RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14673
(912 letters)
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 252
Score = 245 bits (626), Expect = 2e-75
Identities = 88/250 (35%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSL- 369
P PA Y FL+DVSQ + +SG L T LL L S+P D RT I+I+ D+A+H++ +
Sbjct: 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60
Query: 370 ------AEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDS 423
E Q + M + D+++ FLP P +++V+L C I LL ++P F+ +L +
Sbjct: 61 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120
Query: 424 GSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQ--RSNDDPPHMNPAT 481
ALGPAL++A+ L+ GG+I + LPN G G LQ R S + ++
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQD 180
Query: 482 DFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 541
FYK ++C+ I VDLF+ + Y+D+A+LS +S+F++G H P +SGKN + + +
Sbjct: 181 SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240
Query: 542 DRMFSRYLTR 551
F+++++
Sbjct: 241 STEFAKHISM 250
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 271
Score = 187 bits (476), Expect = 3e-54
Identities = 48/281 (17%), Positives = 92/281 (32%), Gaps = 54/281 (19%)
Query: 314 PAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAE-- 371
P ++ F++D++ L E ++ L +P + I +ITY + V + L+
Sbjct: 2 PPIFFFVVDLTSETENLDSL---KESIITSLSLLPPNAL--IGLITYGNVVQLHDLSSET 56
Query: 372 ----------------------------GQTQPSQMILTDIDDIFLPSPENILVNLSECY 403
G + + ++ + S + L +
Sbjct: 57 IDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVE 116
Query: 404 DMIVDLLKQL---PGKFKDSLDSGSALGPALQAAFKLLQ----PTGGRITIFQTCLPNRG 456
+ LL+ L A G AL A LLQ RI +F +
Sbjct: 117 FKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVA 176
Query: 457 PGALQSRENPNQ-RSNDD-----PPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDL 510
PG + + E + RS+ D H A FY +IA + VD+F + +
Sbjct: 177 PGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGM 236
Query: 511 ATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTR 551
+ + ++ + G + +S + + R +
Sbjct: 237 SEMKQLTDSTGGVLLLTDAFST------AIFKQSYLRLFAK 271
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 177
Score = 130 bits (328), Expect = 2e-35
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 544 MFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDE 603
+ Y E+VMR R + G+ + F+G+FF RS+DL A + D Y ++++DE
Sbjct: 74 VIRPYQHLYDCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDE 133
Query: 604 NLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGA 648
++ Y QVAVL + + RRIR+ TL +P ++ +V A
Sbjct: 134 SIM-ADYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASA 177
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 109 bits (275), Expect = 4e-29
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 649 DQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAG---HLTGSLLAPSS 705
DQ IA AV+++L SL DAR V D+L+TYK L ++
Sbjct: 1 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCAN 60
Query: 706 LKLLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIY 753
L++ PL + +L KH AFR G D R A+ ++ LPL L+ +IY
Sbjct: 61 LRMFPLLMHSLTKHMAFRSGIVPS-DHRASALNNLESLPLKYLIKNIY 107
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 173
Score = 93.9 bits (233), Expect = 8e-23
Identities = 30/168 (17%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 754 PELYPIHTLDQDPTIEWNEL------QVPIPRILQLSAERLQATGTYLLNMPDLIIILVR 807
P++Y +H + + + + +P+ + ++ + G YL++ + + + +
Sbjct: 1 PDVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMG 60
Query: 808 HGTSPAICSGLFGFQSVAQMPETLFELPQLE-TQLSLKLNSFISYL--NDDKAYVSPVKV 864
PA+ +FG Q + +P E+P +E ++ + ++ + I+ L +DD + +
Sbjct: 61 GDAVPALVFDVFGTQDIFDIPIGKQEIPVVENSEFNQRVRNIINQLRNHDDVITYQSLYI 120
Query: 865 IKDSSPD--------------RMEFYDKLIEDKNAGGMAYYEFLLRIR 898
++ +S R+ L+EDK +Y EFL ++
Sbjct: 121 VRGASLSEPVNHASAREVATLRLWASSTLVEDKILNNESYREFLQIMK 168
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 85
Score = 41.4 bits (97), Expect = 2e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 274 QFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRD 310
+ + Y R EI+ A +EY+A +YT+R
Sbjct: 49 MQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQ 85
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 39.9 bits (93), Expect = 7e-04
Identities = 30/200 (15%), Positives = 55/200 (27%), Gaps = 46/200 (23%)
Query: 70 TNRFQAPGATINSLSTPVPQQFQRPQQQNANHS--QQTFRMPPNTYSQSSKTAPFNNG-- 125
+R ++ G I + Q + + + +P +YS + G
Sbjct: 14 DHRVESEGGLI-ETWNSQHPELQCAGVTVSKRTLNRNGLHLP--SYSPYPQMIIVVQGKG 70
Query: 126 ---LTPLTNASLYQQQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQP----------SN 172
+++ QQQ ++ + Q L +S Q +F
Sbjct: 71 AIGFAFPGCPETFEKPQQQSSRRGSRSQ-----QQLQDSHQKIRHFNEGDVLVIPPGVPY 125
Query: 173 NLYNN-----------------IQVPPRAQ----PGNYPSVPAGYPSLNQAGYQQQQQQQ 211
YN Q+ + GN Q ++Q
Sbjct: 126 WTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQ 185
Query: 212 QQQQQQQQTLNSQFSNLSVN 231
Q QQQ++ S S S +
Sbjct: 186 GQHQQQEEEGGSVLSGFSKH 205
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 75
Score = 33.3 bits (76), Expect = 0.012
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 285 GDPYRRPEIQSATVEYLATADYT 307
E+QS T+EY+ T
Sbjct: 53 SQENMPLELQSTTIEYITNKPVT 75
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 176
Score = 35.6 bits (82), Expect = 0.013
Identities = 13/58 (22%), Positives = 19/58 (32%)
Query: 589 VNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLV 646
N A +S + A Q Y S G RIRV T+ ++ +
Sbjct: 116 ANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIA 173
>d1v19a_ c.72.1.1 (A:) 2-keto-3-deoxygluconate kinase {Thermus
thermophilus [TaxId: 274]}
Length = 302
Score = 35.9 bits (81), Expect = 0.016
Identities = 35/275 (12%), Positives = 60/275 (21%), Gaps = 14/275 (5%)
Query: 404 DMIVDLLKQLPGKFKDSLDSGSALG--PALQA-AFKLLQPTGGRITIFQTCLPNRGPGAL 460
+ +V L+ Q PG + +G A A L G F + GA+
Sbjct: 9 EPLVALVPQEPGHLRGKRLLEVYVGGAEVNVAVALARL----GVKVGFVGRVGEDELGAM 64
Query: 461 QSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFS 520
+ + P ++
Sbjct: 65 VEERLRAEGVDLTHFRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLE 124
Query: 521 SGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRS 580
H+ + R FS + + V
Sbjct: 125 GVRFLHL----SGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFL 180
Query: 581 TDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCL--PVV 638
L ++ + ++ ++ VL +KG
Sbjct: 181 ERALPGVDLLFLSEEEAELLFGRVEEALRALSAPEVVLKRGAKGAWAFVDGRRVEGSAFA 240
Query: 639 SNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDA 673
D VGA A AG LA ++ L A
Sbjct: 241 VEAVDP-VGAGDAFAAGYLAGAVWGLPVEERLRLA 274
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean
(Glycine max), proglycinin [TaxId: 3847]}
Length = 239
Score = 33.7 bits (77), Expect = 0.064
Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 34/189 (17%)
Query: 70 TNRFQAPGATINSLSTPVPQQFQRPQQQNANHS--QQTFRMPPNTYSQSSKTAPFNNG-- 125
NR ++ G I + + P + FQ + + + R P +Y+ + G
Sbjct: 14 DNRIESEGGLIETWN-PNNKPFQCAGVALSRCTLNRNALRRP--SYTNGPQEIYIQQGKG 70
Query: 126 ---LTPLTNASLYQQQQQQQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNN--------- 173
+ S +++ QQ QQ+ Q + + Q NF+ +
Sbjct: 71 IFGMIYPGCPSTFEEPQQPQQRGQSSRPQ--------DRHQKIYNFREGDLIAVPTGVAW 122
Query: 174 -LYNNIQVPPRAQPGNYPSVPAGYPSLNQ------AGYQQQQQQQQQQQQQQQTLNSQFS 226
+YNN P A + +Q+ + QQ+Q Q+ +
Sbjct: 123 WMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQ 182
Query: 227 NLSVNQGMN 235
N+G +
Sbjct: 183 QEEENEGGS 191
>d1psya_ a.52.1.3 (A:) 2S albumin RicC3 {Castor bean (Ricinus
communis) [TaxId: 3988]}
Length = 125
Score = 31.4 bits (71), Expect = 0.17
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 31/111 (27%)
Query: 130 TNASLYQQQQQQQQQQQQQQQ-------------------PIPNIPPLPNSQQNSSNFQP 170
+ QQ +Q+ Q++ + +P N QQ S Q
Sbjct: 6 SKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQ 65
Query: 171 SNNLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQQQQQQQQQQQQTL 221
N QV Q ++ Q QQ Q ++ ++
Sbjct: 66 CCNQVK--QVRDECQC----------EAIKYIAEDQIQQGQLHGEESERVA 104
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 28.1 bits (63), Expect = 1.5
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 201 QAGYQQQQQQQQQQQQQQQTLNS 223
+ G QQ+ + ++ + NS
Sbjct: 12 KHGDPGDAAQQEAKHREAEMRNS 34
Score = 28.1 bits (63), Expect = 1.8
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 201 QAGYQQQQQQQQQQQQQQQ 219
QA + QQ+ + ++
Sbjct: 10 QAKHGDPGDAAQQEAKHRE 28
Score = 26.6 bits (59), Expect = 4.9
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 200 NQAGYQQQQQQQQQQQQQQQTLNS 223
+ QQ+ + ++ + + L
Sbjct: 15 DPGDAAQQEAKHREAEMRNSILAQ 38
Score = 26.6 bits (59), Expect = 6.1
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 201 QAGYQQQQQQQQQQQQQQQTLNSQ 224
G QQ+ + ++ + + ++ +Q
Sbjct: 15 DPGDAAQQEAKHREAEMRNSILAQ 38
>d2geca1 b.148.1.1 (A:23-160) Nucleocapsid protein {Avian infectious
bronchitis virus [TaxId: 11120]}
Length = 138
Score = 28.3 bits (63), Expect = 2.3
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 156 PPLPNSQQNSSNFQPSNNLYNNIQV-----PPRAQPGNYPSVPAGYPSLNQAGYQQQQQQ 210
PP S N+S FQ I+ P G+ + Q GY ++Q +
Sbjct: 2 PPKVGSSGNASWFQA-------IKAKKLNSPQPKFEGSGVPDNENLKTSQQHGYWRRQAR 54
Query: 211 QQQQQQQQQTLNS 223
+ + +++ +
Sbjct: 55 FKPGKGRRKPVPD 67
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.6 bits (63), Expect = 2.3
Identities = 2/64 (3%), Positives = 19/64 (29%)
Query: 87 VPQQFQRPQQQNANHSQQTFRMPPNTYSQSSKTAPFNNGLTPLTNASLYQQQQQQQQQQQ 146
+ Q ++ +++ + + ++ + ++ Q ++
Sbjct: 96 LIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRG 155
Query: 147 QQQQ 150
+ +
Sbjct: 156 EAKT 159
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
{Escherichia coli [TaxId: 562]}
Length = 362
Score = 28.8 bits (64), Expect = 3.1
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 93 RPQQQNANHSQQTFRM---PPNTYSQSSKTAPFNNGLTPLTN---ASLYQQQQQQQQQQQ 146
Q+ N ++ R+ P +Q + A LY+ + Q++ ++
Sbjct: 245 GAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEK 304
Query: 147 QQQQ 150
Q +
Sbjct: 305 QAME 308
>d1sska_ b.148.1.1 (A:) Nucleocapsid protein {SARS coronavirus,
(SARS-CoV) [TaxId: 227859]}
Length = 158
Score = 28.0 bits (62), Expect = 3.6
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 151 PIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSLNQAGYQQQQQQ 210
P + LPN +S F L + + R G + +Q GY ++ +
Sbjct: 16 PRGSAMGLPN--NTASWFTA---LTQHGKEELRFPRGQGVPINTNSGPDDQIGYYRRATR 70
Query: 211 QQQQQQQQQT 220
+ + +
Sbjct: 71 RVRGGDGKMK 80
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
{Adeno-associated virus, aav-2 [TaxId: 272636]}
Length = 519
Score = 28.3 bits (63), Expect = 4.3
Identities = 20/142 (14%), Positives = 34/142 (23%), Gaps = 12/142 (8%)
Query: 65 RPPLVTNRFQAPGATINSLSTPVPQQFQRPQQQNANHSQQTFRMPPNTYSQSSKTAPFNN 124
+ L + ++F PQ +Q T K +
Sbjct: 291 KYHLNGRDSLVNPGPAMASHKDDEEKFF-PQSGVLIFGKQGS---EKTNVDIEKVMITDE 346
Query: 125 GLTPLTNASLYQQQQQ-----QQQQQQQQQQPIPNIPPLPNSQQNSSNFQPSNNLYNNIQ 179
TN +Q Q+ +Q + LP + ++ I
Sbjct: 347 EEIRTTNPVATEQYGSVSTNLQRGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIWAKI- 405
Query: 180 VPPRAQPGNYPSVPAGYPSLNQ 201
P +PS G L
Sbjct: 406 --PHTDGHFHPSPLMGGFGLKH 425
>g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) [TaxId:
3708]}
Length = 106
Score = 27.1 bits (60), Expect = 4.4
Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 21/93 (22%)
Query: 136 QQQQQQQQQQQQQQ---------QPIPNIPPLPNSQQNSSNFQPSNNLYNNIQVPPRAQP 186
Q Q+ Q++ QQ+Q Q + P QQ + N
Sbjct: 1 QPQKCQREFQQEQHLRACQQWIRQQLAGSPFQSGPQQGPWLREQCCNELYQEDQVCVC-- 58
Query: 187 GNYPSVPAGYPSLNQAGYQQQQQQQQQQQQQQQ 219
P+L QA + Q Q Q +
Sbjct: 59 ----------PTLKQAAKSVRVQGQHGPFQSTR 81
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 26.7 bits (59), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 201 QAGYQQQQQQQQQQQQQQQTLNSQ 224
A +QQ QQQ Q Q+QT+ Q
Sbjct: 7 LAQFQQLQQQAQAISVQKQTVEMQ 30
>d1eu1a1 b.52.2.2 (A:626-780) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 155
Score = 27.4 bits (60), Expect = 5.0
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 882 DKNAGGMAYYEFLLRIRDYQASVLTTT---PPR 911
K A G L + Y + +T T P+
Sbjct: 121 SKLAQGNCGQTILADVEKYAGAPVTVTVFDTPK 153
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 103
Score = 25.9 bits (57), Expect = 8.9
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 649 DQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLAPSSLKL 708
DQ A L+A++AV ++ +D + + Y S + L
Sbjct: 1 DQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDD-PQSFRLAPNFSL 59
Query: 709 LPLYVLALLKHPAFRI 724
P + L + +
Sbjct: 60 YPQFTYYLRRSQFLSV 75
>d1zdya1 d.313.1.1 (A:3-303) Aromatic prenyltransferase
{Streptomyces sp. CL190 [TaxId: 93372]}
Length = 301
Score = 27.1 bits (60), Expect = 9.3
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 216 QQQQTLNSQFSNLSVNQGMNKMWGYEPHD-LLNTRDILPATKVEPPPIR 263
Q+ ++ + V G K + + P D + ++ + PP +
Sbjct: 97 QKHLPVSMFAIDGEVTGGFKKTYAFFPTDNMPGVAELSAIPSM-PPAVA 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,199,969
Number of extensions: 148355
Number of successful extensions: 768
Number of sequences better than 10.0: 1
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 62
Length of query: 912
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 818
Effective length of database: 1,116,976
Effective search space: 913686368
Effective search space used: 913686368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)