BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14674
(519 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30 ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
E EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 9 EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 68
Query: 90 GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
GIL MFAAK+GA +VIGIECS+I +YA +IV N L VVTI+KGKVEEVELP ++KVD
Sbjct: 69 GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 126
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD
Sbjct: 127 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 163
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
+A+L++ IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 164 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 216
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
++CL+KE+D+YT+ DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 217 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 276
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 277 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 336
Query: 390 YQV 392
Y++
Sbjct: 337 YRM 339
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
+PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 238 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 297
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 298 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 340
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 239/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30 ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
E EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 12 EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 71
Query: 90 GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
GIL MFAAK+GA +VIGIECS+I +YA +IV N L VVTI+KGKVEEVELP ++KVD
Sbjct: 72 GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 129
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD
Sbjct: 130 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 166
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
+A+L++ IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 167 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 219
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
++CL+KE+D+YT+ DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 220 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 279
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 280 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 339
Query: 390 YQV 392
Y++
Sbjct: 340 YRM 342
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
+PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 241 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 300
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 301 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 343
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 513 bits (1321), Expect = e-146, Method: Compositional matrix adjust.
Identities = 238/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30 ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
E EDMTS+DYYFDSYAHFGIHEEMLKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 22 EKPNAEDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 81
Query: 90 GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
GIL MFAAK+GA +VIGIECS+I +YA +IV N L VVTI+KGKVEEVELP ++KVD
Sbjct: 82 GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 139
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
IIISEWMGYCLFY+SML+TVL+ARDKWLA +GL+FPD
Sbjct: 140 IIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPD----------------------- 176
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
+A+L++ IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 177 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 229
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
++CL+KE+D+YT+ DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 230 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 289
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 290 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 349
Query: 390 YQV 392
Y++
Sbjct: 350 YRM 352
Score = 168 bits (425), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
+PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 251 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 310
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 311 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 353
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 238/363 (65%), Positives = 295/363 (81%), Gaps = 32/363 (8%)
Query: 30 ENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGT 89
E EDMTS+DYYFDSYAHFGIHEE+LKDEVRT+TYRNSM+HN+HLFK K+VLD+G GT
Sbjct: 18 EKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGT 77
Query: 90 GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
GIL MFAAK+GA +VIGIECS+I +YA +IV N L VVTI+KGKVEEVELP ++KVD
Sbjct: 78 GILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELP--VEKVD 135
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
IIISEWMGYCLFYESML+TVL+ARDKWLA +GL+FPD
Sbjct: 136 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD----------------------- 172
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVT 269
+A+L++ IEDRQYK+ KI WW+NVYGFDMSCIK +AIKEPLVDVVDPKQ+VT
Sbjct: 173 -------RATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVT 225
Query: 270 SSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA 329
++CL+KE+D+YT+ DL+FTSPF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+
Sbjct: 226 NACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPES 285
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S D
Sbjct: 286 PYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTD 345
Query: 390 YQV 392
Y++
Sbjct: 346 YRM 348
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 91/103 (88%)
Query: 417 APFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
+PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK G
Sbjct: 247 SPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTG 306
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
EE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 307 EEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/340 (49%), Positives = 220/340 (64%), Gaps = 34/340 (10%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
DYYFDSY H+GIHEEML+D VRT++YRN++ NK LFK KIVLD+GCGTGILSMFAAK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
A VIG++ S+I+E AKE+V+ N SD +T+L+GK+E+V LPF KVDIIISEWMGY L
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPF--PKVDIIISEWMGYFL 118
Query: 161 FYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL 220
YESM+DTVLYARD +L GL+FPD K S+
Sbjct: 119 LYESMMDTVLYARDHYLVEGGLIFPD------------------------------KCSI 148
Query: 221 FICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY 280
+ G+ED QYK++K+ +W +VYGFD S + + EP+VD V+ V T+S L E DL
Sbjct: 149 HLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN 208
Query: 281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTV 338
T+ +DL+F S F L +R D + +VT+F + F K + + FST P A YTHWKQT+
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268
Query: 339 FYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFK 378
FY + L + G+ + G PN +NNRDL+ + F+
Sbjct: 269 FYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFE 308
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 419 FTLQVRRNDYVQALVTFFSVEFS--KCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKG 476
F L +R D + +VT+F + F K + + FST P A YTHWKQT+FY + L + G
Sbjct: 221 FKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETG 280
Query: 477 EEVVGSFGMQPNPRNNRDLDFTVEVNFK 504
+ + G PN +NNRDL+ + F+
Sbjct: 281 DTIEGELVCSPNEKNNRDLNIKISYKFE 308
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 218/335 (65%), Gaps = 33/335 (9%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF SY H+GIHEEMLKD++RT +YR+ +Y N H+FK K+VLD+GCGTGILSMFAAK+GA
Sbjct: 29 YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
+V+G++ S I+ A +I+ N L D +T++KGK+EEV LP ++KVD+IISEWMGY L +
Sbjct: 89 KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--VEKVDVIISEWMGYFLLF 146
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
ESMLD+VLYA++K+LA G ++PD IC I +
Sbjct: 147 ESMLDSVLYAKNKYLAKGGSVYPD-----ICTIS-------------------------L 176
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTI 282
+ D D+I +WD+VYGF MSC+KK I E +V+V+DPK +++ C +K ID +T
Sbjct: 177 VAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTT 236
Query: 283 TKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYL 341
+ +DL F+S FTL++ R A+ +F + F K CH R+ FST P++ THWKQTVF L
Sbjct: 237 SISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLL 296
Query: 342 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
+ +VK GE + G + N ++ R L T+ +N
Sbjct: 297 EKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLN 331
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 400 GLRDRDCMYTKLYTI-VHAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHY 457
G++ DC T + + + FTL++ R A+ +F + F K CH R+ FST P++
Sbjct: 227 GIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTK 286
Query: 458 THWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 502
THWKQTVF L + +VK GE + G + N ++ R L T+ +N
Sbjct: 287 THWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLN 331
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 305 bits (782), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 152/335 (45%), Positives = 213/335 (63%), Gaps = 33/335 (9%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF SY H+GIHEEMLKD+VRT +YR+ +Y N H+FK K+VLD+GCGTGILSMFAAK+GA
Sbjct: 10 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 69
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
+VI ++ S I+ A +I+ N L D + ++KGK+EEV LP ++KVD+IISEWMGY L +
Sbjct: 70 KVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLP--VEKVDVIISEWMGYFLLF 127
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
ESMLD+VLYA+ K+LA G ++PD IC I +
Sbjct: 128 ESMLDSVLYAKSKYLAKGGSVYPD-----ICTIS-------------------------L 157
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYTI 282
+ D D+I +WD+VYGF+MSC+KK I E +V+VVD K +++ C +K ID +T
Sbjct: 158 VAVSDVSKHADRIAFWDDVYGFNMSCMKKAVIPEAVVEVVDHKTLISDPCDIKHIDCHTT 217
Query: 283 TKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYL 341
+ +DL F+S FTL+ + A+ +F + F K CH R+ FST P++ THWKQT+F L
Sbjct: 218 SISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTIFLL 277
Query: 342 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 376
+ VK GE + G + N ++ R L T+ +N
Sbjct: 278 EKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLN 312
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 401 LRDRDCMYTKLYTI-VHAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYT 458
++ DC T + + + FTL+ + A+ +F + F K CH R+ FST P++ T
Sbjct: 209 IKHIDCHTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKT 268
Query: 459 HWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVN 502
HWKQT+F L + VK GE + G + N ++ R L T+ +N
Sbjct: 269 HWKQTIFLLEKPFPVKAGEALKGKITVHKNKKDPRSLIVTLTLN 312
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 170/344 (49%), Gaps = 51/344 (14%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
Y++ Y+ +HEEM+ D VRT YR + N +GK VLD+G GTGILS+F A++GA
Sbjct: 48 YYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGAR 107
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
RV +E S I + A+E+V N L D V +L G VE VELP ++VD I+SEWMGY L +
Sbjct: 108 RVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVSEWMGYGLLH 164
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
ESML +VL+AR KWL GLL P A LFI I D
Sbjct: 165 ESMLSSVLHARTKWLKEGGLLLPASAELFIVPISD------------------------- 199
Query: 223 CGIEDRQYKEDKITWWDNV---YGFDMSCIKKIAIK------EPLVDVVDPKQVVTSSCL 273
Q E ++ +W V YG DMSC++ A + E +V + + V+
Sbjct: 200 ------QMLEWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQR 253
Query: 274 LKEIDLYTI---TKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPE 328
+++L + + F + + +F V F + K + ST+P
Sbjct: 254 FAQLELSRAGLEQELEAGVGGRFRCSCYGSAPMHGFAIWFQVTFPGGESEKPLVLSTSPF 313
Query: 329 AHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQP---NPRNNRDL 369
THWKQ + YLNE + V++ +V G + P NPR R L
Sbjct: 314 HPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVL 357
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 429 VQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQ 486
+ +F V F + K + ST+P THWKQ + YLNE + V++ +V G +
Sbjct: 286 MHGFAIWFQVTFPGGESEKPLVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLL 345
Query: 487 P---NPRNNRDL 495
P NPR R L
Sbjct: 346 PSRDNPRRLRVL 357
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 198/362 (54%), Gaps = 43/362 (11%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF +Y+ ++ML D VR Y N+++ NKH F+GK VLD+G G+GIL++++A++GA
Sbjct: 28 YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR 87
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
+V +E + + ++A+ +V NNL +V +++G VE++ LP +KVD+IISEWMGY L
Sbjct: 88 KVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLP---EKVDVIISEWMGYFLLR 144
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
ESM D+V+ ARD+WL G+++P A +++ I+ + K + F
Sbjct: 145 ESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADR--------------KRNDFD 190
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCI--------KKIAIKEPLVDVVDPKQVVTSSCLL 274
+ D D+I + YG DM + +K I+ + + ++P+Q++ + ++
Sbjct: 191 GAMADWHNFSDEIK---SYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIV 247
Query: 275 KEIDLYTITKADLSFTSPFTLQVRRNDYVQ--ALVTFFSVEFS-----KCHKRIGFSTAP 327
KE+D T + +++ V ++ + +F V+FS + I +TAP
Sbjct: 248 KEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAP 307
Query: 328 -EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSE 386
E H THW Q VF ++ + V++G+ + M + N+R ++ +E+N CE+ E
Sbjct: 308 SEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLME--IELN-----CEIKE 360
Query: 387 SN 388
++
Sbjct: 361 AS 362
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 435 FFSVEFS-----KCHKRIGFSTAP-EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPN 488
+F V+FS + I +TAP E H THW Q VF ++ + V++G+ + M +
Sbjct: 284 WFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRS 343
Query: 489 PRNNRDLDFTVEVNFKGELCEMSESN 514
N+R ++ +E+N CE+ E++
Sbjct: 344 KENHRLME--IELN-----CEIKEAS 362
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF Y + + M++D VRT TY+ ++ N FK KIVLD+GCG+GILS FAA++GA
Sbjct: 123 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 182
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
++ +E S + ++A+ +V NNL+D + ++ GKVEEV LP ++VDIIISE MGY LF
Sbjct: 183 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 239
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
E ML++ L+A+ K+L +G +FP + + D Q L++
Sbjct: 240 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 278
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
Q+ + + + +G D+S ++ A+ ++P+VD D + ++ + + ++
Sbjct: 279 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 332
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
+ DL PF + + V L +F V F + STAP THW Q
Sbjct: 333 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 392
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
L K G+ + G+ + N R + D+ +V+ G
Sbjct: 393 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 434
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
+ PF + + V L +F V F + STAP THW Q L K
Sbjct: 344 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 403
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
G+ + G+ + N R + D+ +V+ G
Sbjct: 404 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 434
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF Y + + M++D VRT TY+ ++ N FK KIVLD+GCG+GILS FAA++GA
Sbjct: 15 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 74
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
++ +E S + ++A+ +V NNL+D + ++ GKVEEV LP ++VDIIISE MGY LF
Sbjct: 75 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 131
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
E ML++ L+A+ K+L +G +FP + + D Q L++
Sbjct: 132 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 170
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
Q+ + + + +G D+S ++ A+ ++P+VD D + ++ + + ++
Sbjct: 171 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 224
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
+ DL PF + + V L +F V F + STAP THW Q
Sbjct: 225 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 284
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
L K G+ + G+ + N R + D+ +V+ G
Sbjct: 285 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 326
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
+ PF + + V L +F V F + STAP THW Q L K
Sbjct: 236 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 295
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
G+ + G+ + N R + D+ +V+ G
Sbjct: 296 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 326
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF Y + + M++D VRT TY+ ++ N FK KIVLD+GCG+GILS FAA++GA
Sbjct: 10 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 69
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
++ +E S + ++A+ +V NNL+D + ++ GKVEEV LP ++VDIIISE MGY LF
Sbjct: 70 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 126
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
E ML++ L+A+ K+L +G +FP + + D Q L++
Sbjct: 127 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 165
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
Q+ + + + +G D+S ++ A+ ++P+VD D + ++ + + ++
Sbjct: 166 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 219
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
+ DL PF + + V L +F V F + STAP THW Q
Sbjct: 220 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 279
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
L K G+ + G+ + N R + D+ +V+ G
Sbjct: 280 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 321
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
+ PF + + V L +F V F + STAP THW Q L K
Sbjct: 231 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 290
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
G+ + G+ + N R + D+ +V+ G
Sbjct: 291 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 321
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF Y + + M++D VRT TY+ ++ N FK KIVLD+GCG+GILS FAA++GA
Sbjct: 6 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 65
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
++ +E S + ++A+ +V NNL+D + ++ GKVEEV LP ++VDIIISE MGY LF
Sbjct: 66 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 122
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
E ML++ L+A+ K+L +G +FP + + D Q L++
Sbjct: 123 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 161
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
Q+ + + + +G D+S ++ A+ ++P+VD D + ++ + + ++
Sbjct: 162 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 215
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
+ DL PF + + V L +F V F + STAP THW Q
Sbjct: 216 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 275
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
L K G+ + G+ + N R + D+ +V+ G
Sbjct: 276 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 317
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
+ PF + + V L +F V F + STAP THW Q L K
Sbjct: 227 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 286
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
G+ + G+ + N R + D+ +V+ G
Sbjct: 287 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 317
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 174/342 (50%), Gaps = 35/342 (10%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
YF Y + + M++D VRT TY+ ++ N FK KIVLD+GCG+GILS FAA++GA
Sbjct: 11 YFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR 70
Query: 103 RVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
++ +E S + ++A+ +V NNL+D + ++ GKVEEV LP ++VDIIISE MGY LF
Sbjct: 71 KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISEPMGYMLFN 127
Query: 163 ESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222
E ML++ L+A+ K+L +G +FP + + D Q L++
Sbjct: 128 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQ--------------------LYM 166
Query: 223 CGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI----KEPLVDVVDPKQVVTSSCLLKEID 278
Q+ + + + +G D+S ++ A+ ++P+VD D + ++ + + ++
Sbjct: 167 -----EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVN 220
Query: 279 LYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQT 337
+ DL PF + + V L +F V F + STAP THW Q
Sbjct: 221 FLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQV 280
Query: 338 VFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 379
L K G+ + G+ + N R + D+ +V+ G
Sbjct: 281 RCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTG 322
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK 474
+ PF + + V L +F V F + STAP THW Q L K
Sbjct: 232 IEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 291
Query: 475 KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKG 505
G+ + G+ + N R + D+ +V+ G
Sbjct: 292 AGDTLSGTCLLIANKRQSYDISIVAQVDQTG 322
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
+ DIGCGTG ++F A ++ GI+ + +E E K N +D V + G ++
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD--N 107
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
LPF +++D+I SE Y + +E ++ K+L G + +AS F
Sbjct: 108 LPFQNEELDLIWSEGAIYNIGFERGMNE----WSKYLKKGGFIAVSEASWF 154
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
+ DIGCGTG ++F A ++ GI+ + +E E K N +D V + G ++
Sbjct: 56 IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD--N 113
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
LPF +++D+I SE Y + +E ++ K+L G + +AS F
Sbjct: 114 LPFQNEELDLIWSEGAIYNIGFERGMNE----WSKYLKKGGFIAVSEASWF 160
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS 110
F K VLD+GCG G ++AA+ GA +V+GI+ S
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS 76
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILK 133
+HL G VLD+G G+G+L++ A K G + +G++ +V E K N L+
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRN-GVRPRFLE 173
Query: 134 GKVEEVELPFGIQKVDIIIS 153
G + E LPFG D++++
Sbjct: 174 GSL-EAALPFG--PFDLLVA 190
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILK 133
+HL G VLD+G G+G+L++ A K G + +G++ +V E K N L+
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRN-GVRPRFLE 173
Query: 134 GKVEEVELPFGIQKVDIIIS 153
G + E LPFG D++++
Sbjct: 174 GSL-EAALPFG--PFDLLVA 190
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILK 133
+L + ++ DIGCGTG + A +V G++ S ++ ++ L + VT +
Sbjct: 43 NLTEKSLIADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102
Query: 134 GKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
G + +LPF +++D+I SE Y + +E L+ K+L G L + S F
Sbjct: 103 GSXD--DLPFRNEELDLIWSEGAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWF 154
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 60 EVRTMTYRNSMYHN--KHLFK-GKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEY 115
E ++ Y N++ N KH+ K K VLDIGC +G L A K RV GIE E
Sbjct: 11 EEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGA-AIKENGTRVSGIEAFPEAAEQ 69
Query: 116 AKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
AKE +D ++ G +E + P+ ++ D +I
Sbjct: 70 AKEKLDH--------VVLGDIETXDXPYEEEQFDCVI 98
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 81 IVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEV 139
++ D+GCGTG +M A+ ++ GI+ +E + +K NL + V + G ++
Sbjct: 50 LIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMD-- 107
Query: 140 ELPFGIQKVDIIISEWMGYCLFYESML 166
+L F +D+I SE Y + +E L
Sbjct: 108 DLSFEKDSLDLIWSEGAIYNIGFERGL 134
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 81 IVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEV 139
++ D+GCGTG +M A+ ++ GI+ +E + +K NL + V + G ++
Sbjct: 55 LIADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMD-- 112
Query: 140 ELPFGIQKVDIIISEWMGYCLFYESML 166
+L F +D+I SE Y + +E L
Sbjct: 113 DLSFEKDSLDLIWSEGAIYNIGFERGL 139
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNN 124
VLDIG G G M+ + A GI+ CSNIV A E V NN
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN 102
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNN 124
VLDIG G G M+ + A GI+ CSNIV A E V NN
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN 102
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNN 124
VLDIG G G M+ + A GI+ CSNIV A E V NN
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN 102
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 77 FKGKIVLDIGCGTGILSM-FAAKSGAARVIGIEC-SNIVEYAKEIV 120
F+G+ VLD+GC G L++ A K G +R +G++ S ++ A++ +
Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRXVGLDIDSRLIHSARQNI 90
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
KGKI+ D+ G GI+ + + A+++G+E + + AK V N L D + I++ +
Sbjct: 50 KGKII-DLCSGNGIIPLLLSTRTKAKIVGVEIQERLADXAKRSVAYNQLEDQIEIIEYDL 108
Query: 137 EEVELPFGIQKVDII 151
+++ ++ DI+
Sbjct: 109 KKITDLIPKERADIV 123
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 17/66 (25%)
Query: 69 SMYHNKHLF---------------KGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNI 112
++Y +KH F G+ +LD+GCGTG L+ A+SG A V+G + +
Sbjct: 33 TLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATX 91
Query: 113 VEYAKE 118
+E A++
Sbjct: 92 IEKARQ 97
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 47 YAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-ARVI 105
Y H E L+ + T ++H+ G VL+ GCG G ++ AK+ A +
Sbjct: 6 YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEIT 65
Query: 106 GIECS-NIVEYAKEIVDKNNLSDV 128
I+ S +E A+E +KN + +V
Sbjct: 66 SIDISPESLEKARENTEKNGIKNV 89
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVD 121
+GK+V D+G GTG+LS A GA VI C VE KE VD
Sbjct: 49 EGKVVADLGAGTGVLSYGALLLGAKEVI---C---VEVDKEAVD 86
>pdb|2XRI|A Chain A, Crystal Structure Of Human Eri1 Exoribonuclease 3
Length = 224
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 32/134 (23%)
Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL----FYESMLD------TVLYARDKWLATNG 181
L G+ E+E F + ++ + +C ++M+D VL D+W+A G
Sbjct: 60 LNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEG 119
Query: 182 LLFPDKASLFI-CGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDN 240
LL P+ S+F+ CG DL + + GQC + P D W N
Sbjct: 120 LLDPNVKSIFVTCGDWDL---KVMLPGQCQYLGLP---------------VADYFKQWIN 161
Query: 241 V---YGFDMSCIKK 251
+ Y F M C K
Sbjct: 162 LKKAYSFAMGCWPK 175
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS 126
N + K + G VLD+ TG ++ AA +GA VIGI+ S +E AKE N +
Sbjct: 207 NRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE 266
Query: 127 DVVTILKGKV-EEVE-LPFGIQKVDIII 152
D + G EE E L +K DI++
Sbjct: 267 DRXKFIVGSAFEEXEKLQKKGEKFDIVV 294
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 83 LDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN----NLSDVVTILKGKVEE 138
+DIG G G LS+ AK + ++ S ++ EI KN NL+D + I++G V
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFS---KHXNEIALKNIADANLNDRIQIVQGDVHN 104
Query: 139 VELPFGIQKVDIIISEWMGYCLFYESM 165
+ P D+I+S G F+E +
Sbjct: 105 I--PIEDNYADLIVSR--GSVFFWEDV 127
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 77 FKGKIVLDIGCGTGILSMFAAK--SGAARVIGIE--------CSNIVEYAKEIVDKNNLS 126
+G VLD+GCGTG A+K +VIG++ VEY E +
Sbjct: 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSR 141
Query: 127 DVVTILKGKVEEVEL--PFGI--QKVDIIIS 153
V LKG +E + P G+ VDI+IS
Sbjct: 142 SNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137
GK + DIGCGTG ++ A V G++ S +E A+E + N V
Sbjct: 34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEXLEIAQEKAXETNRH--VDFWVQDXR 89
Query: 138 EVELPFGIQKVDII 151
E+ELP + + I+
Sbjct: 90 ELELPEPVDAITIL 103
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 76 LFKGKIVLDIGCGTGI----LSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTI 131
L +G VLD+G G G LS + G I ++ +V YA E V+K L +V +
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQ-EEMVNYAWEKVNKLGLKNVEVL 93
Query: 132 LKGKVEEVELPFGIQKVDII 151
K EE ++P VD I
Sbjct: 94 ---KSEENKIPLPDNTVDFI 110
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL 141
VLD+G GTG S+F + G V+ +E A+E KN +++ K E++
Sbjct: 58 VLDLGGGTGKWSLFLQERGFEVVLVDPSKEXLEVAREKGVKN-------VVEAKAEDLPF 110
Query: 142 PFGIQKVDIIISEWMGYC 159
P G + + + + + Y
Sbjct: 111 PSGAFEAVLALGDVLSYV 128
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 78 KGKIVLDIGCGTGILSM-FAAKSGAARVIGIECSN-IVEYAKEIVDKNNL------SDVV 129
KGK VLD+GCG G+LS+ FA S R+ + S VE ++ + N + S+V
Sbjct: 197 KGK-VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVF 255
Query: 130 TILKGKVEEV 139
+ +KG+ + +
Sbjct: 256 SEVKGRFDXI 265
>pdb|2L5V|A Chain A, Solution Structure Of The C-Terminal Domain Of Hrpn13
Length = 150
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 13 AKSSNSKPSQQNGDSKDENVQCEDMT 38
A +N+KP Q+ GD+KD+ + EDM+
Sbjct: 123 AMQNNAKPEQKEGDTKDKKDEEEDMS 148
>pdb|2KQZ|A Chain A, Fragment Of Proteasome Protein
Length = 155
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 13 AKSSNSKPSQQNGDSKDENVQCEDMT 38
A +N+KP Q+ GD+KD+ + EDM+
Sbjct: 128 AMQNNAKPEQKEGDTKDKKDEEEDMS 153
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEE 138
K V DIG G+G + + AK A V + S+ VE A++ +++ +SD + KG+ E
Sbjct: 123 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 182
Query: 139 VELPF 143
PF
Sbjct: 183 ---PF 184
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEE 138
K V DIG G+G + + AK A V + S+ VE A++ +++ +SD + KG+ E
Sbjct: 135 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 194
Query: 139 VELPF 143
PF
Sbjct: 195 ---PF 196
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEE 138
K V DIG G+G + + AK A V + S+ VE A++ +++ +SD + KG+ E
Sbjct: 125 KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 184
Query: 139 VELPF 143
PF
Sbjct: 185 ---PF 186
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEV 139
VLD+ CGTGI ++ A+ G V+G++ ++ A+ + NL + L+G V E+
Sbjct: 45 VLDLACGTGIPTLELAERGYE-VVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEI 100
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN 111
+ + K V D+G G+GIL++ A K GA V+ + S+
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISD 93
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
+F Y+ G E L R + G ++D+GCG G +A + GA+
Sbjct: 12 FFAGYSQLGRSIEGLDGAAEWPALRAXLPE----VGGLRIVDLGCGFGWFCRWAHEHGAS 67
Query: 103 RVIGIECSN 111
V+G++ S
Sbjct: 68 YVLGLDLSE 76
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 15/57 (26%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG 134
+G+ VLD+G G G L++ A+ G A V+G+E ++L+ V+++ KG
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVE--------------DDLASVLSLQKG 274
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 15/57 (26%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG 134
+G+ VLD+G G G L++ A+ G A V+G+E ++L+ V+++ KG
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVE--------------DDLASVLSLQKG 274
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIV-DKNNLSDVVTILK 133
L G +LD+GCG G M A + V+G+ S N + +++V + NL +L
Sbjct: 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA 121
Query: 134 G 134
G
Sbjct: 122 G 122
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE 108
+++ L GK V ++G G G++S+ A +GA +V+ +
Sbjct: 69 DTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATD 109
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 12/71 (16%)
Query: 75 HLFKGKIVLDIGCGTGILSM-FAAKSG-AARVIGIECSNIVEYAKEIVDK--NNL--SDV 128
L +G LD+G G+GIL+ FA G +VIGI ++ KE+VD NN+ D
Sbjct: 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGI------DHIKELVDDSVNNVRKDDP 127
Query: 129 VTILKGKVEEV 139
+ G+V+ V
Sbjct: 128 TLLSSGRVQLV 138
>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|B Chain B, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|C Chain C, Human Methyltransferase 10 Domain Containing Protein
Length = 254
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 83 LDIGCGTG-ILSMFAAKSGAARVIGIECSNIV-EYAKEIVDKNNLSDVVTILK 133
+DIG G I + A + E ++ YAK+ V++NNLSD++ ++K
Sbjct: 70 IDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK 122
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE-YAKEIVDKN 123
+ N + +L K +VL+IG G GIL+ AK+ A +V IE +E YA ++ +
Sbjct: 10 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKE-- 66
Query: 124 NLSDVVTILKGKVEEVEL 141
L + + I+ G +V+L
Sbjct: 67 -LYNNIEIIWGDALKVDL 83
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE-YAKEIVDKN 123
+ N + +L K +VL+IG G GIL+ AK+ A +V IE +E YA ++ +
Sbjct: 8 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKE-- 64
Query: 124 NLSDVVTILKGKVEEVEL 141
L + + I+ G +V+L
Sbjct: 65 -LYNNIEIIWGDALKVDL 81
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 27/104 (25%)
Query: 36 DMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKG-KIVLDIGCGTGILSM 94
D+ + DYYF F E++K +R R Y FKG + VLDIGCG G
Sbjct: 7 DIHTSDYYFLFEEKFRGSRELVKARLR----RYIPY-----FKGCRRVLDIGCGRGEFLE 57
Query: 95 FAAKSGAARVIGIEC----------------SNIVEYAKEIVDK 122
+ G IG++ S+ +EY K + DK
Sbjct: 58 LCKEEGIES-IGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDK 100
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEV 139
VLD+GC G S+ A GA ++GI+ + + N G++EEV
Sbjct: 70 VLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEV 126
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE-YAKEIVDKN 123
+ N + +L K +VL+IG G GIL+ AK+ A +V IE +E YA ++ +
Sbjct: 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKE-- 93
Query: 124 NLSDVVTILKGKVEEVEL 141
L + + I+ G +V+L
Sbjct: 94 -LYNNIEIIWGDALKVDL 110
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILK-GKVEEV 139
VLD+GC G S+ A GA ++GI+ + + + ++N D + G++EEV
Sbjct: 70 VLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEEN--PDFAAEFRVGRIEEV 126
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILK-GKVEEV 139
VLD+GC G S+ A GA ++GI+ + + + ++N D + G++EEV
Sbjct: 70 VLDLGCAQGFFSLSLASKGAT-IVGIDFQQENINVCRALAEEN--PDFAAEFRVGRIEEV 126
>pdb|2KR0|A Chain A, A Proteasome Protein
Length = 411
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 13 AKSSNSKPSQQNGDSKDENVQCEDMT 38
A +N+KP Q+ GD+KD+ + EDM+
Sbjct: 384 AMQNNAKPEQKEGDTKDKKDEEEDMS 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,149,871
Number of Sequences: 62578
Number of extensions: 703654
Number of successful extensions: 1455
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1377
Number of HSP's gapped (non-prelim): 97
length of query: 519
length of database: 14,973,337
effective HSP length: 103
effective length of query: 416
effective length of database: 8,527,803
effective search space: 3547566048
effective search space used: 3547566048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)