Score = 30.5 bits (68), Expect = 2.0
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 133 SLYQQQQQQQQQQQQQQQPIPNIPPLPNSQQN--SSNFQPSNNLYNNIQ---------VP 181
+ ++ ++ QQ+ + + + SQ + S F YN++Q
Sbjct: 110 QIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENV 169
Query: 182 PRAQPGNYPSVPAGYPSLNQAGYQQQQQQQQQQQQQQQTLN 222
R PS+ + + + + LN
Sbjct: 170 ARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLN 210
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Length = 282
Score = 30.6 bits (68), Expect = 2.1
Identities = 15/141 (10%), Positives = 30/141 (21%), Gaps = 3/141 (2%)
Query: 33 PSGAAPPISGLQPQVPVSNSSLQTPLGSSNMMRPPLVTNRFQAPGATINSLSTPVPQQFQ 92
S + G + + + + + + +P Q
Sbjct: 90 DSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQ 149
Query: 93 RPQQQNANHSQQTFRMPP---NTYSQSSKTAPFNNGLTPLTNASLYQQQQQQQQQQQQQQ 149
P+ + Q + PP + P Q +
Sbjct: 150 APRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHI 209
Query: 150 QPIPNIPPLPNSQQNSSNFQP 170
+ N+P N S F
Sbjct: 210 LFLTNLPEETNELMLSMLFNQ 230
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG,
structural genomics, center for structural genomics;
1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Length = 120
Score = 29.1 bits (66), Expect = 2.5
Identities = 4/28 (14%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 228 LSVNQGMNKMWGYEPHDLL--NTRDILP 253
N + ++ DL+ + + P
Sbjct: 25 EDCNDELAAIFRCARADLIGRSFEVLYP 52
>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage
protein; 1.70A {Capparis masaikai}
Length = 72
Score = 28.2 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 197 PSLNQAGYQQQQQQQQQQQQQQQTLNSQFSNL 228
P L QA Q Q+Q Q QQ + L NL
Sbjct: 24 PVLRQAAQQVLQRQIIQGPQQLRRLFDAARNL 55
>1fx3_A SECB, protein-export protein SECB; protein trasnport,
translocation, transport protein; 2.50A {Haemophilus
influenzae} SCOP: d.33.1.1 PDB: 1ozb_A
Length = 169
Score = 28.8 bits (64), Expect = 4.7
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 194 AGYPSLN------QAGYQQQQQQQQQQQQQQQTLNSQ 224
+P+LN A + + +QQ + ++++ Q
Sbjct: 130 GTFPALNLSPVNFDALFVEYMNRQQAENAEEKSEEEQ 166
>2gec_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, viral,
viral protein; 1.30A {Infectious bronchitis virus} SCOP:
b.148.1.1 PDB: 2bxx_A 2c86_A 2btl_A
Length = 139
Score = 28.5 bits (63), Expect = 5.2
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 156 PPLPNSQQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQQQQQQQQ 215
PP S N+S FQ + P G+ + Q GY ++Q + + +
Sbjct: 3 PPKVGSSGNASWFQAIKA--KKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQARFKPGK 60
Query: 216 QQQQTLNSQF 225
+++ + +
Sbjct: 61 GRRKPVPDAW 70
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 28.8 bits (64), Expect = 6.5
Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 26/143 (18%)
Query: 21 MQVPLIASNPSQPSGAAPPISGLQPQVPVSNSSLQTPLGSSNMMRPPLVTNRFQAPGATI 80
+P P P+G A P+ G+ + TP G + A A+I
Sbjct: 112 RGIPAGVPMPQAPAGLAGPVRGVGGPSQ----QVMTPQGRGTVAAAA------AAATASI 161
Query: 81 NSLSTPVPQQFQRPQQQNANHSQQTFRMPPNTYSQSSKTAPFNNGLTPLTNASLYQQQQQ 140
T P R P P G P +
Sbjct: 162 AGAPTQYPP----------------GRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205
Query: 141 QQQQQQQQQQPIPNIPPLPNSQQ 163
+ P P + P P +
Sbjct: 206 PPGRGTPMGMPPPGMRPPPPGMR 228
>1qyn_A Protein-export protein SECB; tetramer, greek KEY beta sheet,
chaperone; 2.35A {Escherichia coli} SCOP: d.33.1.1
Length = 153
Score = 28.4 bits (63), Expect = 6.8
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 194 AGYPSLN------QAGYQQQQQQQQQQQQQQQ 219
+P LN A + QQQ + ++
Sbjct: 121 GTFPQLNLAPVNFDALFMNYLQQQAGEGTEEH 152
Score = 28.0 bits (62), Expect = 9.7
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 134 LYQQQQQQQQQQQQQQQ 150
L+ QQQ + ++
Sbjct: 136 LFMNYLQQQAGEGTEEH 152
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.1 bits (65), Expect = 7.4
Identities = 25/104 (24%), Positives = 30/104 (28%), Gaps = 14/104 (13%)
Query: 114 SQSSKTAPFNNGLTPLTNASLYQQ-QQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSN 172
+SS AP + ++ Q+ QQQQ Q P P P Q P
Sbjct: 357 GESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYP---PQGYPPQGYP-- 411
Query: 173 NLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQQQQQQQQQ 216
P P YP P G P Q Q Q
Sbjct: 412 --------PQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQAYQ 447
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus
SP} PDB: 2zdi_A
Length = 117
Score = 27.6 bits (61), Expect = 7.5
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 205 QQQQQQQQQQQQQQQTLNSQFSNLSVNQGMNKM 237
Q Q + QQQ Q + Q + + K
Sbjct: 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKK 41
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA
binding, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.5.6.1 PDB: 2k6b_A
Length = 118
Score = 27.5 bits (61), Expect = 8.7
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 201 QAGYQQQQQQQQQQQQQQQ 219
QA + QQ+ + ++
Sbjct: 17 QAKHGDPGDAAQQEAKHRE 35
Score = 27.5 bits (61), Expect = 9.2
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 201 QAGYQQQQQQQQQQQQQQQTLNS 223
+ G QQ+ + ++ + NS
Sbjct: 19 KHGDPGDAAQQEAKHREAEMRNS 41
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG,
structural genomics, midwest center for structural
genomics, protein S initiative; 2.45A {Bacillus
halodurans}
Length = 165
Score = 28.1 bits (63), Expect = 8.8
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 129 LTNASLYQQQQQQQQQQQQQQQ 150
+ N LY Q + +Q+ + +
Sbjct: 141 IENVELYGQVLRSKQEWEDTFK 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,221,122
Number of extensions: 779312
Number of successful extensions: 2525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2235
Number of HSP's successfully gapped: 82
Length of query: 912
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 810
Effective length of database: 3,853,851
Effective search space: 3121619310
Effective search space used: 3121619310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.1 bits)