Query psy14674
Match_columns 519
No_of_seqs 681 out of 3883
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:42:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499|consensus 100.0 3.5E-72 7.6E-77 548.5 28.2 328 34-393 16-346 (346)
2 KOG1500|consensus 100.0 5.7E-53 1.2E-57 403.9 19.6 322 35-395 134-465 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 3.3E-39 7.1E-44 337.3 19.3 263 52-362 152-436 (448)
4 KOG1499|consensus 100.0 4.7E-29 1E-33 245.0 12.5 123 397-519 220-346 (346)
5 KOG0822|consensus 99.9 1.8E-21 3.8E-26 197.9 13.1 261 53-362 335-613 (649)
6 KOG1501|consensus 99.8 7.5E-20 1.6E-24 181.9 13.3 270 52-343 34-320 (636)
7 PTZ00357 methyltransferase; Pr 99.7 6.8E-17 1.5E-21 168.6 19.9 254 81-367 703-1029(1072)
8 COG2226 UbiE Methylase involve 99.7 1.9E-16 4.1E-21 151.7 12.1 115 64-184 37-153 (238)
9 PF12847 Methyltransf_18: Meth 99.7 2.2E-16 4.8E-21 135.0 11.0 107 78-187 1-111 (112)
10 KOG1500|consensus 99.7 1.6E-16 3.5E-21 153.6 9.0 106 399-505 348-453 (517)
11 COG2230 Cfa Cyclopropane fatty 99.7 2.6E-16 5.6E-21 153.3 9.5 169 68-249 62-235 (283)
12 PF01209 Ubie_methyltran: ubiE 99.6 9E-16 1.9E-20 148.4 9.8 109 70-184 39-150 (233)
13 PF02353 CMAS: Mycolic acid cy 99.6 6E-16 1.3E-20 152.9 6.6 173 68-250 52-230 (273)
14 COG2227 UbiG 2-polyprenyl-3-me 99.6 2E-15 4.4E-20 142.2 8.0 105 77-189 58-163 (243)
15 PLN02396 hexaprenyldihydroxybe 99.6 1.9E-14 4.2E-19 145.2 11.8 107 77-189 130-237 (322)
16 PLN02233 ubiquinone biosynthes 99.5 5.1E-14 1.1E-18 139.0 13.0 117 66-187 61-182 (261)
17 PRK11207 tellurite resistance 99.5 5E-14 1.1E-18 133.2 12.1 104 75-184 27-131 (197)
18 PF08241 Methyltransf_11: Meth 99.5 2.9E-14 6.4E-19 117.5 9.1 94 83-185 1-95 (95)
19 PRK00107 gidB 16S rRNA methylt 99.5 7.4E-14 1.6E-18 130.4 12.7 104 75-189 42-147 (187)
20 PF13847 Methyltransf_31: Meth 99.5 6.8E-14 1.5E-18 126.7 11.7 106 77-189 2-112 (152)
21 TIGR00477 tehB tellurite resis 99.5 3.7E-14 8.1E-19 133.9 10.3 103 75-184 27-130 (195)
22 PF03848 TehB: Tellurite resis 99.5 1.1E-13 2.3E-18 128.7 12.1 106 74-186 26-132 (192)
23 TIGR02752 MenG_heptapren 2-hep 99.5 1.1E-13 2.3E-18 134.4 12.7 115 66-186 33-150 (231)
24 KOG1270|consensus 99.5 1.3E-14 2.8E-19 137.4 6.0 102 79-189 90-197 (282)
25 PLN02244 tocopherol O-methyltr 99.5 1.2E-13 2.7E-18 141.4 13.4 106 77-187 117-223 (340)
26 PF06325 PrmA: Ribosomal prote 99.5 1.2E-13 2.5E-18 137.3 9.9 100 76-187 159-259 (295)
27 TIGR00138 gidB 16S rRNA methyl 99.5 3.3E-13 7.1E-18 125.7 11.8 101 78-189 42-144 (181)
28 COG2264 PrmA Ribosomal protein 99.5 1.4E-13 3E-18 135.4 9.6 103 76-187 160-263 (300)
29 KOG1540|consensus 99.5 5.1E-13 1.1E-17 125.8 12.7 113 67-184 89-211 (296)
30 PRK11036 putative S-adenosyl-L 99.5 3.1E-13 6.8E-18 133.1 12.0 104 77-186 43-148 (255)
31 TIGR00452 methyltransferase, p 99.5 4.1E-13 8.8E-18 135.0 12.7 114 69-188 112-226 (314)
32 PRK15068 tRNA mo(5)U34 methylt 99.4 6.4E-13 1.4E-17 134.9 12.6 109 73-187 117-226 (322)
33 PF05175 MTS: Methyltransferas 99.4 9.2E-13 2E-17 121.7 12.4 104 78-185 31-138 (170)
34 PRK15451 tRNA cmo(5)U34 methyl 99.4 5.4E-13 1.2E-17 130.8 10.6 107 76-187 54-164 (247)
35 PRK12335 tellurite resistance 99.4 5.9E-13 1.3E-17 133.4 11.0 101 77-184 119-220 (287)
36 COG4123 Predicted O-methyltran 99.4 5.7E-13 1.2E-17 127.8 9.6 109 76-184 42-167 (248)
37 PF13659 Methyltransf_26: Meth 99.4 9E-13 2E-17 113.6 9.1 105 79-185 1-113 (117)
38 PTZ00098 phosphoethanolamine N 99.4 1.6E-12 3.5E-17 128.5 11.5 112 70-187 44-156 (263)
39 PF13649 Methyltransf_25: Meth 99.4 6.5E-13 1.4E-17 111.6 7.3 95 82-181 1-101 (101)
40 TIGR02469 CbiT precorrin-6Y C5 99.4 5.2E-12 1.1E-16 109.6 13.0 108 73-188 14-123 (124)
41 PRK10258 biotin biosynthesis p 99.4 1.7E-12 3.6E-17 127.7 10.9 102 74-187 38-140 (251)
42 PF05185 PRMT5: PRMT5 arginine 99.4 1.4E-12 2.9E-17 137.3 10.8 73 413-488 360-436 (448)
43 PRK13944 protein-L-isoaspartat 99.4 4.5E-12 9.7E-17 120.7 12.8 107 70-187 64-173 (205)
44 PRK11873 arsM arsenite S-adeno 99.4 3.3E-12 7.1E-17 127.1 12.1 108 74-187 73-183 (272)
45 TIGR00406 prmA ribosomal prote 99.4 4E-12 8.7E-17 127.4 12.5 102 76-187 157-259 (288)
46 PF05401 NodS: Nodulation prot 99.4 2.3E-12 5E-17 118.4 9.4 106 77-189 42-148 (201)
47 TIGR00740 methyltransferase, p 99.4 3.6E-12 7.8E-17 124.4 11.2 106 77-187 52-161 (239)
48 PRK15001 SAM-dependent 23S rib 99.4 6.6E-12 1.4E-16 129.1 13.4 106 78-186 228-339 (378)
49 smart00828 PKS_MT Methyltransf 99.3 3E-12 6.5E-17 123.6 9.9 102 80-187 1-104 (224)
50 PRK14103 trans-aconitate 2-met 99.3 4.4E-12 9.5E-17 125.0 10.9 103 70-186 21-125 (255)
51 PRK01683 trans-aconitate 2-met 99.3 4.5E-12 9.8E-17 125.1 10.5 107 69-187 22-130 (258)
52 PLN02336 phosphoethanolamine N 99.3 7.1E-12 1.5E-16 134.7 12.8 108 73-187 261-369 (475)
53 PRK00377 cbiT cobalt-precorrin 99.3 1.2E-11 2.5E-16 117.2 12.5 111 72-189 34-147 (198)
54 PRK06922 hypothetical protein; 99.3 7.3E-12 1.6E-16 134.4 11.7 109 75-187 415-537 (677)
55 PRK08287 cobalt-precorrin-6Y C 99.3 1.9E-11 4.2E-16 114.6 13.3 103 74-187 27-131 (187)
56 PRK11705 cyclopropane fatty ac 99.3 1.7E-11 3.7E-16 127.3 13.7 110 69-188 158-268 (383)
57 TIGR00080 pimt protein-L-isoas 99.3 1.2E-11 2.7E-16 118.6 11.7 106 70-187 69-177 (215)
58 PRK13942 protein-L-isoaspartat 99.3 1.4E-11 3E-16 117.9 11.7 106 70-187 68-176 (212)
59 TIGR00537 hemK_rel_arch HemK-r 99.3 1.3E-11 2.8E-16 115.0 11.2 105 76-187 17-140 (179)
60 PRK00121 trmB tRNA (guanine-N( 99.3 9E-12 2E-16 118.3 10.2 109 78-189 40-158 (202)
61 PF08242 Methyltransf_12: Meth 99.3 7.2E-13 1.6E-17 110.8 1.9 97 83-183 1-99 (99)
62 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.4E-11 3.1E-16 124.8 11.4 100 77-185 112-213 (340)
63 TIGR03533 L3_gln_methyl protei 99.3 3.1E-11 6.8E-16 120.5 13.4 109 78-189 121-253 (284)
64 PRK08317 hypothetical protein; 99.3 3.3E-11 7.2E-16 116.9 13.2 116 66-188 7-125 (241)
65 PRK14967 putative methyltransf 99.3 3.2E-11 7E-16 116.4 13.0 108 74-186 32-158 (223)
66 PRK00517 prmA ribosomal protei 99.3 1.6E-11 3.5E-16 120.5 10.9 96 76-187 117-213 (250)
67 PRK00216 ubiE ubiquinone/menaq 99.3 3.6E-11 7.8E-16 116.8 12.6 109 72-185 45-156 (239)
68 PF08003 Methyltransf_9: Prote 99.3 3.2E-11 7E-16 117.8 11.7 109 75-189 112-221 (315)
69 PRK15128 23S rRNA m(5)C1962 me 99.3 2.2E-11 4.7E-16 126.7 11.2 113 77-189 219-341 (396)
70 TIGR01177 conserved hypothetic 99.3 3.3E-11 7.1E-16 123.2 11.9 115 69-187 173-294 (329)
71 KOG4300|consensus 99.3 2.7E-11 5.8E-16 110.8 9.7 99 81-185 79-180 (252)
72 COG2242 CobL Precorrin-6B meth 99.3 6.8E-11 1.5E-15 107.9 12.4 119 56-189 17-137 (187)
73 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 5.8E-11 1.3E-15 114.1 12.6 110 68-185 29-141 (223)
74 PRK14966 unknown domain/N5-glu 99.2 5.5E-11 1.2E-15 122.5 12.3 134 51-189 226-383 (423)
75 PRK11805 N5-glutamine S-adenos 99.2 7E-11 1.5E-15 119.2 12.7 107 80-189 135-265 (307)
76 TIGR00091 tRNA (guanine-N(7)-) 99.2 3.9E-11 8.5E-16 113.2 10.1 109 78-189 16-134 (194)
77 TIGR00536 hemK_fam HemK family 99.2 4.8E-11 1E-15 119.4 11.3 107 80-189 116-246 (284)
78 COG2813 RsmC 16S RNA G1207 met 99.2 6.5E-11 1.4E-15 116.0 11.7 111 69-184 149-263 (300)
79 TIGR02021 BchM-ChlM magnesium 99.2 8.4E-11 1.8E-15 113.1 12.5 105 76-187 53-158 (219)
80 COG4076 Predicted RNA methylas 99.2 1.5E-11 3.2E-16 110.5 6.4 134 51-195 9-143 (252)
81 PRK09489 rsmC 16S ribosomal RN 99.2 8.5E-11 1.8E-15 120.1 12.5 103 78-186 196-302 (342)
82 PF13489 Methyltransf_23: Meth 99.2 3.6E-11 7.9E-16 109.2 8.7 97 76-189 20-117 (161)
83 KOG1271|consensus 99.2 6.4E-11 1.4E-15 106.2 9.7 112 76-189 64-183 (227)
84 TIGR02716 C20_methyl_CrtF C-20 99.2 1.2E-10 2.7E-15 117.8 13.1 116 68-188 139-255 (306)
85 PRK05785 hypothetical protein; 99.2 5E-11 1.1E-15 115.1 9.7 90 78-181 51-141 (226)
86 PRK05134 bifunctional 3-demeth 99.2 9.8E-11 2.1E-15 113.7 11.8 107 74-187 44-151 (233)
87 TIGR01983 UbiG ubiquinone bios 99.2 1.5E-10 3.2E-15 111.6 12.9 139 42-188 11-150 (224)
88 PRK07402 precorrin-6B methylas 99.2 1.6E-10 3.4E-15 109.3 12.7 110 71-189 33-144 (196)
89 PLN03075 nicotianamine synthas 99.2 1.9E-10 4E-15 113.8 13.5 108 78-189 123-235 (296)
90 PRK11783 rlmL 23S rRNA m(2)G24 99.2 5.3E-11 1.1E-15 133.0 10.8 112 77-189 537-658 (702)
91 PRK00312 pcm protein-L-isoaspa 99.2 1.6E-10 3.4E-15 110.7 12.5 104 71-187 71-175 (212)
92 PRK04266 fibrillarin; Provisio 99.2 1.2E-10 2.6E-15 112.1 11.6 103 73-186 67-175 (226)
93 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.4E-10 3E-15 110.8 11.9 104 77-186 33-151 (213)
94 PRK14968 putative methyltransf 99.2 1.5E-10 3.3E-15 108.2 12.0 107 77-187 22-148 (188)
95 COG2518 Pcm Protein-L-isoaspar 99.2 6.8E-11 1.5E-15 110.3 9.4 105 71-188 65-170 (209)
96 COG2890 HemK Methylase of poly 99.2 1.1E-10 2.3E-15 116.1 11.2 129 55-189 88-240 (280)
97 TIGR02072 BioC biotin biosynth 99.2 1.3E-10 2.7E-15 112.9 11.3 101 77-187 33-135 (240)
98 PRK01544 bifunctional N5-gluta 99.2 9.1E-11 2E-15 126.1 11.0 137 50-189 86-271 (506)
99 PLN02336 phosphoethanolamine N 99.2 1.2E-10 2.6E-15 125.1 12.0 110 72-188 31-143 (475)
100 TIGR03587 Pse_Me-ase pseudamin 99.2 1.2E-10 2.6E-15 110.6 10.3 93 75-177 40-134 (204)
101 PLN02781 Probable caffeoyl-CoA 99.2 1.1E-10 2.4E-15 113.2 9.8 110 75-190 65-181 (234)
102 PRK10909 rsmD 16S rRNA m(2)G96 99.2 2.3E-10 4.9E-15 107.9 11.4 107 77-189 52-161 (199)
103 smart00138 MeTrc Methyltransfe 99.2 1.2E-10 2.6E-15 115.1 9.8 111 76-189 97-244 (264)
104 COG2519 GCD14 tRNA(1-methylade 99.1 3.6E-10 7.8E-15 107.7 11.7 110 69-189 85-197 (256)
105 TIGR03534 RF_mod_PrmC protein- 99.1 5.4E-10 1.2E-14 109.6 13.4 106 78-187 87-217 (251)
106 PRK06202 hypothetical protein; 99.1 2.3E-10 5.1E-15 111.1 10.4 101 76-184 58-164 (232)
107 PRK13255 thiopurine S-methyltr 99.1 4.6E-10 1E-14 107.6 12.0 103 76-184 35-152 (218)
108 PRK09328 N5-glutamine S-adenos 99.1 3.2E-10 6.9E-15 112.9 11.3 125 60-188 90-239 (275)
109 PF01135 PCMT: Protein-L-isoas 99.1 1.7E-10 3.8E-15 109.5 8.1 105 69-185 63-170 (209)
110 TIGR03704 PrmC_rel_meth putati 99.1 8.3E-10 1.8E-14 108.3 13.1 108 78-189 86-218 (251)
111 PHA03412 putative methyltransf 99.1 2.5E-10 5.5E-15 108.8 9.1 103 78-189 49-165 (241)
112 COG4106 Tam Trans-aconitate me 99.1 1.1E-10 2.3E-15 107.8 6.2 106 72-189 24-131 (257)
113 PRK11188 rrmJ 23S rRNA methylt 99.1 3.4E-10 7.3E-15 108.0 9.9 98 76-186 49-164 (209)
114 PRK04457 spermidine synthase; 99.1 3.7E-10 8E-15 111.5 10.5 110 77-187 65-177 (262)
115 PRK14121 tRNA (guanine-N(7)-)- 99.1 5.5E-10 1.2E-14 114.4 12.0 110 77-189 121-237 (390)
116 TIGR00095 RNA methyltransferas 99.1 7.8E-10 1.7E-14 103.7 11.5 109 77-189 48-161 (189)
117 PRK11088 rrmA 23S rRNA methylt 99.1 2.7E-10 5.9E-15 113.3 8.6 91 77-185 84-179 (272)
118 PRK07580 Mg-protoporphyrin IX 99.1 8.7E-10 1.9E-14 106.7 11.9 102 76-184 61-163 (230)
119 COG2263 Predicted RNA methylas 99.1 1.1E-09 2.3E-14 99.8 11.4 76 74-156 41-117 (198)
120 TIGR00446 nop2p NOL1/NOP2/sun 99.1 8E-10 1.7E-14 109.4 11.6 113 74-189 67-201 (264)
121 PRK13943 protein-L-isoaspartat 99.1 1E-09 2.2E-14 110.9 12.6 103 72-186 74-179 (322)
122 PRK14901 16S rRNA methyltransf 99.1 9.6E-10 2.1E-14 116.5 12.6 115 74-189 248-386 (434)
123 PRK10901 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 115.3 13.2 114 74-189 240-374 (427)
124 PRK14904 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 116.0 13.2 112 74-189 246-379 (445)
125 smart00650 rADc Ribosomal RNA 99.1 9.8E-10 2.1E-14 101.3 10.5 109 70-188 5-114 (169)
126 PRK14902 16S rRNA methyltransf 99.0 1.5E-09 3.2E-14 115.5 13.1 114 74-189 246-381 (444)
127 TIGR00563 rsmB ribosomal RNA s 99.0 1.3E-09 2.8E-14 115.3 12.3 116 74-189 234-370 (426)
128 PRK14903 16S rRNA methyltransf 99.0 1.2E-09 2.6E-14 115.4 11.9 113 74-189 233-368 (431)
129 TIGR03438 probable methyltrans 99.0 2E-09 4.3E-14 108.6 12.7 113 76-189 61-179 (301)
130 COG1092 Predicted SAM-dependen 99.0 8E-10 1.7E-14 113.5 9.8 113 77-189 216-338 (393)
131 PF01596 Methyltransf_3: O-met 99.0 1.9E-09 4.1E-14 102.1 11.3 111 76-192 43-160 (205)
132 PF10672 Methyltrans_SAM: S-ad 99.0 1.7E-09 3.8E-14 106.9 11.5 130 53-189 104-240 (286)
133 PHA03411 putative methyltransf 99.0 7.6E-10 1.7E-14 107.9 8.5 98 78-184 64-180 (279)
134 PRK00811 spermidine synthase; 99.0 1.5E-09 3.2E-14 108.5 10.6 112 77-189 75-193 (283)
135 cd02440 AdoMet_MTases S-adenos 99.0 2.2E-09 4.8E-14 88.5 10.1 101 81-186 1-103 (107)
136 PLN02585 magnesium protoporphy 99.0 2E-09 4.3E-14 108.6 11.5 100 77-184 143-247 (315)
137 KOG2904|consensus 99.0 2.6E-09 5.6E-14 101.9 11.5 131 59-189 126-287 (328)
138 PLN02476 O-methyltransferase 99.0 2E-09 4.4E-14 105.9 10.2 109 75-189 115-230 (278)
139 COG4976 Predicted methyltransf 99.0 8.6E-11 1.9E-15 109.1 -0.1 108 72-189 119-227 (287)
140 PTZ00146 fibrillarin; Provisio 99.0 3.4E-09 7.3E-14 104.6 10.8 103 74-186 128-236 (293)
141 TIGR00438 rrmJ cell division p 99.0 2.2E-09 4.8E-14 100.7 9.2 100 74-186 28-145 (188)
142 PF08704 GCD14: tRNA methyltra 98.9 3.9E-09 8.5E-14 102.3 10.5 111 69-187 31-146 (247)
143 COG4122 Predicted O-methyltran 98.9 3.2E-09 6.9E-14 100.6 9.5 109 75-189 56-168 (219)
144 PLN02672 methionine S-methyltr 98.9 5.1E-09 1.1E-13 119.5 12.8 144 51-195 90-286 (1082)
145 PRK03522 rumB 23S rRNA methylu 98.9 4.4E-09 9.6E-14 106.8 11.1 104 77-189 172-276 (315)
146 PF10294 Methyltransf_16: Puta 98.9 2.9E-09 6.3E-14 98.5 8.9 107 74-185 41-154 (173)
147 PF03291 Pox_MCEL: mRNA cappin 98.9 8.4E-09 1.8E-13 104.7 12.6 110 78-187 62-186 (331)
148 PF03602 Cons_hypoth95: Conser 98.9 2.1E-09 4.5E-14 100.1 7.5 110 77-189 41-155 (183)
149 PRK13256 thiopurine S-methyltr 98.9 6.9E-09 1.5E-13 99.3 11.1 108 76-185 41-161 (226)
150 PRK13168 rumA 23S rRNA m(5)U19 98.9 7.6E-09 1.6E-13 110.0 12.1 117 64-189 283-402 (443)
151 COG0742 N6-adenine-specific me 98.9 1.5E-08 3.2E-13 93.2 11.8 113 76-189 41-156 (187)
152 KOG1541|consensus 98.9 9.4E-09 2E-13 95.2 9.5 102 78-187 50-160 (270)
153 TIGR02081 metW methionine bios 98.9 7.8E-09 1.7E-13 97.5 9.1 99 76-187 11-112 (194)
154 PLN02366 spermidine synthase 98.8 1.6E-08 3.5E-13 101.6 10.9 111 77-189 90-208 (308)
155 PRK01581 speE spermidine synth 98.8 2E-08 4.4E-13 101.6 10.4 113 76-189 148-270 (374)
156 COG1041 Predicted DNA modifica 98.8 2.1E-08 4.6E-13 100.2 10.3 119 66-188 185-311 (347)
157 TIGR00479 rumA 23S rRNA (uraci 98.8 2.1E-08 4.6E-13 106.4 11.0 110 69-186 283-395 (431)
158 PLN02589 caffeoyl-CoA O-methyl 98.8 2.1E-08 4.5E-13 97.6 9.5 110 76-191 77-194 (247)
159 TIGR02085 meth_trns_rumB 23S r 98.8 2.5E-08 5.5E-13 103.6 10.5 104 77-189 232-336 (374)
160 PF07021 MetW: Methionine bios 98.8 1.4E-08 2.9E-13 93.6 7.4 103 75-190 10-115 (193)
161 KOG2899|consensus 98.8 2.8E-08 6.2E-13 93.3 9.6 114 74-187 54-209 (288)
162 KOG1975|consensus 98.8 1.8E-08 3.9E-13 98.3 8.5 116 74-189 113-239 (389)
163 PF01170 UPF0020: Putative RNA 98.8 4E-08 8.6E-13 91.4 10.0 121 65-187 15-151 (179)
164 TIGR00417 speE spermidine synt 98.8 4.1E-08 9E-13 97.5 10.7 112 77-189 71-188 (270)
165 PTZ00338 dimethyladenosine tra 98.7 4.3E-08 9.2E-13 98.1 9.9 85 69-158 27-112 (294)
166 PRK03612 spermidine synthase; 98.7 2.8E-08 6E-13 107.6 8.9 112 77-189 296-417 (521)
167 PRK14896 ksgA 16S ribosomal RN 98.7 6.9E-08 1.5E-12 95.2 10.0 82 69-158 20-102 (258)
168 PF02475 Met_10: Met-10+ like- 98.7 5.8E-08 1.3E-12 91.4 8.9 99 75-183 98-198 (200)
169 PF05724 TPMT: Thiopurine S-me 98.7 8E-08 1.7E-12 92.0 9.2 107 75-184 34-152 (218)
170 KOG3010|consensus 98.7 1.6E-08 3.4E-13 95.3 3.6 97 81-184 36-134 (261)
171 PRK00274 ksgA 16S ribosomal RN 98.6 8.3E-08 1.8E-12 95.4 8.9 80 70-156 34-114 (272)
172 PF02390 Methyltransf_4: Putat 98.6 1.6E-07 3.5E-12 88.5 9.4 106 81-189 20-135 (195)
173 COG2521 Predicted archaeal met 98.6 2.7E-08 5.8E-13 93.0 3.9 113 75-189 131-247 (287)
174 PRK11727 23S rRNA mA1618 methy 98.6 1.7E-07 3.7E-12 94.4 9.8 81 78-158 114-200 (321)
175 TIGR00478 tly hemolysin TlyA f 98.6 1.5E-07 3.2E-12 90.6 8.4 99 67-184 64-168 (228)
176 KOG2361|consensus 98.6 1.4E-07 3E-12 88.9 7.4 106 81-189 74-185 (264)
177 PF00891 Methyltransf_2: O-met 98.5 4.8E-07 1E-11 88.3 10.9 105 69-186 91-198 (241)
178 PRK04338 N(2),N(2)-dimethylgua 98.5 2.1E-07 4.6E-12 96.5 8.4 98 79-186 58-157 (382)
179 TIGR02143 trmA_only tRNA (urac 98.5 4.8E-07 1E-11 93.2 10.2 100 80-189 199-313 (353)
180 PF02527 GidB: rRNA small subu 98.5 1.3E-06 2.8E-11 81.3 12.0 98 81-189 51-150 (184)
181 KOG3191|consensus 98.5 1E-06 2.2E-11 79.6 10.6 103 79-186 44-167 (209)
182 PLN02823 spermine synthase 98.5 5.4E-07 1.2E-11 91.7 9.6 110 78-188 103-221 (336)
183 KOG0820|consensus 98.5 6.1E-07 1.3E-11 85.9 9.0 87 65-156 45-132 (315)
184 PLN02232 ubiquinone biosynthes 98.5 3E-07 6.4E-12 84.0 6.6 78 105-187 1-81 (160)
185 PRK05031 tRNA (uracil-5-)-meth 98.5 7E-07 1.5E-11 92.4 10.0 99 80-188 208-321 (362)
186 KOG1663|consensus 98.4 1.2E-06 2.7E-11 82.3 10.3 112 75-192 70-188 (237)
187 COG0116 Predicted N6-adenine-s 98.4 1.7E-06 3.7E-11 88.0 11.5 125 63-189 176-346 (381)
188 COG2520 Predicted methyltransf 98.4 8.5E-07 1.8E-11 89.5 8.2 102 76-186 186-288 (341)
189 TIGR00755 ksgA dimethyladenosi 98.4 1.2E-06 2.6E-11 86.2 9.2 79 70-156 21-103 (253)
190 PRK11933 yebU rRNA (cytosine-C 98.4 2.1E-06 4.5E-11 91.2 11.3 111 75-189 110-244 (470)
191 KOG3420|consensus 98.4 4.4E-07 9.6E-12 78.7 5.0 80 73-156 43-123 (185)
192 PRK11783 rlmL 23S rRNA m(2)G24 98.4 1.7E-06 3.7E-11 97.0 11.2 122 63-184 174-344 (702)
193 COG2265 TrmA SAM-dependent met 98.4 1.4E-06 3.1E-11 91.5 9.8 118 64-189 279-398 (432)
194 PF05891 Methyltransf_PK: AdoM 98.4 8.8E-07 1.9E-11 83.2 7.2 105 78-186 55-160 (218)
195 PRK04148 hypothetical protein; 98.4 2.5E-06 5.3E-11 74.6 9.5 76 69-154 7-84 (134)
196 COG0220 Predicted S-adenosylme 98.4 2.2E-06 4.8E-11 82.3 9.9 108 80-189 50-166 (227)
197 COG3897 Predicted methyltransf 98.3 1.5E-06 3.2E-11 79.6 7.5 105 66-181 67-172 (218)
198 PF12147 Methyltransf_20: Puta 98.3 5.5E-06 1.2E-10 80.7 11.7 123 67-189 124-251 (311)
199 COG0030 KsgA Dimethyladenosine 98.3 2.5E-06 5.4E-11 82.9 9.4 84 69-157 21-105 (259)
200 KOG2940|consensus 98.3 6.5E-07 1.4E-11 83.5 4.7 100 79-186 73-173 (325)
201 PF09445 Methyltransf_15: RNA 98.3 1.3E-06 2.8E-11 79.2 6.3 76 80-156 1-78 (163)
202 PF01739 CheR: CheR methyltran 98.3 3.1E-06 6.8E-11 79.6 9.0 109 78-189 31-177 (196)
203 PF05219 DREV: DREV methyltran 98.3 1.9E-06 4.1E-11 82.9 7.4 96 78-189 94-190 (265)
204 KOG1661|consensus 98.3 1.6E-06 3.5E-11 80.1 6.6 99 75-184 79-190 (237)
205 PRK10611 chemotaxis methyltran 98.3 1.5E-06 3.3E-11 86.3 6.6 109 79-189 116-264 (287)
206 TIGR00308 TRM1 tRNA(guanine-26 98.2 2.7E-06 5.9E-11 87.8 8.2 102 79-189 45-149 (374)
207 PF01564 Spermine_synth: Sperm 98.2 3.2E-06 7E-11 82.6 7.8 111 78-189 76-193 (246)
208 PF06080 DUF938: Protein of un 98.2 5.2E-06 1.1E-10 77.7 8.0 103 81-184 28-138 (204)
209 PF05958 tRNA_U5-meth_tr: tRNA 98.2 5.4E-06 1.2E-10 85.4 8.8 87 71-160 190-291 (352)
210 KOG2915|consensus 98.2 1.2E-05 2.6E-10 77.2 10.3 108 69-184 96-207 (314)
211 COG0357 GidB Predicted S-adeno 98.1 1.4E-05 3E-10 75.8 10.1 95 79-184 68-165 (215)
212 PF08123 DOT1: Histone methyla 98.1 1E-05 2.2E-10 76.7 8.4 111 70-184 34-155 (205)
213 COG0421 SpeE Spermidine syntha 98.1 2.2E-05 4.7E-10 77.9 10.8 111 80-191 78-194 (282)
214 COG1352 CheR Methylase of chem 98.1 1.4E-05 2.9E-10 78.6 8.6 109 78-189 96-243 (268)
215 COG1189 Predicted rRNA methyla 98.0 1.5E-05 3.2E-10 75.7 8.1 108 65-185 66-176 (245)
216 COG3963 Phospholipid N-methylt 98.0 3.4E-05 7.4E-10 68.9 9.3 106 73-185 43-154 (194)
217 PF01728 FtsJ: FtsJ-like methy 98.0 1E-05 2.2E-10 75.3 6.2 98 78-186 23-138 (181)
218 PRK01544 bifunctional N5-gluta 98.0 3.2E-05 7E-10 83.5 9.8 109 78-189 347-464 (506)
219 PRK11760 putative 23S rRNA C24 97.9 2.4E-05 5.2E-10 78.5 8.0 88 76-180 209-296 (357)
220 PF04816 DUF633: Family of unk 97.9 4.1E-05 8.9E-10 72.5 9.2 96 82-184 1-98 (205)
221 PRK00050 16S rRNA m(4)C1402 me 97.9 2.4E-05 5.3E-10 78.0 7.6 81 72-155 13-98 (296)
222 KOG2187|consensus 97.9 1.1E-05 2.4E-10 84.0 5.0 75 63-139 368-443 (534)
223 PF05148 Methyltransf_8: Hypot 97.9 2.3E-05 5E-10 73.1 6.5 91 75-188 69-159 (219)
224 PF13578 Methyltransf_24: Meth 97.9 6.5E-06 1.4E-10 69.5 2.5 99 83-187 1-105 (106)
225 PRK00536 speE spermidine synth 97.9 0.0001 2.2E-09 72.3 10.7 101 77-191 71-175 (262)
226 PF03141 Methyltransf_29: Puta 97.9 1.5E-05 3.3E-10 83.1 4.9 101 80-191 119-223 (506)
227 KOG1501|consensus 97.8 2.1E-05 4.5E-10 79.9 5.2 212 101-363 389-623 (636)
228 KOG2730|consensus 97.8 1.2E-05 2.6E-10 74.8 2.9 101 78-182 94-197 (263)
229 PF07942 N2227: N2227-like pro 97.8 0.00043 9.2E-09 68.0 13.2 103 78-184 56-199 (270)
230 PF13679 Methyltransf_32: Meth 97.7 0.00011 2.3E-09 65.6 7.9 75 76-153 23-105 (141)
231 COG0293 FtsJ 23S rRNA methylas 97.7 4.9E-05 1.1E-09 71.2 5.5 99 75-186 42-158 (205)
232 TIGR01444 fkbM_fam methyltrans 97.7 0.0001 2.3E-09 65.5 7.5 57 81-138 1-59 (143)
233 PF00398 RrnaAD: Ribosomal RNA 97.7 8.9E-05 1.9E-09 73.4 7.6 83 70-156 22-106 (262)
234 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00012 2.6E-09 74.3 8.5 110 75-184 43-180 (311)
235 KOG3045|consensus 97.7 8.8E-05 1.9E-09 70.8 6.8 87 76-187 178-264 (325)
236 COG0144 Sun tRNA and rRNA cyto 97.7 0.00041 9E-09 71.5 12.2 115 74-189 152-290 (355)
237 COG0500 SmtA SAM-dependent met 97.6 0.0006 1.3E-08 59.8 10.6 101 82-189 52-157 (257)
238 PF01269 Fibrillarin: Fibrilla 97.6 0.00068 1.5E-08 64.1 11.1 105 74-186 69-177 (229)
239 KOG1269|consensus 97.6 0.00014 3E-09 74.7 6.8 109 74-187 106-215 (364)
240 PF05971 Methyltransf_10: Prot 97.6 0.00026 5.6E-09 70.4 8.4 81 79-159 103-189 (299)
241 PF09243 Rsm22: Mitochondrial 97.5 0.00079 1.7E-08 67.0 11.5 110 75-189 30-142 (274)
242 PRK10742 putative methyltransf 97.5 0.00037 8.1E-09 67.2 8.8 88 70-159 78-176 (250)
243 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.00025 5.5E-09 69.2 7.5 114 74-187 52-199 (256)
244 KOG1709|consensus 97.5 0.00061 1.3E-08 63.5 9.2 103 77-188 100-207 (271)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.00044 9.5E-09 69.1 8.2 113 75-190 82-222 (283)
246 TIGR02987 met_A_Alw26 type II 97.4 0.0005 1.1E-08 75.0 9.0 78 78-156 31-121 (524)
247 TIGR03439 methyl_EasF probable 97.3 0.0024 5.2E-08 64.6 12.3 110 75-186 73-196 (319)
248 PHA01634 hypothetical protein 97.3 0.00079 1.7E-08 57.5 7.2 74 76-155 26-100 (156)
249 KOG3178|consensus 97.3 0.0011 2.4E-08 66.6 9.6 94 79-184 178-272 (342)
250 KOG1331|consensus 97.3 0.00013 2.7E-09 71.1 2.2 98 76-185 43-141 (293)
251 COG2384 Predicted SAM-dependen 97.2 0.002 4.2E-08 60.7 9.0 106 77-189 15-124 (226)
252 PF03059 NAS: Nicotianamine sy 97.2 0.0026 5.7E-08 62.7 10.2 107 79-189 121-232 (276)
253 KOG3201|consensus 97.1 0.00024 5.2E-09 63.2 2.0 114 68-184 19-137 (201)
254 COG4262 Predicted spermidine s 97.1 0.003 6.6E-08 63.3 9.4 114 77-191 288-411 (508)
255 COG1889 NOP1 Fibrillarin-like 97.1 0.0046 9.9E-08 57.3 9.8 105 74-186 72-179 (231)
256 PF06962 rRNA_methylase: Putat 97.0 0.0027 5.9E-08 56.0 7.8 84 103-187 1-92 (140)
257 KOG4589|consensus 96.9 0.0018 4E-08 59.1 5.5 100 75-187 66-184 (232)
258 KOG4058|consensus 96.8 0.004 8.6E-08 54.7 6.7 103 74-186 68-171 (199)
259 PF11968 DUF3321: Putative met 96.7 0.0038 8.3E-08 58.8 6.8 86 80-182 53-139 (219)
260 KOG2352|consensus 96.7 0.011 2.4E-07 62.0 10.4 101 80-184 50-158 (482)
261 KOG0822|consensus 96.6 0.0022 4.7E-08 67.2 4.6 78 419-504 544-624 (649)
262 PF04989 CmcI: Cephalosporin h 96.6 0.0079 1.7E-07 56.6 8.0 123 56-189 14-149 (206)
263 KOG1227|consensus 96.5 0.00093 2E-08 65.3 1.3 95 78-182 194-290 (351)
264 PF02005 TRM: N2,N2-dimethylgu 96.5 0.0069 1.5E-07 62.9 7.8 104 78-189 49-156 (377)
265 KOG3987|consensus 96.5 0.00084 1.8E-08 62.1 0.8 95 78-189 112-209 (288)
266 TIGR00006 S-adenosyl-methyltra 96.5 0.013 2.8E-07 58.8 9.1 82 72-155 14-100 (305)
267 PF04445 SAM_MT: Putative SAM- 96.5 0.0062 1.3E-07 58.5 6.4 88 70-159 65-163 (234)
268 KOG2798|consensus 96.4 0.03 6.5E-07 55.4 10.9 119 62-184 127-293 (369)
269 COG4798 Predicted methyltransf 96.4 0.0057 1.2E-07 56.3 5.1 116 70-189 40-168 (238)
270 PF01861 DUF43: Protein of unk 96.3 0.059 1.3E-06 51.8 12.0 108 69-184 35-146 (243)
271 KOG1122|consensus 96.3 0.025 5.4E-07 58.1 9.8 117 74-191 237-375 (460)
272 KOG2920|consensus 96.1 0.006 1.3E-07 59.7 4.1 112 74-189 112-236 (282)
273 KOG3115|consensus 96.1 0.014 3E-07 54.1 6.2 61 78-138 60-128 (249)
274 PF04672 Methyltransf_19: S-ad 96.0 0.043 9.3E-07 53.8 9.6 108 80-189 70-192 (267)
275 KOG2793|consensus 95.5 0.056 1.2E-06 52.5 8.2 102 78-182 86-194 (248)
276 COG5459 Predicted rRNA methyla 95.5 0.032 7E-07 55.9 6.6 113 75-189 110-228 (484)
277 KOG1596|consensus 95.5 0.041 8.9E-07 52.4 6.8 104 72-187 150-261 (317)
278 PF07091 FmrO: Ribosomal RNA m 95.4 0.064 1.4E-06 51.9 8.1 74 75-153 102-177 (251)
279 COG1064 AdhP Zn-dependent alco 95.3 0.044 9.6E-07 55.7 7.1 89 74-184 162-256 (339)
280 PF03141 Methyltransf_29: Puta 95.2 0.03 6.6E-07 59.0 5.7 99 80-189 367-469 (506)
281 cd00315 Cyt_C5_DNA_methylase C 94.9 0.04 8.7E-07 54.9 5.2 69 81-156 2-71 (275)
282 KOG0024|consensus 94.8 0.073 1.6E-06 53.1 6.7 98 74-185 165-271 (354)
283 KOG2671|consensus 94.5 0.024 5.2E-07 56.7 2.6 81 74-156 204-293 (421)
284 KOG1099|consensus 94.5 0.037 8E-07 52.3 3.6 94 80-184 43-160 (294)
285 KOG1253|consensus 94.3 0.017 3.7E-07 60.4 1.1 105 78-189 109-218 (525)
286 COG0286 HsdM Type I restrictio 94.3 0.27 5.8E-06 53.1 10.2 82 76-157 184-274 (489)
287 PTZ00357 methyltransferase; Pr 94.0 0.32 6.9E-06 53.1 9.7 61 417-477 936-1004(1072)
288 KOG1562|consensus 93.8 0.16 3.5E-06 50.0 6.6 112 76-189 119-238 (337)
289 PF07757 AdoMet_MTase: Predict 93.5 0.12 2.5E-06 43.3 4.3 32 78-110 58-89 (112)
290 PRK09880 L-idonate 5-dehydroge 93.2 0.26 5.7E-06 50.4 7.7 96 75-185 166-264 (343)
291 COG1867 TRM1 N2,N2-dimethylgua 93.0 0.22 4.8E-06 50.7 6.3 102 79-189 53-156 (380)
292 cd08283 FDH_like_1 Glutathione 92.8 0.11 2.4E-06 54.2 4.2 106 74-184 180-303 (386)
293 KOG2198|consensus 92.6 0.48 1E-05 48.3 8.1 115 74-189 151-298 (375)
294 COG0275 Predicted S-adenosylme 92.6 0.72 1.6E-05 45.9 9.1 82 72-155 17-104 (314)
295 PF03492 Methyltransf_7: SAM d 92.5 0.51 1.1E-05 48.4 8.4 111 75-187 13-183 (334)
296 COG1063 Tdh Threonine dehydrog 92.4 0.48 1E-05 48.9 8.3 96 75-184 165-266 (350)
297 PRK11524 putative methyltransf 92.4 0.26 5.5E-06 49.3 6.0 46 76-122 206-252 (284)
298 PF01795 Methyltransf_5: MraW 91.9 0.25 5.3E-06 49.7 5.0 80 74-155 16-101 (310)
299 PRK09424 pntA NAD(P) transhydr 91.7 0.92 2E-05 49.0 9.5 42 76-118 162-206 (509)
300 TIGR00027 mthyl_TIGR00027 meth 91.6 1.8 3.9E-05 42.7 10.8 128 60-189 64-199 (260)
301 COG3129 Predicted SAM-dependen 91.4 0.35 7.5E-06 46.1 5.2 80 78-158 78-164 (292)
302 PF01555 N6_N4_Mtase: DNA meth 91.3 0.3 6.6E-06 46.4 5.0 42 76-118 189-231 (231)
303 PRK13699 putative methylase; P 91.2 0.46 1E-05 45.8 6.1 46 76-122 161-207 (227)
304 PF06859 Bin3: Bicoid-interact 90.0 0.19 4.2E-06 42.2 2.0 43 147-189 1-46 (110)
305 PF05711 TylF: Macrocin-O-meth 89.8 2 4.2E-05 42.0 9.0 123 61-189 57-214 (248)
306 PF00145 DNA_methylase: C-5 cy 89.5 0.46 9.9E-06 48.1 4.7 64 81-155 2-69 (335)
307 KOG3924|consensus 89.3 0.98 2.1E-05 46.4 6.7 111 70-184 184-305 (419)
308 PRK01747 mnmC bifunctional tRN 89.2 0.91 2E-05 51.1 7.2 107 79-186 58-205 (662)
309 PLN02668 indole-3-acetate carb 88.8 1.8 3.8E-05 45.1 8.3 23 165-187 215-237 (386)
310 KOG2651|consensus 88.4 1.6 3.6E-05 44.6 7.4 44 76-119 151-195 (476)
311 COG2933 Predicted SAM-dependen 88.1 1.3 2.9E-05 43.0 6.3 90 74-180 207-296 (358)
312 PF11599 AviRa: RRNA methyltra 87.3 1.5 3.2E-05 41.5 6.0 59 62-121 36-98 (246)
313 cd08281 liver_ADH_like1 Zinc-d 87.2 1.3 2.8E-05 45.9 6.4 96 72-185 185-288 (371)
314 COG1568 Predicted methyltransf 87.1 1.5 3.3E-05 42.9 6.1 100 74-180 148-250 (354)
315 PF05206 TRM13: Methyltransfer 87.0 2.2 4.8E-05 42.0 7.5 68 74-141 14-87 (259)
316 PF07279 DUF1442: Protein of u 86.3 6 0.00013 37.5 9.5 103 74-184 37-145 (218)
317 TIGR00675 dcm DNA-methyltransf 86.1 0.64 1.4E-05 47.3 3.3 66 82-155 1-67 (315)
318 cd08254 hydroxyacyl_CoA_DH 6-h 86.0 2.1 4.6E-05 43.2 7.1 94 73-185 160-261 (338)
319 PF03269 DUF268: Caenorhabditi 85.7 0.4 8.7E-06 43.1 1.4 101 79-189 2-113 (177)
320 KOG2078|consensus 85.6 0.51 1.1E-05 48.8 2.2 64 75-139 246-311 (495)
321 TIGR00561 pntA NAD(P) transhyd 85.5 1.7 3.8E-05 46.9 6.3 96 77-184 162-281 (511)
322 cd05188 MDR Medium chain reduc 85.4 1.7 3.8E-05 41.9 5.9 94 74-184 130-229 (271)
323 PRK13699 putative methylase; P 85.3 0.63 1.4E-05 44.9 2.7 55 129-185 2-70 (227)
324 TIGR03451 mycoS_dep_FDH mycoth 85.2 2.8 6.1E-05 43.1 7.6 96 73-185 171-274 (358)
325 PRK11524 putative methyltransf 85.1 0.6 1.3E-05 46.7 2.5 56 129-186 9-79 (284)
326 cd08232 idonate-5-DH L-idonate 84.9 3.3 7.1E-05 42.0 7.9 91 78-184 165-259 (339)
327 PF10354 DUF2431: Domain of un 84.7 3.1 6.7E-05 38.1 6.8 106 84-189 2-127 (166)
328 KOG2912|consensus 83.8 2.3 4.9E-05 42.5 5.7 75 82-156 106-187 (419)
329 TIGR01202 bchC 2-desacetyl-2-h 82.8 3.3 7.1E-05 41.7 6.8 83 77-184 143-228 (308)
330 cd08230 glucose_DH Glucose deh 82.6 3.1 6.8E-05 42.7 6.7 91 76-184 170-266 (355)
331 KOG1201|consensus 82.3 3.6 7.8E-05 40.9 6.5 76 76-155 35-122 (300)
332 PRK07688 thiamine/molybdopteri 82.1 1.6 3.5E-05 44.8 4.3 77 78-154 23-123 (339)
333 cd08237 ribitol-5-phosphate_DH 82.1 4.9 0.00011 41.1 7.9 90 75-184 160-253 (341)
334 PF02636 Methyltransf_28: Puta 81.3 5.3 0.00011 39.1 7.4 71 79-156 19-104 (252)
335 PLN02827 Alcohol dehydrogenase 81.3 3.4 7.3E-05 43.0 6.4 45 74-118 189-236 (378)
336 COG0270 Dcm Site-specific DNA 81.0 2.1 4.6E-05 43.7 4.6 71 79-155 3-75 (328)
337 PRK12475 thiamine/molybdopteri 80.5 2.3 5.1E-05 43.6 4.8 77 78-154 23-123 (338)
338 cd08239 THR_DH_like L-threonin 80.4 2.2 4.8E-05 43.3 4.6 97 74-184 159-259 (339)
339 COG0686 Ald Alanine dehydrogen 80.4 3.8 8.2E-05 41.1 5.8 94 80-184 169-265 (371)
340 PLN02740 Alcohol dehydrogenase 80.2 4.7 0.0001 41.9 7.0 46 73-118 193-241 (381)
341 TIGR02356 adenyl_thiF thiazole 80.1 3 6.6E-05 39.4 5.1 33 78-110 20-54 (202)
342 TIGR03366 HpnZ_proposed putati 79.8 3.2 6.8E-05 41.1 5.4 93 75-184 117-215 (280)
343 PF04072 LCM: Leucine carboxyl 79.6 2.5 5.5E-05 39.2 4.3 111 61-172 60-181 (183)
344 PRK10309 galactitol-1-phosphat 79.4 5.5 0.00012 40.6 7.2 99 74-185 156-258 (347)
345 COG4627 Uncharacterized protei 79.3 0.25 5.5E-06 44.0 -2.3 43 146-189 46-88 (185)
346 PF02737 3HCDH_N: 3-hydroxyacy 79.1 8.2 0.00018 35.7 7.5 103 81-195 1-122 (180)
347 COG3510 CmcI Cephalosporin hyd 78.7 7.9 0.00017 36.1 6.9 120 56-189 51-182 (237)
348 COG4301 Uncharacterized conser 78.6 27 0.00058 34.0 10.7 107 75-186 75-192 (321)
349 KOG2352|consensus 78.4 2 4.3E-05 45.5 3.5 112 77-189 294-418 (482)
350 KOG0022|consensus 78.1 4.6 0.0001 40.5 5.7 48 72-119 186-236 (375)
351 PRK08644 thiamine biosynthesis 77.9 5.1 0.00011 38.2 5.9 77 78-154 27-124 (212)
352 PRK15001 SAM-dependent 23S rib 77.9 14 0.00031 38.4 9.6 91 81-184 47-139 (378)
353 PRK05854 short chain dehydroge 77.0 8.7 0.00019 38.8 7.7 78 77-155 12-101 (313)
354 PRK05786 fabG 3-ketoacyl-(acyl 76.5 22 0.00047 33.7 10.0 74 78-155 4-89 (238)
355 cd01483 E1_enzyme_family Super 76.2 6.1 0.00013 34.8 5.6 75 81-155 1-97 (143)
356 TIGR02354 thiF_fam2 thiamine b 75.9 14 0.00031 34.8 8.3 33 78-110 20-54 (200)
357 cd00401 AdoHcyase S-adenosyl-L 75.3 11 0.00025 39.6 8.1 85 76-184 199-286 (413)
358 PF03712 Cu2_monoox_C: Copper 74.5 9.4 0.0002 34.5 6.4 31 333-364 76-106 (156)
359 PRK05476 S-adenosyl-L-homocyst 74.5 25 0.00055 37.2 10.5 123 77-223 210-338 (425)
360 cd08293 PTGR2 Prostaglandin re 73.8 8.9 0.00019 38.9 6.9 93 74-184 148-251 (345)
361 cd08278 benzyl_alcohol_DH Benz 73.8 3.5 7.7E-05 42.5 3.9 93 74-184 182-282 (365)
362 cd00757 ThiF_MoeB_HesA_family 73.8 6.1 0.00013 38.0 5.3 77 78-154 20-118 (228)
363 PRK08223 hypothetical protein; 73.3 7.7 0.00017 38.8 5.9 76 78-153 26-123 (287)
364 PRK07066 3-hydroxybutyryl-CoA 73.2 13 0.00028 37.9 7.7 100 80-190 8-122 (321)
365 COG1062 AdhC Zn-dependent alco 73.1 8.4 0.00018 39.2 6.1 50 70-119 177-229 (366)
366 cd05278 FDH_like Formaldehyde 72.8 4.5 9.7E-05 41.1 4.4 94 74-184 163-264 (347)
367 cd05285 sorbitol_DH Sorbitol d 72.7 8.6 0.00019 39.1 6.4 95 72-184 156-262 (343)
368 cd08285 NADP_ADH NADP(H)-depen 72.5 4.4 9.5E-05 41.4 4.2 95 73-184 161-263 (351)
369 PF06460 NSP13: Coronavirus NS 72.4 15 0.00032 35.9 7.3 98 74-186 57-168 (299)
370 COG1255 Uncharacterized protei 72.2 15 0.00032 31.2 6.4 91 80-189 15-106 (129)
371 cd08300 alcohol_DH_class_III c 71.8 11 0.00024 38.8 7.1 46 73-118 181-229 (368)
372 PRK10458 DNA cytosine methylas 71.4 8.3 0.00018 41.4 6.1 59 79-140 88-147 (467)
373 PRK05690 molybdopterin biosynt 70.9 8.4 0.00018 37.6 5.6 77 78-154 31-129 (245)
374 PF00107 ADH_zinc_N: Zinc-bind 70.8 5.7 0.00012 34.0 4.0 83 88-188 1-90 (130)
375 cd01487 E1_ThiF_like E1_ThiF_l 70.8 9.4 0.0002 35.1 5.6 74 81-154 1-95 (174)
376 KOG2539|consensus 70.6 6 0.00013 41.7 4.6 108 76-184 198-312 (491)
377 cd08255 2-desacetyl-2-hydroxye 70.6 14 0.00031 36.0 7.3 92 74-184 93-187 (277)
378 PRK07063 short chain dehydroge 70.2 18 0.0004 34.9 7.9 78 77-155 5-94 (260)
379 PLN03154 putative allyl alcoho 70.0 16 0.00036 37.4 7.8 96 73-184 153-255 (348)
380 PRK05808 3-hydroxybutyryl-CoA 69.4 32 0.00069 34.1 9.5 101 81-193 5-124 (282)
381 COG0604 Qor NADPH:quinone redu 69.2 17 0.00036 37.1 7.6 98 72-185 136-239 (326)
382 PF05050 Methyltransf_21: Meth 69.2 11 0.00023 33.6 5.6 53 84-136 1-61 (167)
383 cd08234 threonine_DH_like L-th 69.1 15 0.00033 36.8 7.4 95 72-184 153-254 (334)
384 cd01492 Aos1_SUMO Ubiquitin ac 68.9 13 0.00029 34.8 6.3 77 78-155 20-118 (197)
385 PF10237 N6-adenineMlase: Prob 68.7 45 0.00097 30.4 9.4 100 77-189 24-125 (162)
386 PF02254 TrkA_N: TrkA-N domain 68.7 13 0.00029 31.0 5.8 85 87-185 4-94 (116)
387 PRK06035 3-hydroxyacyl-CoA deh 68.5 27 0.00057 34.9 8.8 98 80-189 4-123 (291)
388 PRK05597 molybdopterin biosynt 68.3 10 0.00022 39.3 5.8 77 78-154 27-125 (355)
389 TIGR02822 adh_fam_2 zinc-bindi 68.0 25 0.00054 35.7 8.6 89 74-185 161-252 (329)
390 TIGR02825 B4_12hDH leukotriene 67.9 22 0.00047 35.8 8.1 96 72-184 132-234 (325)
391 PF03721 UDPG_MGDP_dh_N: UDP-g 67.6 15 0.00033 34.1 6.3 102 81-189 2-122 (185)
392 KOG0821|consensus 67.3 16 0.00035 34.8 6.2 70 69-140 41-111 (326)
393 COG1565 Uncharacterized conser 66.7 15 0.00033 37.6 6.5 49 74-122 73-131 (370)
394 cd08295 double_bond_reductase_ 66.3 23 0.0005 35.8 8.0 96 73-184 146-248 (338)
395 PRK07819 3-hydroxybutyryl-CoA 66.2 20 0.00044 35.8 7.3 101 80-192 6-126 (286)
396 COG3315 O-Methyltransferase in 66.1 25 0.00054 35.4 7.9 126 60-187 75-209 (297)
397 PRK09260 3-hydroxybutyryl-CoA 65.5 22 0.00047 35.4 7.4 99 80-189 2-119 (288)
398 PLN03209 translocon at the inn 65.4 16 0.00036 40.1 6.9 82 73-155 74-167 (576)
399 PRK06197 short chain dehydroge 65.2 23 0.00049 35.4 7.6 78 77-155 14-103 (306)
400 cd08236 sugar_DH NAD(P)-depend 65.0 8.9 0.00019 38.9 4.6 94 74-184 155-255 (343)
401 cd08294 leukotriene_B4_DH_like 64.7 22 0.00049 35.5 7.5 93 72-184 137-238 (329)
402 PRK06914 short chain dehydroge 64.6 26 0.00057 34.3 7.8 76 79-155 3-89 (280)
403 PRK05867 short chain dehydroge 64.4 25 0.00055 33.8 7.6 76 77-155 7-94 (253)
404 PF05430 Methyltransf_30: S-ad 64.3 5.5 0.00012 34.5 2.4 56 129-187 33-90 (124)
405 cd01488 Uba3_RUB Ubiquitin act 64.2 19 0.00042 36.0 6.7 73 81-154 1-95 (291)
406 PRK08328 hypothetical protein; 63.9 15 0.00032 35.5 5.6 32 78-109 26-59 (231)
407 cd01065 NAD_bind_Shikimate_DH 63.5 40 0.00087 29.7 8.1 71 77-156 17-90 (155)
408 PF00106 adh_short: short chai 63.5 23 0.0005 31.4 6.6 74 80-155 1-88 (167)
409 PRK12548 shikimate 5-dehydroge 63.4 40 0.00086 33.7 8.9 79 77-156 124-208 (289)
410 TIGR02355 moeB molybdopterin s 63.1 13 0.00028 36.1 5.1 77 78-154 23-121 (240)
411 PRK08762 molybdopterin biosynt 62.9 12 0.00026 39.0 5.2 33 78-110 134-168 (376)
412 PRK08324 short chain dehydroge 62.2 33 0.00071 38.8 8.9 75 77-155 420-506 (681)
413 PRK08339 short chain dehydroge 62.0 33 0.00071 33.4 7.9 77 77-155 6-93 (263)
414 cd08231 MDR_TM0436_like Hypoth 61.4 32 0.00069 35.1 8.0 96 75-184 174-277 (361)
415 PRK07677 short chain dehydroge 61.4 32 0.00069 33.1 7.6 74 79-155 1-86 (252)
416 PRK07062 short chain dehydroge 61.3 33 0.00072 33.2 7.8 78 77-155 6-95 (265)
417 PRK11154 fadJ multifunctional 61.2 32 0.0007 39.1 8.6 104 80-195 310-433 (708)
418 COG0863 DNA modification methy 61.2 28 0.00061 34.5 7.4 48 75-123 219-267 (302)
419 TIGR00518 alaDH alanine dehydr 61.1 10 0.00022 39.4 4.3 37 78-115 166-205 (370)
420 PRK08293 3-hydroxybutyryl-CoA 61.0 35 0.00077 33.9 8.0 99 80-189 4-122 (287)
421 PRK07806 short chain dehydroge 60.8 73 0.0016 30.3 10.1 76 77-155 4-92 (248)
422 TIGR00936 ahcY adenosylhomocys 60.7 61 0.0013 34.2 9.8 123 76-222 192-320 (406)
423 PRK11730 fadB multifunctional 60.7 32 0.0007 39.2 8.4 104 80-195 314-436 (715)
424 cd08261 Zn_ADH7 Alcohol dehydr 60.3 9.3 0.0002 38.7 3.8 93 73-184 154-255 (337)
425 PRK09242 tropinone reductase; 59.5 38 0.00082 32.6 7.8 77 78-155 8-96 (257)
426 cd00755 YgdL_like Family of ac 59.2 29 0.00062 33.6 6.7 33 78-110 10-44 (231)
427 cd08279 Zn_ADH_class_III Class 59.0 13 0.00028 38.2 4.7 95 73-184 177-279 (363)
428 PRK05708 2-dehydropantoate 2-r 58.6 56 0.0012 32.9 9.0 96 80-189 3-106 (305)
429 PRK06128 oxidoreductase; Provi 58.5 53 0.0012 32.6 8.9 76 77-155 53-142 (300)
430 cd01489 Uba2_SUMO Ubiquitin ac 58.0 27 0.00059 35.4 6.6 74 81-154 1-97 (312)
431 PRK07530 3-hydroxybutyryl-CoA 57.8 67 0.0014 31.9 9.4 99 80-190 5-122 (292)
432 PRK06130 3-hydroxybutyryl-CoA 57.6 47 0.001 33.4 8.3 99 80-189 5-117 (311)
433 COG0373 HemA Glutamyl-tRNA red 57.4 24 0.00053 37.1 6.2 97 77-189 176-275 (414)
434 TIGR02818 adh_III_F_hyde S-(hy 57.4 26 0.00056 36.2 6.5 47 72-118 179-228 (368)
435 cd05279 Zn_ADH1 Liver alcohol 57.3 30 0.00065 35.6 7.0 98 73-185 178-283 (365)
436 PRK07904 short chain dehydroge 57.3 43 0.00092 32.4 7.7 79 76-155 5-95 (253)
437 cd08245 CAD Cinnamyl alcohol d 57.1 43 0.00094 33.5 8.0 92 74-184 158-253 (330)
438 PRK07877 hypothetical protein; 57.1 29 0.00062 39.4 7.1 77 78-154 106-203 (722)
439 cd08233 butanediol_DH_like (2R 56.5 14 0.00031 37.6 4.4 98 73-184 167-269 (351)
440 cd05281 TDH Threonine dehydrog 55.7 19 0.00041 36.5 5.1 95 76-184 161-259 (341)
441 cd08240 6_hydroxyhexanoate_dh_ 55.6 29 0.00063 35.2 6.5 91 76-184 173-271 (350)
442 PRK06172 short chain dehydroge 55.2 51 0.0011 31.6 7.9 76 77-155 5-92 (253)
443 PRK07417 arogenate dehydrogena 55.1 42 0.0009 33.3 7.3 89 81-190 2-93 (279)
444 KOG1205|consensus 54.9 33 0.00071 34.2 6.4 77 78-155 11-99 (282)
445 PRK10083 putative oxidoreducta 54.8 40 0.00087 34.0 7.4 46 73-118 155-204 (339)
446 PF11899 DUF3419: Protein of u 54.7 34 0.00074 35.7 6.8 42 74-116 31-73 (380)
447 PRK05876 short chain dehydroge 54.3 49 0.0011 32.5 7.7 76 77-155 4-91 (275)
448 PRK07035 short chain dehydroge 53.9 53 0.0012 31.4 7.8 76 77-155 6-93 (252)
449 PRK06124 gluconate 5-dehydroge 53.7 56 0.0012 31.3 7.9 76 77-155 9-96 (256)
450 cd01484 E1-2_like Ubiquitin ac 53.6 70 0.0015 31.0 8.3 74 81-154 1-98 (234)
451 cd01485 E1-1_like Ubiquitin ac 53.1 31 0.00068 32.3 5.8 33 78-110 18-52 (198)
452 PRK09186 flagellin modificatio 52.7 53 0.0012 31.4 7.6 77 78-155 3-91 (256)
453 TIGR02437 FadB fatty oxidation 52.6 49 0.0011 37.7 8.1 105 80-196 314-437 (714)
454 PRK06125 short chain dehydroge 52.4 56 0.0012 31.4 7.7 76 78-155 6-89 (259)
455 PRK14851 hypothetical protein; 52.4 25 0.00054 39.7 5.7 76 78-153 42-139 (679)
456 PLN02586 probable cinnamyl alc 52.3 35 0.00075 35.1 6.5 91 75-184 180-275 (360)
457 PLN02989 cinnamyl-alcohol dehy 52.3 28 0.00062 34.9 5.8 76 78-155 4-85 (325)
458 PRK08862 short chain dehydroge 52.0 55 0.0012 31.2 7.4 75 78-155 4-91 (227)
459 TIGR02441 fa_ox_alpha_mit fatt 51.9 38 0.00081 38.8 7.1 106 80-197 336-460 (737)
460 PRK07831 short chain dehydroge 51.4 67 0.0014 31.0 8.1 78 76-155 14-105 (262)
461 cd08263 Zn_ADH10 Alcohol dehyd 51.4 22 0.00048 36.5 4.9 94 74-184 183-284 (367)
462 PLN02545 3-hydroxybutyryl-CoA 51.4 1.1E+02 0.0024 30.5 9.7 99 80-190 5-122 (295)
463 PRK06935 2-deoxy-D-gluconate 3 51.3 57 0.0012 31.4 7.5 76 77-155 13-99 (258)
464 PRK09072 short chain dehydroge 51.1 57 0.0012 31.5 7.5 74 78-155 4-88 (263)
465 PRK07478 short chain dehydroge 51.0 63 0.0014 31.0 7.8 75 78-155 5-91 (254)
466 PRK05866 short chain dehydroge 50.2 62 0.0013 32.2 7.8 75 78-155 39-125 (293)
467 cd08286 FDH_like_ADH2 formalde 49.9 25 0.00054 35.6 4.9 97 74-184 162-263 (345)
468 PRK07411 hypothetical protein; 49.8 29 0.00063 36.4 5.4 77 78-154 37-135 (390)
469 PRK06196 oxidoreductase; Provi 49.7 43 0.00094 33.6 6.6 72 77-155 24-107 (315)
470 PF00670 AdoHcyase_NAD: S-aden 49.4 1.1E+02 0.0023 27.9 8.2 125 74-222 18-148 (162)
471 TIGR00692 tdh L-threonine 3-de 49.3 20 0.00044 36.3 4.1 95 76-184 159-258 (340)
472 PRK08589 short chain dehydroge 49.3 68 0.0015 31.3 7.8 76 77-155 4-90 (272)
473 PRK07890 short chain dehydroge 49.2 74 0.0016 30.4 8.0 76 77-155 3-90 (258)
474 PRK06249 2-dehydropantoate 2-r 49.2 45 0.00098 33.6 6.6 94 80-187 6-106 (313)
475 PRK06194 hypothetical protein; 49.1 64 0.0014 31.6 7.6 75 78-155 5-91 (287)
476 PF03686 UPF0146: Uncharacteri 48.9 21 0.00045 31.0 3.4 64 78-154 13-77 (127)
477 PRK10310 PTS system galactitol 48.7 25 0.00053 28.8 3.8 12 85-96 7-18 (94)
478 PF01488 Shikimate_DH: Shikima 48.6 28 0.0006 30.4 4.4 72 76-156 9-84 (135)
479 PLN02780 ketoreductase/ oxidor 48.5 63 0.0014 32.7 7.6 59 78-137 52-114 (320)
480 PRK08251 short chain dehydroge 48.2 72 0.0016 30.3 7.7 76 79-155 2-89 (248)
481 PRK07231 fabG 3-ketoacyl-(acyl 48.2 68 0.0015 30.4 7.5 74 78-155 4-89 (251)
482 PLN02178 cinnamyl-alcohol dehy 48.1 66 0.0014 33.4 7.8 89 77-184 177-270 (375)
483 KOG2811|consensus 48.1 49 0.0011 34.1 6.3 60 80-141 184-248 (420)
484 PRK05875 short chain dehydroge 48.1 74 0.0016 30.9 7.8 77 78-155 6-94 (276)
485 PRK12823 benD 1,6-dihydroxycyc 48.0 74 0.0016 30.5 7.8 76 77-155 6-92 (260)
486 PF12242 Eno-Rase_NADH_b: NAD( 47.6 80 0.0017 24.9 6.1 37 73-110 33-73 (78)
487 KOG1208|consensus 47.6 76 0.0016 32.2 7.8 79 76-155 32-122 (314)
488 PRK05396 tdh L-threonine 3-deh 47.5 21 0.00046 36.1 3.9 92 77-185 162-261 (341)
489 PRK07878 molybdopterin biosynt 46.8 34 0.00074 35.9 5.4 32 78-109 41-74 (392)
490 PLN02494 adenosylhomocysteinas 46.8 1.1E+02 0.0023 33.0 9.0 132 68-223 242-382 (477)
491 TIGR00853 pts-lac PTS system, 46.6 38 0.00083 27.7 4.6 55 80-155 4-58 (95)
492 PRK06113 7-alpha-hydroxysteroi 46.4 81 0.0018 30.2 7.7 75 78-155 10-96 (255)
493 PRK07502 cyclohexadienyl dehyd 46.2 80 0.0017 31.7 7.9 91 80-189 7-101 (307)
494 TIGR01381 E1_like_apg7 E1-like 46.2 23 0.00049 39.4 4.0 32 78-109 337-370 (664)
495 COG5379 BtaA S-adenosylmethion 45.9 44 0.00096 33.3 5.5 45 75-120 60-105 (414)
496 PRK07097 gluconate 5-dehydroge 45.8 81 0.0018 30.5 7.7 76 77-155 8-95 (265)
497 PRK08217 fabG 3-ketoacyl-(acyl 45.7 84 0.0018 29.8 7.7 75 78-155 4-90 (253)
498 PRK08267 short chain dehydroge 45.5 60 0.0013 31.2 6.7 71 80-155 2-85 (260)
499 PRK12384 sorbitol-6-phosphate 45.4 84 0.0018 30.1 7.7 75 79-155 2-89 (259)
500 PRK08213 gluconate 5-dehydroge 45.2 85 0.0018 30.1 7.7 76 77-155 10-97 (259)
No 1
>KOG1499|consensus
Probab=100.00 E-value=3.5e-72 Score=548.49 Aligned_cols=328 Identities=66% Similarity=1.185 Sum_probs=317.0
Q ss_pred cccCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHH
Q psy14674 34 CEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIV 113 (519)
Q Consensus 34 ~~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~ 113 (519)
++.+.+.++||++|+++++|++||+|.+|+.+|+.+++++..++++++|||||||||++++++|++|+++|+|||.|+++
T Consensus 16 ~~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia 95 (346)
T KOG1499|consen 16 PKDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA 95 (346)
T ss_pred ccccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH
Confidence 56667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccc
Q psy14674 114 EYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC 193 (519)
Q Consensus 114 ~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 193 (519)
+.|++.+..|++.+.|+++++.++++.+|. +++|+|+|||||+++.+|.++++++.++.++|+|||.++|+.++
T Consensus 96 ~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~--eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~---- 169 (346)
T KOG1499|consen 96 DFARKIVKDNGLEDVITVIKGKVEDIELPV--EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRAT---- 169 (346)
T ss_pred HHHHHHHHhcCccceEEEeecceEEEecCc--cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccce----
Confidence 999999999999999999999999999995 89999999999999999999999999999999999999999999
Q ss_pred ccccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCCce
Q psy14674 194 GIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCL 273 (519)
Q Consensus 194 ~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~~~ 273 (519)
++++++++..+...++.||.++|||||+++++.+..+|+++.++|.+++++||.
T Consensus 170 --------------------------l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~ 223 (346)
T KOG1499|consen 170 --------------------------LYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCL 223 (346)
T ss_pred --------------------------EEEEeccCchhhhhhcCccccccccchhhhhhhhhcccceeccChhHhccccee
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCC--CceEEecCCCCCCCCeeeEEEeeCceeeecCCC
Q psy14674 274 LKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCH--KRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGE 351 (519)
Q Consensus 274 ~~~~dl~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~--~~v~lsT~P~~~~thW~q~v~~l~~p~~v~~g~ 351 (519)
++++|+.+++.+++.|+++|++.+.++|.+|||++|||+.|+.++ .++.|||||.+|+|||||+||+|++|+.|++||
T Consensus 224 i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge 303 (346)
T KOG1499|consen 224 IKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGE 303 (346)
T ss_pred eEEeeeeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccceecCc
Confidence 999999999999999999999999999999999999999999887 789999999999999999999999999999999
Q ss_pred EEEEEEEEEeCCCCCcceEEEEEEEecCc-eeeeccceeEEec
Q psy14674 352 EVVGSFGMQPNPRNNRDLDFTVEVNFKGE-LCEMSESNDYQVD 393 (519)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 393 (519)
.|.|++++++|++|+|+|+++|.+.++|+ .+....++.|.|+
T Consensus 304 ~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~~~~~~~y~~~ 346 (346)
T KOG1499|consen 304 DITGTITMKPNKKNNRDLDISLSLNFKGQGLCSFSESDSYPMR 346 (346)
T ss_pred eEEEEEEEeeCCCCCccceEEEEEecCCccccccccccccccC
Confidence 99999999999999999999999999999 6666667777764
No 2
>KOG1500|consensus
Probab=100.00 E-value=5.7e-53 Score=403.93 Aligned_cols=322 Identities=35% Similarity=0.629 Sum_probs=290.0
Q ss_pred ccCCCcchhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHH
Q psy14674 35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE 114 (519)
Q Consensus 35 ~~~~~~~~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~ 114 (519)
.+..+...||..|+.+..+..|+.|.+|+..|.++|+++...+.++.|||+|||+|++++++|++|+++|||||.|+|++
T Consensus 134 tEesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAq 213 (517)
T KOG1500|consen 134 TEESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQ 213 (517)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHH
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccc
Q psy14674 115 YAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICG 194 (519)
Q Consensus 115 ~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~ 194 (519)
+|++.++.|++.+||+++.|.++++++| +++|+|||++||+.+.+|.++++.+.++ ++|||.|.++|....
T Consensus 214 yA~~Lv~~N~~~~rItVI~GKiEdieLP---Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gd----- 284 (517)
T KOG1500|consen 214 YARKLVASNNLADRITVIPGKIEDIELP---EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGD----- 284 (517)
T ss_pred HHHHHHhcCCccceEEEccCccccccCc---hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccc-----
Confidence 9999999999999999999999999999 8999999999999999999999999988 999999999999999
Q ss_pred cccccCCCcccccceeEEecCCCcceeeecccCccccc---cceeeee--cccccChhhhhhhh----hcCCcccccCCC
Q psy14674 195 IEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKE---DKITWWD--NVYGFDMSCIKKIA----IKEPLVDVVDPK 265 (519)
Q Consensus 195 i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~w~--~~~G~d~~~~~~~~----~~~~~v~~~~~~ 265 (519)
++++|+.++.+.. .+..||- ++||.|++++...+ +..|+|+.+|++
T Consensus 285 -------------------------iHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~R 339 (517)
T KOG1500|consen 285 -------------------------IHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIR 339 (517)
T ss_pred -------------------------eeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccc
Confidence 7777777766544 3456784 68999999987655 466999999998
Q ss_pred CcccCCceEEEEecCCCCCCCc-eeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCCCCCeeeEEEeeCce
Q psy14674 266 QVVTSSCLLKEIDLYTITKADL-SFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEH 344 (519)
Q Consensus 266 ~~ls~~~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~~thW~q~v~~l~~p 344 (519)
-++..+. .+.+||...+++++ .+..|++|.+...|.+||+++|||+.|+++.-.+.+||+|.+|.|||.|..++|..|
T Consensus 340 ilmA~sv-~h~~dF~~~kEedlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~P 418 (517)
T KOG1500|consen 340 ILMAKSV-FHVIDFLNMKEEDLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQP 418 (517)
T ss_pred eeeccch-HhhhhhhhcccchheeecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCc
Confidence 8877644 57789999999998 688999999999999999999999999988888899999999999999999999999
Q ss_pred eeecCCCEEEEEEEEEeCCCCCcceEEEEEEEecCceeeeccceeEEeccc
Q psy14674 345 LTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDR 395 (519)
Q Consensus 345 ~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (519)
+.|++|++|+|++.+..++++++++++++++.-.+ .++++.+++++|
T Consensus 419 i~v~aGq~ltGr~~LiA~~~QSY~i~i~l~~~~~l----~sSs~~lDLK~P 465 (517)
T KOG1500|consen 419 IFVKAGQTLTGRLLLIANSRQSYDITITLSAKMTL----QSSSNKLDLKNP 465 (517)
T ss_pred hhhhcCCeeeeeEEEEEccccceeEEEEEEeeeee----ecccceeccCCc
Confidence 99999999999999999999999888888776443 345566666665
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=3.3e-39 Score=337.33 Aligned_cols=263 Identities=29% Similarity=0.459 Sum_probs=207.8
Q ss_pred ccHHhhhcHHHHHHHHHHHHhcCC----C----CCCCEEEEECCcccHHHHHHHHcC-----CCEEEEEechH-HHHHHH
Q psy14674 52 IHEEMLKDEVRTMTYRNSMYHNKH----L----FKGKIVLDIGCGTGILSMFAAKSG-----AARVIGIECSN-IVEYAK 117 (519)
Q Consensus 52 ~~~~~l~d~~r~~~y~~ai~~~~~----~----~~~~~VLDiGcGtG~ls~~la~~g-----~~~V~gvD~s~-~~~~A~ 117 (519)
.++.+-+|..+...|.+||..... . .+++.|||||||+|.|++++++++ +.+|+|||.++ +....+
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~ 231 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ 231 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH
Confidence 456677899999999999865321 1 136799999999999999998885 67999999995 555556
Q ss_pred HHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccccc
Q psy14674 118 EIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIED 197 (519)
Q Consensus 118 ~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~ 197 (519)
++++.|++.++|+++++|++++.+| +++|+||||+||.++.+|- ...++.++.|+|||||++||+.++
T Consensus 232 ~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t-------- 299 (448)
T PF05185_consen 232 KRVNANGWGDKVTVIHGDMREVELP---EKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYT-------- 299 (448)
T ss_dssp HHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEE--------
T ss_pred HHHHhcCCCCeEEEEeCcccCCCCC---CceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchh--------
Confidence 7778999999999999999999998 7999999999999998884 456789999999999999999999
Q ss_pred ccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccCCCCcccCC-ceEEE
Q psy14674 198 LQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSS-CLLKE 276 (519)
Q Consensus 198 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~~~~~ls~~-~~~~~ 276 (519)
.|++|+++..++.+...+|. ...+..|++..+.+...++.+ ..+++
T Consensus 300 ----------------------~ylaPiss~~l~~~~~~~~~-----------~~~~e~pyvv~~~~~~~Ls~~~~~~~~ 346 (448)
T PF05185_consen 300 ----------------------SYLAPISSPKLYQEVRNWWN-----------PSSFETPYVVHLSPFELLSDPPQPVFT 346 (448)
T ss_dssp ----------------------EEEEEEE-HHHHHHHHHHHG-----------HHHHTSSEEE--GGGGBCSCCEEEEEE
T ss_pred ----------------------hEEEEeeCHHHHHHHHhhcc-----------hhhcCCcEEEEccchhhhcCCceEEEE
Confidence 77788887766544332222 344566888778888888888 88899
Q ss_pred EecCCCC---CCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCC----CCCCeeeEEEeeCceeeecC
Q psy14674 277 IDLYTIT---KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA----HYTHWKQTVFYLNEHLTVKK 349 (519)
Q Consensus 277 ~dl~~~~---~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~----~~thW~q~v~~l~~p~~v~~ 349 (519)
|++.+.. ..+..+...++|++.++|.+|||++||++.|+ ++|.|||+|.. +.|||+|++|||++|+.|++
T Consensus 347 F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly---~~V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~ 423 (448)
T PF05185_consen 347 FDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLY---GDVVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKA 423 (448)
T ss_dssp TTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEE---CSEEEESSTTS---TT--TTEEEEEEEEEEEEE-T
T ss_pred eccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEee---CCeeeecCCCcCCCCCCCeEeEEEEEecCcEEECC
Confidence 9888766 35667888999999999999999999999999 55999999987 78999999999999999999
Q ss_pred CCEEEEEEEEEeC
Q psy14674 350 GEEVVGSFGMQPN 362 (519)
Q Consensus 350 g~~i~~~~~~~~~ 362 (519)
||+|++++..+.+
T Consensus 424 g~~I~~~i~R~~~ 436 (448)
T PF05185_consen 424 GDEISVHIWRKTD 436 (448)
T ss_dssp T-EEEEEEEEECC
T ss_pred CCEEEEEEEEEcC
Confidence 9999999888865
No 4
>KOG1499|consensus
Probab=99.96 E-value=4.7e-29 Score=245.03 Aligned_cols=123 Identities=51% Similarity=0.955 Sum_probs=113.6
Q ss_pred hcccccccccceeccc-eeeeeceEEEEeecceeeEEEEEEEEEEcCCC--ceeEEecCCCCCCCCceeEEEeecccccc
Q psy14674 397 AALGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCH--KRIGFSTAPEAHYTHWKQTVFYLNEHLTV 473 (519)
Q Consensus 397 ~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~--~~v~lsT~P~~~~THWkQt~~~l~~~~~v 473 (519)
-++.++.+||.|...+ ++|+++|++++++++.+|||++||||.|++++ ++++|||||.+|+||||||||||++|+.|
T Consensus 220 ~~~~i~~~Dl~t~~i~d~~F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~~~~~fST~P~~p~THWKQtVfyl~~p~~v 299 (346)
T KOG1499|consen 220 EPCLIKEFDLYTVKIEDLSFTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGKKRLGFSTSPSSPYTHWKQTVFYLENPLTV 299 (346)
T ss_pred cceeeEEeeeeeeeccceeeccceEEEEccCceEEEEEEEEEEeeccCCCCCcceeecCCCCCCceeeeEEEEecCccce
Confidence 3568899999997666 67999999999999999999999999999988 89999999999999999999999999999
Q ss_pred cCCCEEEEEEEEEeCCCCCceeEEEEEEEEcCc-eeeeeeeeeEeeC
Q psy14674 474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGE-LCEMSESNDYRMR 519 (519)
Q Consensus 474 ~~g~~i~g~~~~~~~~~~~r~l~i~~~~~~~~~-~~~~~~~~~~~~~ 519 (519)
++||.|.|+|+|++|++|+|+|+++|+|+++++ ..+...++.|+||
T Consensus 300 ~~ge~i~g~it~~~~~~~~R~l~~~l~~~~~~~~~~~~~~~~~y~~~ 346 (346)
T KOG1499|consen 300 KEGEDITGTITMKPNKKNNRDLDISLSLNFKGQGLCSFSESDSYPMR 346 (346)
T ss_pred ecCceEEEEEEEeeCCCCCccceEEEEEecCCccccccccccccccC
Confidence 999999999999999999999999999999998 4545556778886
No 5
>KOG0822|consensus
Probab=99.86 E-value=1.8e-21 Score=197.89 Aligned_cols=261 Identities=19% Similarity=0.280 Sum_probs=196.5
Q ss_pred cHHhhhcHHHHHHHHHHHHhcCCCC-------CCCEEEEECCcccHHHHHHHHc-----CCCEEEEEechH-HHHHHHHH
Q psy14674 53 HEEMLKDEVRTMTYRNSMYHNKHLF-------KGKIVLDIGCGTGILSMFAAKS-----GAARVIGIECSN-IVEYAKEI 119 (519)
Q Consensus 53 ~~~~l~d~~r~~~y~~ai~~~~~~~-------~~~~VLDiGcGtG~ls~~la~~-----g~~~V~gvD~s~-~~~~A~~~ 119 (519)
++..-+|.+....|.+||+...... .-.+|+-+|+|.|-+.....++ -.-++|+||.++ ++-..+.
T Consensus 335 YetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~- 413 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN- 413 (649)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-
Confidence 4455567778888888887543211 1347889999999775543332 133799999994 4433332
Q ss_pred HHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccccccc
Q psy14674 120 VDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQ 199 (519)
Q Consensus 120 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~ 199 (519)
..-..+.++|+++.+|+..+..|. ++.|++|||.+|.+..+|-. +.+|+.+.++|||+|+.||...+
T Consensus 414 ~n~~~W~~~Vtii~~DMR~w~ap~--eq~DI~VSELLGSFGDNELS-PECLDG~q~fLkpdgIsIP~sYt---------- 480 (649)
T KOG0822|consen 414 RNFECWDNRVTIISSDMRKWNAPR--EQADIIVSELLGSFGDNELS-PECLDGAQKFLKPDGISIPSSYT---------- 480 (649)
T ss_pred hchhhhcCeeEEEeccccccCCch--hhccchHHHhhccccCccCC-HHHHHHHHhhcCCCceEccchhh----------
Confidence 445567889999999999998665 89999999999998888754 55688888999999999999999
Q ss_pred CCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhh-hhhhcCCcccccCCCCcccCCceEEEEe
Q psy14674 200 GGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIK-KIAIKEPLVDVVDPKQVVTSSCLLKEID 278 (519)
Q Consensus 200 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~-~~~~~~~~v~~~~~~~~ls~~~~~~~~d 278 (519)
.|++|+....++.+ + ++.+ ..++..++|..+.+...|+++..+++|.
T Consensus 481 --------------------Syi~PImS~~l~q~-------v-----~a~~~~~~fe~~YVV~l~~~~~La~~q~vftF~ 528 (649)
T KOG0822|consen 481 --------------------SYIAPIMSPKLYQE-------V-----KATNDPNAFEAPYVVLLHNYCILAEPQPVFTFE 528 (649)
T ss_pred --------------------hhhcccccHHHHHH-------H-----HhcCCccccccceEEEecceeecCCCCceeEEe
Confidence 77777776655432 1 1111 1345557888888888888889888887
Q ss_pred cCCCC-CCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCC---CCCeeeEEEeeCceeeecCCCEEE
Q psy14674 279 LYTIT-KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---YTHWKQTVFYLNEHLTVKKGEEVV 354 (519)
Q Consensus 279 l~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~---~thW~q~v~~l~~p~~v~~g~~i~ 354 (519)
..... .-+-......+|++.++|.+|||++|||..|+ ++|.||+.|... ..+|.+.+|++++|+.|.+|++|+
T Consensus 529 HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~LY---kdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~ls 605 (649)
T KOG0822|consen 529 HPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAVLY---KDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLS 605 (649)
T ss_pred cCCcccccccccceeEEEecCCCceEeecchhhhhhhh---heeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEE
Confidence 65442 12223456788999999999999999999999 789999999632 467999999999999999999999
Q ss_pred EEEEEEeC
Q psy14674 355 GSFGMQPN 362 (519)
Q Consensus 355 ~~~~~~~~ 362 (519)
+.|...-+
T Consensus 606 v~~wR~~d 613 (649)
T KOG0822|consen 606 VHFWRCVD 613 (649)
T ss_pred EEEEEEeC
Confidence 99976643
No 6
>KOG1501|consensus
Probab=99.82 E-value=7.5e-20 Score=181.90 Aligned_cols=270 Identities=21% Similarity=0.246 Sum_probs=188.5
Q ss_pred ccHHhhhcHHHHHHHHHHHHhcCCCC-----CC-CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC
Q psy14674 52 IHEEMLKDEVRTMTYRNSMYHNKHLF-----KG-KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN 124 (519)
Q Consensus 52 ~~~~~l~d~~r~~~y~~ai~~~~~~~-----~~-~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~ 124 (519)
-+.+|++|..|+.+|+..|.....-. .| .-|||||+|||.++++++++|+..|+|+|.- +|.+.|++...+||
T Consensus 34 sy~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng 113 (636)
T KOG1501|consen 34 SYLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG 113 (636)
T ss_pred hHHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC
Confidence 35689999999999998886432211 22 2699999999999999999999999999999 89999999999999
Q ss_pred CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCcc
Q psy14674 125 LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDH 204 (519)
Q Consensus 125 ~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~ 204 (519)
++++|+++.....++..... .+.|+++.+.+..-+..|+.++++-.+..+++++|...+|.++++|+.++|+.....
T Consensus 114 ~SdkI~vInkrStev~vg~~-~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~~l~~-- 190 (636)
T KOG1501|consen 114 MSDKINVINKRSTEVKVGGS-SRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVESTFLCN-- 190 (636)
T ss_pred CccceeeeccccceeeecCc-chhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhhhhhh--
Confidence 99999999999998865421 569999999988888899999999999999999999999999999999998743210
Q ss_pred cccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhhcCCcccccC-CCCcccCCceEEEEecCCCC
Q psy14674 205 VVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVD-PKQVVTSSCLLKEIDLYTIT 283 (519)
Q Consensus 205 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~~~~~v~~~~-~~~~ls~~~~~~~~dl~~~~ 283 (519)
+.. ++|- ......+-.+.+. -..++.|..--. ..-+++..+ .-.+|+++..++.+||..-.
T Consensus 191 ----~nd-l~~~----~~~ts~gv~~~p~---~lesc~G~~sv~------d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~ 252 (636)
T KOG1501|consen 191 ----LND-LRNN----EAKTSDGVRLVPP---GLESCFGIKSVQ------DSQLVDAIEKEFKLLSSEGTIFYSDFPRWI 252 (636)
T ss_pred ----hhc-cccc----cccccCCcccCCC---ccccCCCchhHH------HHHHhhcchhhheeecCcceeEEeecchhh
Confidence 000 0000 0000000000000 012333321100 011112222 22578999999999998433
Q ss_pred CCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEecCCCCC---------CCCeeeEEEeeCc
Q psy14674 284 KADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---------YTHWKQTVFYLNE 343 (519)
Q Consensus 284 ~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT~P~~~---------~thW~q~v~~l~~ 343 (519)
......+..+......+|++.+...|||++++. ...+-+.-+|... ..||.|+++++++
T Consensus 253 ~s~s~~~~~r~~va~~Sg~~~~~l~wwdi~mD~-~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 253 DSNSEIEELRPPVAVHSGPLRSNLLWWDISMDQ-FGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred hcchhhhhhcCcccccccchhheeeeeeeeecc-CcceEEEecceecCCChHHHHHHHHHHHhcCCChh
Confidence 222222223445566799999999999999984 3445556666532 3679999999984
No 7
>PTZ00357 methyltransferase; Provisional
Probab=99.75 E-value=6.8e-17 Score=168.62 Aligned_cols=254 Identities=15% Similarity=0.200 Sum_probs=161.9
Q ss_pred EEEEECCcccHHHHHHHHc----C-CCEEEEEech-HHHHHHHHHH-HHCCC-------CCcEEEEEceeeEeecCC---
Q psy14674 81 IVLDIGCGTGILSMFAAKS----G-AARVIGIECS-NIVEYAKEIV-DKNNL-------SDVVTILKGKVEEVELPF--- 143 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~A~~~~-~~~~~-------~~~i~~~~~d~~~~~~~~--- 143 (519)
+|+-+|+|.|-|...+.++ | ..+|+|||.+ +.+...+.+. ....+ .++|+++..|+.++..+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 6899999999765433332 3 2379999999 6443433332 23344 456999999999985431
Q ss_pred ------CCceeeEEEEeccccccccchhHHHHHHHHhcccCc----Ce-------EEEccCCcccccccccccCCCcccc
Q psy14674 144 ------GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLAT----NG-------LLFPDKASLFICGIEDLQGGQDHVV 206 (519)
Q Consensus 144 ------~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkp----gG-------~lip~~~~~~~~~i~~~~~~~~~~~ 206 (519)
..+++|+||||.+|.+..+|-. +.+|+.+.+.||+ +| +.||...+-|+.||.+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELS-PECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISS--------- 852 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELS-PECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMS--------- 852 (1072)
T ss_pred cccccccccccceehHhhhcccccccCC-HHHHHHHHHhhhhhccccccccCCcceecchhhhhhcccccc---------
Confidence 1248999999999999888854 4567777788875 55 4889999955555543
Q ss_pred cceeEEecCCCcceeeecccCccccccceeeeecccccChh---h--hhhhhhcCCcccccCCCCcccCCceEEEEecCC
Q psy14674 207 GQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMS---C--IKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLYT 281 (519)
Q Consensus 207 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~---~--~~~~~~~~~~v~~~~~~~~ls~~~~~~~~dl~~ 281 (519)
..++..-... ...|+... + ........++|..+.....|+.|...++|...+
T Consensus 853 ---------------------pKLya~V~~~--~~~gltvP~p~c~~~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn 909 (1072)
T PTZ00357 853 ---------------------ATFDAAVTEA--AVKGLTVPPPGCHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRF 909 (1072)
T ss_pred ---------------------HHHHHHHHHh--hhcccccCCccccccchhhcccceEEEecceeecCCCcceeEEECCC
Confidence 3332110000 00010000 0 000112235565555555667778888887754
Q ss_pred CCCC-----------------CceeeeeEEEEEEecceeeEEEEEEEEEEcCCC--CceEEecCCCCC---CCCeeeEEE
Q psy14674 282 ITKA-----------------DLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCH--KRIGFSTAPEAH---YTHWKQTVF 339 (519)
Q Consensus 282 ~~~~-----------------~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~--~~v~lsT~P~~~---~thW~q~v~ 339 (519)
.... +......+.|++..++.+|||++||++.|+++. ..+.|||.|... .-+|.+.+|
T Consensus 910 ~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFF 989 (1072)
T PTZ00357 910 HGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVF 989 (1072)
T ss_pred cccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEE
Confidence 4311 123466788999999999999999999999521 127899999742 345999999
Q ss_pred eeC---ceeeecCCC---------EEEEEEEEEeCCCCCc
Q psy14674 340 YLN---EHLTVKKGE---------EVVGSFGMQPNPRNNR 367 (519)
Q Consensus 340 ~l~---~p~~v~~g~---------~i~~~~~~~~~~~~~~ 367 (519)
||+ ++..++.|+ .|++.++...+-...|
T Consensus 990 PLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r 1029 (1072)
T PTZ00357 990 ALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR 1029 (1072)
T ss_pred ecCccccceEeeccccccccccceeEEEeeeeccccccce
Confidence 997 666677776 5555555554444444
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.9e-16 Score=151.72 Aligned_cols=115 Identities=27% Similarity=0.459 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec
Q psy14674 64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL 141 (519)
Q Consensus 64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~ 141 (519)
..+++++.......+|.+|||||||||.+++.+++. |..+|+|+|+| .|++.|+++....+..+ ++++++|++++++
T Consensus 37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf 115 (238)
T COG2226 37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC
Confidence 344455555555568999999999999999999987 66799999999 69999999999988887 9999999999998
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
++ ++||+|.+... +.+-.+.+.+|+++.|+|||||+++
T Consensus 116 ~D--~sFD~vt~~fg---lrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 116 PD--NSFDAVTISFG---LRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred CC--CccCEEEeeeh---hhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 87 99999976554 6666778999999999999999776
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.68 E-value=2.2e-16 Score=135.03 Aligned_cols=107 Identities=31% Similarity=0.440 Sum_probs=88.5
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEeecCCCCceeeEEEEe
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEVELPFGIQKVDIIISE 154 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~~~D~Ivs~ 154 (519)
|+.+|||||||+|.++..+++. +..+|+|+|+| +|++.|++++...+..++++++++|+ ...... ++||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL---EPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS---SCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC---CCCCEEEEC
Confidence 5789999999999999999993 55599999999 69999999998888889999999999 332333 689999998
Q ss_pred c-cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 W-MGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~-~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
. ..+.+........+++.+.+.|+|||+++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 33333333567788999999999999998764
No 10
>KOG1500|consensus
Probab=99.66 E-value=1.6e-16 Score=153.64 Aligned_cols=106 Identities=23% Similarity=0.341 Sum_probs=91.6
Q ss_pred ccccccccceeccceeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCCCCCceeEEEeecccccccCCCE
Q psy14674 399 LGLRDRDCMYTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEE 478 (519)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~~THWkQt~~~l~~~~~v~~g~~ 478 (519)
+++++.++.-.++. .+..|+++.+...|.+||+++||||.|.++...+.|||+|.+|.|||.|..++|..||-|.+|+.
T Consensus 348 h~~dF~~~kEedlh-~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~~~wlsTap~apltHwyqvrCll~~Pi~v~aGq~ 426 (517)
T KOG1500|consen 348 HVIDFLNMKEEDLH-EIDIPLKFHALQCGRIHGLAFWFDVLFDGSTVQVWLSTAPTAPLTHWYQVRCLLSQPIFVKAGQT 426 (517)
T ss_pred hhhhhhhcccchhe-eecccceehhhhhcceeeeeeEEEEEeccceEEEccCCCCCCCcccceeeeeeccCchhhhcCCe
Confidence 34555555444443 58899999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCceeEEEEEEEEcC
Q psy14674 479 VVGSFGMQPNPRNNRDLDFTVEVNFKG 505 (519)
Q Consensus 479 i~g~~~~~~~~~~~r~l~i~~~~~~~~ 505 (519)
|+|++.+..|+..+++++|+++.....
T Consensus 427 ltGr~~LiA~~~QSY~i~i~l~~~~~l 453 (517)
T KOG1500|consen 427 LTGRLLLIANSRQSYDITITLSAKMTL 453 (517)
T ss_pred eeeeEEEEEccccceeEEEEEEeeeee
Confidence 999999999998888777777665443
No 11
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.66 E-value=2.6e-16 Score=153.30 Aligned_cols=169 Identities=19% Similarity=0.188 Sum_probs=126.1
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
+.++....+.+|++|||||||.|.+++++|+.-..+|+|+++| ++.+.++++++..|+.++|+++..|..++. +
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-----e 136 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-----E 136 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc-----c
Confidence 4666778999999999999999999999999833499999999 799999999999999989999999998753 5
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCcccccceeEEecCCCcce----ee
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL----FI 222 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~----~~ 222 (519)
+||-|||-.+..++..+ ..+.++..+.++|+|||.++....+-.-. . . .....++.+++||++.-. ..
T Consensus 137 ~fDrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh~I~~~~~-----~-~-~~~~~~i~~yiFPgG~lPs~~~i~ 208 (283)
T COG2230 137 PFDRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLHSITGPDQ-----E-F-RRFPDFIDKYIFPGGELPSISEIL 208 (283)
T ss_pred ccceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEEEecCCCc-----c-c-ccchHHHHHhCCCCCcCCCHHHHH
Confidence 69999998887776654 47888999999999999999777661110 0 0 044567788999997632 11
Q ss_pred ecccCccccccceeeeecccccChhhh
Q psy14674 223 CGIEDRQYKEDKITWWDNVYGFDMSCI 249 (519)
Q Consensus 223 ~~~~~~~~~~~~~~~w~~~~G~d~~~~ 249 (519)
...++.++....+......|-..+..+
T Consensus 209 ~~~~~~~~~v~~~~~~~~hYa~Tl~~W 235 (283)
T COG2230 209 ELASEAGFVVLDVESLRPHYARTLRLW 235 (283)
T ss_pred HHHHhcCcEEehHhhhcHHHHHHHHHH
Confidence 223444444444444444444444443
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.63 E-value=9e-16 Score=148.39 Aligned_cols=109 Identities=24% Similarity=0.397 Sum_probs=79.2
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
+.......+|.+|||+|||||.++..+++. + ..+|+|+|+| +|++.|+++.+..+.. +|+++++|++++++++ +
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d--~ 115 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPD--N 115 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-T--T
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCC--C
Confidence 333345678899999999999999988876 3 4599999999 6999999999988876 6999999999998887 9
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+||+|++... +.+-.+....+.++.|+|||||.++
T Consensus 116 sfD~v~~~fg---lrn~~d~~~~l~E~~RVLkPGG~l~ 150 (233)
T PF01209_consen 116 SFDAVTCSFG---LRNFPDRERALREMYRVLKPGGRLV 150 (233)
T ss_dssp -EEEEEEES----GGG-SSHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEHHhh---HHhhCCHHHHHHHHHHHcCCCeEEE
Confidence 9999988665 3333457788999999999999887
No 13
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.61 E-value=6e-16 Score=152.91 Aligned_cols=173 Identities=23% Similarity=0.268 Sum_probs=112.0
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674 68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145 (519)
Q Consensus 68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 145 (519)
+.+.+...+.+|.+|||||||.|.+++.+|+. |+ +|+||.+| +..+.|+++++..|+.+++++..+|..++ +
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~--~--- 125 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL--P--- 125 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc--C---
Confidence 35567788999999999999999999999998 76 99999999 69999999999999999999999998764 3
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccccccCCCcccccceeEEecCCCcce----e
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL----F 221 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~----~ 221 (519)
.+||.|+|-.+..++.. ..++.+++.+.++|||||.++.+..+..-..-.. .......++.+++||++.-. +
T Consensus 126 ~~fD~IvSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEI 201 (273)
T ss_dssp -S-SEEEEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHH
T ss_pred CCCCEEEEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHH
Confidence 58999999877666543 4678889999999999999997765521111100 00001245677889986522 2
Q ss_pred eecccCccccccceeeeecccccChhhhh
Q psy14674 222 ICGIEDRQYKEDKITWWDNVYGFDMSCIK 250 (519)
Q Consensus 222 ~~~~~~~~~~~~~~~~w~~~~G~d~~~~~ 250 (519)
+...+..++....+.-+...|...+..+.
T Consensus 202 ~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~ 230 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLGRHYARTLRAWR 230 (273)
T ss_dssp HHHHHHTT-EEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEEEcCcCHHHHHHHHH
Confidence 22233344443333333444555554443
No 14
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.59 E-value=2e-15 Score=142.16 Aligned_cols=105 Identities=29% Similarity=0.381 Sum_probs=91.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+|++|||||||-|.++..+|+.|+ +|+|+|++ ++++.|+.....+++. +.+.+..++++.... ++||+|+|.-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~--~~FDvV~cmE 132 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAG--GQFDVVTCME 132 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcC--CCccEEEEhh
Confidence 6899999999999999999999996 99999999 6999999999999876 778888888875443 7999999977
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|..|. .+.+.++.++.+++||||.++.++..
T Consensus 133 VlEHv---~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 133 VLEHV---PDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHHcc---CCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 74444 55677899999999999999988876
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.56 E-value=1.9e-14 Score=145.17 Aligned_cols=107 Identities=23% Similarity=0.287 Sum_probs=89.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++.+|||||||+|.++..+++.|+ +|+|||++ +|++.|+++....+...+++++++++++++.+. ++||+|++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~--~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEG--RKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhcc--CCCCEEEEhh
Confidence 4678999999999999999998876 99999999 699999988777666567999999998876554 7899999977
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.+++ .....++.++.++|||||.++.....
T Consensus 207 vLeHv---~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 207 VIEHV---ANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred HHHhc---CCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 65544 34678899999999999999977544
No 16
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.54 E-value=5.1e-14 Score=139.01 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=90.6
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHH--HCCCCCcEEEEEceeeEee
Q psy14674 66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVD--KNNLSDVVTILKGKVEEVE 140 (519)
Q Consensus 66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~--~~~~~~~i~~~~~d~~~~~ 140 (519)
+++.+.....+.++.+|||+|||+|.++..+++. + ..+|+|+|+| +|++.|+++.. ..+...+++++++|+++++
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 3333333445677899999999999999988875 3 3599999999 69999987754 2223346999999999887
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+++ ++||+|++....+++ .....++.++.|+|||||.++...
T Consensus 141 ~~~--~sfD~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 141 FDD--CYFDAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCC--CCEeEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEE
Confidence 775 789999987664433 457788999999999999987543
No 17
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=5e-14 Score=133.24 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=87.8
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
...++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++++.+++.+ ++++.+|+.++.++ ++||+|++
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~---~~fD~I~~ 101 (197)
T PRK11207 27 KVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFD---GEYDFILS 101 (197)
T ss_pred ccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcC---CCcCEEEE
Confidence 345678999999999999999999876 99999999 69999999999888854 88999998876554 67999999
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..+.+++. ......++.++.++|+|||.++
T Consensus 102 ~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 102 TVVLMFLE-AKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ecchhhCC-HHHHHHHHHHHHHHcCCCcEEE
Confidence 87765543 3457888999999999999854
No 18
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=2.9e-14 Score=117.45 Aligned_cols=94 Identities=31% Similarity=0.466 Sum_probs=78.4
Q ss_pred EEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccc
Q psy14674 83 LDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLF 161 (519)
Q Consensus 83 LDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~ 161 (519)
||+|||+|..+..+++.+..+|+|+|++ ++++.++++....+ +.++.+|++++++++ ++||+|++....+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~--~sfD~v~~~~~~~~~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPFPD--NSFDVVFSNSVLHHL- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-T--T-EEEEEEESHGGGS-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcccc--ccccccccccceeec-
Confidence 8999999999999999966699999999 69999999876543 669999999987776 899999998876655
Q ss_pred cchhHHHHHHHHhcccCcCeEEEc
Q psy14674 162 YESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 162 ~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.....+++++.|+|||||.++.
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 5688899999999999999873
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.53 E-value=7.4e-14 Score=130.38 Aligned_cols=104 Identities=23% Similarity=0.336 Sum_probs=87.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
.+.++.+|||+|||+|..++.+++. +..+|+|+|++ +|++.|+++++.+++.+ ++++++|+.++.. . ++||+|+
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-~--~~fDlV~ 117 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-E--EKFDVVT 117 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-C--CCccEEE
Confidence 3445899999999999999988864 56699999999 69999999999999876 9999999988654 2 7999999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+..+ ..++.++.++.++|||||.++.-...
T Consensus 118 ~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 118 SRAV-------ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred Eccc-------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8653 23567888999999999999866544
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.53 E-value=6.8e-14 Score=126.75 Aligned_cols=106 Identities=31% Similarity=0.482 Sum_probs=88.2
Q ss_pred CCCCEEEEECCcccHHHHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAA-KS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDII 151 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la-~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~I 151 (519)
.++.+|||+|||+|.++..++ +. +..+++|+|+| +|++.|+++++.+++. +++++++|+.+++ ++ ++||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~---~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE---EKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS---TTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC---CCeeEE
Confidence 467899999999999999999 43 35699999999 6999999999999998 6999999999865 33 689999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++..+. .+......+++.+.++|++||.++.....
T Consensus 78 ~~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 998774 33455678899999999999999855544
No 21
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=3.7e-14 Score=133.91 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
...++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.++++++.+++. +.+..+|+...+++ ++||+|++
T Consensus 27 ~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~---~~fD~I~~ 100 (195)
T TIGR00477 27 KTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN---EDYDFIFS 100 (195)
T ss_pred ccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc---CCCCEEEE
Confidence 344567999999999999999999876 99999999 6999999999888874 77788887655544 67999999
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..+.+++.. .....+++.+.++|||||.++
T Consensus 101 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 101 TVVFMFLQA-GRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ecccccCCH-HHHHHHHHHHHHHhCCCcEEE
Confidence 887665533 457788999999999999855
No 22
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.52 E-value=1.1e-13 Score=128.69 Aligned_cols=106 Identities=19% Similarity=0.317 Sum_probs=86.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
....++.++||+|||.|..++++|+.|. .|+|+|.| ..++.+++.++..+++ |+....|+.+..++ +.||+|+
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~---~~yD~I~ 99 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP---EEYDFIV 99 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T---TTEEEEE
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc---CCcCEEE
Confidence 3455678999999999999999999999 89999999 5899999999988886 99999999988776 7899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
|..+.+++.. +..+.+++.+...++|||+++..
T Consensus 100 st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMFLQR-ELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEE
Confidence 9877777664 46788999999999999998753
No 23
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.52 E-value=1.1e-13 Score=134.36 Aligned_cols=115 Identities=21% Similarity=0.289 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674 66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP 142 (519)
Q Consensus 66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~ 142 (519)
+++.++....+.++.+|||+|||+|.++..+++. + ..+|+|+|+| ++++.|+++.+..++ ++++++.+|+.+++++
T Consensus 33 ~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 33 WRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCC
Confidence 3445555566778899999999999999988875 3 4599999999 699999999988877 4599999999887666
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
. ++||+|++....+ +......+++++.++|+|||.++..
T Consensus 112 ~--~~fD~V~~~~~l~---~~~~~~~~l~~~~~~Lk~gG~l~~~ 150 (231)
T TIGR02752 112 D--NSFDYVTIGFGLR---NVPDYMQVLREMYRVVKPGGKVVCL 150 (231)
T ss_pred C--CCccEEEEecccc---cCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 5 7999999865533 3344667889999999999998743
No 24
>KOG1270|consensus
Probab=99.51 E-value=1.3e-14 Score=137.41 Aligned_cols=102 Identities=30% Similarity=0.411 Sum_probs=84.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCC-----cEEEEEceeeEeecCCCCceeeEEE
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD-----VVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
|++|||+|||+|+++..+|+.|+ .|+|||++ .|++.|++........+ ++++.+.+++... ++||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cccceee
Confidence 47899999999999999999987 99999999 69999999865554433 3677777777643 6799999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|.-+ +.|-.+++.++..+.++|||||.++.....
T Consensus 164 csev---leHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 164 CSEV---LEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eHHH---HHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 9776 445567889999999999999999977665
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=99.51 E-value=1.2e-13 Score=141.44 Aligned_cols=106 Identities=22% Similarity=0.222 Sum_probs=90.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++.+|||||||+|.++..+++....+|+|+|+| .|++.|+++++.+++.++++++.+|+.++++++ ++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~--~~FD~V~s~~ 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFED--GQFDLVWSME 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCC--CCccEEEECC
Confidence 6788999999999999999998633499999999 699999999999998888999999999877665 8999999966
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
..+++ .....++.++.++|||||.++...
T Consensus 195 ~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHM---PDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhcc---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 64444 346778999999999999998643
No 26
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.48 E-value=1.2e-13 Score=137.29 Aligned_cols=100 Identities=32% Similarity=0.467 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++++|||+|||||+|++.+++.|+++|+|+|++ .+++.|++|++.|++.+++.+. ... ..+. ++||+|++|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~--~~~~--~~~dlvvAN 232 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSE--DLVE--GKFDLVVAN 232 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTS--CTCC--S-EEEEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eec--cccc--ccCCEEEEC
Confidence 56788999999999999999999999999999999 5999999999999999877663 111 2333 799999999
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.... .+..++..+.++|+|||.++.+-
T Consensus 233 I~~~------vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 233 ILAD------VLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp S-HH------HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHhhCCCCEEEEcc
Confidence 8633 34566777889999999998653
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.47 E-value=3.3e-13 Score=125.72 Aligned_cols=101 Identities=25% Similarity=0.407 Sum_probs=83.1
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
++.+|||+|||+|.+++.+++.+ ..+|+|+|.| +|++.|+++++.+++.+ ++++++|++++.. . ++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~-~--~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQH-E--EQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccc-c--CCccEEEehh
Confidence 48899999999999999888763 5689999999 69999999999998865 9999999988632 2 7899999975
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+ ..+..+++.+.++|+|||.++.....
T Consensus 118 ~-------~~~~~~~~~~~~~LkpgG~lvi~~~~ 144 (181)
T TIGR00138 118 L-------ASLNVLLELTLNLLKVGGYFLAYKGK 144 (181)
T ss_pred h-------hCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 2 12455677788999999999865443
No 28
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.4e-13 Score=135.36 Aligned_cols=103 Identities=33% Similarity=0.439 Sum_probs=82.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..+|++|||+|||||+|++.+++.|+++|+|+|+++ +++.|++|++.|++...++....+..+.. .. ++||+||+|
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~--~~~DvIVAN 236 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-EN--GPFDVIVAN 236 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-cc--CcccEEEeh
Confidence 458999999999999999999999999999999995 89999999999998753333333333322 21 689999999
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.+.. .+..+...+.+.|||||+++.+-
T Consensus 237 ILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 237 ILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred hhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 8633 35567788889999999998664
No 29
>KOG1540|consensus
Probab=99.47 E-value=5.1e-13 Score=125.83 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=93.5
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CC------CEEEEEech-HHHHHHHHHHHHCCCCCc--EEEEEcee
Q psy14674 67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GA------ARVIGIECS-NIVEYAKEIVDKNNLSDV--VTILKGKV 136 (519)
Q Consensus 67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~gvD~s-~~~~~A~~~~~~~~~~~~--i~~~~~d~ 136 (519)
.+.........++.+|||++||||.++..+.+. +. ++|+.+|+| +|++.++++..+.++... +.++.+|+
T Consensus 89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 444444566677899999999999999887775 33 699999999 699999999988888755 99999999
Q ss_pred eEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 137 ~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+++++++ ..+|+.... +.+.+-...+..+++++|+|||||++.
T Consensus 169 E~LpFdd--~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 169 EDLPFDD--DSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred ccCCCCC--CcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 9998887 899999653 335555668888999999999999886
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=3.1e-13 Score=133.13 Aligned_cols=104 Identities=22% Similarity=0.206 Sum_probs=87.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~Ivs~ 154 (519)
.++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++++..++.++++++++|+.++. .+. ++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~--~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE--TPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC--CCCCEEEeh
Confidence 4567999999999999999999875 99999999 699999999999998888999999998763 333 789999997
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.+.+++ .....++..+.++|||||.++..
T Consensus 120 ~vl~~~---~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 120 AVLEWV---ADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hHHHhh---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 765544 33567889999999999998743
No 31
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=4.1e-13 Score=135.01 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=87.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.++......+|++|||||||+|.++..++..|+.+|+|+|+| .|+..++...+..+...++.+..+++++++.. .+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~---~~ 188 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL---YA 188 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC---CC
Confidence 344445567889999999999999998888888899999999 58776544333222234688888888876543 58
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
||+|+|..+.++. .....++.++++.|||||.++.+..
T Consensus 189 FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 189 FDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred cCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999998775544 4566789999999999999997653
No 32
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.44 E-value=6.4e-13 Score=134.90 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=86.5
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
.....+|++|||||||+|.++..+++.|+.+|+|+|+| .|+..++......+...++.++.+++++++.+ ++||+|
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~---~~FD~V 193 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL---KAFDTV 193 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCc---CCcCEE
Confidence 34445789999999999999999999988889999999 57776555444333344699999999987663 789999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+|..+.++ ......++..+++.|+|||.++.+.
T Consensus 194 ~s~~vl~H---~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 194 FSMGVLYH---RRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred EECChhhc---cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99766443 3456778999999999999999764
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=9.2e-13 Score=121.65 Aligned_cols=104 Identities=31% Similarity=0.485 Sum_probs=84.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAA-RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
++.+|||+|||+|.+++.+++.+.. +|+++|++ .+++.|+++++.|++.+ ++++.+|+.+. ++. ++||+|+|++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~--~~fD~Iv~NP 106 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPD--GKFDLIVSNP 106 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCT--TCEEEEEE--
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccc--cceeEEEEcc
Confidence 6789999999999999999998554 79999999 69999999999999988 99999998663 333 7999999998
Q ss_pred ccccccc--chhHHHHHHHHhcccCcCeEEEc
Q psy14674 156 MGYCLFY--ESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 156 ~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip 185 (519)
..+.... ...+..++....++|+|||.++.
T Consensus 107 P~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 107 PFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp -SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred chhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 7433221 13567888899999999998853
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.43 E-value=5.4e-13 Score=130.79 Aligned_cols=107 Identities=18% Similarity=0.350 Sum_probs=88.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
+.++.+|||||||+|.++..+++. +..+|+|+|+| +|++.|+++++.++..++++++++|+.+++. +.+|+|
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~v 129 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASMV 129 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCEE
Confidence 457789999999999998888762 45699999999 6999999999988888789999999987644 358999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
++....+++.. .....++..+.+.|||||.++...
T Consensus 130 v~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 130 VLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred ehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 98777666653 346788999999999999988653
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=5.9e-13 Score=133.39 Aligned_cols=101 Identities=22% Similarity=0.328 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++.+|||+|||+|..+..+++.|. +|+|+|.| .+++.++++++.+++ ++++...|+....++ ++||+|++..
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~---~~fD~I~~~~ 192 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQ---EEYDFILSTV 192 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccccc---CCccEEEEcc
Confidence 3456999999999999999999876 99999999 699999999998888 488888888775553 7899999988
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.+++. ......++..+.++|+|||+++
T Consensus 193 vl~~l~-~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 193 VLMFLN-RERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred hhhhCC-HHHHHHHHHHHHHhcCCCcEEE
Confidence 766654 3457788999999999999865
No 36
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=5.7e-13 Score=127.79 Aligned_cols=109 Identities=24% Similarity=0.342 Sum_probs=90.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
.....+|||+|||+|.+++++|++ ...+++|||++ ++++.|+++++.|++.++|+++++|+.++.......+||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 344789999999999999999998 65799999999 6999999999999999999999999998844333357999999
Q ss_pred eccccccccc---------------hhHHHHHHHHhcccCcCeEEE
Q psy14674 154 EWMGYCLFYE---------------SMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 154 ~~~~~~l~~e---------------~~l~~~l~~~~r~LkpgG~li 184 (519)
++..+-.... ..++.+++...++|||||.+.
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 9864322211 346788889999999999886
No 37
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.40 E-value=9e-13 Score=113.56 Aligned_cols=105 Identities=31% Similarity=0.475 Sum_probs=85.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEec
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISEW 155 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~~ 155 (519)
|.+|||+|||+|.++..+++.+..+++|+|++ ..++.|++++..+++.++++++++|+.+.. ++. ++||+|++++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 56899999999999999999886799999999 599999999999999888999999998875 444 8999999988
Q ss_pred cccccc-----cchhHHHHHHHHhcccCcCeEEEc
Q psy14674 156 MGYCLF-----YESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 156 ~~~~l~-----~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
...... .......+++++.++|||||.++.
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 643211 112456778899999999998874
No 38
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.40 E-value=1.6e-12 Score=128.50 Aligned_cols=112 Identities=22% Similarity=0.279 Sum_probs=88.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
++....+.++.+|||||||+|..+..+++....+|+|+|+| .|++.|+++... .+++.++.+|+.+.+++. ++|
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~--~~F 118 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE--NTF 118 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC--CCe
Confidence 44456778899999999999999988877533499999999 699999987654 356999999998766665 799
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
|+|++....+++. ......+++++.++|||||.++...
T Consensus 119 D~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 119 DMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999955433332 1257788999999999999998654
No 39
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=6.5e-13 Score=111.61 Aligned_cols=95 Identities=25% Similarity=0.469 Sum_probs=76.0
Q ss_pred EEEECCcccHHHHHHHHc---C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 82 VLDIGCGTGILSMFAAKS---G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 82 VLDiGcGtG~ls~~la~~---g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
|||+|||+|..+..+++. + ..+++|+|+| +|++.|+++....+. +++++++|+.+++... ++||+|++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~--~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSD--GKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHS--SSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccC--CCeeEEEEcCC
Confidence 799999999999988876 3 2699999999 699999999988666 5899999999876554 79999999433
Q ss_pred -ccccccchhHHHHHHHHhcccCcCe
Q psy14674 157 -GYCLFYESMLDTVLYARDKWLATNG 181 (519)
Q Consensus 157 -~~~l~~e~~l~~~l~~~~r~LkpgG 181 (519)
.++ .....+..+++.+.++|+|||
T Consensus 77 ~~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 444 455678899999999999998
No 40
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.39 E-value=5.2e-12 Score=109.61 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=84.9
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
...+.++.+|||+|||+|.++..+++. +..+|+|+|.| .+++.|+++++.+++. +++++.+|+.... +...++||+
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~D~ 91 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL-EDSLPEPDR 91 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC-hhhcCCCCE
Confidence 345566789999999999999999886 45799999999 6999999999988876 4899988876531 111268999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
|++.... .....+++.+.++|+|||.++.+..
T Consensus 92 v~~~~~~------~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 92 VFIGGSG------GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEECCcc------hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9985421 2346788999999999999987643
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.39 E-value=1.7e-12 Score=127.66 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
....++.+|||+|||+|.++..+++.|. +|+|+|+| +|++.|+++... +.++++|+++++++. ++||+|+
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~~~~~~--~~fD~V~ 108 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPLAT--ATFDLAW 108 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC------CCEEEcCcccCcCCC--CcEEEEE
Confidence 3344578999999999999999988765 99999999 699999876431 468899999877665 7899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
++...+ +...+..++.++.++|+|||.++...
T Consensus 109 s~~~l~---~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 109 SNLAVQ---WCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred ECchhh---hcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 977633 33457788999999999999998654
No 42
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.39 E-value=1.4e-12 Score=137.30 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=62.7
Q ss_pred eeeeeceEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCC----CCCCceeEEEeecccccccCCCEEEEEEEEEeC
Q psy14674 413 TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEA----HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPN 488 (519)
Q Consensus 413 ~~~~~~f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~----~~THWkQt~~~l~~~~~v~~g~~i~g~~~~~~~ 488 (519)
..+...++++++++|.+|||++|||+.|.++ |.|||+|.. +.|||+|++|+|++|+.|++|+.|+++|..+.+
T Consensus 360 ~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~---V~LSt~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~ 436 (448)
T PF05185_consen 360 NSRSSELEFKIKRDGVVHGFAGWFDAVLYGD---VVLSTSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTD 436 (448)
T ss_dssp SEEEEEEEEEBSSSEEEEEEEEEEEEEEECS---EEEESSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECC
T ss_pred hheeeeEEEeeCCCcEEEEEEEEEEEEeeCC---eeeecCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcC
Confidence 4577899999999999999999999999865 999999998 899999999999999999999999988775554
No 43
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=4.5e-12 Score=120.70 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=83.5
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
+++.....++.+|||||||+|..+..+++. + ..+|+|+|++ ++++.|+++++.+++.++++++.+|+.+..... +
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~--~ 141 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH--A 141 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC--C
Confidence 334455678899999999999999888875 2 4589999999 699999999999998878999999998643222 6
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+||+|++...... +..++.+.|+|||+++...
T Consensus 142 ~fD~Ii~~~~~~~---------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAAST---------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcch---------hhHHHHHhcCcCcEEEEEE
Confidence 8999998765221 2235568899999987543
No 44
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.37 E-value=3.3e-12 Score=127.10 Aligned_cols=108 Identities=25% Similarity=0.364 Sum_probs=88.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
..+.++.+|||+|||+|..+..+++. |. .+|+|+|++ +|++.|+++....++. +++++.+|+++++++. ++||+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~--~~fD~ 149 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVAD--NSVDV 149 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCC--CceeE
Confidence 34678999999999999988877765 43 489999999 6999999999888875 5899999998877665 78999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
|+++.+.++. .....+++++.++|||||.++...
T Consensus 150 Vi~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 150 IISNCVINLS---PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EEEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 9998775433 345678899999999999998654
No 45
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.37 E-value=4e-12 Score=127.37 Aligned_cols=102 Identities=30% Similarity=0.449 Sum_probs=84.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++++|||+|||+|.++..+++.|+.+|+|+|++ .+++.|++++..+++.+++.+..++... ... ++||+|+++
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~--~~fDlVvan 232 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIE--GKADVIVAN 232 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccC--CCceEEEEe
Confidence 35789999999999999999999888899999999 5999999999999998878888776432 222 789999998
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.+. ..+..++..+.++|||||.++.+-
T Consensus 233 ~~~------~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 233 ILA------EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred cCH------HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 652 234567888899999999998654
No 46
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=2.3e-12 Score=118.44 Aligned_cols=106 Identities=25% Similarity=0.290 Sum_probs=82.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
..-.++||+|||.|.++..+|.+ ..+++++|+| .+++.|+++++. .+ +|+++++++.+.. |. ++||+||..-
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~-P~--~~FDLIV~SE 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFW-PE--GRFDLIVLSE 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT----S--S-EEEEEEES
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCC-CC--CCeeEEEEeh
Confidence 34468999999999999999988 5699999999 599999999865 33 4999999998754 43 8999999999
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++|++.....+..++..+...|+|||.+|.....
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9999987777889999999999999999976544
No 47
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.36 E-value=3.6e-12 Score=124.38 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=87.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
.++.+|||||||+|.++..+++. +..+|+|+|+| +|++.|+++++..+...+++++++|+.+++++ .+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK----NASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC----CCCEEe
Confidence 47789999999999999988874 35689999999 69999999998877666799999999876543 589999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+....+++.. .....+++.+.+.|+|||.++...
T Consensus 128 ~~~~l~~~~~-~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 128 LNFTLQFLPP-EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eecchhhCCH-HHHHHHHHHHHHhcCCCeEEEEee
Confidence 8777665543 346778999999999999998664
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=6.6e-12 Score=129.07 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=84.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCC--CcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLS--DVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~--~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
.+.+|||+|||+|.+++.+++. +..+|+++|.| .+++.|+++++.|+.. .+++++.+|+.+. ++. ++||+|+|
T Consensus 228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~--~~fDlIls 304 (378)
T PRK15001 228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEP--FRFNAVLC 304 (378)
T ss_pred cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCC--CCEEEEEE
Confidence 3569999999999999999887 45699999999 6999999999988754 3689999888653 332 58999999
Q ss_pred eccccccc--cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 154 EWMGYCLF--YESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 154 ~~~~~~l~--~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
++..|... .......++....+.|+|||.++.-
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 98755332 2234567888889999999988754
No 49
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.35 E-value=3e-12 Score=123.58 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=85.9
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674 80 KIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~ 157 (519)
++|||||||+|.++..+++. +..+|+|+|+| ++++.|+++++..|+.++++++.+|+.+.+.+ ++||+|++..+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~---~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP---DTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC---CCCCEeehHHHH
Confidence 47999999999999988876 34689999999 69999999999999999999999998765444 689999987664
Q ss_pred cccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 158 YCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
++. .....+++++.++|||||.++...
T Consensus 78 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 78 HHI---KDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HhC---CCHHHHHHHHHHHcCCCCEEEEEE
Confidence 444 346788999999999999998653
No 50
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=4.4e-12 Score=125.00 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=82.7
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
++......++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|++. +++++++|++++. +. ++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~-~~--~~ 89 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK-PK--PD 89 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC-CC--CC
Confidence 334455677899999999999999988887 34589999999 699998752 2789999998763 33 78
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
||+|+|..+.+++. ....++.++.+.|||||.++..
T Consensus 90 fD~v~~~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVP---EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCC---CHHHHHHHHHHhCCCCcEEEEE
Confidence 99999988766553 4577889999999999999864
No 51
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.34 E-value=4.5e-12 Score=125.07 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=85.1
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
.++....+.++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .++.++.+|+.++. +. +
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~-~~--~ 92 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ-PP--Q 92 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC-CC--C
Confidence 4444556677899999999999999988876 45699999999 6999998764 23789999998764 32 6
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+||+|++....+++ .....++..+.+.|||||.++...
T Consensus 93 ~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 93 ALDLIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CccEEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 89999998775544 345678999999999999988653
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.34 E-value=7.1e-12 Score=134.66 Aligned_cols=108 Identities=24% Similarity=0.320 Sum_probs=87.5
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
...+.++.+|||||||+|.++..+++....+|+|+|+| +|++.|+++.. +...+++++.+|+.+.+++. ++||+|
T Consensus 261 ~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~--~~fD~I 336 (475)
T PLN02336 261 KLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPD--NSFDVI 336 (475)
T ss_pred hcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCC--CCEEEE
Confidence 33456788999999999999998887634499999999 69999988765 44456999999998877665 789999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+|..+.+++ .....++.++.++|||||.++...
T Consensus 337 ~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 337 YSRDTILHI---QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred EECCccccc---CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 997664433 456788999999999999998654
No 53
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=117.21 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=88.0
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
....+.++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++.+|+.+. ++...++|
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~-l~~~~~~~ 112 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI-LFTINEKF 112 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-HhhcCCCC
Confidence 3456788999999999999999988875 3 4699999999 69999999999999767799999998764 11111679
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|.|++..- ...+..+++.+.+.|+|||.++.+..+
T Consensus 113 D~V~~~~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 113 DRIFIGGG------SEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred CEEEECCC------cccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 99988431 134567788888999999999875554
No 54
>PRK06922 hypothetical protein; Provisional
Probab=99.32 E-value=7.3e-12 Score=134.41 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=86.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDI 150 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~ 150 (519)
...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++....+. ++.++++|+.+++ ++. ++||+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fed--eSFDv 490 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEK--ESVDT 490 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCC--CCEEE
Confidence 4457889999999999988877764 55699999999 699999988766543 4889999988765 444 78999
Q ss_pred EEEeccccccc----------cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 151 IISEWMGYCLF----------YESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 151 Ivs~~~~~~l~----------~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
|+++.+.|.+. ....+..+++++.++|||||.++...
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 99987655331 12356788999999999999998754
No 55
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.32 E-value=1.9e-11 Score=114.63 Aligned_cols=103 Identities=27% Similarity=0.324 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
..+.++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++. +++++.+|+.. .++ ++||+|
T Consensus 27 l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~---~~~D~v 101 (187)
T PRK08287 27 LELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELP---GKADAI 101 (187)
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcC---cCCCEE
Confidence 45568889999999999999998886 34699999999 6999999999988875 49999988753 333 689999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
++.... ..+..++..+.++|+|||.++...
T Consensus 102 ~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 102 FIGGSG------GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EECCCc------cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 986432 134567788889999999998653
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.32 E-value=1.7e-11 Score=127.31 Aligned_cols=110 Identities=26% Similarity=0.282 Sum_probs=86.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.+.....+.++.+|||||||+|.++..+++....+|+|+|+| ++++.|+++++ ++ .+++..+|..++ + ++
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~---~~ 228 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--N---GQ 228 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--C---CC
Confidence 444556678899999999999999999988633499999999 69999999874 33 378888887654 3 68
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
||+|++..+.++... ..+..+++.+.++|||||.++....
T Consensus 229 fD~Ivs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 229 FDRIVSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCEEEEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999776554432 3467789999999999999987643
No 57
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.31 E-value=1.2e-11 Score=118.58 Aligned_cols=106 Identities=25% Similarity=0.222 Sum_probs=81.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
+++...+.++.+|||||||+|.++..+++.. ..+|+++|++ ++++.|+++++.+++. +++++.+|+.+..... +
T Consensus 69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~~--~ 145 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEPL--A 145 (215)
T ss_pred HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCccc--C
Confidence 3334557789999999999999999998873 2469999999 6999999999999984 5999999997643222 6
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+||+|++..... .+...+.+.|+|||+++...
T Consensus 146 ~fD~Ii~~~~~~---------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGP---------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCcc---------cccHHHHHhcCcCcEEEEEE
Confidence 899999865321 12344567899999988543
No 58
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=117.93 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=82.1
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
++....+.++.+|||||||+|.++..+++. + ..+|+++|++ ++++.|+++++.+++. +++++++|..+...+. +
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~~~--~ 144 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYEEN--A 144 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCCcC--C
Confidence 334456778999999999999999988876 3 3599999999 6999999999998875 5999999987653333 7
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+||+|++..... .+..++.+.|||||+++...
T Consensus 145 ~fD~I~~~~~~~---------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGP---------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcc---------cchHHHHHhhCCCcEEEEEE
Confidence 899998854311 12234567899999987543
No 59
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.31 E-value=1.3e-11 Score=115.01 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++.+|||+|||+|.++..+++.+. +|+|+|+| .|++.|+++++.++. +++++.+|+.+. .+ ++||+|+++
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~---~~fD~Vi~n 89 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKG-VR---GKFDVILFN 89 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccc-cC---CcccEEEEC
Confidence 34567899999999999999999876 99999999 699999999998876 388999998763 22 689999998
Q ss_pred cccccccc------------------chhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFY------------------ESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~------------------e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+..+.... ......++.++.++|+|||.++...
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 75432221 1125678889999999999887543
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.31 E-value=9e-12 Score=118.30 Aligned_cols=109 Identities=22% Similarity=0.205 Sum_probs=84.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee-eEee--cCCCCceeeEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV-EEVE--LPFGIQKVDIII 152 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~~~~D~Iv 152 (519)
++.+|||+|||+|.++..+++. +..+|+|+|+| +|++.|+++++.+++. +++++++|+ +.+. ++. ++||+|+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~--~~~D~V~ 116 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPD--GSLDRIY 116 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCc--cccceEE
Confidence 5779999999999999988876 45689999999 6999999999988874 599999999 6554 443 7899999
Q ss_pred Eeccccccc--c---chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLF--Y---ESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~--~---e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+........ + ......+++++.++|||||.++.....
T Consensus 117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 865321111 0 012467789999999999999865433
No 61
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=7.2e-13 Score=110.81 Aligned_cols=97 Identities=26% Similarity=0.311 Sum_probs=61.0
Q ss_pred EEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccccc
Q psy14674 83 LDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160 (519)
Q Consensus 83 LDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l 160 (519)
||||||+|.++..+++. +..+++|+|+| .|++.|+++....+... ...+..+..+.......++||+|++..+.+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999998887776 55599999999 69999999988876543 33444333332211111599999998886666
Q ss_pred ccchhHHHHHHHHhcccCcCeEE
Q psy14674 161 FYESMLDTVLYARDKWLATNGLL 183 (519)
Q Consensus 161 ~~e~~l~~~l~~~~r~LkpgG~l 183 (519)
..+..+++.+.++|||||.+
T Consensus 80 ---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---S-HHHHHHHHTTT-TSS-EE
T ss_pred ---hhHHHHHHHHHHHcCCCCCC
Confidence 56778999999999999986
No 62
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.29 E-value=1.4e-11 Score=124.82 Aligned_cols=100 Identities=20% Similarity=0.164 Sum_probs=80.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++.+|||||||+|.++..+++. +..+|+++|.| +|++.|+++... .+++++.+|+++++++. ++||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~--~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPT--DYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCC--CceeEEEEc
Confidence 45789999999999998888765 55699999999 699999987643 24789999999876665 789999997
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.+.+++ .....+++++.++|||||.++.
T Consensus 186 ~~L~~~---~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 186 GSIEYW---PDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred ChhhhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence 664433 3456789999999999999864
No 63
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.29 E-value=3.1e-11 Score=120.52 Aligned_cols=109 Identities=24% Similarity=0.332 Sum_probs=86.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++. ++||+|++++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~--~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPG--RKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCC--CCccEEEECC
Confidence 4579999999999999999986 34599999999 69999999999999988899999998652 343 5899999986
Q ss_pred cccc----------cccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYC----------LFYE------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~----------l~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
...- ..+| .....++..+.++|+|||.++.+...
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 4110 0111 23466788888999999999977654
No 64
>PRK08317 hypothetical protein; Provisional
Probab=99.29 E-value=3.3e-11 Score=116.86 Aligned_cols=116 Identities=25% Similarity=0.340 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674 66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP 142 (519)
Q Consensus 66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~ 142 (519)
|++.++....+.++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|+++.. ....+++++.+|+.+.+++
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCC
Confidence 4444555567788999999999999999988876 34699999999 69999988733 2334689999999877665
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
. ++||+|++..+.+++ .....++..+.++|||||.++....
T Consensus 85 ~--~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 85 D--GSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred C--CCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 5 789999997764433 3467788999999999999886543
No 65
>PRK14967 putative methyltransferase; Provisional
Probab=99.29 E-value=3.2e-11 Score=116.38 Aligned_cols=108 Identities=26% Similarity=0.278 Sum_probs=84.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
..+.++.+|||+|||+|.++..+++.++.+|+|+|++ .+++.|+++++.+++ +++++.+|+.+. ++. ++||+|+
T Consensus 32 ~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~--~~fD~Vi 106 (223)
T PRK14967 32 EGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEF--RPFDVVV 106 (223)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccC--CCeeEEE
Confidence 3456788999999999999999998877799999999 699999999988876 388999998763 343 7899999
Q ss_pred Eeccccccc------------------cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 153 SEWMGYCLF------------------YESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 153 s~~~~~~l~------------------~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+++...... ....+..++.++.++|||||.++..
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 986421110 0112566788888999999999853
No 66
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.28 E-value=1.6e-11 Score=120.54 Aligned_cols=96 Identities=32% Similarity=0.509 Sum_probs=77.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++++|||+|||+|.+++.+++.|+.+|+|+|+| .+++.|+++++.+++.+++.+..++ .+||+|+++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~----------~~fD~Vvan 186 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD----------LKADVIVAN 186 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------CCcCEEEEc
Confidence 45789999999999999999998888789999999 5999999999998875444433221 269999997
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
... ..+..++..+.++|||||.++...
T Consensus 187 i~~------~~~~~l~~~~~~~LkpgG~lilsg 213 (250)
T PRK00517 187 ILA------NPLLELAPDLARLLKPGGRLILSG 213 (250)
T ss_pred CcH------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 542 234567788889999999999653
No 67
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.27 E-value=3.6e-11 Score=116.78 Aligned_cols=109 Identities=25% Similarity=0.337 Sum_probs=88.4
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
......++.+|||+|||+|.++..+++.+ ..+++++|++ .+++.+++++..++...+++++.+|+.+...+. ++|
T Consensus 45 ~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~ 122 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD--NSF 122 (239)
T ss_pred HHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC--CCc
Confidence 33445577899999999999999998875 4799999999 699999999887777677999999998765543 789
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
|+|++....+ +......++..+.++|+|||.++.
T Consensus 123 D~I~~~~~l~---~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 123 DAVTIAFGLR---NVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred cEEEEecccc---cCCCHHHHHHHHHHhccCCcEEEE
Confidence 9998865533 334577889999999999998874
No 68
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.27 E-value=3.2e-11 Score=117.85 Aligned_cols=109 Identities=28% Similarity=0.213 Sum_probs=80.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
....|++|||||||.|..+..++++|++.|+|+|.+. .....+...+-.|....+..+...+++++. . +.||+|+|
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~--~~FDtVF~ 188 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L--GAFDTVFS 188 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c--CCcCEEEE
Confidence 4568999999999999999999999999999999993 333333222223333334455456666544 2 89999999
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
-.+.||. ...-..+..++..|+|||.+|.++..
T Consensus 189 MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 189 MGVLYHR---RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred eeehhcc---CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 8885554 44556688889999999999988765
No 69
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.27 E-value=2.2e-11 Score=126.66 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=88.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEee--cCCCCceeeEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVE--LPFGIQKVDIII 152 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~~~~~D~Iv 152 (519)
.++++|||+|||+|.+++.++..|+.+|++||+| .+++.|+++++.|++. ++++++++|+.++. +....++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4688999999999999998887788899999999 6999999999999996 57999999998751 211125899999
Q ss_pred Eeccccccccc------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYE------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++........ ..+..++....++|+|||.++..+++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99874322111 12445556677999999999987776
No 70
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.26 E-value=3.3e-11 Score=123.19 Aligned_cols=115 Identities=24% Similarity=0.289 Sum_probs=92.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
++.......++.+|||+|||+|.++..++..|+ +|+|+|++ .|++.|+++++.+++.+ +.++++|+.+++++. ++
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~--~~ 248 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSS--ES 248 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCccc--CC
Confidence 444445667889999999999999988888765 99999999 69999999999999887 899999999876654 78
Q ss_pred eeEEEEeccccc---cc---cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 148 VDIIISEWMGYC---LF---YESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 148 ~D~Ivs~~~~~~---l~---~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
||+|++++.... .. .......++..+.+.|||||+++.-.
T Consensus 249 ~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 249 VDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 999999864211 11 11345778999999999999887443
No 71
>KOG4300|consensus
Probab=99.25 E-value=2.7e-11 Score=110.79 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=81.5
Q ss_pred EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEE-EEEceeeEee-cCCCCceeeEEEEeccc
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT-ILKGKVEEVE-LPFGIQKVDIIISEWMG 157 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~~~~D~Ivs~~~~ 157 (519)
.||+||||||..-.+.--.+..+|+++|++ .|-+.|.+.++++.... ++ |+.++.++++ +++ +++|+||+..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d--~s~DtVV~Tlv- 154 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLAD--GSYDTVVCTLV- 154 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCccccc--CCeeeEEEEEE-
Confidence 589999999987776665556699999999 59999999998885544 66 9999999985 666 89999999776
Q ss_pred cccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 158 YCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
+.........|++..|+|+|||++++
T Consensus 155 --LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 155 --LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred --EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 33445677789999999999998873
No 72
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.25 E-value=6.8e-11 Score=107.89 Aligned_cols=119 Identities=25% Similarity=0.323 Sum_probs=96.2
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674 56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133 (519)
Q Consensus 56 ~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~ 133 (519)
|.+..+|... +....+.+|.+++|||||||.++..++.. +..+|||+|.+ ++++..++|+++.|.+ +++++.
T Consensus 17 ~TK~EIRal~-----ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~ 90 (187)
T COG2242 17 MTKEEIRALT-----LSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVE 90 (187)
T ss_pred CcHHHHHHHH-----HHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEe
Confidence 6666666443 33467889999999999999999999866 47799999999 6999999999999965 599999
Q ss_pred ceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 134 GKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 134 ~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++-+. ++.. .++|.|+...- ..++.+++.+...|||||++|.+..+
T Consensus 91 g~Ap~~-L~~~-~~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 91 GDAPEA-LPDL-PSPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred ccchHh-hcCC-CCCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 999875 3321 37999975432 45778888889999999999988877
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.25 E-value=5.8e-11 Score=114.05 Aligned_cols=110 Identities=25% Similarity=0.331 Sum_probs=86.4
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674 68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG 144 (519)
Q Consensus 68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 144 (519)
..++......++.+|||+|||+|.++..+++.+. .+++++|++ .+++.++++.. ...+++++.+|+.+...+.
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~- 104 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFED- 104 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCC-
Confidence 3444444455789999999999999998888754 489999999 68999888765 3456899999998866544
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
++||+|++.... .+......+++.+.++|+|||.++.
T Consensus 105 -~~~D~i~~~~~~---~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 105 -NSFDAVTIAFGL---RNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred -CcEEEEEEeeee---CCcccHHHHHHHHHHHcCCCcEEEE
Confidence 789999986653 3334577889999999999999884
No 74
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.24 E-value=5.5e-11 Score=122.47 Aligned_cols=134 Identities=22% Similarity=0.210 Sum_probs=97.0
Q ss_pred cccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCc
Q psy14674 51 GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDV 128 (519)
Q Consensus 51 ~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~ 128 (519)
......+.....++.+.+.++.. +.++.+|||+|||+|.+++.+++. +..+|+|+|+| +|++.|+++++.++. +
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~--l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--r 301 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLAR--LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--R 301 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhc--cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 34444555556677777766543 345679999999999999988865 56699999999 699999999998875 5
Q ss_pred EEEEEceeeEeecCCCCceeeEEEEecccccc----------ccc------------hhHHHHHHHHhcccCcCeEEEcc
Q psy14674 129 VTILKGKVEEVELPFGIQKVDIIISEWMGYCL----------FYE------------SMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 129 i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l----------~~e------------~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
++++++|+.+...+. .++||+|+|++..... .+| .....++..+.+.|+|||.++.+
T Consensus 302 V~fi~gDl~e~~l~~-~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 302 VEFAHGSWFDTDMPS-EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred EEEEEcchhcccccc-CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999999987643332 1579999998852110 001 23456777778899999998865
Q ss_pred CCc
Q psy14674 187 KAS 189 (519)
Q Consensus 187 ~~~ 189 (519)
...
T Consensus 381 iG~ 383 (423)
T PRK14966 381 HGF 383 (423)
T ss_pred ECc
Confidence 544
No 75
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.23 E-value=7e-11 Score=119.15 Aligned_cols=107 Identities=21% Similarity=0.339 Sum_probs=85.2
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674 80 KIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~ 157 (519)
.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.+++.++++++++|+.+. ++. ++||+|++++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~--~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPG--RRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCC--CCccEEEECCCC
Confidence 68999999999999998876 45699999999 69999999999999988899999998652 343 689999998631
Q ss_pred cc----------cccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 158 YC----------LFYE------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 158 ~~----------l~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.. ..++ .....++..+.++|+|||.++.+...
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 10 0111 23467788888999999999976554
No 76
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.23 E-value=3.9e-11 Score=113.22 Aligned_cols=109 Identities=22% Similarity=0.271 Sum_probs=84.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee---cCCCCceeeEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE---LPFGIQKVDIII 152 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~D~Iv 152 (519)
.+.+|||||||+|.++..+++. +..+|+|+|++ +|++.|++++...++. +++++++|+.++. ++. +.+|.|+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~--~~~d~v~ 92 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPD--GSLSKVF 92 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCC--CceeEEE
Confidence 4569999999999999888876 55699999999 6999999999988886 5999999998653 333 5899999
Q ss_pred Eecccccccc-----chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFY-----ESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~-----e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++........ .-....++..+.++|||||.++.....
T Consensus 93 ~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 93 LNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred EECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 8754221111 111256788999999999999865544
No 77
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.23 E-value=4.8e-11 Score=119.42 Aligned_cols=107 Identities=28% Similarity=0.406 Sum_probs=86.0
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674 80 KIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~ 157 (519)
.+|||+|||+|.+++.+++.. ..+|+|+|+| ++++.|+++++.+++.++++++++|+.+ .++. .+||+|+|++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~--~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAG--QKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcC--CCccEEEECCCC
Confidence 699999999999999998863 4599999999 6999999999999998789999999876 3442 489999997531
Q ss_pred c----------ccccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 158 Y----------CLFYE------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 158 ~----------~l~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
. ...++ .....++....++|+|||.++.+...
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1 01111 24567888888999999999987766
No 78
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=6.5e-11 Score=115.96 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=85.9
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
.++++.....+.+|||+|||.|.+++.+++. +..+++-+|.+ .+++.|+++++.|++.+. .++..|..+ +.. +
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~-~v~---~ 223 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYE-PVE---G 223 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccc-ccc---c
Confidence 3444555555569999999999999999988 56799999999 699999999999999864 667766654 333 5
Q ss_pred eeeEEEEeccccccccc--hhHHHHHHHHhcccCcCeEEE
Q psy14674 147 KVDIIISEWMGYCLFYE--SMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e--~~l~~~l~~~~r~LkpgG~li 184 (519)
+||+|||++..|--... ..-+.++.+..+.|++||.+.
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~ 263 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELW 263 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEE
Confidence 89999999985532211 123478888899999999764
No 79
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.23 E-value=8.4e-11 Score=113.13 Aligned_cols=105 Identities=25% Similarity=0.277 Sum_probs=84.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++.+|||+|||+|.++..+++.+. +|+|+|+| +|++.|+++...++..+++++.++|+.+.+ ++||+|++.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ii~~ 126 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDIVVCM 126 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCEEEEh
Confidence 56789999999999999999998865 99999999 699999999988887667999999988643 579999986
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.+.+++. ...+..++..+.+++++++++....
T Consensus 127 ~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 127 DVLIHYP-ASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred hHHHhCC-HHHHHHHHHHHHHHhCCCEEEEECC
Confidence 5544332 2346677888888888887766443
No 80
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.23 E-value=1.5e-11 Score=110.51 Aligned_cols=134 Identities=23% Similarity=0.371 Sum_probs=110.8
Q ss_pred cccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcE
Q psy14674 51 GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVV 129 (519)
Q Consensus 51 ~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i 129 (519)
.+|-..+.|..|-..|..+|.+... ..+.|+|+|+|++++.+|++ +.+|+|+|.++ ..++|.+++.-+|..+ +
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n-~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVN-W 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcc-e
Confidence 4677889999999999999965432 68999999999999999998 88999999995 8999999988778754 9
Q ss_pred EEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674 130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195 (519)
Q Consensus 130 ~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i 195 (519)
+++.+|+.+..+ +..|+|+|+.+...+..|...+ ++.++..+||-++.++|.....-+.++
T Consensus 83 evv~gDA~~y~f----e~ADvvicEmlDTaLi~E~qVp-V~n~vleFLr~d~tiiPq~v~~~a~pv 143 (252)
T COG4076 83 EVVVGDARDYDF----ENADVVICEMLDTALIEEKQVP-VINAVLEFLRYDPTIIPQEVRIGANPV 143 (252)
T ss_pred EEEecccccccc----cccceeHHHHhhHHhhcccccH-HHHHHHHHhhcCCccccHHHhhccCcc
Confidence 999999998766 4689999999888787776554 456666799999999999877433333
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.22 E-value=8.5e-11 Score=120.06 Aligned_cols=103 Identities=23% Similarity=0.249 Sum_probs=81.9
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
...+|||+|||+|.++..+++. +..+|+++|+| .|++.|+++++.+++. .+++.+|+.+. .+ ++||+|+|++
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~---~~fDlIvsNP 269 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IK---GRFDMIISNP 269 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cC---CCccEEEECC
Confidence 3458999999999999999887 44589999999 6999999999999875 46777777542 33 7899999998
Q ss_pred ccccccc--chhHHHHHHHHhcccCcCeEEEcc
Q psy14674 156 MGYCLFY--ESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 156 ~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
..|.... ....+.++..+.+.|||||.++.-
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 7553221 234678899999999999988643
No 82
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.21 E-value=3.6e-11 Score=109.20 Aligned_cols=97 Identities=30% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++++|||||||+|.++..+++.|. +|+|+|++ .+++. .++.....+......+. ++||+|+|.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~--~~fD~i~~~ 85 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPD--GSFDLIICN 85 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHS--SSEEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccc--cchhhHhhH
Confidence 67889999999999999999999888 99999999 57776 11233332222323343 899999998
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+.+++. ....++..+.++|||||+++.....
T Consensus 86 ~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 86 DVLEHLP---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp SSGGGSS---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred HHHhhcc---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 8866554 5788999999999999999976654
No 83
>KOG1271|consensus
Probab=99.21 E-value=6.4e-11 Score=106.18 Aligned_cols=112 Identities=21% Similarity=0.328 Sum_probs=87.5
Q ss_pred CCCCC-EEEEECCcccHHHHHHHHcCCCE-EEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 76 LFKGK-IVLDIGCGTGILSMFAAKSGAAR-VIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 76 ~~~~~-~VLDiGcGtG~ls~~la~~g~~~-V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
+.+.. +|||+|||.|.+...+++.|... .+|+|.| .+++.|+..++++++++.|+|.+.|+.+-.... ++||+|.
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~--~qfdlvl 141 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLS--GQFDLVL 141 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccc--cceeEEe
Confidence 34444 99999999999999999987544 9999999 599999999999999999999999998753333 7888887
Q ss_pred Eec----ccccc-ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEW----MGYCL-FYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~----~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
--. +.-+. .....+...+..+.++|+|||+++..+|+
T Consensus 142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 522 21111 11223345677788999999999999998
No 84
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.21 E-value=1.2e-10 Score=117.82 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=92.2
Q ss_pred HHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 68 NSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 68 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
+.+.....+.++.+|||||||+|.++..++++ +..+++++|..++++.|+++++..++.++++++.+|+.+..++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~---- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP---- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC----
Confidence 34545556677889999999999999988887 4568999998789999999999999999999999999765444
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
.+|+|+...+.|.. .+.....+++.+.+.|+|||+++....
T Consensus 215 ~~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 EADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred CCCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 36998776554433 233456789999999999999985543
No 85
>PRK05785 hypothetical protein; Provisional
Probab=99.21 E-value=5e-11 Score=115.15 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=73.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
++.+|||||||||.++..+++....+|+|+|+| +|++.|++. ..++++|++++++++ ++||+|++...
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d--~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRD--KSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCC--CCEEEEEecCh
Confidence 478999999999999999988733499999999 699998863 135788998877766 89999999765
Q ss_pred ccccccchhHHHHHHHHhcccCcCe
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNG 181 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG 181 (519)
.+ +-..++.+++++.|+|||.+
T Consensus 120 l~---~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 120 LH---ASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hh---ccCCHHHHHHHHHHHhcCce
Confidence 33 34567888999999999954
No 86
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.21 E-value=9.8e-11 Score=113.71 Aligned_cols=107 Identities=29% Similarity=0.325 Sum_probs=84.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
....++.+|||||||+|.++..+++.+. +|+++|++ .+++.|++++...+. .++++.+++.++... ..++||+|+
T Consensus 44 ~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~fD~Ii 119 (233)
T PRK05134 44 AGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-HPGQFDVVT 119 (233)
T ss_pred ccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-cCCCccEEE
Confidence 3456788999999999999999988865 89999999 699999998877665 378888888765311 127899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+..+.+ +......++..+.++|+|||.++...
T Consensus 120 ~~~~l~---~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 120 CMEMLE---HVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred EhhHhh---ccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 866533 33456778899999999999998654
No 87
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.20 E-value=1.5e-10 Score=111.65 Aligned_cols=139 Identities=27% Similarity=0.327 Sum_probs=100.6
Q ss_pred hhhhccccccccHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHH
Q psy14674 42 YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIV 120 (519)
Q Consensus 42 ~yf~~y~~~~~~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~ 120 (519)
.|.+.++.+.....+ +..+.....+.+.......++.+|||+|||+|.++..+++.+. +++++|++ .+++.+++++
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 11 EWWDPNGKFKPLHKM--NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHA 87 (224)
T ss_pred HhcCCCCcHHHHHHh--hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence 355556655444443 3445555555564432234688999999999999998888766 79999999 6999999998
Q ss_pred HHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 121 DKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 121 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
..++.. ++++..+++.++.... .++||+|++..+.+ +......++..+.+.|+|||.++....
T Consensus 88 ~~~~~~-~~~~~~~d~~~~~~~~-~~~~D~i~~~~~l~---~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 88 KKDPLL-KIEYRCTSVEDLAEKG-AKSFDVVTCMEVLE---HVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred HHcCCC-ceEEEeCCHHHhhcCC-CCCccEEEehhHHH---hCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 877653 4888888887764331 26899999866533 334567788999999999999886543
No 88
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.20 E-value=1.6e-10 Score=109.30 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=83.0
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
.......++.+|||+|||+|.++..+++. +..+|+|+|++ ++++.|+++++.+++. +++++.+|+.+. ++.....+
T Consensus 33 ~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~-~~~~~~~~ 110 (196)
T PRK07402 33 ISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC-LAQLAPAP 110 (196)
T ss_pred HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH-HhhCCCCC
Confidence 33445678899999999999999988865 45699999999 6999999999998885 599999998652 11101345
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|.++... ...+..++..+.++|+|||.++.....
T Consensus 111 d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 111 DRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 7665432 123567788888999999999876554
No 89
>PLN03075 nicotianamine synthase; Provisional
Probab=99.20 E-value=1.9e-10 Score=113.83 Aligned_cols=108 Identities=18% Similarity=0.176 Sum_probs=84.3
Q ss_pred CCCEEEEECCcccHH-HHHHH-Hc-CCCEEEEEech-HHHHHHHHHHHH-CCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 78 KGKIVLDIGCGTGIL-SMFAA-KS-GAARVIGIECS-NIVEYAKEIVDK-NNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 78 ~~~~VLDiGcGtG~l-s~~la-~~-g~~~V~gvD~s-~~~~~A~~~~~~-~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
++++|+|||||.|.+ ++.++ ++ +..+++|+|.+ ++++.|++.++. .++.++++|..+|+.+..... ++||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l--~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL--KEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc--CCcCEEE
Confidence 789999999997744 44443 33 56689999999 699999999964 889899999999998753222 6899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+..+ ++.. ......+++.+.+.|+|||.++...+.
T Consensus 201 ~~AL-i~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 201 LAAL-VGMD-KEEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred Eecc-cccc-cccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 9843 2222 145788899999999999999977654
No 90
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=5.3e-11 Score=132.95 Aligned_cols=112 Identities=20% Similarity=0.184 Sum_probs=90.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++++|||+|||+|.+++.+++.|+++|++||+| .+++.|+++++.|++. ++++++++|+.++.... .++||+||++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-REQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-CCCcCEEEEC
Confidence 4688999999999999999999998899999999 6999999999999997 68999999987642111 1689999998
Q ss_pred cccccc--------ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 155 WMGYCL--------FYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 155 ~~~~~l--------~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+..... ........++..+.++|+|||.++.+.+.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 753211 11234566777888999999999877655
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.20 E-value=1.6e-10 Score=110.65 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=80.7
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149 (519)
Q Consensus 71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D 149 (519)
+....+.++.+|||+|||+|.++..+++.+ .+|+++|.+ ++++.|+++++.+++.+ ++++.+|..+...+. ++||
T Consensus 71 ~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~--~~fD 146 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAY--APFD 146 (212)
T ss_pred HHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcC--CCcC
Confidence 334566788999999999999999888875 489999999 69999999999988865 999999986532222 6899
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+|++..... .+...+.+.|+|||.++...
T Consensus 147 ~I~~~~~~~---------~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 147 RILVTAAAP---------EIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred EEEEccCch---------hhhHHHHHhcCCCcEEEEEE
Confidence 999865321 22344568999999988543
No 92
>PRK04266 fibrillarin; Provisional
Probab=99.20 E-value=1.2e-10 Score=112.12 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=78.5
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe----ecCCCCc
Q psy14674 73 NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV----ELPFGIQ 146 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~~ 146 (519)
...+.++.+|||+|||+|.++..+++. +..+|+|+|++ +|++.+.++++.. .++.++.+|+.+. .++ +
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~---~ 140 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVV---E 140 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhcc---c
Confidence 356788999999999999999999886 44589999999 6999887776653 3488999998652 122 5
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+||+|+++.. .......++..+.++|||||.++..
T Consensus 141 ~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 6999997632 1112344678889999999998864
No 93
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.20 E-value=1.4e-10 Score=110.81 Aligned_cols=104 Identities=22% Similarity=0.156 Sum_probs=80.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--------------CCcEEEEEceeeEeec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--------------SDVVTILKGKVEEVEL 141 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--------------~~~i~~~~~d~~~~~~ 141 (519)
.++.+|||+|||.|..+.++|++|. +|+|+|+| .+++.|.+. +++ ..+|+++++|+.++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 4678999999999999999999988 89999999 588875432 222 2358999999988653
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.. .++||.|+...+.+++ .......++..+.++|||||.++..
T Consensus 109 ~~-~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 109 AD-LGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cc-CCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 21 1579999886655555 3456778899999999999976543
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=99.19 E-value=1.5e-10 Score=108.24 Aligned_cols=107 Identities=27% Similarity=0.383 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++++|||+|||+|.++..+++.+ .+|+|+|.| ++++.+++++..+++.++ +.++++|+.+. ++. ++||+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRG--DKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccc--cCceEEEEC
Confidence 577899999999999999999885 599999999 699999999998888655 88999988763 333 589999987
Q ss_pred cccccc------------------ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCL------------------FYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l------------------~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
...... .....+..+++++.++|||||.++...
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 642210 011235667889999999999887543
No 95
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=6.8e-11 Score=110.25 Aligned_cols=105 Identities=23% Similarity=0.213 Sum_probs=83.9
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149 (519)
Q Consensus 71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D 149 (519)
.+...+.++.+|||||||+|+.+..+|+... +|+++|.. ++++.|+++++..|+.+ |.++++|...--.+. .+||
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~--aPyD 140 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEE--APYD 140 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCC--CCcC
Confidence 3446788999999999999999999999844 99999999 69999999999999987 999999988743333 7899
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
.|+...... ...+.+ .+.||+||+++.-..
T Consensus 141 ~I~Vtaaa~-----~vP~~L----l~QL~~gGrlv~PvG 170 (209)
T COG2518 141 RIIVTAAAP-----EVPEAL----LDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEEeeccC-----CCCHHH----HHhcccCCEEEEEEc
Confidence 998865422 123333 368899999984443
No 96
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1.1e-10 Score=116.13 Aligned_cols=129 Identities=25% Similarity=0.308 Sum_probs=91.8
Q ss_pred HhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEE
Q psy14674 55 EMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132 (519)
Q Consensus 55 ~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~ 132 (519)
..+.....++.+...++........ +|||+|||||.+++.++... ...|+|+|+| .+++.|++|+..+++ .++.++
T Consensus 88 ~vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~ 165 (280)
T COG2890 88 GVLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVV 165 (280)
T ss_pred CceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEE
Confidence 3344444556555554321111122 89999999999999999884 4599999999 699999999999999 557777
Q ss_pred EceeeEeecCCCCceeeEEEEeccc--cc---c-----ccc------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 133 KGKVEEVELPFGIQKVDIIISEWMG--YC---L-----FYE------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 133 ~~d~~~~~~~~~~~~~D~Ivs~~~~--~~---l-----~~e------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++|+.+ .+. ++||+||||+.. .- . .+| .....++..+.+.|+|||.++.....
T Consensus 166 ~~dlf~-~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 166 QSDLFE-PLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred eeeccc-ccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 776654 344 689999998741 00 0 011 24567788888999999999877764
No 97
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.18 E-value=1.3e-10 Score=112.90 Aligned_cols=101 Identities=30% Similarity=0.364 Sum_probs=82.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++.+|||+|||+|.++..+++.+ ..+++++|++ ++++.+++... .++.++.+|+.+.+++. ++||+|++.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~--~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLED--SSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCC--CceeEEEEh
Confidence 456799999999999999888874 4579999999 68888887654 25889999999876655 789999998
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.+.++. .....++..+.++|+|||.++...
T Consensus 106 ~~l~~~---~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWC---DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhc---cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 774443 456778999999999999998654
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.18 E-value=9.1e-11 Score=126.08 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=98.4
Q ss_pred ccccHHhhhcHHHHHHHHHHHHhcCC------------------------CCCCCEEEEECCcccHHHHHHHHc-CCCEE
Q psy14674 50 FGIHEEMLKDEVRTMTYRNSMYHNKH------------------------LFKGKIVLDIGCGTGILSMFAAKS-GAARV 104 (519)
Q Consensus 50 ~~~~~~~l~d~~r~~~y~~ai~~~~~------------------------~~~~~~VLDiGcGtG~ls~~la~~-g~~~V 104 (519)
+......|-.+..++...+.++.... ..++.+|||+|||+|.+++.+++. +..+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 34455556666667766665543211 113568999999999999988765 55699
Q ss_pred EEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccc-----------cccc---------
Q psy14674 105 IGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC-----------LFYE--------- 163 (519)
Q Consensus 105 ~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~-----------l~~e--------- 163 (519)
+|+|+| .+++.|+++++.+++.++++++++|+.+. ++. ++||+|+|++.... ..+|
T Consensus 166 ~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~--~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~ 242 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEK--QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEE 242 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcC--CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCc
Confidence 999999 69999999999999888899999998652 333 68999999763111 0111
Q ss_pred ---hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 164 ---SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 164 ---~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
..+..++..+.++|+|||.++.+...
T Consensus 243 dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 243 DGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 22445777888999999999876543
No 99
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=1.2e-10 Score=125.10 Aligned_cols=110 Identities=24% Similarity=0.385 Sum_probs=85.6
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCcee
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKV 148 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~ 148 (519)
......++.+|||||||+|.++..+++.+ .+|+|+|++ +|++.+++. ++...+++++++|+... +++. ++|
T Consensus 31 ~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~--~~f 104 (475)
T PLN02336 31 SLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISD--GSV 104 (475)
T ss_pred hhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCC--CCE
Confidence 33444567899999999999999999885 599999999 698877653 23334689999999643 4444 789
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
|+|++..+.+++.. ..+..+++.+.++|||||.++....
T Consensus 105 D~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 105 DLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred EEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEec
Confidence 99999888666644 3467889999999999999987543
No 100
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.17 E-value=1.2e-10 Score=110.59 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=74.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
.+.++.+|||||||+|.++..+++. +..+++|+|+| +|++.|+++.. ++.++++|+.+ +.+. ++||+|+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~~~~--~sfD~V~ 110 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-PFKD--NFFDLVL 110 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-CCCC--CCEEEEE
Confidence 3457789999999999999988876 55699999999 69999987642 26788888877 4554 7999999
Q ss_pred EeccccccccchhHHHHHHHHhccc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWL 177 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~L 177 (519)
+..+.+++. ...+..+++++.|++
T Consensus 111 ~~~vL~hl~-p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 111 TKGVLIHIN-PDNLPTAYRELYRCS 134 (204)
T ss_pred ECChhhhCC-HHHHHHHHHHHHhhc
Confidence 988766664 346777888888887
No 101
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.16 E-value=1.1e-10 Score=113.22 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=87.6
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCC--CCce
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPF--GIQK 147 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~--~~~~ 147 (519)
...++++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++.+|+.++|+++.+|+.+. .+.. ..++
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~ 144 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE 144 (234)
T ss_pred HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence 4457889999999999988877765 46799999999 69999999999999999999999999774 1110 0268
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL 190 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 190 (519)
||+|+.+.. ......++..+.++|+|||.++.+..-|
T Consensus 145 fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 145 FDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 999988643 1334566777789999999999887663
No 102
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.16 E-value=2.3e-10 Score=107.93 Aligned_cols=107 Identities=14% Similarity=0.158 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++.+|||+|||+|.+++.++..++.+|+++|.+ ++++.|+++++.+++. +++++++|+.+. ++...++||+|++++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~-l~~~~~~fDlV~~DP 129 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSF-LAQPGTPHNVVFVDP 129 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHH-HhhcCCCceEEEECC
Confidence 4678999999999999997655667899999999 6999999999999875 599999998764 221115799999998
Q ss_pred cccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~ 189 (519)
... .+..+.++..+. .+|+|+|+++.+...
T Consensus 130 Py~----~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 130 PFR----KGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC----CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 722 233444455443 458899988877554
No 103
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.16 E-value=1.2e-10 Score=115.06 Aligned_cols=111 Identities=18% Similarity=0.230 Sum_probs=82.9
Q ss_pred CCCCCEEEEECCcccH----HHHHHHHcC------CCEEEEEech-HHHHHHHHHHH----HCC----------------
Q psy14674 76 LFKGKIVLDIGCGTGI----LSMFAAKSG------AARVIGIECS-NIVEYAKEIVD----KNN---------------- 124 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~----ls~~la~~g------~~~V~gvD~s-~~~~~A~~~~~----~~~---------------- 124 (519)
..++.+|||+|||||. +++.+++.+ ..+|+|+|+| .|++.|++.+- ..+
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999995 566666642 2489999999 69999998531 011
Q ss_pred ------CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 125 ------LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 125 ------~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.++|+|.++|+.+.+.+. ++||+|+|..+.+++.. .....++..+.+.|+|||.++.....
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~--~~fD~I~crnvl~yf~~-~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPL--GDFDLIFCRNVLIYFDE-PTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCcc--CCCCEEEechhHHhCCH-HHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 2246899999998865544 79999999766555533 45678899999999999999976555
No 104
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.6e-10 Score=107.69 Aligned_cols=110 Identities=23% Similarity=0.254 Sum_probs=94.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 145 (519)
.|.....+.+|.+|||.|.|+|.++..+|++ +.++|+..|+. +.++.|++|++..++.+++++..+|+.+...+
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--- 161 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--- 161 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc---
Confidence 3445578899999999999999999999986 45799999999 69999999999999999999999999987655
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.||+|+.+.. ....++..+.+.|+|||.++.-..+
T Consensus 162 ~~vDav~LDmp--------~PW~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 162 EDVDAVFLDLP--------DPWNVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred cccCEEEEcCC--------ChHHHHHHHHHHhCCCcEEEEEcCC
Confidence 58999987653 4567788889999999998855444
No 105
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.14 E-value=5.4e-10 Score=109.58 Aligned_cols=106 Identities=26% Similarity=0.304 Sum_probs=83.0
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+.+|||+|||+|.++..+++. +..+++|+|++ .+++.|++++..+++. +++++++|+.+ .++. ++||+|++++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~--~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PLPG--GKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cCcC--CceeEEEECC
Confidence 4569999999999999998886 45599999999 6999999999998886 59999999976 3443 7899999976
Q ss_pred cccccc-----------cc------------hhHHHHHHHHhcccCcCeEEEccC
Q psy14674 156 MGYCLF-----------YE------------SMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 156 ~~~~l~-----------~e------------~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
...... ++ .....++..+.++|+|||.++...
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 522110 00 112467788899999999998654
No 106
>PRK06202 hypothetical protein; Provisional
Probab=99.13 E-value=2.3e-10 Score=111.06 Aligned_cols=101 Identities=22% Similarity=0.230 Sum_probs=75.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc----C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS----G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D 149 (519)
..++.+|||||||+|.++..+++. | ..+|+|+|+| +|++.|+++...++ +++...+...++.+. ++||
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~~~--~~fD 131 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVAEG--ERFD 131 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccccC--CCcc
Confidence 356789999999999988887752 3 2489999999 69999988765433 566666666554443 7999
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+++.+.+++..+ .+..++.++.++++ ++.++
T Consensus 132 ~V~~~~~lhh~~d~-~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 132 VVTSNHFLHHLDDA-EVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred EEEECCeeecCChH-HHHHHHHHHHHhcC-eeEEE
Confidence 99998877766543 35678899999988 44444
No 107
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.13 E-value=4.6e-10 Score=107.59 Aligned_cols=103 Identities=24% Similarity=0.232 Sum_probs=79.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--------------CCcEEEEEceeeEee
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--------------SDVVTILKGKVEEVE 140 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--------------~~~i~~~~~d~~~~~ 140 (519)
..++.+|||+|||.|..+.++|++|. +|+|||+| .+++.+.+ ++++ ..+|++.++|+.++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 35678999999999999999999988 89999999 57877642 2332 246899999998864
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
... .+.||.|+...+.+++. .+....++..+.++|+|||.++
T Consensus 111 ~~~-~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AAD-LADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccc-CCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence 321 25799999877655553 4567888999999999998643
No 108
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.12 E-value=3.2e-10 Score=112.90 Aligned_cols=125 Identities=22% Similarity=0.227 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceee
Q psy14674 60 EVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137 (519)
Q Consensus 60 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~ 137 (519)
...++.+.+.++......++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++ ++...++.++.+|+.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 3345555555554444567789999999999999998887 35699999999 69999999988 444557999999986
Q ss_pred EeecCCCCceeeEEEEecccccc------c-----------------cchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 138 EVELPFGIQKVDIIISEWMGYCL------F-----------------YESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 138 ~~~~~~~~~~~D~Ivs~~~~~~l------~-----------------~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
+. ++. ++||+|++++..... . .......++..+.++|+|||.++....
T Consensus 169 ~~-~~~--~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 169 EP-LPG--GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred Cc-CCC--CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 53 232 689999997642110 0 112345677788899999999987543
No 109
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.11 E-value=1.7e-10 Score=109.47 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=76.4
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 145 (519)
.+++...+.+|.+|||||||+|+.+..+++. | ..+|++||.. ++++.|+++++..++. +|+++++|........
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~~~-- 139 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWPEE-- 139 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTGGG--
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccccC--
Confidence 3445567899999999999999999999887 4 3379999999 6999999999998886 4999999986532222
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.+||.|++.... . ..... +.+.|++||+++.
T Consensus 140 apfD~I~v~~a~---~--~ip~~----l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 140 APFDRIIVTAAV---P--EIPEA----LLEQLKPGGRLVA 170 (209)
T ss_dssp -SEEEEEESSBB---S--S--HH----HHHTEEEEEEEEE
T ss_pred CCcCEEEEeecc---c--hHHHH----HHHhcCCCcEEEE
Confidence 689999986542 1 22233 3468999999984
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.11 E-value=8.3e-10 Score=108.31 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|+++++.++ ++++++|+.+.......++||+|++++
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECC
Confidence 3458999999999999988865 44589999999 69999999998876 378889987531110115799999987
Q ss_pred ccccc------c-----c------------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCL------F-----Y------------ESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l------~-----~------------e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
...-. . + ...+..++....++|+|||.++.....
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 52210 0 1 112457788888999999999866543
No 111
>PHA03412 putative methyltransferase; Provisional
Probab=99.11 E-value=2.5e-10 Score=108.78 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=78.6
Q ss_pred CCCEEEEECCcccHHHHHHHHc----CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS----GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~----g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
.+.+|||+|||+|.+++.+++. +..+|+|+|++ .+++.|+++.. ++.++.+|+....+. ++||+||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~---~~FDlII 119 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFD---TLFDMAI 119 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccccc---CCccEEE
Confidence 3679999999999999988864 34589999999 69999997753 278999999865543 6899999
Q ss_pred Eeccccccccc---------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYE---------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e---------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++...-+... .....++....+++++|+.++|...-
T Consensus 120 sNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 120 SNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred ECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 99864322111 22455777777899999998888755
No 112
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.11 E-value=1.1e-10 Score=107.76 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=84.7
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D 149 (519)
....+....+|.|+|||+|..+..++++ +...++|+|.| +|++.|+++..+ .+|..+|+.++..+ .+.|
T Consensus 24 a~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------~~f~~aDl~~w~p~---~~~d 94 (257)
T COG4106 24 ARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------ATFEEADLRTWKPE---QPTD 94 (257)
T ss_pred hhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------CceecccHhhcCCC---Cccc
Confidence 3456677789999999999999988887 66799999999 799999876432 79999999998655 7899
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++++.+.+.+.. -..++..+-..|.|||.+......
T Consensus 95 llfaNAvlqWlpd---H~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 95 LLFANAVLQWLPD---HPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhhhhhhccc---cHHHHHHHHHhhCCCceEEEECCC
Confidence 9999998665543 344566666889999999855544
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.10 E-value=3.4e-10 Score=108.02 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=73.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
+.++.+|||||||+|.++..+++. + ..+|+|||+++|. +..+ ++++++|+.+.. ++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~~-v~~i~~D~~~~~~~~~i~~~~~~-- 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIVG-VDFLQGDFRDELVLKALLERVGD-- 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCCC-cEEEecCCCChHHHHHHHHHhCC--
Confidence 567889999999999999988886 3 3589999999842 2233 899999998753 333
Q ss_pred ceeeEEEEeccccccccc--------hhHHHHHHHHhcccCcCeEEEcc
Q psy14674 146 QKVDIIISEWMGYCLFYE--------SMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e--------~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
++||+|+|+...+..... .....++..+.++|||||.++..
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 789999997653332211 01246788899999999999864
No 114
>PRK04457 spermidine synthase; Provisional
Probab=99.10 E-value=3.7e-10 Score=111.46 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++++|||||||+|.++..+++. +..+|++||++ ++++.|++.+...+..++++++.+|+.++- ....++||+|+++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l-~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI-AVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH-HhCCCCCCEEEEe
Confidence 45689999999999999988765 56699999999 699999998876665568999999987641 1112689999997
Q ss_pred ccccc-cccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 155 WMGYC-LFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 155 ~~~~~-l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
..... ....-....+++.+.+.|+|||+++.+.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 64221 1111123677888999999999999754
No 115
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.10 E-value=5.5e-10 Score=114.45 Aligned_cols=110 Identities=23% Similarity=0.243 Sum_probs=85.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIII 152 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Iv 152 (519)
..+..+||||||+|..+..+|+. +...++|+|++ ++++.|.+++..+++.+ +.++++|+..+ .++. +++|.|+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~--~s~D~I~ 197 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPS--NSVEKIF 197 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCC--CceeEEE
Confidence 45679999999999999988876 55699999999 79999999999999876 99999999765 3444 8999998
Q ss_pred Eeccccccccc---hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYE---SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e---~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.......-.. -....++.++.|+|+|||.+...+-.
T Consensus 198 lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 198 VHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred EeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 86532211100 01257899999999999988865433
No 116
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=7.8e-10 Score=103.72 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-e-cCCCCceeeEEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-E-LPFGIQKVDIIIS 153 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~~~~D~Ivs 153 (519)
..+.+|||++||+|.+++.++.+|+++|++||.+ .+++.++++++.+++.++++++.+|+.+. . +......+|+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4688999999999999999999999999999999 69999999999999987899999999653 1 2111124899988
Q ss_pred eccccccccchhHHHHHHHH--hcccCcCeEEEccCCc
Q psy14674 154 EWMGYCLFYESMLDTVLYAR--DKWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~--~r~LkpgG~lip~~~~ 189 (519)
++.... .....++..+ ..+|+++|+++.+...
T Consensus 128 DPPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CcCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 876332 2233333333 3589999999977655
No 117
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.08 E-value=2.7e-10 Score=113.34 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=70.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-C---CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS-G---AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~-g---~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
.++.+|||+|||+|.++..+++. + ...|+|+|+| +|++.|+++. .++.+..+|+.++++++ ++||+|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~--~sfD~I 155 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFAD--QSLDAI 155 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcC--CceeEE
Confidence 35578999999999998888765 2 2379999999 6999987653 23789999998877665 799999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
++... . ..+.++.|+|||||.++.
T Consensus 156 ~~~~~------~----~~~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 156 IRIYA------P----CKAEELARVVKPGGIVIT 179 (272)
T ss_pred EEecC------C----CCHHHHHhhccCCCEEEE
Confidence 98432 1 124667899999999984
No 118
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.08 E-value=8.7e-10 Score=106.67 Aligned_cols=102 Identities=24% Similarity=0.297 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++.+|||||||+|.++..+++.+. +|+|+|+| +|++.|+++....+..+++.+..+|+.. .. ++||+|++.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~--~~fD~v~~~ 134 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LL--GRFDTVVCL 134 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---cc--CCcCEEEEc
Confidence 45678999999999999999998876 79999999 6999999999888876779999998532 22 789999986
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
.+.+++. ...+..++..+.+.+++++++.
T Consensus 135 ~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 135 DVLIHYP-QEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred chhhcCC-HHHHHHHHHHHHhhcCCeEEEE
Confidence 6543332 2346677788877766555444
No 119
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.1e-09 Score=99.76 Aligned_cols=76 Identities=33% Similarity=0.479 Sum_probs=67.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
.....|++|+|+|||||.+++.++-.|+.+|+|+|++ ++++.+++|+.+ +..++.++.+|+.++. .++|.++
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----~~~dtvi 113 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----GKFDTVI 113 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----CccceEE
Confidence 5667899999999999999999999999999999999 799999999998 4456999999999764 5689998
Q ss_pred Eecc
Q psy14674 153 SEWM 156 (519)
Q Consensus 153 s~~~ 156 (519)
.|+.
T Consensus 114 mNPP 117 (198)
T COG2263 114 MNPP 117 (198)
T ss_pred ECCC
Confidence 8874
No 120
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.08 E-value=8e-10 Score=109.36 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=88.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
....+|.+|||+|||+|..+..+++. +...|+|+|++ .+++.++++++.+++.+ ++++++|+..+.... ++||+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~--~~fD~ 143 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAV--PKFDA 143 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhc--cCCCE
Confidence 34568899999999999999988775 24589999999 69999999999999864 999999987654333 57999
Q ss_pred EEEecccccc----c--------cch-------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWMGYCL----F--------YES-------MLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~~~~l----~--------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+++..-... . .+. ....++..+.++|||||+++-+.++
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9987642211 0 111 2245788888999999999988888
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.08 E-value=1e-09 Score=110.90 Aligned_cols=103 Identities=27% Similarity=0.249 Sum_probs=78.6
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
+...+.++.+|||||||+|.++..+++. + ..+|+|+|.+ ++++.|+++++.++.. ++.++++|+.+..... ++|
T Consensus 74 ~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~~--~~f 150 (322)
T PRK13943 74 EWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPEF--APY 150 (322)
T ss_pred HhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhccccc--CCc
Confidence 3345678899999999999999998876 3 2479999999 6999999999999885 5899999987643333 679
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
|+|++... . ..+...+.+.|+|||.++..
T Consensus 151 D~Ii~~~g---~------~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 151 DVIFVTVG---V------DEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEECCc---h------HHhHHHHHHhcCCCCEEEEE
Confidence 99998532 1 11223445789999987743
No 122
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=9.6e-10 Score=116.50 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=89.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--CCCCcee
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--PFGIQKV 148 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~ 148 (519)
....+|.+|||+|||+|..+..+++. +.++|+|+|++ .+++.++++++.+|+.+ |+++++|+.++.. +...++|
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccC
Confidence 35577899999999999999988876 34599999999 69999999999999875 9999999987641 1112689
Q ss_pred eEEEEecccccc----ccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 149 DIIISEWMGYCL----FYE---------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 149 D~Ivs~~~~~~l----~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|.|+++..-... .+. .....++.++.++|||||.++-++|+
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999986542111 111 11356788889999999999988888
No 123
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.3e-09 Score=115.34 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=87.4
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
....+|.+|||+|||+|..+..+++.+ ..+|+|+|++ .+++.++++++.+|+. ++++++|+.++......++||.|
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~V 317 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRI 317 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEE
Confidence 355788999999999999999888874 3599999999 6999999999998875 68999999865311112679999
Q ss_pred EEecccccc------------ccc-------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYCL------------FYE-------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~l------------~~e-------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++...... ..+ .....++..+.++|||||.++...|+
T Consensus 318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 986642211 011 11346788888999999999988887
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.3e-09 Score=115.96 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=88.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
....+|.+|||+|||+|..+..+++. +..+|+|+|+| .+++.++++++..|+. +|+++.+|+.++. +. ++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~--~~fD~ 321 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PE--EQPDA 321 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cC--CCCCE
Confidence 45568899999999999999888764 34599999999 6999999999999986 4999999998764 33 68999
Q ss_pred EEEecc----ccccc--------cch-------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWM----GYCLF--------YES-------MLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~----~~~l~--------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+++.. +..-. .+. ....++..+.++|||||+++.++|+
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 997643 21110 011 1235788889999999999999988
No 125
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.05 E-value=9.8e-10 Score=101.32 Aligned_cols=109 Identities=23% Similarity=0.275 Sum_probs=81.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
+.......++.+|||+|||+|.++..+++. ..+|+|+|++ .+++.+++++.. .++++++++|+.++.++. .++
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~--~~~ 78 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPK--LQP 78 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccc--cCC
Confidence 334455677889999999999999999988 4599999999 699999988754 246999999999886664 569
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
|.|+++...+. ....+..++.. ..+.++|.++.+..
T Consensus 79 d~vi~n~Py~~--~~~~i~~~l~~--~~~~~~~~l~~q~e 114 (169)
T smart00650 79 YKVVGNLPYNI--STPILFKLLEE--PPAFRDAVLMVQKE 114 (169)
T ss_pred CEEEECCCccc--HHHHHHHHHhc--CCCcceEEEEEEHH
Confidence 99999876332 12344444432 23457888876654
No 126
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=1.5e-09 Score=115.51 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=88.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
....++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+|+.+ ++++++|+.++.... .++||+
T Consensus 246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~-~~~fD~ 323 (444)
T PRK14902 246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKF-AEKFDK 323 (444)
T ss_pred hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchh-cccCCE
Confidence 34567899999999999999988875 35699999999 69999999999999876 999999998753111 168999
Q ss_pred EEEeccccccc------------cch-------hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWMGYCLF------------YES-------MLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~~~~l~------------~e~-------~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+++....... .+. ....++..+.++|||||.++-+.++
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 99976422110 011 1245788888999999999988877
No 127
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.04 E-value=1.3e-09 Score=115.31 Aligned_cols=116 Identities=15% Similarity=0.063 Sum_probs=86.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
....+|.+|||+|||+|..+..+++. +..+|+|+|++ ++++.++++++..|+..++++..+|..........++||.|
T Consensus 234 L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 234 LAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRI 313 (426)
T ss_pred hCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEE
Confidence 35567899999999999999988875 54699999999 69999999999999874455577776544321112689999
Q ss_pred EEeccccc--cc--cc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYC--LF--YE---------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~--l~--~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++..... .. +. .....++..+.++|||||.++.+.|+
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 98653111 11 11 11356788889999999999999988
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.04 E-value=1.2e-09 Score=115.39 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=89.2
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceee
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVD 149 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D 149 (519)
....+|.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+.+ ++++++|+.++. ... ++||
T Consensus 233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~--~~fD 309 (431)
T PRK14903 233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQ--DTFD 309 (431)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhh--ccCC
Confidence 45678899999999999999888875 35699999999 69999999999999864 899999988754 222 6899
Q ss_pred EEEEecccccccc----c---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 150 IIISEWMGYCLFY----E---------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 150 ~Ivs~~~~~~l~~----e---------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.|+++........ . .....++....++|||||.++.++|+
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9998654221111 0 12356688888999999999999998
No 129
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.04 E-value=2e-09 Score=108.60 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=79.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCC--ceee
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGI--QKVD 149 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~--~~~D 149 (519)
+.++.+|||+|||+|..+..++++. ..+|+|+|+| +|++.|++++......-++.++++|+.+. .++... ....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 3467899999999999999888774 3589999999 69999998877543233478899999863 444210 1223
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++++....+++ .......+++.+++.|+|||.++.....
T Consensus 141 ~~~~gs~~~~~-~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 141 GFFPGSTIGNF-TPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EEEecccccCC-CHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 33333332323 3445678899999999999999866544
No 130
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.03 E-value=8e-10 Score=113.54 Aligned_cols=113 Identities=27% Similarity=0.261 Sum_probs=93.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVTILKGKVEEV--ELPFGIQKVDIII 152 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~~~~~d~~~~--~~~~~~~~~D~Iv 152 (519)
.+|++|||+-|-||..++.+|..||++|++||+| ..++.|++|++.||+. +++.++++|+.++ .......+||+||
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 4499999999999999999999999999999999 6999999999999985 6689999999876 1221225899999
Q ss_pred Eeccccccc------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLF------YESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~------~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.++..+.-. .......++..+.++|+|||.++..++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 988633221 1244566778888999999999988888
No 131
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.02 E-value=1.9e-09 Score=102.10 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=87.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecC-C-CCcee
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELP-F-GIQKV 148 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~-~-~~~~~ 148 (519)
..+.++||+||||+|..++.+|++ + ..+|+.+|.+ +.++.|+++++..|+.++|+++.+|+.+. .+. . ..++|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 356789999999999999999986 2 4699999999 69999999999999999999999999874 111 1 12589
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccc
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI 192 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 192 (519)
|+|+.+.- .......+..+.++|+|||.++.+..-+.+
T Consensus 123 D~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G 160 (205)
T PF01596_consen 123 DFVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRG 160 (205)
T ss_dssp EEEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred eEEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccc
Confidence 99998753 233445566667899999999999887544
No 132
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.02 E-value=1.7e-09 Score=106.91 Aligned_cols=130 Identities=28% Similarity=0.326 Sum_probs=91.6
Q ss_pred cHHhhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCC-CcEE
Q psy14674 53 HEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS-DVVT 130 (519)
Q Consensus 53 ~~~~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~-~~i~ 130 (519)
....+-|...++.+.... .+|++|||+-|-||.+++.++..|+.+|++||.| .+++.|+++++.||+. ++++
T Consensus 104 ktGlFlDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~ 177 (286)
T PF10672_consen 104 KTGLFLDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR 177 (286)
T ss_dssp STSS-GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE
T ss_pred cceEcHHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE
Confidence 334455554555433322 4689999999999999999999999999999999 6999999999999986 6899
Q ss_pred EEEceeeEe-e-cCCCCceeeEEEEeccccccc---cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 131 ILKGKVEEV-E-LPFGIQKVDIIISEWMGYCLF---YESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 131 ~~~~d~~~~-~-~~~~~~~~D~Ivs~~~~~~l~---~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++.+|+.+. . +. ..++||+||+++..+.-. -+..+..++..+.++|+|||.++..+++
T Consensus 178 ~~~~Dvf~~l~~~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 178 FIQGDVFKFLKRLK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp EEES-HHHHHHHHH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred EEecCHHHHHHHHh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 999998764 1 11 126899999988643221 1244566777788999999999987777
No 133
>PHA03411 putative methyltransferase; Provisional
Probab=99.02 E-value=7.6e-10 Score=107.89 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=71.2
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+.+|||+|||+|.++..+++. +..+|+|+|++ .|++.|+++.. +++++++|+.++... ++||+|++++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~~~---~kFDlIIsNP 134 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFESN---EKFDVVISNP 134 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhccc---CCCcEEEEcC
Confidence 4568999999999998888765 34699999999 69999987632 478999999876433 6899999988
Q ss_pred cccccccchh-----------------HHHHHHHHhcccCcCeEEE
Q psy14674 156 MGYCLFYESM-----------------LDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 156 ~~~~l~~e~~-----------------l~~~l~~~~r~LkpgG~li 184 (519)
..+.+..+.. +..++.....+|+|+|.++
T Consensus 135 PF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~ 180 (279)
T PHA03411 135 PFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAG 180 (279)
T ss_pred CccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEE
Confidence 7554332211 2344555566777777544
No 134
>PRK00811 spermidine synthase; Provisional
Probab=99.01 E-value=1.5e-09 Score=108.46 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=84.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC--C--CCcEEEEEceeeEeecCCCCceeeE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN--L--SDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~--~--~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
.++++||+||||+|.++..+++. +..+|++||++ ++++.|++.+...+ . ..+++++.+|+..+-.. ..++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCCcccE
Confidence 45789999999999999988887 67799999999 69999999876432 2 45799999998775211 2278999
Q ss_pred EEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+++.......... ....+++.+.+.|+|||+++.....
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99976433211111 2356778889999999999976544
No 135
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.01 E-value=2.2e-09 Score=88.54 Aligned_cols=101 Identities=34% Similarity=0.429 Sum_probs=79.2
Q ss_pred EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-CCCCceeeEEEEecccc
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-PFGIQKVDIIISEWMGY 158 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~D~Ivs~~~~~ 158 (519)
+|||+|||+|.++..+++.+..+++++|.+ .+++.+++.....+ ..+++++.+|+.+... .. +++|+|++..+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEAD--ESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccC--CceEEEEEcccee
Confidence 489999999999998887667799999999 58888876444333 3468999999988653 22 7899999987744
Q ss_pred ccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 159 CLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 159 ~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.. ......+++.+.+.|+|||.++..
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 32 456778888888999999999864
No 136
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.01 E-value=2e-09 Score=108.58 Aligned_cols=100 Identities=23% Similarity=0.233 Sum_probs=74.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC----CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL----SDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~----~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++.+..+. ..++++..+|++++ . ++||+|
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~---~~fD~V 216 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--S---GKYDTV 216 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--C---CCcCEE
Confidence 3578999999999999999999875 99999999 699999999876522 23478888887653 2 789999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|..+.+++..+ ....++..+.+ +.+||+++
T Consensus 217 v~~~vL~H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 217 TCLDVLIHYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEcCEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 987664444332 34455666654 56777766
No 137
>KOG2904|consensus
Probab=99.01 E-value=2.6e-09 Score=101.92 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=93.1
Q ss_pred cHHHHHHHHHHHHh---cCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674 59 DEVRTMTYRNSMYH---NKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133 (519)
Q Consensus 59 d~~r~~~y~~ai~~---~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~ 133 (519)
....++.+.+++.+ +....++..+||+|||+|.+++.++.. +...|+|+|.| .++..|.+|++.+++.+++.+++
T Consensus 126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~ 205 (328)
T KOG2904|consen 126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH 205 (328)
T ss_pred cCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence 34456666665544 234456678999999999999977664 77799999999 59999999999999999999997
Q ss_pred ceeeEe---ecCCCCceeeEEEEecccccc-----------ccc------------hhHHHHHHHHhcccCcCeEEEccC
Q psy14674 134 GKVEEV---ELPFGIQKVDIIISEWMGYCL-----------FYE------------SMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 134 ~d~~~~---~~~~~~~~~D~Ivs~~~~~~l-----------~~e------------~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
-+++.- +.+...+++|+++|++..-.- .+| ..+-.+..-..|+|+|||.+..+.
T Consensus 206 ~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 206 NIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 655442 222223899999998742100 011 222344555679999999988776
Q ss_pred Cc
Q psy14674 188 AS 189 (519)
Q Consensus 188 ~~ 189 (519)
..
T Consensus 286 ~~ 287 (328)
T KOG2904|consen 286 VE 287 (328)
T ss_pred cc
Confidence 64
No 138
>PLN02476 O-methyltransferase
Probab=98.99 E-value=2e-09 Score=105.94 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=88.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ec--CCCCce
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--EL--PFGIQK 147 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~--~~~~~~ 147 (519)
...++++|||||+|+|..++.+|+. ...+|+++|.+ +.++.|+++++++|+.++|+++.+|+.+. .+ ....++
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 4457889999999999999999885 24589999999 69999999999999999999999998764 11 111258
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
||+|+.+.- ......+++.+.++|+|||.++.+..-
T Consensus 195 FD~VFIDa~------K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 195 YDFAFVDAD------KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 999988653 234566677777999999999988766
No 139
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=8.6e-11 Score=109.08 Aligned_cols=108 Identities=25% Similarity=0.322 Sum_probs=79.2
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
......+=+++||+|||||..+..+... +.+++|+|+| +|+++|.++- +-+ ++.++++..+......++||+
T Consensus 119 ~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg----~YD--~L~~Aea~~Fl~~~~~er~DL 191 (287)
T COG4976 119 GKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG----LYD--TLYVAEAVLFLEDLTQERFDL 191 (287)
T ss_pred HhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc----chH--HHHHHHHHHHhhhccCCcccc
Confidence 3344444579999999999999988777 6699999999 6999998752 211 344444443311112279999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|++.-+ +.+-+.++.++.....+|+|||.+.++.-+
T Consensus 192 i~AaDV---l~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 192 IVAADV---LPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhhhhH---HHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 988555 445567888898899999999999988877
No 140
>PTZ00146 fibrillarin; Provisional
Probab=98.96 E-value=3.4e-09 Score=104.56 Aligned_cols=103 Identities=16% Similarity=0.175 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCCCce
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFGIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~ 147 (519)
..+.++.+|||+|||+|.++..+++. + ..+|||||++ .|.+...+.++.. .+|.++.+|+... ..+. +.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~--~~ 202 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLV--PM 202 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhccc--CC
Confidence 45788999999999999999999987 3 4689999999 5665544444322 3478899998642 1122 57
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+|+|+++.. . ......++.++.++|||||.++..
T Consensus 203 vDvV~~Dva---~--pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVA---Q--PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCC---C--cchHHHHHHHHHHhccCCCEEEEE
Confidence 999999874 1 223445666788999999999863
No 141
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.96 E-value=2.2e-09 Score=100.72 Aligned_cols=100 Identities=23% Similarity=0.349 Sum_probs=71.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF 143 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 143 (519)
..+.++.+|||+|||+|.++..+++. +..+|+|+|+|++. .. .+++++++|+.+.. .+.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCC
Confidence 45678999999999999999888775 35589999999632 11 23788888887642 232
Q ss_pred CCceeeEEEEeccccc-----ccc---chhHHHHHHHHhcccCcCeEEEcc
Q psy14674 144 GIQKVDIIISEWMGYC-----LFY---ESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~~-----l~~---e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
++||+|+++...+. +.+ ....+.++..+.++|+|||.++..
T Consensus 97 --~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 97 --DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred --CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 68999998653211 111 122467788899999999998864
No 142
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.95 E-value=3.9e-09 Score=102.33 Aligned_cols=111 Identities=19% Similarity=0.166 Sum_probs=82.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-C
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-G 144 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~ 144 (519)
.|+....+.+|.+|||.|.|+|.++..++++ +.++|+..|.. +.++.|+++++..|+.++|++.+.|+.+-.++. .
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL 110 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc
Confidence 4555688999999999999999999999987 56799999999 699999999999999999999999996533321 1
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhccc-CcCeEEEccC
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWL-ATNGLLFPDK 187 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~L-kpgG~lip~~ 187 (519)
...+|.|+.+.. ....++..+.+.| ++||.++.-.
T Consensus 111 ~~~~DavfLDlp--------~Pw~~i~~~~~~L~~~gG~i~~fs 146 (247)
T PF08704_consen 111 ESDFDAVFLDLP--------DPWEAIPHAKRALKKPGGRICCFS 146 (247)
T ss_dssp TTSEEEEEEESS--------SGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred cCcccEEEEeCC--------CHHHHHHHHHHHHhcCCceEEEEC
Confidence 267999988764 2333456667889 8999887433
No 143
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.95 E-value=3.2e-09 Score=100.61 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=88.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEE-ceeeEeecCCCCceeeE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK-GKVEEVELPFGIQKVDI 150 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~D~ 150 (519)
...++++||+||++.|+.++++|.. + ..++++||.+ ++++.|++++++.|+.++|+++. +|..+.-.....++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 4558899999999999999988886 4 5699999999 69999999999999999999999 57766421112289999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+.+.- ......+++.+.++|+|||+++.+..-
T Consensus 136 iFIDad------K~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 136 VFIDAD------KADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred EEEeCC------hhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 987642 233556677777899999999988876
No 144
>PLN02672 methionine S-methyltransferase
Probab=98.94 E-value=5.1e-09 Score=119.50 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=100.2
Q ss_pred cccHHhhhcHHHHHHHHHHHHhcC-CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCC-
Q psy14674 51 GIHEEMLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLS- 126 (519)
Q Consensus 51 ~~~~~~l~d~~r~~~y~~ai~~~~-~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~- 126 (519)
......+..+..++.+.+.+.... ...++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++|++.|+++
T Consensus 90 ~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~ 169 (1082)
T PLN02672 90 MEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDD 169 (1082)
T ss_pred eeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccc
Confidence 344455555666777766632211 1124679999999999999999876 45699999999 6999999999987542
Q ss_pred --------------CcEEEEEceeeEeecCCCCceeeEEEEecccc------ccc-----c-------------------
Q psy14674 127 --------------DVVTILKGKVEEVELPFGIQKVDIIISEWMGY------CLF-----Y------------------- 162 (519)
Q Consensus 127 --------------~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~------~l~-----~------------------- 162 (519)
++++++++|+.+.. +....+||+|||++..- .+. +
T Consensus 170 ~~~~~~~~~~~~l~~rV~f~~sDl~~~~-~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~ 248 (1082)
T PLN02672 170 DGLPVYDGEGKTLLDRVEFYESDLLGYC-RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFV 248 (1082)
T ss_pred ccccccccccccccccEEEEECchhhhc-cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCC
Confidence 57999999987642 21113799999987410 000 0
Q ss_pred --c---hhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674 163 --E---SMLDTVLYARDKWLATNGLLFPDKASLFICGI 195 (519)
Q Consensus 163 --e---~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i 195 (519)
+ .....++....++|+|||.++.+...-....+
T Consensus 249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v 286 (1082)
T PLN02672 249 EDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAV 286 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHH
Confidence 1 12356777888999999999987765444433
No 145
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.94 E-value=4.4e-09 Score=106.81 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=78.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++.+|||+|||+|.+++.+++.+ ++|+|+|.+ ++++.|+++++.+++ ++++++++|+.++.... .++||+|++++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~-~~~~D~Vv~dP 248 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ-GEVPDLVLVNP 248 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc-CCCCeEEEECC
Confidence 356899999999999999999986 599999999 699999999999998 46999999998753211 15799999987
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.-.. ....++..+. .++|+++++.+...
T Consensus 249 Pr~G-----~~~~~~~~l~-~~~~~~ivyvsc~p 276 (315)
T PRK03522 249 PRRG-----IGKELCDYLS-QMAPRFILYSSCNA 276 (315)
T ss_pred CCCC-----ccHHHHHHHH-HcCCCeEEEEECCc
Confidence 6322 2233333332 36777777655443
No 146
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.94 E-value=2.9e-09 Score=98.52 Aligned_cols=107 Identities=28% Similarity=0.474 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCC--CCCcEEEEEceeeEe---e-cCCCCc
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNN--LSDVVTILKGKVEEV---E-LPFGIQ 146 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~--~~~~i~~~~~d~~~~---~-~~~~~~ 146 (519)
....++++|||+|||+|..++.+++. +..+|+..|.++.++.++.+++.|+ ...++.+...+..+- . +.. .
T Consensus 41 ~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~--~ 118 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEP--H 118 (173)
T ss_dssp GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS---S
T ss_pred hhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccc--c
Confidence 44678899999999999999999999 7789999999999999999999988 566688877765431 1 222 5
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
+||+|++.-+ +..+...+.++..+.++|+++|.++.
T Consensus 119 ~~D~IlasDv---~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 119 SFDVILASDV---LYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp SBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred cCCEEEEecc---cchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 8999998665 44567788899999999999987553
No 147
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.93 E-value=8.4e-09 Score=104.69 Aligned_cols=110 Identities=21% Similarity=0.280 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC---------CCCCcEEEEEceeeEee----cCC
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN---------NLSDVVTILKGKVEEVE----LPF 143 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~---------~~~~~i~~~~~d~~~~~----~~~ 143 (519)
++.+|||+|||-|.-..-..+++.++++|+|++ ..++.|+++.+.. ...-...++.+|..... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 788999999999987777777888999999999 6899999988321 11123567777765432 233
Q ss_pred CCceeeEEEEec-cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 144 GIQKVDIIISEW-MGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 144 ~~~~~D~Ivs~~-~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
...+||+|-|-. +.|.+..+.....++..+...|+|||++|-..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 225999998865 45555667778889999999999999999443
No 148
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.93 E-value=2.1e-09 Score=100.13 Aligned_cols=110 Identities=25% Similarity=0.330 Sum_probs=81.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIIS 153 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs 153 (519)
..|.+|||+-||||.+++.+..+|+++|+.||.+ ..++..+++++..+..++++++.+|+...- +.....+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5799999999999999999999999999999999 699999999999999888999999976541 2101279999999
Q ss_pred eccccccccchhHHHHHHHHh--cccCcCeEEEccCCc
Q psy14674 154 EWMGYCLFYESMLDTVLYARD--KWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~--r~LkpgG~lip~~~~ 189 (519)
++....-.. ...++..+. .+|+++|.++.+...
T Consensus 121 DPPY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 121 DPPYAKGLY---YEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp --STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred CCCcccchH---HHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 986332221 245555554 899999999977755
No 149
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.93 E-value=6.9e-09 Score=99.28 Aligned_cols=108 Identities=19% Similarity=0.124 Sum_probs=81.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHH------H-C----CCCCcEEEEEceeeEeecC-
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVD------K-N----NLSDVVTILKGKVEEVELP- 142 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~------~-~----~~~~~i~~~~~d~~~~~~~- 142 (519)
..++.+||+.|||.|.-+.++|++|. +|+|+|+|+ +++.+.+... . + --...|+++++|+.++...
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34678999999999999999999998 799999994 7777655210 0 0 0123599999999987532
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
...++||+|+-....+.+ ...+.....+.+.++|+|||.++.
T Consensus 120 ~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 222689999876665555 456788889999999999998763
No 150
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.91 E-value=7.6e-09 Score=110.04 Aligned_cols=117 Identities=24% Similarity=0.310 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--
Q psy14674 64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-- 140 (519)
Q Consensus 64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-- 140 (519)
+...+.++......++.+|||+|||+|.+++.+++.+ .+|+|+|+| +|++.|+++++.+++.+ ++++.+|+.+..
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhh
Confidence 3333444444456678899999999999999999886 599999999 69999999999999864 999999987531
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+...++||+|++++.-..+ ..++..+.+ ++|+++++.+...
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~------~~~~~~l~~-~~~~~ivyvSCnp 402 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAGA------AEVMQALAK-LGPKRIVYVSCNP 402 (443)
T ss_pred hhhhcCCCCEEEECcCCcCh------HHHHHHHHh-cCCCeEEEEEeCh
Confidence 11112579999998763321 233454544 6888887765533
No 151
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.5e-08 Score=93.21 Aligned_cols=113 Identities=23% Similarity=0.302 Sum_probs=87.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEE
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIII 152 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Iv 152 (519)
...|.++||+-+|||.+++.++.+|+.+++.||.+ ......++|++..+...+.+++..|+... .+.. .++||+|+
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~-~~~FDlVf 119 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGT-REPFDLVF 119 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCC-CCcccEEE
Confidence 36899999999999999999999999999999999 79999999999999888899999999844 2221 13499999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.++....-..+.......-.-..+|+|+|.++.+...
T Consensus 120 lDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 120 LDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred eCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 9987442111111222222245889999999988776
No 152
>KOG1541|consensus
Probab=98.87 E-value=9.4e-09 Score=95.19 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=75.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
+..-|||||||+|..+..+...|. ..+|+|+| .|++.|.+.--+ -.++.+|+-+ .+|...+.||-+||-..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~-GlpfrpGtFDg~ISISA 121 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGE-GLPFRPGTFDGVISISA 121 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCC-CCCCCCCccceEEEeee
Confidence 467899999999999999998885 89999999 699999863211 2577788764 45554599999998543
Q ss_pred cccccc--------chhHHHHHHHHhcccCcCeEEEccC
Q psy14674 157 GYCLFY--------ESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 157 ~~~l~~--------e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
...+.+ ...+..++..+..+|++|+..+..-
T Consensus 122 vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 122 VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 222221 1335567777889999999887543
No 153
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.87 E-value=7.8e-09 Score=97.52 Aligned_cols=99 Identities=23% Similarity=0.295 Sum_probs=72.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-e-ecCCCCceeeEEE
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-V-ELPFGIQKVDIII 152 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~~D~Iv 152 (519)
+.++.+|||||||+|.++..+++.+...++|+|+| ++++.|++ . +++++++|+.+ + +++. ++||+|+
T Consensus 11 i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~----~~~~~~~d~~~~l~~~~~--~sfD~Vi 80 (194)
T TIGR02081 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R----GVNVIQGDLDEGLEAFPD--KSFDYVI 80 (194)
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c----CCeEEEEEhhhcccccCC--CCcCEEE
Confidence 34678999999999999998887655588999999 68888764 2 26788888875 2 2333 7899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+..+.+++ .....+++++.|.++++.+.+|..
T Consensus 81 ~~~~l~~~---~d~~~~l~e~~r~~~~~ii~~p~~ 112 (194)
T TIGR02081 81 LSQTLQAT---RNPEEILDEMLRVGRHAIVSFPNF 112 (194)
T ss_pred EhhHhHcC---cCHHHHHHHHHHhCCeEEEEcCCh
Confidence 98765544 346667777777777655555543
No 154
>PLN02366 spermidine synthase
Probab=98.84 E-value=1.6e-08 Score=101.65 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=83.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEee--cCCCCceee
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEVE--LPFGIQKVD 149 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~~--~~~~~~~~D 149 (519)
.++++||+||||.|.++..+++.+ ..+|+.||++ ++++.|++.+... ++ ..|++++.+|+.+.- .+. ++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCC
Confidence 567899999999999999999884 6799999999 5999999987643 23 358999999986541 222 6899
Q ss_pred EEEEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 150 IIISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+|+++......... -.-..+++.+.+.|+|||+++....+
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 99997653221111 12346788889999999999876655
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=98.81 E-value=2e-08 Score=101.65 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHH-----HHCCC-CCcEEEEEceeeEeecCCCCce
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIV-----DKNNL-SDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~-----~~~~~-~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
...+++||+||||+|..+..+.+. +..+|++||++ +|++.|++.. ....+ ..+++++.+|+.++- ....++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL-~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL-SSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH-HhcCCC
Confidence 355679999999999988888887 46799999999 6999999621 11222 468999999998752 112268
Q ss_pred eeEEEEecccccc--ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 148 VDIIISEWMGYCL--FYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 148 ~D~Ivs~~~~~~l--~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
||+|+++...... ...-.-..++..+++.|+|||+++.....
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999998642211 11112356788889999999999866544
No 156
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.1e-08 Score=100.23 Aligned_cols=119 Identities=25% Similarity=0.310 Sum_probs=96.4
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEeecCC
Q psy14674 66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEVELPF 143 (519)
Q Consensus 66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~ 143 (519)
+.+++.......+|..|||=-||||.+.+.+.-.|+ +|+|+|++ .|++-|+.|++..++.+ ..+... |+..++++.
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~ 262 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRD 262 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCCCC
Confidence 445666667889999999999999999999999988 99999999 69999999999999876 555555 999998885
Q ss_pred CCceeeEEEEecc-cccc-----ccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 144 GIQKVDIIISEWM-GYCL-----FYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 144 ~~~~~D~Ivs~~~-~~~l-----~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
.++|.|++++. |-.. .-+..+..+++...+.||+||++++...
T Consensus 263 --~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 263 --NSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred --CccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 57999999874 1111 1135577888889999999998875443
No 157
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.81 E-value=2.1e-08 Score=106.37 Aligned_cols=110 Identities=25% Similarity=0.328 Sum_probs=81.5
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCC
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGI 145 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 145 (519)
.+.......++.+|||+|||+|.+++.+|+. +++|+|+|++ ++++.|+++++.+++. +++++.+|+.+. .++...
T Consensus 283 ~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 283 RALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcC
Confidence 3333345567789999999999999999987 4599999999 6999999999999985 599999999763 111112
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
++||+|+.++.-.. ....+++.+. .|+|+++++.+
T Consensus 361 ~~~D~vi~dPPr~G-----~~~~~l~~l~-~l~~~~ivyvs 395 (431)
T TIGR00479 361 QIPDVLLLDPPRKG-----CAAEVLRTII-ELKPERIVYVS 395 (431)
T ss_pred CCCCEEEECcCCCC-----CCHHHHHHHH-hcCCCEEEEEc
Confidence 57999998876322 2344455544 37898877654
No 158
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.79 E-value=2.1e-08 Score=97.57 Aligned_cols=110 Identities=14% Similarity=0.138 Sum_probs=86.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCC---CCce
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPF---GIQK 147 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~---~~~~ 147 (519)
..+.++||+||+++|..++.+|+. ...+|+++|.+ +.++.|+++++..|+.++|+++.+++.+. .+.. ..++
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 456789999999999999988876 24599999999 69999999999999999999999998775 1110 0268
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 191 (519)
||+|+.+.- .......++.+.++|+|||+++.+..-|.
T Consensus 157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 999987643 12344556666789999999998877643
No 159
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.79 E-value=2.5e-08 Score=103.59 Aligned_cols=104 Identities=12% Similarity=0.158 Sum_probs=80.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++.+|||+|||+|.+++.++..+ .+|+|+|++ ++++.|+++++.+++. +++++.+|+.++... ..++||+|+.++
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~-~~~~~D~vi~DP 308 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATA-QMSAPELVLVNP 308 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHh-cCCCCCEEEECC
Confidence 456799999999999999999876 599999999 6999999999999986 699999999764211 114699999998
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.-. +....+++.+. .++|+++++.+...
T Consensus 309 Pr~-----G~~~~~l~~l~-~~~p~~ivyvsc~p 336 (374)
T TIGR02085 309 PRR-----GIGKELCDYLS-QMAPKFILYSSCNA 336 (374)
T ss_pred CCC-----CCcHHHHHHHH-hcCCCeEEEEEeCH
Confidence 733 22344455553 47899888766543
No 160
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.79 E-value=1.4e-08 Score=93.56 Aligned_cols=103 Identities=24% Similarity=0.320 Sum_probs=74.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDII 151 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~I 151 (519)
-+.+|.+|||+|||.|.+...+.+....+.+|+|++ +.+..+.+ +| +.++++|+++- .+++ ++||.|
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f~d--~sFD~V 79 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADFPD--QSFDYV 79 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhCCC--CCccEE
Confidence 357899999999999999888887655599999999 55544433 34 68999999874 3454 899999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL 190 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 190 (519)
|.+-. +..-...+.++.++.|+-|.+=+-+|+-+.|
T Consensus 80 Ilsqt---LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W 115 (193)
T PF07021_consen 80 ILSQT---LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHW 115 (193)
T ss_pred ehHhH---HHhHhHHHHHHHHHHHhcCeEEEEecChHHH
Confidence 87655 3333456677777766655554555666553
No 161
>KOG2899|consensus
Probab=98.79 E-value=2.8e-08 Score=93.34 Aligned_cols=114 Identities=24% Similarity=0.342 Sum_probs=78.9
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechH-HHHHHHHHHHHCC---------------------------
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSN-IVEYAKEIVDKNN--------------------------- 124 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~-~~~~A~~~~~~~~--------------------------- 124 (519)
...+.++.+|||||.+|.++..+|+. |...|.|+|+++ .++.|++.++..-
T Consensus 54 ~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred ccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 45678899999999999999999987 888999999995 9999999875321
Q ss_pred -------CCCcEEEEEceeeEe-e--cCCCCceeeEEEEecc---ccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 125 -------LSDVVTILKGKVEEV-E--LPFGIQKVDIIISEWM---GYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 125 -------~~~~i~~~~~d~~~~-~--~~~~~~~~D~Ivs~~~---~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+++++.+...+..-. . +.....+||+|+|-.+ .|.-.+.+-+..++..+.++|.|||++|.+-
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 011111111111100 0 0111268999999543 2333345568899999999999999998543
No 162
>KOG1975|consensus
Probab=98.78 E-value=1.8e-08 Score=98.33 Aligned_cols=116 Identities=21% Similarity=0.266 Sum_probs=86.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCC-----cEEEEEceeeEee----cCC
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSD-----VVTILKGKVEEVE----LPF 143 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~-----~i~~~~~d~~~~~----~~~ 143 (519)
.-..++..++|+|||-|.-.+-.-++|...++|+|+++ .++.|+++.++..-.. .+.|+.+|..... ++.
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 34567889999999999988888888999999999996 8899988876432111 2688999876542 222
Q ss_pred CCceeeEEEEecc-ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 144 GIQKVDIIISEWM-GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 144 ~~~~~D~Ivs~~~-~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+.+||+|-|-.. .|.+..+.....++..+.+.|+|||++|-....
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 2245999988554 344445566778889999999999999944433
No 163
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.76 E-value=4e-08 Score=91.42 Aligned_cols=121 Identities=23% Similarity=0.329 Sum_probs=85.7
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcC--CC--------EEEEEech-HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674 65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG--AA--------RVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133 (519)
Q Consensus 65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~--------~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~ 133 (519)
....+++......++..|||--||+|.+.+.++..+ .. +++|+|++ ++++.|++|++..++.+.|.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 344566666777889999999999999988877652 22 38899999 69999999999999999999999
Q ss_pred ceeeEeecCCCCceeeEEEEecc-ccccc----cchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 134 GKVEEVELPFGIQKVDIIISEWM-GYCLF----YESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 134 ~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~----~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.|+.+++++. +.+|+||+++. |.-+. .+.....+++.+.+.|++...++...
T Consensus 95 ~D~~~l~~~~--~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 95 WDARELPLPD--GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp --GGGGGGTT--SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred cchhhccccc--CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 9999987554 79999999885 22122 12445677888899999965555443
No 164
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.76 E-value=4.1e-08 Score=97.51 Aligned_cols=112 Identities=17% Similarity=0.113 Sum_probs=80.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
..+++||+||||+|.++..+++.+ ..+|+++|++ ++++.|++.+...+ + ..+++++.+|..+.- ....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l-~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL-ADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH-HhCCCCccEE
Confidence 345699999999999998887774 6799999999 69999999875432 1 246888888876531 1112789999
Q ss_pred EEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++.......... ....+++.+.+.|+|||+++....+
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9976532211111 1356778889999999999977544
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.74 E-value=4.3e-08 Score=98.15 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=70.2
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.|.....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++..++..++++++++|+.+..+ ..
T Consensus 27 ~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~----~~ 101 (294)
T PTZ00338 27 KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF----PY 101 (294)
T ss_pred HHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc----cc
Confidence 34444566788999999999999999998875 489999999 6999999999887766779999999987654 36
Q ss_pred eeEEEEecccc
Q psy14674 148 VDIIISEWMGY 158 (519)
Q Consensus 148 ~D~Ivs~~~~~ 158 (519)
+|+|+++...+
T Consensus 102 ~d~VvaNlPY~ 112 (294)
T PTZ00338 102 FDVCVANVPYQ 112 (294)
T ss_pred cCEEEecCCcc
Confidence 89999987633
No 166
>PRK03612 spermidine synthase; Provisional
Probab=98.73 E-value=2.8e-08 Score=107.57 Aligned_cols=112 Identities=20% Similarity=0.153 Sum_probs=81.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCC-CEEEEEech-HHHHHHHHH--HHH---CCCC-CcEEEEEceeeEeecCCCCcee
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEI--VDK---NNLS-DVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~A~~~--~~~---~~~~-~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
.++++|||||||+|..+..+++.+. .+|++||++ ++++.|+++ ... ..+. .+++++.+|..+.- ....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l-~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL-RKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH-HhCCCCC
Confidence 4678999999999999998888754 799999999 699999983 221 1232 47999999988752 1112789
Q ss_pred eEEEEecccccccc--chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 149 DIIISEWMGYCLFY--ESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 149 D~Ivs~~~~~~l~~--e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+|+++........ .-.-..+++.+.+.|||||.++.+...
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 99999865322110 111245677888999999999977654
No 167
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.70 E-value=6.9e-08 Score=95.25 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=66.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.|.....+.++.+|||||||+|.++..+++.+ .+|+|+|++ .|++.+++++.. .++++++++|+.+++++ .
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~----~ 91 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP----E 91 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch----h
Confidence 34444566788999999999999999999985 499999999 699999988754 24699999999886554 4
Q ss_pred eeEEEEecccc
Q psy14674 148 VDIIISEWMGY 158 (519)
Q Consensus 148 ~D~Ivs~~~~~ 158 (519)
+|.|+++...+
T Consensus 92 ~d~Vv~NlPy~ 102 (258)
T PRK14896 92 FNKVVSNLPYQ 102 (258)
T ss_pred ceEEEEcCCcc
Confidence 89999987643
No 168
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.70 E-value=5.8e-08 Score=91.38 Aligned_cols=99 Identities=28% Similarity=0.375 Sum_probs=71.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
...+|.+|||+.||-|.+++.+|+. .++.|+|+|++ .+++.++++++.|++.++|..+++|+.++.. . +.+|.|+
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~--~~~drvi 174 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-E--GKFDRVI 174 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----T--T-EEEEE
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-c--cccCEEE
Confidence 3678999999999999999999983 46689999999 5999999999999999999999999988744 3 8999999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEE
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLL 183 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~l 183 (519)
.+...... .++.+..+++++||.+
T Consensus 175 m~lp~~~~-------~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 175 MNLPESSL-------EFLDAALSLLKEGGII 198 (200)
T ss_dssp E--TSSGG-------GGHHHHHHHEEEEEEE
T ss_pred ECChHHHH-------HHHHHHHHHhcCCcEE
Confidence 87653222 2355556788999876
No 169
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.67 E-value=8e-08 Score=92.03 Aligned_cols=107 Identities=25% Similarity=0.269 Sum_probs=79.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHH-------CC----CCCcEEEEEceeeEeecC
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDK-------NN----LSDVVTILKGKVEEVELP 142 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~-------~~----~~~~i~~~~~d~~~~~~~ 142 (519)
...++.+||..|||.|.-...+|++|. +|+|+|+|+ +++.|.+.... .+ -.++|+++++|+.++...
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456778999999999999999999988 999999994 77777433211 00 123589999999886543
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
. .++||+|+-....+.+ ...+.+...+.+.++|+|||.++
T Consensus 113 ~-~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 113 D-VGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp C-HHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEE
T ss_pred h-cCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEE
Confidence 2 2589999987665545 45678889999999999999954
No 170
>KOG3010|consensus
Probab=98.65 E-value=1.6e-08 Score=95.29 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=67.7
Q ss_pred EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccc
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC 159 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~ 159 (519)
.++|+|||+|..+..+|.. .++|+|+|+| .|++.|++.-...-.....+....++.++ ...++++|+|+|.-..|.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L--~g~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDL--LGGEESVDLITAAQAVHW 112 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccc--cCCCcceeeehhhhhHHh
Confidence 8999999999888888887 6799999999 69998887543221111123333333333 322389999998666555
Q ss_pred cccchhHHHHHHHHhcccCcCe-EEE
Q psy14674 160 LFYESMLDTVLYARDKWLATNG-LLF 184 (519)
Q Consensus 160 l~~e~~l~~~l~~~~r~LkpgG-~li 184 (519)
+ +++.+.+.+.|+||++| .+.
T Consensus 113 F----dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 113 F----DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred h----chHHHHHHHHHHcCCCCCEEE
Confidence 4 36777888899998876 544
No 171
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.65 E-value=8.3e-08 Score=95.41 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=64.6
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
+.....+.++.+|||||||+|.++..+++.+. +|+|+|++ .|++.++++... ++++++++|+.+++++. -.+
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~--~~~ 106 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE--LQP 106 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH--cCc
Confidence 33344567888999999999999999999865 99999999 699999887642 46999999999876552 125
Q ss_pred eEEEEecc
Q psy14674 149 DIIISEWM 156 (519)
Q Consensus 149 D~Ivs~~~ 156 (519)
|.||+++.
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 89999875
No 172
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.62 E-value=1.6e-07 Score=88.47 Aligned_cols=106 Identities=26% Similarity=0.326 Sum_probs=75.9
Q ss_pred EEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe---ecCCCCceeeEEEEec
Q psy14674 81 IVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV---ELPFGIQKVDIIISEW 155 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~~~~D~Ivs~~ 155 (519)
.+||||||.|.+.+.+|+. +...++|+|++ +.+..|.+++...++.+ +.++++|+..+ -++. +++|.|....
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~--~~v~~i~i~F 96 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPP--GSVDRIYINF 96 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTT--TSEEEEEEES
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccC--CchheEEEeC
Confidence 9999999999988877766 77799999999 78888888888888865 99999998874 2333 7899998755
Q ss_pred cccccccc-----hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYE-----SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e-----~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
..-..-.. -.-..++..+.+.|+|||.+...+-.
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 43222211 12346788889999999988755433
No 173
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.61 E-value=2.7e-08 Score=92.97 Aligned_cols=113 Identities=27% Similarity=0.283 Sum_probs=89.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC-CCcEEEEEceeeEe--ecCCCCceeeE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL-SDVVTILKGKVEEV--ELPFGIQKVDI 150 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~-~~~i~~~~~d~~~~--~~~~~~~~~D~ 150 (519)
....|.+|||...|-|..++.++++|+.+|+.+|.+ ..++.|.-|-=..++ +.+|+++.||+.++ .+++ ++||+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D--~sfDa 208 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDD--ESFDA 208 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCc--cccce
Confidence 455799999999999999999999999999999999 588887654211122 22489999999887 4454 89999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+.++.-..+..+-.-+.+..++.|+|||||.++--..+
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 999887555555656677888999999999999855444
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.60 E-value=1.7e-07 Score=94.43 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=60.5
Q ss_pred CCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEE-ceeeEee--cCCCCceeeEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILK-GKVEEVE--LPFGIQKVDII 151 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~-~d~~~~~--~~~~~~~~D~I 151 (519)
++.++||||||+|.+...++. ....+++|+|++ .+++.|+++++.| ++.++|+++. .+..++. +....++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999966655544 444599999999 5999999999999 7999998865 3333221 10112689999
Q ss_pred EEecccc
Q psy14674 152 ISEWMGY 158 (519)
Q Consensus 152 vs~~~~~ 158 (519)
+|++..+
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9999744
No 175
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.59 E-value=1.5e-07 Score=90.57 Aligned_cols=99 Identities=22% Similarity=0.261 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHH-HHHHHHHCCCCCcE-EEEEceeeEee---
Q psy14674 67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEY-AKEIVDKNNLSDVV-TILKGKVEEVE--- 140 (519)
Q Consensus 67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~-A~~~~~~~~~~~~i-~~~~~d~~~~~--- 140 (519)
..++.......++++|||+|||+|.++..+++.|+++|+|+|++ .|+.. .++. .++ .+...|+....
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~ 136 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPAD 136 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhH
Confidence 33443333346889999999999999999999999999999999 56654 2221 112 22333443221
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+......+|++++.. ..++..+.++|+| |.++
T Consensus 137 ~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 137 IFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred cCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 111113567665532 2235666788888 7655
No 176
>KOG2361|consensus
Probab=98.57 E-value=1.4e-07 Score=88.92 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=76.9
Q ss_pred EEEEECCcccHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEEEe
Q psy14674 81 IVLDIGCGTGILSMFAAKSG---AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIIISE 154 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g---~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Ivs~ 154 (519)
+||+||||.|.....+.+-. .-+|+|+|.| .+++..+++...+. .++.....|+..-. -+...+++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 89999999999888777652 2489999999 58888887765433 34555555554322 22233789999987
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+...+..+. ...++..+.++|||||.++.....
T Consensus 152 FvLSAi~pek-~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 152 FVLSAIHPEK-MQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred EEEeccChHH-HHHHHHHHHHHhCCCcEEEEeecc
Confidence 7665555554 567789999999999999977655
No 177
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.55 E-value=4.8e-07 Score=88.33 Aligned_cols=105 Identities=21% Similarity=0.205 Sum_probs=81.3
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.+.......+.++|||||+|+|.++..++++ +..+++.+|.-++++.+++ .+||+++.+|+. -++| .
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P---~- 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLP---V- 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCS---S-
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhc---c-
Confidence 3444456667789999999999999988876 6669999999888888887 578999999998 4666 5
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcC--eEEEcc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATN--GLLFPD 186 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg--G~lip~ 186 (519)
+|+++...+.|.... .....+|+.+++.|+|| |.++..
T Consensus 159 ~D~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 159 ADVYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp ESEEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred ccceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 999998888776554 44667899999999999 988743
No 178
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.53 E-value=2.1e-07 Score=96.49 Aligned_cols=98 Identities=20% Similarity=0.217 Sum_probs=77.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
+.+|||++||+|.+++.++.. ++.+|+++|++ ++++.++++++.|++.+ ++++++|+..+-... ++||+|+.++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~--~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEE--RKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhc--CCCCEEEECCC
Confidence 468999999999999998764 66799999999 69999999999999875 779999987642112 67999999875
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+. ...++....+.+++||++..+
T Consensus 135 Gs-------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GS-------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC-------cHHHHHHHHHHhcCCCEEEEE
Confidence 21 233455544678999999877
No 179
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.51 E-value=4.8e-07 Score=93.21 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=74.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC----------CC----
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP----------FG---- 144 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~----------~~---- 144 (519)
.+|||+|||+|.+++.+++. +++|+|||.+ ++++.|+++++.+++.+ ++++.+|+.++... ..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccc
Confidence 47999999999999988876 4699999999 79999999999999865 99999999774211 00
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
..++|+|+.++.-. +....+++.+. +|+++++.+...
T Consensus 277 ~~~~d~v~lDPPR~-----G~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 277 SYNCSTIFVDPPRA-----GLDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred cCCCCEEEECCCCC-----CCcHHHHHHHH---cCCcEEEEEcCH
Confidence 02379999988732 22344455443 367777755443
No 180
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.50 E-value=1.3e-06 Score=81.31 Aligned_cols=98 Identities=29% Similarity=0.384 Sum_probs=77.3
Q ss_pred EEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccc
Q psy14674 81 IVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGY 158 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~ 158 (519)
+++|||+|.|.-++.+|-. +..+++.+|.+ .-+...+..+...|+++ ++++++++++ .... ++||+|+|..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~-~~~~--~~fd~v~aRAv~- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE-PEYR--ESFDVVTARAVA- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH-TTTT--T-EEEEEEESSS-
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc-cccC--CCccEEEeehhc-
Confidence 8999999999888877665 66799999999 57777778888888875 9999999998 2222 899999998873
Q ss_pred ccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 159 CLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 159 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+..++.-+.++|++||.++.-.+.
T Consensus 126 ------~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 126 ------PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp ------SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred ------CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3566777788999999999866655
No 181
>KOG3191|consensus
Probab=98.50 E-value=1e-06 Score=79.60 Aligned_cols=103 Identities=20% Similarity=0.287 Sum_probs=78.1
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 79 GKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+.+||||||+|..+.++++. +.....++|++ .+++..++.++.|+.. +.+++.|+... +.. +++|+++.++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~-l~~--~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSG-LRN--ESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhh-hcc--CCccEEEECC
Confidence 679999999999999999887 45578899999 5889889988888764 78899888764 333 8999999876
Q ss_pred ccccc------------------ccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 156 MGYCL------------------FYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 156 ~~~~l------------------~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
..--- .+....+.++.++..+|.|.|.++.-
T Consensus 119 PYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 119 PYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred CcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 31111 11123566777777888999987643
No 182
>PLN02823 spermine synthase
Probab=98.48 E-value=5.4e-07 Score=91.71 Aligned_cols=110 Identities=14% Similarity=0.217 Sum_probs=80.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
..++||.||+|.|.++..+.+. +..+|++||++ ++++.|++....++ + ..+++++.+|...+- ....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L-~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL-EKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH-hhCCCCccEEE
Confidence 5679999999999999988886 57799999999 69999999875432 2 468999999988752 22227899999
Q ss_pred Eeccccc---cccchhHHHHHH-HHhcccCcCeEEEccCC
Q psy14674 153 SEWMGYC---LFYESMLDTVLY-ARDKWLATNGLLFPDKA 188 (519)
Q Consensus 153 s~~~~~~---l~~e~~l~~~l~-~~~r~LkpgG~lip~~~ 188 (519)
.+..... ....-.-..+++ .+.+.|+|||+++.+..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9853211 011111234555 67899999999986544
No 183
>KOG0820|consensus
Probab=98.47 E-value=6.1e-07 Score=85.93 Aligned_cols=87 Identities=23% Similarity=0.369 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674 65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF 143 (519)
Q Consensus 65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~ 143 (519)
...+.|...+.+.++..||++|-|||.++..+.++|+ +|+|+|++ .|+....++++....+++.++++||+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 3445677778899999999999999999999999966 99999999 59999999988877779999999999987777
Q ss_pred CCceeeEEEEecc
Q psy14674 144 GIQKVDIIISEWM 156 (519)
Q Consensus 144 ~~~~~D~Ivs~~~ 156 (519)
.||.+|++..
T Consensus 123 ---~fd~cVsNlP 132 (315)
T KOG0820|consen 123 ---RFDGCVSNLP 132 (315)
T ss_pred ---ccceeeccCC
Confidence 5999999764
No 184
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.46 E-value=3e-07 Score=84.00 Aligned_cols=78 Identities=8% Similarity=0.003 Sum_probs=60.7
Q ss_pred EEEech-HHHHHHHHHHHHC--CCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCe
Q psy14674 105 IGIECS-NIVEYAKEIVDKN--NLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG 181 (519)
Q Consensus 105 ~gvD~s-~~~~~A~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG 181 (519)
+|+|+| +|++.|+++.+.. +..++++++++|++++++++ ++||+|++....+++ .....++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~--~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDD--CEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCC--CCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCe
Confidence 489999 6999998776532 22346999999999887665 799999986653333 457788999999999999
Q ss_pred EEEccC
Q psy14674 182 LLFPDK 187 (519)
Q Consensus 182 ~lip~~ 187 (519)
.++...
T Consensus 76 ~l~i~d 81 (160)
T PLN02232 76 RVSILD 81 (160)
T ss_pred EEEEEE
Confidence 997443
No 185
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.46 E-value=7e-07 Score=92.39 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=73.4
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC------------C
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF------------G 144 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~------------~ 144 (519)
.+|||++||+|.+++.+++. +++|+|||.+ ++++.|+++++.+++. +++++.+|+.++- +.. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhccccccccccccc
Confidence 57999999999999988876 5699999999 6999999999999986 5999999997641 110 0
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
..+||+|+.++.-. +..+.++..+.+ |+++++.+..
T Consensus 286 ~~~~D~v~lDPPR~-----G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 286 SYNFSTIFVDPPRA-----GLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred CCCCCEEEECCCCC-----CCcHHHHHHHHc---cCCEEEEEeC
Confidence 12589999998732 233444444433 6776665443
No 186
>KOG1663|consensus
Probab=98.45 E-value=1.2e-06 Score=82.27 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=87.3
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--e-cC-CCCce
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--E-LP-FGIQK 147 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~-~~-~~~~~ 147 (519)
.+..++++||||.=||..++..|.+ ..++|+++|++ +..+.+.+..+..|..++|+++++++.+. + ++ .+.+.
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4567899999999999888877776 35599999999 69999999999999999999999998764 1 11 12378
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccc
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFI 192 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~ 192 (519)
||++|.+.- ..........+.++||+||+++.+...|..
T Consensus 150 fDfaFvDad------K~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 150 FDFAFVDAD------KDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eeEEEEccc------hHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 999987542 112224455566999999999999887665
No 187
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.43 E-value=1.7e-06 Score=87.95 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCC----------------------------------------
Q psy14674 63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA---------------------------------------- 102 (519)
Q Consensus 63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~---------------------------------------- 102 (519)
.+....+|+......++..++|--||+|.+.+.+|..+..
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 4555667777788888899999999999999988876421
Q ss_pred EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc-ccccccch----hHHHHHHHHhcc
Q psy14674 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM-GYCLFYES----MLDTVLYARDKW 176 (519)
Q Consensus 103 ~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~~e~----~l~~~l~~~~r~ 176 (519)
.++|+|++ .+++.|+.|++..|+.+.|+|.++|+..+..+. +.+|+|||++. |.-+..+. ....+...+++.
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 37899999 699999999999999999999999999986664 68999999986 22233332 333455566677
Q ss_pred cCcCeEEEccCCc
Q psy14674 177 LATNGLLFPDKAS 189 (519)
Q Consensus 177 LkpgG~lip~~~~ 189 (519)
++--+.+++....
T Consensus 334 ~~~ws~~v~tt~e 346 (381)
T COG0116 334 LAGWSRYVFTTSE 346 (381)
T ss_pred hcCCceEEEEccH
Confidence 7777777766555
No 188
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=8.5e-07 Score=89.52 Aligned_cols=102 Identities=27% Similarity=0.318 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
...|.+|||.-||-|.+++.+|+.|..+|+|+|++ .+++.++++++.|++.++|..++||+.++.... +.+|-|+..
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~ 263 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--GVADRIIMG 263 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc--ccCCEEEeC
Confidence 45699999999999999999999998779999999 599999999999999999999999999875443 679999875
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
... . -..++....+.+++||.+-..
T Consensus 264 ~p~---~----a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 264 LPK---S----AHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred CCC---c----chhhHHHHHHHhhcCcEEEEE
Confidence 542 1 122344445778889987643
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.38 E-value=1.2e-06 Score=86.18 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=63.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCcee
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
+.......++.+|||||||+|.++..+++.+. +|+++|++ .+++.++++... ..+++++++|+.+++++ .+
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~----~~ 92 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP----DF 92 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh----Hc
Confidence 33445567789999999999999999999865 79999999 699999887643 34699999999886544 35
Q ss_pred e---EEEEecc
Q psy14674 149 D---IIISEWM 156 (519)
Q Consensus 149 D---~Ivs~~~ 156 (519)
| +|+++..
T Consensus 93 d~~~~vvsNlP 103 (253)
T TIGR00755 93 PKQLKVVSNLP 103 (253)
T ss_pred CCcceEEEcCC
Confidence 5 8888765
No 190
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.38 E-value=2.1e-06 Score=91.17 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=86.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceee
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVD 149 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D 149 (519)
...+|.+|||++||.|.=+..+|.. +...|+|+|++ .-++.+++++++.|+.+ +.+...|...+. ++ +.||
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~---~~fD 185 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALP---ETFD 185 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhch---hhcC
Confidence 4578999999999999988877775 34589999999 68999999999999875 888888887652 23 6799
Q ss_pred EEEEecc----ccccccc---------------hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 150 IIISEWM----GYCLFYE---------------SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 150 ~Ivs~~~----~~~l~~e---------------~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.|+.+.. |.+-.+. .....+|....++|||||.++-++|+
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9996553 2221111 11246778888999999999999998
No 191
>KOG3420|consensus
Probab=98.38 E-value=4.4e-07 Score=78.70 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=68.4
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
......|++++|+|||+|.++..++-.+...|+|+|+. ++++.+++|+....++ +.++++|+.++.+.. +.||.+
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~~--g~fDta 118 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELKG--GIFDTA 118 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhccC--CeEeeE
Confidence 34567899999999999999977777788899999999 6999999999887765 699999999876554 899999
Q ss_pred EEecc
Q psy14674 152 ISEWM 156 (519)
Q Consensus 152 vs~~~ 156 (519)
+.++.
T Consensus 119 viNpp 123 (185)
T KOG3420|consen 119 VINPP 123 (185)
T ss_pred EecCC
Confidence 98764
No 192
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.37 E-value=1.7e-06 Score=97.01 Aligned_cols=122 Identities=18% Similarity=0.215 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCC-CCCCEEEEECCcccHHHHHHHHc------C-----------------------------------
Q psy14674 63 TMTYRNSMYHNKHL-FKGKIVLDIGCGTGILSMFAAKS------G----------------------------------- 100 (519)
Q Consensus 63 ~~~y~~ai~~~~~~-~~~~~VLDiGcGtG~ls~~la~~------g----------------------------------- 100 (519)
.+.+..+++..... .++..++|.+||+|.+.+.+|.. |
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 34555666665555 56789999999999988877652 0
Q ss_pred --CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc-ccccccchhHHHHHHHHhcc
Q psy14674 101 --AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM-GYCLFYESMLDTVLYARDKW 176 (519)
Q Consensus 101 --~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~-~~~l~~e~~l~~~l~~~~r~ 176 (519)
..+++|+|++ .+++.|++|+..+|+.+.|++.++|+.++..+...+++|+|++++. +.-+.....+..+...+...
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~ 333 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR 333 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence 1269999999 6999999999999999899999999998765532257999999975 22222223334443333333
Q ss_pred c---CcCeEEE
Q psy14674 177 L---ATNGLLF 184 (519)
Q Consensus 177 L---kpgG~li 184 (519)
| .+|+.+.
T Consensus 334 lk~~~~g~~~~ 344 (702)
T PRK11783 334 LKQQFGGWNAA 344 (702)
T ss_pred HHHhCCCCeEE
Confidence 3 3776554
No 193
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.4e-06 Score=91.48 Aligned_cols=118 Identities=24% Similarity=0.281 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC
Q psy14674 64 MTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP 142 (519)
Q Consensus 64 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~ 142 (519)
+.+...++......++.+|||+=||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|++.| ++|+.++++++...
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~ 356 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhh
Confidence 333334444556678889999999999999999976 5699999999 69999999999999988 99999999987432
Q ss_pred C-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 143 F-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 143 ~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
. ....+|.|+.++.-.++. +.+++.+. .++|..+++.+...
T Consensus 357 ~~~~~~~d~VvvDPPR~G~~-----~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 357 WWEGYKPDVVVVDPPRAGAD-----REVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred ccccCCCCEEEECCCCCCCC-----HHHHHHHH-hcCCCcEEEEeCCH
Confidence 1 124789999988754432 34455553 45677777655543
No 194
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.37 E-value=8.8e-07 Score=83.24 Aligned_cols=105 Identities=24% Similarity=0.157 Sum_probs=73.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
...++||.|||-|..+..+...-+.+|-.||+. ..++.|++.+.. +.....++++..++++.++. .+||+|.+-|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~-~~~~v~~~~~~gLQ~f~P~~--~~YDlIW~QW~ 131 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK-DNPRVGEFYCVGLQDFTPEE--GKYDLIWIQWC 131 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC-GGCCEEEEEES-GGG----T--T-EEEEEEES-
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc-cCCCcceEEecCHhhccCCC--CcEeEEEehHh
Confidence 356999999999999986644447899999999 699999987654 12234678888888876554 79999999998
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.-+|..+ ++-.++..+...|+|+|.++.-
T Consensus 132 lghLTD~-dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 132 LGHLTDE-DLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp GGGS-HH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCHH-HHHHHHHHHHHhCcCCcEEEEE
Confidence 7667654 5677889999999999998843
No 195
>PRK04148 hypothetical protein; Provisional
Probab=98.36 E-value=2.5e-06 Score=74.60 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=56.7
Q ss_pred HHHhcCCCCCCCEEEEECCcccH-HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGI-LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ 146 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~-ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 146 (519)
.|..+....++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.|+++ + +.++.+|+.+-.+.- -+
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~-y~ 76 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEI-YK 76 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHH-Hh
Confidence 34333444567899999999996 9999999887 99999999 577777654 2 688999988753321 16
Q ss_pred eeeEEEEe
Q psy14674 147 KVDIIISE 154 (519)
Q Consensus 147 ~~D~Ivs~ 154 (519)
.+|+|.|-
T Consensus 77 ~a~liysi 84 (134)
T PRK04148 77 NAKLIYSI 84 (134)
T ss_pred cCCEEEEe
Confidence 79999883
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=2.2e-06 Score=82.27 Aligned_cols=108 Identities=24% Similarity=0.186 Sum_probs=81.3
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEec
Q psy14674 80 KIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISEW 155 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~~ 155 (519)
..+||||||.|.....+|+. +...++|||+. +.+..|.+.+.+.++. ++.+++.|+.++ .++. +++.|-|+...
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~-~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP-DGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC-CCCeeEEEEEC
Confidence 58999999999888877766 77799999999 7888898999999986 499999999876 2222 15888887755
Q ss_pred cccccc--c---chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLF--Y---ESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~--~---e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
..-..- | .-....+++...+.|+|||.+...+-.
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 422221 1 112346788889999999998765543
No 197
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.33 E-value=1.5e-06 Score=79.55 Aligned_cols=105 Identities=21% Similarity=0.384 Sum_probs=79.3
Q ss_pred HHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC
Q psy14674 66 YRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG 144 (519)
Q Consensus 66 y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 144 (519)
..+.|..+.....|++|||+|+|+|..+..++++|++.|++.|+.+ ..+.++-|++.||.. |.+...|... -+
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~~-- 140 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--SP-- 140 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--CC--
Confidence 4456667778889999999999999999999999999999999995 777888899999975 7888877754 22
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCe
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG 181 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG 181 (519)
..+|+|+..-+ ..+...-..++. +.+.|+..|
T Consensus 141 -~~~Dl~LagDl---fy~~~~a~~l~~-~~~~l~~~g 172 (218)
T COG3897 141 -PAFDLLLAGDL---FYNHTEADRLIP-WKDRLAEAG 172 (218)
T ss_pred -cceeEEEeece---ecCchHHHHHHH-HHHHHHhCC
Confidence 68999987544 333334445555 444454444
No 198
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.32 E-value=5.5e-06 Score=80.72 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHhcCCCCCCCEEEEECCcccHHHHHHHH-cC--CCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee-c
Q psy14674 67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK-SG--AARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE-L 141 (519)
Q Consensus 67 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~-~g--~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~ 141 (519)
..+|.....-...-+||||.||.|...+-+.. .+ ..+|.-.|.|+ .++..++.+++.|+.+.++|.++|+.+.. +
T Consensus 124 ~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 124 RQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred HHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 33443333334567999999999987665544 33 36899999994 89999999999999998899999987751 2
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
..-..+.++++.+.+...+....++...+..+.+.+.|||++|-..-.
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQP 251 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQP 251 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 211146799988887666666566777889999999999999955433
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.5e-06 Score=82.90 Aligned_cols=84 Identities=24% Similarity=0.299 Sum_probs=69.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.|.....+.++..|||||+|.|.++..+++.+. +|+|+|++ .+++..++... ..++++++++|+...+++... .
T Consensus 21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~-~ 95 (259)
T COG0030 21 KIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLA-Q 95 (259)
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhc-C
Confidence 455566777799999999999999999999966 89999999 58888888765 345699999999998887311 6
Q ss_pred eeEEEEeccc
Q psy14674 148 VDIIISEWMG 157 (519)
Q Consensus 148 ~D~Ivs~~~~ 157 (519)
++.||++...
T Consensus 96 ~~~vVaNlPY 105 (259)
T COG0030 96 PYKVVANLPY 105 (259)
T ss_pred CCEEEEcCCC
Confidence 8999998763
No 200
>KOG2940|consensus
Probab=98.31 E-value=6.5e-07 Score=83.48 Aligned_cols=100 Identities=20% Similarity=0.367 Sum_probs=79.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~ 157 (519)
...++|||||-|.++..+...|..+++-+|.| .|++.++.. +++++. +....+|-+.+++.+ .++|+|+++..
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ldf~e--ns~DLiisSls- 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLDFKE--NSVDLIISSLS- 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhcccccc--cchhhhhhhhh-
Confidence 45899999999999999998899999999999 799888763 334442 566777877766555 89999999776
Q ss_pred cccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 158 YCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+++..+++.....++..|||+|.++-+
T Consensus 147 --lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 --LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred --hhhhccCchHHHHHHHhcCCCccchhH
Confidence 444456777777888999999999844
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.29 E-value=1.3e-06 Score=79.23 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=56.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce-eeEEEEecc
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK-VDIIISEWM 156 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~D~Ivs~~~ 156 (519)
..|+|+.||.|..+..+|+. ..+|+|||++ ..++.|+.+++-.|+.++|+++++|+.++........ +|+|+.++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 37999999999999999998 4599999999 5999999999999999999999999988632210022 899998775
No 202
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.28 E-value=3.1e-06 Score=79.58 Aligned_cols=109 Identities=20% Similarity=0.331 Sum_probs=67.7
Q ss_pred CCCEEEEECCccc----HHHHHHHHc---CC---CEEEEEech-HHHHHHHHHH--------------HH-----C--C-
Q psy14674 78 KGKIVLDIGCGTG----ILSMFAAKS---GA---ARVIGIECS-NIVEYAKEIV--------------DK-----N--N- 124 (519)
Q Consensus 78 ~~~~VLDiGcGtG----~ls~~la~~---g~---~~V~gvD~s-~~~~~A~~~~--------------~~-----~--~- 124 (519)
+.-+|+.+||+|| .+++.+.+. .. -+|+|+|+| .+++.|++-+ ++ . +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999 366666662 12 389999999 6999987632 00 0 0
Q ss_pred -----CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 125 -----LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 125 -----~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.++|+|.+.|+.+...+. ++||+|+|.-+..++. +.....+++.+.+.|+|||+++.....
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~--~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPF--GRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred eEChHHcCceEEEecccCCCCccc--CCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 1236889999988722222 7999999965544343 445688899999999999999977665
No 203
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.28 E-value=1.9e-06 Score=82.94 Aligned_cols=96 Identities=25% Similarity=0.209 Sum_probs=69.5
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
...++||||+|.|..+..++.. .++|++.|.| .|... +++.|+ +++. ..++.-. +.+||+|.|--+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl~--~~~w~~~--~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVLD--IDDWQQT--DFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEEe--hhhhhcc--CCceEEEeehhh
Confidence 4568999999999999999887 6699999999 57544 334453 3332 2223212 268999988443
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+..-.....+++.+++.|+|+|+++....-
T Consensus 161 ---LDRc~~P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 161 ---LDRCDRPLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred ---hhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 444455778899999999999999876654
No 204
>KOG1661|consensus
Probab=98.28 E-value=1.6e-06 Score=80.11 Aligned_cols=99 Identities=29% Similarity=0.372 Sum_probs=72.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-C--CCEEEEEech-HHHHHHHHHHHHCC--------C-CCcEEEEEceeeEeec
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-G--AARVIGIECS-NIVEYAKEIVDKNN--------L-SDVVTILKGKVEEVEL 141 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~gvD~s-~~~~~A~~~~~~~~--------~-~~~i~~~~~d~~~~~~ 141 (519)
.+.+|.+.||+|+|||+|+..+++. | ...+.|||.- ++++.+++++.+.- + ..++.++.+|......
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 4789999999999999999988865 3 2245999988 79999999986543 1 2357889999988755
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+. .+||.|.+-... ....+. +...|+|||.++
T Consensus 159 e~--a~YDaIhvGAaa-----~~~pq~----l~dqL~~gGrll 190 (237)
T KOG1661|consen 159 EQ--APYDAIHVGAAA-----SELPQE----LLDQLKPGGRLL 190 (237)
T ss_pred cc--CCcceEEEccCc-----cccHHH----HHHhhccCCeEE
Confidence 54 899999875321 122333 335677877666
No 205
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.26 E-value=1.5e-06 Score=86.31 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=77.5
Q ss_pred CCEEEEECCccc----HHHHHHHHcC-----CCEEEEEech-HHHHHHHHHH------------------HH-----CC-
Q psy14674 79 GKIVLDIGCGTG----ILSMFAAKSG-----AARVIGIECS-NIVEYAKEIV------------------DK-----NN- 124 (519)
Q Consensus 79 ~~~VLDiGcGtG----~ls~~la~~g-----~~~V~gvD~s-~~~~~A~~~~------------------~~-----~~- 124 (519)
.-+|+..||+|| .+++.+.+.+ .-+|+|+|+| .+++.|++-+ .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 3566666541 2479999999 6999988752 00 01
Q ss_pred ------CCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 125 ------LSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 125 ------~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.+.|+|.+.|+.+.+.+. .++||+|+|.-+..++. ......++..+.+.|+|||+++.....
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF~-~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYFD-KTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcCC-HHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 2345788888887643331 27899999965544343 345788899999999999999866654
No 206
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.24 E-value=2.7e-06 Score=87.84 Aligned_cols=102 Identities=19% Similarity=0.151 Sum_probs=80.5
Q ss_pred CCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 79 GKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
+.+|||+.||+|..++.++.. |+++|+++|++ ++++.+++|++.|++. +++++++|+..+-.. ...+||+|+.++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~-~~~~fDvIdlDP 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRY-RNRKFHVIDIDP 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHH-hCCCCCEEEeCC
Confidence 458999999999999999886 78899999999 6999999999999886 488999998876221 115799999887
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+ ....+++.+.+.+++||++......
T Consensus 123 fG-------s~~~fld~al~~~~~~glL~vTaTD 149 (374)
T TIGR00308 123 FG-------TPAPFVDSAIQASAERGLLLVTATD 149 (374)
T ss_pred CC-------CcHHHHHHHHHhcccCCEEEEEecc
Confidence 42 1224566666788999998876433
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.22 E-value=3.2e-06 Score=82.63 Aligned_cols=111 Identities=21% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCC---CCcEEEEEceeeEeecCCCCc-eeeEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNL---SDVVTILKGKVEEVELPFGIQ-KVDII 151 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~---~~~i~~~~~d~~~~~~~~~~~-~~D~I 151 (519)
++++||-||-|.|..+..+.+.. ..+|++||++ .+++.|++....... ..|++++.+|...+-... .+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-QEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-SST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-cCCcccEE
Confidence 68899999999999999998885 6799999999 589999998764322 367999999998762221 14 89999
Q ss_pred EEeccccccccc-hhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYCLFYE-SMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~l~~e-~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.+......... -.-..+++.+++.|+|||+++.....
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 997754211111 12356788889999999999976544
No 208
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.19 E-value=5.2e-06 Score=77.68 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=76.3
Q ss_pred EEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC------CCceeeEEE
Q psy14674 81 IVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF------GIQKVDIII 152 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~------~~~~~D~Iv 152 (519)
+|||||||||.-+.++|++ +.-.-.-.|.. ....-.+..+...++++...-+..|+.+-..+. ..++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 6999999999998888876 55566677887 455666777777777665455666665542222 125899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|.-+.|...++ ..+.++....++|++||.++
T Consensus 108 ~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 108 CINMLHISPWS-AVEGLFAGAARLLKPGGLLF 138 (204)
T ss_pred ehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEE
Confidence 98887766654 56788899999999999988
No 209
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.18 E-value=5.4e-06 Score=85.43 Aligned_cols=87 Identities=33% Similarity=0.423 Sum_probs=59.0
Q ss_pred HhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------
Q psy14674 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-------- 141 (519)
Q Consensus 71 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-------- 141 (519)
.......++ .|||+-||.|.+++.+|+. +++|+|||.+ ++++.|+++++.|++.+ ++|+.++++++..
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~ 266 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAKAREF 266 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCCS-GG
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHhhHHH
Confidence 344444455 8999999999999999987 5599999999 69999999999999975 9999988765411
Q ss_pred ---C---CCCceeeEEEEecccccc
Q psy14674 142 ---P---FGIQKVDIIISEWMGYCL 160 (519)
Q Consensus 142 ---~---~~~~~~D~Ivs~~~~~~l 160 (519)
. .....+|+|+.++.-.++
T Consensus 267 ~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 267 NRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp TTGGGS-GGCTTESEEEE---TT-S
T ss_pred HhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 0 001368999998875444
No 210
>KOG2915|consensus
Probab=98.17 E-value=1.2e-05 Score=77.21 Aligned_cols=108 Identities=21% Similarity=0.245 Sum_probs=84.8
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 145 (519)
.|+....+.+|.+||+-|+|+|.++.+++++ +-++++..|.. .-++.|++-.++.|+.+++++.+.|+....+....
T Consensus 96 ~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 96 MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 3455578899999999999999999999997 56799999999 58899999999999999999999999887665544
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCe-EEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG-LLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~li 184 (519)
..+|.|+.+.. -.+ .++ --+...||.+| +++
T Consensus 176 ~~aDaVFLDlP---aPw----~Ai-Pha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 176 LKADAVFLDLP---APW----EAI-PHAAKILKDEGGRLC 207 (314)
T ss_pred cccceEEEcCC---Chh----hhh-hhhHHHhhhcCceEE
Confidence 78999987764 122 222 22234777766 444
No 211
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=1.4e-05 Score=75.81 Aligned_cols=95 Identities=26% Similarity=0.370 Sum_probs=75.8
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce-eeEEEEec
Q psy14674 79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK-VDIIISEW 155 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~-~D~Ivs~~ 155 (519)
+++++|||+|.|.-++.+|-. +..+|+-+|.. .-+...+....+.+++| ++++++.++++... .+ ||+|.|..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~---~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQE---KKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccc---cccCcEEEeeh
Confidence 689999999999888877633 45579999998 57777777778888876 99999999987543 23 99999988
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+. .+..+..-+..++|+||.++
T Consensus 144 va-------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 144 VA-------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred cc-------chHHHHHHHHHhcccCCcch
Confidence 72 35566666779999999875
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.11 E-value=1e-05 Score=76.69 Aligned_cols=111 Identities=18% Similarity=0.274 Sum_probs=62.0
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHH-cCCCEEEEEech-HHHHHHHH-------HHHHCCC-CCcEEEEEceeeEe
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKE-------IVDKNNL-SDVVTILKGKVEEV 139 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~gvD~s-~~~~~A~~-------~~~~~~~-~~~i~~~~~d~~~~ 139 (519)
|++...+.++...+|||||.|.....+|. .+.++++|||+. ...+.|+. .++..|. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 44456678899999999999988776664 488889999998 45555543 2333444 34688888887653
Q ss_pred ecCCC-CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 140 ELPFG-IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 140 ~~~~~-~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.... -...|+|+++.. ...+. +..-+..+...||+|.++|
T Consensus 114 ~~~~~~~s~AdvVf~Nn~---~F~~~-l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNNT---CFDPD-LNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHGHC-SEEEE--T---TT-HH-HHHHHHHHHTTS-TT-EEE
T ss_pred HhHhhhhcCCCEEEEecc---ccCHH-HHHHHHHHHhcCCCCCEEE
Confidence 21100 035799998765 23333 4444566667889998887
No 213
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.09 E-value=2.2e-05 Score=77.91 Aligned_cols=111 Identities=22% Similarity=0.196 Sum_probs=84.9
Q ss_pred CEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCC--C-CCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 80 KIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNN--L-SDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~--~-~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
++||-||-|.|..+..+.+.. ..+++.||++ .+++.|++.+.... . ..|++++.+|..++--.. .++||+|+.+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-~~~fDvIi~D 156 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-EEKFDVIIVD 156 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-CCcCCEEEEc
Confidence 699999999999999999984 6799999999 59999999875432 2 378999999988762211 1589999997
Q ss_pred ccccccccch-hHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674 155 WMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKASLF 191 (519)
Q Consensus 155 ~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~~~ 191 (519)
.....-..+. .-..+.+.+++.|+++|+++-+..+.+
T Consensus 157 ~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~ 194 (282)
T COG0421 157 STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPF 194 (282)
T ss_pred CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 6543211111 135678889999999999998866643
No 214
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.06 E-value=1.4e-05 Score=78.61 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=74.2
Q ss_pred CCCEEEEECCccc----HHHHHHHHcC------CCEEEEEech-HHHHHHHHHHHH-----CCC----------------
Q psy14674 78 KGKIVLDIGCGTG----ILSMFAAKSG------AARVIGIECS-NIVEYAKEIVDK-----NNL---------------- 125 (519)
Q Consensus 78 ~~~~VLDiGcGtG----~ls~~la~~g------~~~V~gvD~s-~~~~~A~~~~~~-----~~~---------------- 125 (519)
..-+|+-+||+|| .+++.+.+.+ .-+|+|.|+| .+++.|++-+=. .++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3569999999999 4666666653 3489999999 689888753211 111
Q ss_pred -------CCcEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 126 -------SDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 126 -------~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
...|.|-..|+.+-... .+.||+|+|--+.-++. +.....++...+..|+|||.++.-...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~--~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPF--LGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccc--cCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 12356666666554312 27899999954433333 455778899999999999999865544
No 215
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.5e-05 Score=75.66 Aligned_cols=108 Identities=22% Similarity=0.220 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHH-HHHHHHHHCCCCCcEE-EEEceeeEeec
Q psy14674 65 TYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVE-YAKEIVDKNNLSDVVT-ILKGKVEEVEL 141 (519)
Q Consensus 65 ~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~-~A~~~~~~~~~~~~i~-~~~~d~~~~~~ 141 (519)
....++....-..+|+++||||+-||.++..+.+.||++|||+|.. ..+. ..|. ..|+. +..-|+..+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~ 138 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTP 138 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCH
Confidence 3445565556678899999999999999999999999999999998 5333 3222 22343 44456665543
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.+-.+..|+++++... + .+..++.++..+|+|+|.+++
T Consensus 139 ~~~~~~~d~~v~DvSF--I----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 139 EDFTEKPDLIVIDVSF--I----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HHcccCCCeEEEEeeh--h----hHHHHHHHHHHhcCCCceEEE
Confidence 3323578999997641 1 256778888899999998773
No 216
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.02 E-value=3.4e-05 Score=68.92 Aligned_cols=106 Identities=23% Similarity=0.190 Sum_probs=76.9
Q ss_pred cCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC-CCc
Q psy14674 73 NKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF-GIQ 146 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~~ 146 (519)
......|.-|||+|.|||.++..+.++| ...++++|.| +......+.... +.++.||+.++. +.. .+.
T Consensus 43 ~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e~~gq 116 (194)
T COG3963 43 VIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGEHKGQ 116 (194)
T ss_pred ccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhhcCCC
Confidence 3456678899999999999999888886 3479999999 688777766433 678999988774 221 126
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.||.|||....-.+.. ...-++++.+...|..||.++-
T Consensus 117 ~~D~viS~lPll~~P~-~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 117 FFDSVISGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred eeeeEEeccccccCcH-HHHHHHHHHHHHhcCCCCeEEE
Confidence 7999999654221211 2234567777788999998883
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.00 E-value=1e-05 Score=75.28 Aligned_cols=98 Identities=26% Similarity=0.375 Sum_probs=60.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcC--CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCCce
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSG--AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGIQK 147 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~~ 147 (519)
++.+|||+||++|.++..+.+.+ ..+|+|+|+.++ ... ..+..+++|+.+.. ++...++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 34899999999999999999997 679999999854 111 23677778876542 1111258
Q ss_pred eeEEEEecccccccc----c----hhHHHHHHHHhcccCcCeEEEcc
Q psy14674 148 VDIIISEWMGYCLFY----E----SMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~----e----~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+|+|+|+........ + ......+..+.++|+|||.++.-
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 999999873221111 1 11222233444779999987743
No 218
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.95 E-value=3.2e-05 Score=83.48 Aligned_cols=109 Identities=23% Similarity=0.249 Sum_probs=79.4
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIIS 153 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs 153 (519)
.+..+||||||.|.+...+|+. +...++|+|++ +.+..|.+.+...++.| +.++.+|+..+ .++. +++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~--~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPN--NSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCc--ccccEEEE
Confidence 4679999999999988877776 66789999999 67777777777788865 88888887543 2444 78999987
Q ss_pred eccccccc-----cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 154 EWMGYCLF-----YESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l~-----~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
....-..- ..-.-..+++.+.+.|||||.+...+-.
T Consensus 424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 65432221 1112346788889999999988755543
No 219
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.95 E-value=2.4e-05 Score=78.52 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
+.+|.++|||||++|.++..+++.|+ +|+|||..+|..... . ..+|+.+.+|......+. +.+|+++|+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L~----~---~~~V~h~~~d~fr~~p~~--~~vDwvVcDm 278 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSLM----D---TGQVEHLRADGFKFRPPR--KNVDWLVCDM 278 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhhh----C---CCCEEEEeccCcccCCCC--CCCCEEEEec
Confidence 57899999999999999999999998 999999777554322 1 245888888887664323 7899999987
Q ss_pred cccccccchhHHHHHHHHhcccCcC
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATN 180 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~Lkpg 180 (519)
.. ....+..-+.++|..|
T Consensus 279 ve-------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 279 VE-------KPARVAELMAQWLVNG 296 (357)
T ss_pred cc-------CHHHHHHHHHHHHhcC
Confidence 61 2345556666777665
No 220
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.94 E-value=4.1e-05 Score=72.54 Aligned_cols=96 Identities=33% Similarity=0.427 Sum_probs=67.4
Q ss_pred EEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccc
Q psy14674 82 VLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC 159 (519)
Q Consensus 82 VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~ 159 (519)
|.||||--|.++..|.+.| +.+++|+|++ .-++.|+++++.+|+.++|++..+|..+. ++.+ +..|.|+...||-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~-e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPG-EDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GG-G---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCC-CCCCEEEEecCCHH
Confidence 6899999999999999997 5579999999 58999999999999999999999997653 3320 34899988777543
Q ss_pred cccchhHHHHHHHHhcccCcCeEEE
Q psy14674 160 LFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 160 l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+ ...++++....++....+|
T Consensus 79 l-----I~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 79 L-----IIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp H-----HHHHHHHTGGGGTT--EEE
T ss_pred H-----HHHHHHhhHHHhccCCeEE
Confidence 2 4556666655565544555
No 221
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.92 E-value=2.4e-05 Score=78.01 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=64.1
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHcC--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCc
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQ 146 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~ 146 (519)
......++..+||.+||.|..+..+++.. ..+|+|+|.+ +|++.|++++.. .+++++++++..++. ++.+..
T Consensus 13 ~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~ 89 (296)
T PRK00050 13 DALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLG 89 (296)
T ss_pred HhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCC
Confidence 33455678899999999999999998873 4699999999 699999988754 467999999998862 221112
Q ss_pred eeeEEEEec
Q psy14674 147 KVDIIISEW 155 (519)
Q Consensus 147 ~~D~Ivs~~ 155 (519)
++|.|+.+.
T Consensus 90 ~vDgIl~DL 98 (296)
T PRK00050 90 KVDGILLDL 98 (296)
T ss_pred ccCEEEECC
Confidence 799999865
No 222
>KOG2187|consensus
Probab=97.91 E-value=1.1e-05 Score=84.00 Aligned_cols=75 Identities=31% Similarity=0.474 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe
Q psy14674 63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV 139 (519)
Q Consensus 63 ~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~ 139 (519)
.+.+...|.+...+..++.+||+-||||.+++.+|+. +++|+|||++ +.++.|+++++.||+.+ .+|++|-++++
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~ 443 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhc
Confidence 3444456666778888999999999999999999875 8899999999 69999999999999987 89999977765
No 223
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.90 E-value=2.3e-05 Score=73.07 Aligned_cols=91 Identities=18% Similarity=0.245 Sum_probs=55.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
...++..|-|+|||.+.++..+. .+ .+|...|+-. .| + .++.+|+..+++++ +.+|++|+.
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~~-~~-~~V~SfDLva----------~n---~--~Vtacdia~vPL~~--~svDv~Vfc 129 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAVP-NK-HKVHSFDLVA----------PN---P--RVTACDIANVPLED--ESVDVAVFC 129 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH---S----EEEEESS-----------SS---T--TEEES-TTS-S--T--T-EEEEEEE
T ss_pred hcCCCEEEEECCCchHHHHHhcc-cC-ceEEEeeccC----------CC---C--CEEEecCccCcCCC--CceeEEEEE
Confidence 44556799999999999985543 22 3799999852 11 2 46779999888887 899999986
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
.. |-+ ..+..++.+..|+|||||.+...-.
T Consensus 130 LS---LMG-Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 130 LS---LMG-TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp S------S-S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hh---hhC-CCcHHHHHHHHheeccCcEEEEEEe
Confidence 54 222 2466778888999999999874433
No 224
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.89 E-value=6.5e-06 Score=69.50 Aligned_cols=99 Identities=27% Similarity=0.360 Sum_probs=43.8
Q ss_pred EEECCcccHHHHHHHHc----CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEecc
Q psy14674 83 LDIGCGTGILSMFAAKS----GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISEWM 156 (519)
Q Consensus 83 LDiGcGtG~ls~~la~~----g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~ 156 (519)
||||+..|..+..+++. +..+++++|..+..+.+++.++..++.++++++.++..+. .++. +++|+|+.+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~--~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPD--GPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH----EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCC--CCEEEEEECCC
Confidence 68999999887776654 2248999999964556666776677888899999998765 2332 68999988763
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
..++ .....+..+.+.|+|||+++.+.
T Consensus 79 ---H~~~-~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 ---HSYE-AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HH-HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---CCHH-HHHHHHHHHHHHcCCCeEEEEeC
Confidence 1122 33444667778999999998764
No 225
>PRK00536 speE spermidine synthase; Provisional
Probab=97.87 E-value=0.0001 Score=72.31 Aligned_cols=101 Identities=16% Similarity=0.010 Sum_probs=75.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC--CC-CCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN--NL-SDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~--~~-~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
...++||-||.|-|..+..+.+... +|+-||++ ++++.+++..... ++ ..|++++.. +. .... ++||+||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~--~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDI--KKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccC--CcCCEEE
Confidence 5578999999999999999999964 99999999 6999999854321 22 346777752 11 1111 6899999
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 191 (519)
.+.. . -..+.+.+++.|+|||+++-...+.+
T Consensus 145 vDs~----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 145 CLQE----P----DIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred EcCC----C----ChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 9853 1 13456778899999999998877743
No 226
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.85 E-value=1.5e-05 Score=83.13 Aligned_cols=101 Identities=15% Similarity=0.346 Sum_probs=63.6
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEech---H-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS---N-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s---~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.++||+|||+|.++..+...+. .+..+-.. + .++.|.+ .|+..-+.++ -...+++|+ +.||+|.|.-
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~~--~s~rLPfp~--~~fDmvHcsr 189 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGVL--GSQRLPFPS--NAFDMVHCSR 189 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhhh--ccccccCCc--cchhhhhccc
Confidence 4899999999999999988865 33333332 2 4444443 3444222211 234556666 8999999854
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 191 (519)
... .+...-..++-++.|+|+|||+++-+...++
T Consensus 190 c~i--~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 190 CLI--PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccc--cchhcccceeehhhhhhccCceEEecCCccc
Confidence 321 1111113467788999999999997766644
No 227
>KOG1501|consensus
Probab=97.83 E-value=2.1e-05 Score=79.89 Aligned_cols=212 Identities=13% Similarity=0.078 Sum_probs=122.6
Q ss_pred CCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc--cccccch-hHHHHHHHHhcc
Q psy14674 101 AARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG--YCLFYES-MLDTVLYARDKW 176 (519)
Q Consensus 101 ~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~--~~l~~e~-~l~~~l~~~~r~ 176 (519)
..+++-.+.++ .-....+++-...+.+ ++.+..= +..+ ++.|++.++++. ....+.. ..-....++...
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i---~t~~---ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~ 461 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAI---MTSP---DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMM 461 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhh---hcCC---CCCceeecchhhhhccCchhheeeeeeHHHHHHh
Confidence 45666677774 3334444444433332 2222111 1234 355877766641 1111111 111224555677
Q ss_pred cCcCeEEEccCCcccccccccccCCCcccccceeEEecCCCcceeeecccCccccccceeeeecccccChhhhhhhhh--
Q psy14674 177 LATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAI-- 254 (519)
Q Consensus 177 LkpgG~lip~~~~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~w~~~~G~d~~~~~~~~~-- 254 (519)
+-|+-.+-|..+.+-+.+ .+-+++..-. .-...+.|||++.|.++..
T Consensus 462 ~G~~~~V~P~~~~L~Ai~------------------------------~kF~DL~~I~-S~~G~~~GFDl~~~Dei~~kA 510 (636)
T KOG1501|consen 462 HGDELRVEPHMGVLKAIP------------------------------EKFEDLQNIA-SDVGTVNGFDLSFFDEISTKA 510 (636)
T ss_pred cCCceeeccccchhhhhh------------------------------HHHHHHHhhc-ccccccccceeeehhHHHHhh
Confidence 889989989998844333 2222222111 1235788999998866532
Q ss_pred ---------cCCcccccCCCCcccCCceEEEEecCCCCCCCceeeeeEEEEEEecceeeEEEEEEEEEEcCCCCceEEec
Q psy14674 255 ---------KEPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFST 325 (519)
Q Consensus 255 ---------~~~~v~~~~~~~~ls~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~g~~~g~~~wf~~~~~~~~~~v~lsT 325 (519)
..|++++ |..+++++.+++.||+...-..+ .-.+.+.+.|.-||+.+|++++|. ++.|||
T Consensus 511 ~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~----~~nLST 579 (636)
T KOG1501|consen 511 RTATDAIVDEQSLWEY--AGIVKGDAVEILRFPIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG----GINLST 579 (636)
T ss_pred chhhhhhhccchhhhc--cCeecCCceeEEEeccCCccccc-----eeEEEccCCCccccceeeEEeeeC----ceeecc
Confidence 2244544 66788999999999997543222 445677899999999999999996 467777
Q ss_pred CCCC--------CCCCeeeEEEeeCceeeecCCCEEEEEEEEEeCC
Q psy14674 326 APEA--------HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNP 363 (519)
Q Consensus 326 ~P~~--------~~thW~q~v~~l~~p~~v~~g~~i~~~~~~~~~~ 363 (519)
+-.+ ...|.||+||+... .+.....+.....+.++.
T Consensus 580 GLL~~~~~G~~~WN~~~KQ~VYF~~t--~L~~~ksl~~~~~F~~~T 623 (636)
T KOG1501|consen 580 GLLSISSAGVPEWNKGYKQGVYFPIT--ALRNDKSLCLHALFDKST 623 (636)
T ss_pred cceeecCCCCcccCccccceeEEEhH--HhCCCceEEEEEEEcCCC
Confidence 6532 13566899998732 233334566666666543
No 228
>KOG2730|consensus
Probab=97.81 E-value=1.2e-05 Score=74.85 Aligned_cols=101 Identities=21% Similarity=0.252 Sum_probs=73.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCCceeeEEEEe
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGIQKVDIIISE 154 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~D~Ivs~ 154 (519)
....|+|.-||.|..+...|..+. .|++||+++ -+..|+.+++-+|++++|+|++||+.++ .+......+|+|+-.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 556899999999988887777766 999999995 8999999999999999999999999876 122111457788764
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeE
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGL 182 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~ 182 (519)
+. ..+.+.+..-+..+...++|.|.
T Consensus 173 pp---wggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 173 PP---WGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CC---CCCcchhhhhhhhhhhhcchhHH
Confidence 43 22233333334445556666643
No 229
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.77 E-value=0.00043 Score=68.05 Aligned_cols=103 Identities=21% Similarity=0.204 Sum_probs=73.7
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH----C-----------------------------
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK----N----------------------------- 123 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~----~----------------------------- 123 (519)
...+||--|||.|.|+..+|+.|. .+.|.|.| -|+-..+-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 356999999999999999999988 99999999 575444433221 0
Q ss_pred ------CCCCcEEEEEceeeEeecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 124 ------NLSDVVTILKGKVEEVELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 124 ------~~~~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
....++....||+.++-.+. ..++||+|++..+ +.--..+-..++.+.++|||||+.|
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF---IDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF---IDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE---eechHHHHHHHHHHHHHhccCCEEE
Confidence 00124556667777663221 1268999988754 5555567778899999999999766
No 230
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.74 E-value=0.00011 Score=65.61 Aligned_cols=75 Identities=29% Similarity=0.497 Sum_probs=58.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHH-----cCCCEEEEEech-HHHHHHHHHHHHCC--CCCcEEEEEceeeEeecCCCCce
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAK-----SGAARVIGIECS-NIVEYAKEIVDKNN--LSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~-----~g~~~V~gvD~s-~~~~~A~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
..+...|+|+|||.|.++..++. ....+|+|||.+ .+++.|.++.+..+ +..++++..++..+.... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 99 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSS---DP 99 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhccc---CC
Confidence 45678999999999999999998 555699999999 68899998888877 555677777766553222 56
Q ss_pred eeEEEE
Q psy14674 148 VDIIIS 153 (519)
Q Consensus 148 ~D~Ivs 153 (519)
.+++++
T Consensus 100 ~~~~vg 105 (141)
T PF13679_consen 100 PDILVG 105 (141)
T ss_pred CeEEEE
Confidence 677765
No 231
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=4.9e-05 Score=71.19 Aligned_cols=99 Identities=21% Similarity=0.296 Sum_probs=68.2
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CC-CEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-GA-ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG 144 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 144 (519)
-+.++.+|+|||+-.|.++..+++. +. .+|+|+|+.+|--. .+ |.++++|+++-+ ++.
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~----------~~-V~~iq~d~~~~~~~~~l~~~l~~- 109 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI----------PG-VIFLQGDITDEDTLEKLLEALGG- 109 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC----------CC-ceEEeeeccCccHHHHHHHHcCC-
Confidence 3567899999999999999999987 32 34999999864322 22 899999987642 222
Q ss_pred CceeeEEEEeccc--------cccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 145 IQKVDIIISEWMG--------YCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 145 ~~~~D~Ivs~~~~--------~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.++|+|+|+... .+..........+.-....|+|||.++.-
T Consensus 110 -~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 110 -APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred -CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 468999997753 11111122333455556899999998743
No 232
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.72 E-value=0.0001 Score=65.49 Aligned_cols=57 Identities=37% Similarity=0.561 Sum_probs=48.9
Q ss_pred EEEEECCcccHHHHHHHHcCCC-EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAA-RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE 138 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~-~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~ 138 (519)
++||+|||.|.++..+++.+.. +|+++|++ .+.+.++++++.|++.+ ++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 4899999999999999988643 89999999 69999999999998865 8888876653
No 233
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.71 E-value=8.9e-05 Score=73.36 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=63.8
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCC-Cce
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFG-IQK 147 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~ 147 (519)
|.....+.++..|||||+|.|.++..+++.+ ++|+++|++ .+++..++... ...+++++.+|+.++..+.. ...
T Consensus 22 Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~~~~~~~ 97 (262)
T PF00398_consen 22 IVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLYDLLKNQ 97 (262)
T ss_dssp HHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGGGHCSSS
T ss_pred HHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccHHhhcCC
Confidence 3333455689999999999999999999987 699999999 58888887655 23569999999998765520 136
Q ss_pred eeEEEEecc
Q psy14674 148 VDIIISEWM 156 (519)
Q Consensus 148 ~D~Ivs~~~ 156 (519)
...|+++..
T Consensus 98 ~~~vv~NlP 106 (262)
T PF00398_consen 98 PLLVVGNLP 106 (262)
T ss_dssp EEEEEEEET
T ss_pred ceEEEEEec
Confidence 678888765
No 234
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.70 E-value=0.00012 Score=74.30 Aligned_cols=110 Identities=24% Similarity=0.192 Sum_probs=67.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHH--------cCCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEeecCCC
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAK--------SGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEVELPFG 144 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~--------~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~~~~~~ 144 (519)
...++.+|||-.||+|.+...+.+ ....+++|+|++ .++..|+-++.-.+.... ..+..+|....+....
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~ 122 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK 122 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence 556778999999999998877765 245589999999 588888888766665432 4577777654322211
Q ss_pred CceeeEEEEecccccc--ccc----------------hhHHHHHHHHhcccCcCeEEE
Q psy14674 145 IQKVDIIISEWMGYCL--FYE----------------SMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l--~~e----------------~~l~~~l~~~~r~LkpgG~li 184 (519)
..+||+|++++..... ... ..--.++..+.+.|++||++.
T Consensus 123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 2689999998753222 000 011135566678999999653
No 235
>KOG3045|consensus
Probab=97.69 E-value=8.8e-05 Score=70.80 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=64.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
......|-|+|||-+.++. .. ..+|+..|+-. .. -.++.+|+.++++++ +++|++|+..
T Consensus 178 r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-------------~~--~~V~~cDm~~vPl~d--~svDvaV~CL 236 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-------------VN--ERVIACDMRNVPLED--ESVDVAVFCL 236 (325)
T ss_pred CcCceEEEecccchhhhhh---cc-ccceeeeeeec-------------CC--CceeeccccCCcCcc--CcccEEEeeH
Confidence 3556799999999998765 22 33799999742 11 367889999988887 9999998754
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
. +-+ ..+..++.++.|+|++||.+...-
T Consensus 237 S---LMg-tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 237 S---LMG-TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred h---hhc-ccHHHHHHHHHHHhccCceEEEEe
Confidence 3 122 346778899999999999865443
No 236
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00041 Score=71.54 Aligned_cols=115 Identities=20% Similarity=0.212 Sum_probs=85.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC---CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCcee
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSG---AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKV 148 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g---~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~ 148 (519)
....+|.+|||+.++.|.=+..+|+.. ...|+|+|.+ .=++..+++++..|+.+ +.++..|...+. .....++|
T Consensus 152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcC
Confidence 567889999999999998777777662 2367999999 58999999999999987 778887776542 11111369
Q ss_pred eEEEEeccccc--cc-----------------cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 149 DIIISEWMGYC--LF-----------------YESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 149 D~Ivs~~~~~~--l~-----------------~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|.|+.+..-.. .. .......+|.+..++|||||.++-++|+
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 99998653111 11 0022346788888999999999999999
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.60 E-value=0.0006 Score=59.75 Aligned_cols=101 Identities=27% Similarity=0.342 Sum_probs=65.5
Q ss_pred EEEECCcccHHHHHHHHcCC--CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE--eecCCCCceeeEEEEecc
Q psy14674 82 VLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE--VELPFGIQKVDIIISEWM 156 (519)
Q Consensus 82 VLDiGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~D~Ivs~~~ 156 (519)
++|+|||+|... .+++... ..++|+|.+ .++..++......+... +.+..++... +++... ..+|++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDS-ASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCC-CceeEEeeeee
Confidence 999999999876 4444322 389999999 57777555443322111 6777777765 344421 37999933333
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+... ....+..+.+.|+|+|.++.....
T Consensus 129 ~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLP----PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcCC----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 22221 566788888999999998866555
No 238
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.59 E-value=0.00068 Score=64.07 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceee
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVD 149 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D 149 (519)
..+.+|.+||-+|+.+|.....++.. | .+.|||||.| ...+..-..+++. .+|-.+.+|+.... ...--+.+|
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EE
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccccc
Confidence 56788999999999999988888876 4 6689999999 3333333333332 34788888887531 111126899
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+|+++.. ..+..+.++..+..+||+||.++..
T Consensus 146 vI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 146 VIFQDVA-----QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 9999865 2234566677777899999988744
No 239
>KOG1269|consensus
Probab=97.57 E-value=0.00014 Score=74.74 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=86.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
....++..++|+|||-|..+...+..+...++|++.+ ..+..+.......++.++-.++.+++...+.++ ..||.+-
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fed--n~fd~v~ 183 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFED--NTFDGVR 183 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCc--cccCcEE
Confidence 4567778999999999999999998877799999999 466677666666677766667778887766665 8999997
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+.-.. .+.+....+++++.|.++|||+++-..
T Consensus 184 ~ld~~---~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 184 FLEVV---CHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred EEeec---ccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 75553 344567788899999999999998443
No 240
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.56 E-value=0.00026 Score=70.44 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCEEEEECCccc-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeE-e--ecCCCCceeeEEE
Q psy14674 79 GKIVLDIGCGTG-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEE-V--ELPFGIQKVDIII 152 (519)
Q Consensus 79 ~~~VLDiGcGtG-~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~-~--~~~~~~~~~D~Iv 152 (519)
..++||||||.. ++.+..++....+++|.|++ ..++.|+++++.| ++.++|+++...-.. + .+....+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 468999999987 55666665533499999999 5999999999999 999999998764332 1 1111226899999
Q ss_pred Eeccccc
Q psy14674 153 SEWMGYC 159 (519)
Q Consensus 153 s~~~~~~ 159 (519)
|++..|.
T Consensus 183 CNPPFy~ 189 (299)
T PF05971_consen 183 CNPPFYS 189 (299)
T ss_dssp E-----S
T ss_pred cCCcccc
Confidence 9997543
No 241
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.53 E-value=0.00079 Score=67.00 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=67.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
..+.+.+|||+|||.|.....+... ...+++++|.| .|++.++..++................+ ..+. .+.|+|
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~DLv 106 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRD-FLPF--PPDDLV 106 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcc-cccC--CCCcEE
Confidence 4567789999999999755544433 46689999999 6999999887654321111111111111 1121 344999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
++..+...+.. .....+++.+.+.+.+ -+++.+.++
T Consensus 107 i~s~~L~EL~~-~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 107 IASYVLNELPS-AARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred EEehhhhcCCc-hHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 98766555555 4566667766566655 444555555
No 242
>PRK10742 putative methyltransferase; Provisional
Probab=97.53 E-value=0.00037 Score=67.24 Aligned_cols=88 Identities=13% Similarity=0.079 Sum_probs=66.6
Q ss_pred HHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHC------C--CCCcEEEEEceeeE
Q psy14674 70 MYHNKHLFKGK--IVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKN------N--LSDVVTILKGKVEE 138 (519)
Q Consensus 70 i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~------~--~~~~i~~~~~d~~~ 138 (519)
|.....+.+|. +|||+-+|+|..+..++..|+ +|+++|.++ +....++.++.. + +..+++++++|..+
T Consensus 78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~ 156 (250)
T PRK10742 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_pred HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHH
Confidence 33334566776 999999999999999999998 599999995 777777777663 2 23579999999887
Q ss_pred eecCCCCceeeEEEEeccccc
Q psy14674 139 VELPFGIQKVDIIISEWMGYC 159 (519)
Q Consensus 139 ~~~~~~~~~~D~Ivs~~~~~~ 159 (519)
+- ......||+|+.++|..+
T Consensus 157 ~L-~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 157 AL-TDITPRPQVVYLDPMFPH 176 (250)
T ss_pred HH-hhCCCCCcEEEECCCCCC
Confidence 62 111157999999998443
No 243
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.52 E-value=0.00025 Score=69.21 Aligned_cols=114 Identities=20% Similarity=0.154 Sum_probs=66.3
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHC----------------CCC----------
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKN----------------NLS---------- 126 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~----------------~~~---------- 126 (519)
....+|.++||||||.-+.....|..-+.+++..|.++ -.+..++-++.. |-.
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 34557889999999997765555544577899999873 443333322221 100
Q ss_pred -CcE-EEEEceeeEee-cCC---CCceeeEEEEecccccc-ccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 127 -DVV-TILKGKVEEVE-LPF---GIQKVDIIISEWMGYCL-FYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 127 -~~i-~~~~~d~~~~~-~~~---~~~~~D~Ivs~~~~~~l-~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
..| .++.+|+.+.+ +.. ...++|+|++....... .........++.+.++|||||.++...
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 023 47778887642 211 01359999986643322 234556777888899999999998543
No 244
>KOG1709|consensus
Probab=97.49 E-value=0.00061 Score=63.47 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=77.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCC--CCcEEEEEceeeEe--ecCCCCceeeEE
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL--SDVVTILKGKVEEV--ELPFGIQKVDII 151 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~--~~~i~~~~~d~~~~--~~~~~~~~~D~I 151 (519)
.+|.+||.||-|-|+...++.+++..+-+-||.. +.++..++ +|+ .++|.++.+..++. .+++ +.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~----~gw~ek~nViil~g~WeDvl~~L~d--~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRD----WGWREKENVIILEGRWEDVLNTLPD--KHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHh----cccccccceEEEecchHhhhccccc--cCccee
Confidence 6889999999999999999998876678889999 57776665 443 35688888888776 4666 779999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
+-+..+. .+ +.+..+.+.+.|+|||+|.+-....
T Consensus 174 ~yDTy~e--~y-Edl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 174 YYDTYSE--LY-EDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred Eeechhh--HH-HHHHHHHHHHhhhcCCCceEEEecC
Confidence 8776532 22 3455666777899999998754433
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.43 E-value=0.00044 Score=69.12 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=84.4
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceee
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVD 149 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D 149 (519)
...++..|||+.+|.|.=+..+++. +.+.|+|.|++ .-+...+++++..|..+ +.++..|..... .+. ..||
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~--~~fd 158 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPE--SKFD 158 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHT--TTEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccc--cccc
Confidence 4578899999999999877777765 35699999999 68888899999999876 777778877652 221 4699
Q ss_pred EEEEecccccc----ccc---------------hhHHHHHHHHhccc----CcCeEEEccCCcc
Q psy14674 150 IIISEWMGYCL----FYE---------------SMLDTVLYARDKWL----ATNGLLFPDKASL 190 (519)
Q Consensus 150 ~Ivs~~~~~~l----~~e---------------~~l~~~l~~~~r~L----kpgG~lip~~~~~ 190 (519)
.|+.+..-... .+. .....++....+++ ||||+++-++|++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99986642211 110 12236778888999 9999999999993
No 246
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.40 E-value=0.0005 Score=74.95 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=54.4
Q ss_pred CCCEEEEECCcccHHHHHHHHcC---------CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec---CCC
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSG---------AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL---PFG 144 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g---------~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~---~~~ 144 (519)
.+.+|||.|||+|.+...+++.. ...++|+|++ .++..|+.++...+. ..+.+..+|...... ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999888776541 1478999999 589999998877652 125556555432211 111
Q ss_pred CceeeEEEEecc
Q psy14674 145 IQKVDIIISEWM 156 (519)
Q Consensus 145 ~~~~D~Ivs~~~ 156 (519)
.++||+||+++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 258999999986
No 247
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.34 E-value=0.0024 Score=64.64 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCCCCCEEEEECCcccHHHHH----HHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEe-e-cCC--
Q psy14674 75 HLFKGKIVLDIGCGTGILSMF----AAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEV-E-LPF-- 143 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~----la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~-~-~~~-- 143 (519)
.+.++..++|+|||+|.=+.. +.+. ...+.++||+| ++++.+.+.+....++. .+.-+.+|..+. . ++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPE 152 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccc
Confidence 345677999999999964332 2222 23479999999 79999988887444443 234478877653 1 211
Q ss_pred CCceeeEEEE--eccccccccchhHHHHHHHHhc-ccCcCeEEEcc
Q psy14674 144 GIQKVDIIIS--EWMGYCLFYESMLDTVLYARDK-WLATNGLLFPD 186 (519)
Q Consensus 144 ~~~~~D~Ivs--~~~~~~l~~e~~l~~~l~~~~r-~LkpgG~lip~ 186 (519)
......+++. +.++++-. .....++..+++ .|+|||.++..
T Consensus 153 ~~~~~r~~~flGSsiGNf~~--~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSR--PEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred ccCCccEEEEeCccccCCCH--HHHHHHHHHHHHhhCCCCCEEEEe
Confidence 1133566654 22333222 335567888888 99999988753
No 248
>PHA01634 hypothetical protein
Probab=97.33 E-value=0.00079 Score=57.47 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=56.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..++++|+|||++-|..+++++-.||++|+++|++ .+.+..+++++.+.+-++..-.. +++ ..-+.||+.+.+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~--~~Y~~~Di~~iD 99 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWN--GEYEDVDIFVMD 99 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----ccc--ccCCCcceEEEE
Confidence 35789999999999999999999999999999999 48899999988876544322221 222 122678888754
Q ss_pred c
Q psy14674 155 W 155 (519)
Q Consensus 155 ~ 155 (519)
.
T Consensus 100 C 100 (156)
T PHA01634 100 C 100 (156)
T ss_pred c
Confidence 3
No 249
>KOG3178|consensus
Probab=97.33 E-value=0.0011 Score=66.56 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=72.9
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~ 157 (519)
-...+|+|.|.|.++..+... ..+|-+++.. +.+..++.... .| |+.+-+|+..- .|. -|+|+.-|+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~----~daI~mkWiL 246 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPK----GDAIWMKWIL 246 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCC----cCeEEEEeec
Confidence 378999999999988877774 5579999998 65555554443 33 78888888774 563 5799999998
Q ss_pred cccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 158 YCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 158 ~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|++..+ ....+++.+...|+|||.++
T Consensus 247 hdwtDe-dcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 247 HDWTDE-DCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred ccCChH-HHHHHHHHHHHhCCCCCEEE
Confidence 877665 46788999999999999776
No 250
>KOG1331|consensus
Probab=97.28 E-value=0.00013 Score=71.07 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=77.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
...+..++|+|||.|-... ..+...++|+|.+ ..+..|++. | ...+..+|+..++.+. ..||.+++.
T Consensus 43 ~~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~--~s~d~~lsi 110 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFRE--ESFDAALSI 110 (293)
T ss_pred cCCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCC--Cccccchhh
Confidence 3458899999999996532 1244579999999 677777653 1 1257778888776665 899999999
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.+.|++........+++++.|.|+|||.++.
T Consensus 111 avihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 111 AVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 9999998888888899999999999998763
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.19 E-value=0.002 Score=60.70 Aligned_cols=106 Identities=26% Similarity=0.344 Sum_probs=80.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..+.++.||||--|++..++.+.+ +..+++.|++ ..++.|.+++.++++.+++++..+|.... +.. ...+|+|+..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~-l~~-~d~~d~ivIA 92 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV-LEL-EDEIDVIVIA 92 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc-cCc-cCCcCEEEEe
Confidence 356669999999999999999874 7789999999 58999999999999999999999998653 222 1579999887
Q ss_pred ccccccccchhHHHHHHHHhcccCc--CeEEEccCCc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLAT--NGLLFPDKAS 189 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~Lkp--gG~lip~~~~ 189 (519)
.||-.+ ...++++....|+. .=++-|+..+
T Consensus 93 GMGG~l-----I~~ILee~~~~l~~~~rlILQPn~~~ 124 (226)
T COG2384 93 GMGGTL-----IREILEEGKEKLKGVERLILQPNIHT 124 (226)
T ss_pred CCcHHH-----HHHHHHHhhhhhcCcceEEECCCCCH
Confidence 775432 45566666666653 3333355544
No 252
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.17 E-value=0.0026 Score=62.75 Aligned_cols=107 Identities=23% Similarity=0.244 Sum_probs=64.6
Q ss_pred CCEEEEECCcccH-HHHHHHHc-C-CCEEEEEech-HHHHHHHHHHH-HCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 79 GKIVLDIGCGTGI-LSMFAAKS-G-AARVIGIECS-NIVEYAKEIVD-KNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 79 ~~~VLDiGcGtG~-ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
+++|+=||||.=- .++.+++. + ...|.++|++ ++++.|++.++ ..++..+++++.+|..+..... ..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl--~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL--KEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc--ccCCEEEE
Confidence 4699999999764 45566654 3 3479999999 69999999988 6788889999999997654333 68999976
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
..+-. ........++..+.+.++||+.++...+.
T Consensus 199 AalVg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 199 AALVG--MDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -TT-S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred hhhcc--cccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 44311 11234678899999999999999877555
No 253
>KOG3201|consensus
Probab=97.11 E-value=0.00024 Score=63.16 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=74.2
Q ss_pred HHHHhcCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCC--cEEEEEceeeEeecC
Q psy14674 68 NSMYHNKHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSD--VVTILKGKVEEVELP 142 (519)
Q Consensus 68 ~ai~~~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~--~i~~~~~d~~~~~~~ 142 (519)
-.++.......|.+||++|.| +|..++++|.. +...|.-.|-+ +.++-.++....|.... ++.++.-+...-...
T Consensus 19 ~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq 98 (201)
T KOG3201|consen 19 WTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQ 98 (201)
T ss_pred HHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHH
Confidence 345555566678899999999 56666676654 67789999999 58888887776663321 122222222111111
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
.....||+|+|.-. +...+..+++.+.+.++|+|.|..+
T Consensus 99 ~eq~tFDiIlaADC---lFfdE~h~sLvdtIk~lL~p~g~Al 137 (201)
T KOG3201|consen 99 QEQHTFDIILAADC---LFFDEHHESLVDTIKSLLRPSGRAL 137 (201)
T ss_pred HhhCcccEEEeccc---hhHHHHHHHHHHHHHHHhCccccee
Confidence 11158999988433 4445567788899999999999755
No 254
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.06 E-value=0.003 Score=63.31 Aligned_cols=114 Identities=15% Similarity=0.150 Sum_probs=81.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHcC-CCEEEEEech-HHHHHHHHHH--H---HCCC-CCcEEEEEceeeEeecCCCCcee
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIV--D---KNNL-SDVVTILKGKVEEVELPFGIQKV 148 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~A~~~~--~---~~~~-~~~i~~~~~d~~~~~~~~~~~~~ 148 (519)
....+||-+|.|.|.-...+.+.+ ..+++-||++ +|++.++++. + ++.+ ..|++++..|+.++- ....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl-r~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL-RTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH-Hhhcccc
Confidence 445699999999999999999986 8899999999 5999998432 2 2223 357999999988762 2222689
Q ss_pred eEEEEeccccccccch--hHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674 149 DIIISEWMGYCLFYES--MLDTVLYARDKWLATNGLLFPDKASLF 191 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~--~l~~~l~~~~r~LkpgG~lip~~~~~~ 191 (519)
|+||.+...-.-.... .-..+..-+.+.|+++|+++....+-|
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 9999876432111111 112334455789999999998887744
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0046 Score=57.32 Aligned_cols=105 Identities=16% Similarity=0.236 Sum_probs=72.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~ 150 (519)
..+.+|.+||=+|+-+|......+.- |...+||||.| .+.+..-..+++. ++|-.+.+|+.... ...--+.+|+
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccE
Confidence 46788999999999999888888775 66789999999 4333333333221 34677888886431 0001167999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
|+.+.. .....+-+...+..+||+||.++..
T Consensus 149 iy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 149 IYQDVA-----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEEecC-----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 998765 2234556677888999999976633
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.03 E-value=0.0027 Score=55.98 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=55.9
Q ss_pred EEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccccccccch----hHH---HHHHHHh
Q psy14674 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYES----MLD---TVLYARD 174 (519)
Q Consensus 103 ~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~----~l~---~~l~~~~ 174 (519)
+|+|.|+. ++++.+++++++.++.+++++++.+-+++......+++|+++.+. ||...... ..+ ..++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 699999999999999999999998887764221114899999864 44443321 111 2355566
Q ss_pred cccCcCeEEEccC
Q psy14674 175 KWLATNGLLFPDK 187 (519)
Q Consensus 175 r~LkpgG~lip~~ 187 (519)
++|+|||+++.-.
T Consensus 80 ~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 80 ELLKPGGIITIVV 92 (140)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhhccCCEEEEEE
Confidence 8999999987443
No 257
>KOG4589|consensus
Probab=96.87 E-value=0.0018 Score=59.06 Aligned_cols=100 Identities=24% Similarity=0.279 Sum_probs=62.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEc-eeeEe--------ecCC
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG-KVEEV--------ELPF 143 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~--------~~~~ 143 (519)
-+.++.+|||+||..|.++..+.+. +.+.|.|||+-... ... .++++++ |+.+. .+|.
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PPE-GATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CCC-CcccccccccCCHHHHHHHHHhCCC
Confidence 4578999999999999999998887 56789999986311 111 1455555 55442 2454
Q ss_pred CCceeeEEEEecccc-----ccccchhHH---HHHHHHhcccCcCeEEEccC
Q psy14674 144 GIQKVDIIISEWMGY-----CLFYESMLD---TVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~-----~l~~e~~l~---~~l~~~~r~LkpgG~lip~~ 187 (519)
.++|+|+|+.... ...+....+ +++.-....++|+|.++.-.
T Consensus 135 --r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 135 --RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred --CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 7899999976411 112222111 12222236778999888543
No 258
>KOG4058|consensus
Probab=96.79 E-value=0.004 Score=54.66 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
..-.+..+.+|+|+|.|.+-+.+++.|....+|+|+++ ++.+++-..-..|...+..|...|+-...+.+ -.+=+|+
T Consensus 68 l~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d--y~~vviF 145 (199)
T KOG4058|consen 68 LRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD--YRNVVIF 145 (199)
T ss_pred ccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc--cceEEEe
Confidence 33455568999999999999999999988999999997 88888888878888888899998888776653 2333332
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
..|+++..+-..+..-|..|..++-.
T Consensus 146 --------gaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 146 --------GAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred --------ehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 22344444445554456666666633
No 259
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.74 E-value=0.0038 Score=58.82 Aligned_cols=86 Identities=22% Similarity=0.174 Sum_probs=65.0
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CCceeeEEEEecccc
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GIQKVDIIISEWMGY 158 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~ 158 (519)
.++|||||=+...... ..+.-.|++||+++ ..-.+.+.|+.+.++|. ..++||+|+++.+..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986544322 33444799999973 01356788888887763 237999999999887
Q ss_pred ccccchhHHHHHHHHhcccCcCeE
Q psy14674 159 CLFYESMLDTVLYARDKWLATNGL 182 (519)
Q Consensus 159 ~l~~e~~l~~~l~~~~r~LkpgG~ 182 (519)
+.......-.++..+.++|+|+|.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCc
Confidence 777666677788889999999998
No 260
>KOG2352|consensus
Probab=96.69 E-value=0.011 Score=61.95 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=75.8
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccc
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGY 158 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~ 158 (519)
-++|-+|||.-.++..+-+.|...|+.+|.|+ .++.+....... ..-+.+...|+..+.+++ ++||+|+...-..
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fed--ESFdiVIdkGtlD 125 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFED--ESFDIVIDKGTLD 125 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCC--cceeEEEecCccc
Confidence 38999999999999999999999999999995 555544433211 123789999999888887 9999999865433
Q ss_pred cc-ccch------hHHHHHHHHhcccCcCeEEE
Q psy14674 159 CL-FYES------MLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 159 ~l-~~e~------~l~~~l~~~~r~LkpgG~li 184 (519)
.+ ..+. .....+..+.|+|++||+++
T Consensus 126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 33 2222 23456788899999999866
No 261
>KOG0822|consensus
Probab=96.62 E-value=0.0022 Score=67.23 Aligned_cols=78 Identities=21% Similarity=0.329 Sum_probs=61.1
Q ss_pred eEEEEeecceeeEEEEEEEEEEcCCCceeEEecCCCCC---CCCceeEEEeecccccccCCCEEEEEEEEEeCCCCCcee
Q psy14674 419 FTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAH---YTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDL 495 (519)
Q Consensus 419 f~~~~~~~~~~~g~~~wFd~~F~~~~~~v~lsT~P~~~---~THWkQt~~~l~~~~~v~~g~~i~g~~~~~~~~~~~r~l 495 (519)
.+|++++++.+|||++|||...-+ .|.||+-|... -+-|-..+|.+++|+.|.+|+.|+-.+-=+- -..
T Consensus 544 ~eF~~~~~~~lHGFaGYFd~~LYk---dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~-----d~~ 615 (649)
T KOG0822|consen 544 VEFKVKSNGVLHGFAGYFDAVLYK---DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCV-----DST 615 (649)
T ss_pred EEEecCCCceEeecchhhhhhhhh---eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEe-----CCc
Confidence 467778899999999999998765 39999988433 5679999999999999999999987665332 223
Q ss_pred EEEEEEEEc
Q psy14674 496 DFTVEVNFK 504 (519)
Q Consensus 496 ~i~~~~~~~ 504 (519)
.|=.+|.++
T Consensus 616 kVWYEW~v~ 624 (649)
T KOG0822|consen 616 KVWYEWSVE 624 (649)
T ss_pred eeEEEEEee
Confidence 455666665
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.62 E-value=0.0079 Score=56.63 Aligned_cols=123 Identities=18% Similarity=0.269 Sum_probs=63.1
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----c-CCCEEEEEech-H-HHHHHHHHHHHCCCCCc
Q psy14674 56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK----S-GAARVIGIECS-N-IVEYAKEIVDKNNLSDV 128 (519)
Q Consensus 56 ~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~----~-g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~ 128 (519)
+++......+|.+.|.+. +++.|+++|.-.|.-+.+.|. . +.++|+|||+. . ....| .+...+.++
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a---~e~hp~~~r 86 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA---IESHPMSPR 86 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G---GGG----TT
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH---HhhccccCc
Confidence 344445566777777653 567999999999876665554 2 46799999996 3 22222 233556678
Q ss_pred EEEEEceeeEeec----CC--CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 129 VTILKGKVEEVEL----PF--GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 129 i~~~~~d~~~~~~----~~--~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|++++||..+... .. ......+|+-+.- -.++..+. .++....++++|+++|.....
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~---H~~~hvl~-eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSS---HTHEHVLA-ELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHHH-HHHHHHHT--TT-EEEETSHH
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCC---ccHHHHHH-HHHHhCccCCCCCEEEEEecc
Confidence 9999999876421 10 0123456655432 12233343 356678999999999866554
No 263
>KOG1227|consensus
Probab=96.54 E-value=0.00093 Score=65.28 Aligned_cols=95 Identities=23% Similarity=0.312 Sum_probs=75.1
Q ss_pred CCCEEEEECCcccHHHH-HHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 78 KGKIVLDIGCGTGILSM-FAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~-~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+..|.|+=+|-|++++ ++..+||+.|+|+|.++ .++..+++++.|+..++..++.+|.....+. ...|-|....
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~---~~AdrVnLGL 270 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR---LRADRVNLGL 270 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc---ccchheeecc
Confidence 45799999999999999 89999999999999995 9999999999999988888888888765433 6788886544
Q ss_pred cccccccchhHHHHHHHHhcccCcCeE
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGL 182 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~ 182 (519)
+ ...++.+.... ++|||.|-
T Consensus 271 l---PSse~~W~~A~----k~Lk~egg 290 (351)
T KOG1227|consen 271 L---PSSEQGWPTAI----KALKPEGG 290 (351)
T ss_pred c---cccccchHHHH----HHhhhcCC
Confidence 3 44455554433 56777543
No 264
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.54 E-value=0.0069 Score=62.88 Aligned_cols=104 Identities=21% Similarity=0.205 Sum_probs=74.3
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCC-cEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSD-VVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
.+-+|||.=+|+|.=++..++. +..+|++-|+| ++++.+++|++.|++.+ ++++.+.|+..+-. ...+.||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY-SRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh-hccccCCEEEe
Confidence 4568999999999988866655 67899999999 69999999999999998 79999999887531 11279999977
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++|. ...++++..+.++.||++......
T Consensus 128 DPfGS-------p~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 128 DPFGS-------PAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp --SS---------HHHHHHHHHHEEEEEEEEEEE--
T ss_pred CCCCC-------ccHhHHHHHHHhhcCCEEEEeccc
Confidence 77643 344566666889999998866544
No 265
>KOG3987|consensus
Probab=96.52 E-value=0.00084 Score=62.10 Aligned_cols=95 Identities=23% Similarity=0.244 Sum_probs=63.0
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe-c
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE-W 155 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~-~ 155 (519)
.+.++||+|+|.|-++..++.. ..+|+|.|+| .|....+++ +. .++. ..+..-. +-++|+|.|- .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~--~~ew~~t--~~k~dli~clNl 178 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLT--EIEWLQT--DVKLDLILCLNL 178 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceee--ehhhhhc--CceeehHHHHHH
Confidence 3579999999999999988776 5589999999 587765543 22 1211 1111111 1579999873 3
Q ss_pred cccccccchhHHHHHHHHhcccCc-CeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLAT-NGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~Lkp-gG~lip~~~~ 189 (519)
+..+. ..-.+++.++.+|+| +|.+|....-
T Consensus 179 LDRc~----~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 179 LDRCF----DPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred HHhhc----ChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 33322 344667888889998 8888766544
No 266
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.50 E-value=0.013 Score=58.80 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=63.7
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCC-CCc
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPF-GIQ 146 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~~~ 146 (519)
......+|..++|.=+|.|.-+..+++. +..+|+|+|.+ .+++.|+++++.. .+++++++++..++. +.. +..
T Consensus 14 ~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~ 91 (305)
T TIGR00006 14 EGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVT 91 (305)
T ss_pred HhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCC
Confidence 3345667889999999999999988876 44799999999 6999999988653 468999999988762 111 125
Q ss_pred eeeEEEEec
Q psy14674 147 KVDIIISEW 155 (519)
Q Consensus 147 ~~D~Ivs~~ 155 (519)
++|.|+.+.
T Consensus 92 ~vDgIl~DL 100 (305)
T TIGR00006 92 KIDGILVDL 100 (305)
T ss_pred cccEEEEec
Confidence 799998865
No 267
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.47 E-value=0.0062 Score=58.53 Aligned_cols=88 Identities=20% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHhcCCCCCCC--EEEEECCcccHHHHHHHHcCCCEEEEEechH-H---HHHHHHHHHHCCCC-----CcEEEEEceeeE
Q psy14674 70 MYHNKHLFKGK--IVLDIGCGTGILSMFAAKSGAARVIGIECSN-I---VEYAKEIVDKNNLS-----DVVTILKGKVEE 138 (519)
Q Consensus 70 i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~---~~~A~~~~~~~~~~-----~~i~~~~~d~~~ 138 (519)
+.....+.++. +|||.-+|-|.-++.+|..|. +|+++|.|+ + ++.+-++.....-. .+|+++++|..+
T Consensus 65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~ 143 (234)
T PF04445_consen 65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE 143 (234)
T ss_dssp HHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred HHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence 33334555554 999999999999998888887 899999995 3 33343444433222 479999999988
Q ss_pred eecCCCCceeeEEEEeccccc
Q psy14674 139 VELPFGIQKVDIIISEWMGYC 159 (519)
Q Consensus 139 ~~~~~~~~~~D~Ivs~~~~~~ 159 (519)
+- .....+||+|+.++|...
T Consensus 144 ~L-~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 144 YL-RQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp HC-CCHSS--SEEEE--S---
T ss_pred HH-hhcCCCCCEEEECCCCCC
Confidence 52 122379999999998443
No 268
>KOG2798|consensus
Probab=96.43 E-value=0.03 Score=55.36 Aligned_cols=119 Identities=20% Similarity=0.205 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCCCC-------CCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-----
Q psy14674 62 RTMTYRNSMYHNKHLFK-------GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV----- 128 (519)
Q Consensus 62 r~~~y~~ai~~~~~~~~-------~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~----- 128 (519)
|...|...|.+...+.+ ..+||--|||.|.|+.-+|..|. ++-|=|.| -|+-...=.+..-..++.
T Consensus 127 Rd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYP 205 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYP 205 (369)
T ss_pred hhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEe
Confidence 44455544443333333 35899999999999999999987 67777888 454332222211111111
Q ss_pred ----------------------------------EEEEEceeeEee-cCCCCceeeEEEEeccccccccchhHHHHHHHH
Q psy14674 129 ----------------------------------VTILKGKVEEVE-LPFGIQKVDIIISEWMGYCLFYESMLDTVLYAR 173 (519)
Q Consensus 129 ----------------------------------i~~~~~d~~~~~-~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~ 173 (519)
.....||+.+.- .+...+.||+|+..++ +.-....-..++.+
T Consensus 206 fIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF---IDTa~NileYi~tI 282 (369)
T KOG2798|consen 206 FIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF---IDTAHNILEYIDTI 282 (369)
T ss_pred eeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE---eechHHHHHHHHHH
Confidence 112234444431 1212247999988765 44334455668889
Q ss_pred hcccCcCeEEE
Q psy14674 174 DKWLATNGLLF 184 (519)
Q Consensus 174 ~r~LkpgG~li 184 (519)
.+.|||||+.+
T Consensus 283 ~~iLk~GGvWi 293 (369)
T KOG2798|consen 283 YKILKPGGVWI 293 (369)
T ss_pred HHhccCCcEEE
Confidence 99999999877
No 269
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.35 E-value=0.0057 Score=56.31 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=74.4
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEechHHHHHH-------HHHHHHCCCCCcEEEEEceeeEee
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECSNIVEYA-------KEIVDKNNLSDVVTILKGKVEEVE 140 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s~~~~~A-------~~~~~~~~~~~~i~~~~~d~~~~~ 140 (519)
++....+.+|.+|+|+=-|.|.++..++.. | ...||+.-..+....+ +...++.... +++.+-.....+.
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~ 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG 118 (238)
T ss_pred eeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC
Confidence 334467899999999999999999998886 3 4478887665321111 1111222222 2566666665555
Q ss_pred cCCCCceeeEEEEeccccccc----cchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLF----YESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~----~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+ ++.|++......|.++ +......+..++.+.|||||.++.....
T Consensus 119 ~p---q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 119 AP---QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred CC---CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 44 6788887654433332 2345677788899999999988754433
No 270
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.31 E-value=0.059 Score=51.80 Aligned_cols=108 Identities=15% Similarity=0.214 Sum_probs=62.6
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CC
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GI 145 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~ 145 (519)
+++.......|++||-+|-+- ..|+.+|.. ..++|+.+|++ .+++..++.+++.|++ |+.++.|+.+ ++|. -.
T Consensus 35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~ 110 (243)
T PF01861_consen 35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD-PLPEELR 110 (243)
T ss_dssp HHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTS
T ss_pred HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc-cCCHHHh
Confidence 333445667899999999776 444444432 45699999999 5999999999999987 9999999987 4443 24
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCe-EEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNG-LLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG-~li 184 (519)
++||++++++... ..-+..++......||..| ..+
T Consensus 111 ~~fD~f~TDPPyT----~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 111 GKFDVFFTDPPYT----PEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp S-BSEEEE---SS----HHHHHHHHHHHHHTB-STT-EEE
T ss_pred cCCCEEEeCCCCC----HHHHHHHHHHHHHHhCCCCceEE
Confidence 7999999998632 2345666666667787655 444
No 271
>KOG1122|consensus
Probab=96.29 E-value=0.025 Score=58.08 Aligned_cols=117 Identities=12% Similarity=0.100 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
....+|.+|||+.+-.|.=+.++|.. +-+.|+|.|.+ +-+...+.++...|+.+ ..+...|..+++-..-.++||-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccce
Confidence 45678999999999999755555543 45689999999 68889999999999876 4556666665421111157999
Q ss_pred EEEeccccc--cc-----------------cchhHHHHHHHHhcccCcCeEEEccCCccc
Q psy14674 151 IISEWMGYC--LF-----------------YESMLDTVLYARDKWLATNGLLFPDKASLF 191 (519)
Q Consensus 151 Ivs~~~~~~--l~-----------------~e~~l~~~l~~~~r~LkpgG~lip~~~~~~ 191 (519)
|+.+..-.. +. +......++.....++++||+++-++|++.
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 987553222 11 112334566666689999999999999843
No 272
>KOG2920|consensus
Probab=96.09 E-value=0.006 Score=59.70 Aligned_cols=112 Identities=23% Similarity=0.380 Sum_probs=64.6
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHH-------HHHHHH--HCCCCCcEEEEEceeeEeecCC
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEY-------AKEIVD--KNNLSDVVTILKGKVEEVELPF 143 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~-------A~~~~~--~~~~~~~i~~~~~d~~~~~~~~ 143 (519)
.-...+++|||+|||+|..++.+...|+..+...|.+ +.++. ++-.+. .+....-..+......+..+-.
T Consensus 112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~ 191 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNH 191 (282)
T ss_pred heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhh
Confidence 4457899999999999999999999887889999988 54421 000000 1111111222222111211110
Q ss_pred CCc--eeeEEEEeccccccccchhHHHH-HHHHhcccCcCeEEEccCCc
Q psy14674 144 GIQ--KVDIIISEWMGYCLFYESMLDTV-LYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 144 ~~~--~~D~Ivs~~~~~~l~~e~~l~~~-l~~~~r~LkpgG~lip~~~~ 189 (519)
.+ +||+|.+.-..+.. ..++.+ ...+..+++++|+++...-.
T Consensus 192 -t~~~~ydlIlsSetiy~~---~~~~~~~~~~r~~l~~~D~~~~~aAK~ 236 (282)
T KOG2920|consen 192 -TERTHYDLILSSETIYSI---DSLAVLYLLHRPCLLKTDGVFYVAAKK 236 (282)
T ss_pred -ccccchhhhhhhhhhhCc---chhhhhHhhhhhhcCCccchhhhhhHh
Confidence 03 78988775553333 334444 55566788999987644433
No 273
>KOG3115|consensus
Probab=96.08 E-value=0.014 Score=54.15 Aligned_cols=61 Identities=26% Similarity=0.399 Sum_probs=45.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCC------CCcEEEEEceeeE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNL------SDVVTILKGKVEE 138 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~------~~~i~~~~~d~~~ 138 (519)
+.-.+.|||||-|.+.+.++.. +..-+.|+|+- ...++.++++++... -.++.+...++..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk 128 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK 128 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence 4457999999999999998877 66689999998 688888888766541 1236666665544
No 274
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.00 E-value=0.043 Score=53.77 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=66.9
Q ss_pred CEEEEECCccc--HHHHHHHHc--CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee----------cCCC
Q psy14674 80 KIVLDIGCGTG--ILSMFAAKS--GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE----------LPFG 144 (519)
Q Consensus 80 ~~VLDiGcGtG--~ls~~la~~--g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 144 (519)
...||||||-- ......|+. +..+|+-||..+ .+..++..+..+.- .+..++++|+.+.. +-+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 58999999943 234445543 667999999997 78889988877642 35889999987741 1111
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.++=+++. .+.|++..+.....++..+...|.||.+++.+..+
T Consensus 149 ~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 149 DRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp TS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 244555544 45667777677889999999999999999988877
No 275
>KOG2793|consensus
Probab=95.52 E-value=0.056 Score=52.46 Aligned_cols=102 Identities=24% Similarity=0.244 Sum_probs=60.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHH-----HHCCCCCcEEEEEceeeEeec-CCCCce-eeE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIV-----DKNNLSDVVTILKGKVEEVEL-PFGIQK-VDI 150 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~-----~~~~~~~~i~~~~~d~~~~~~-~~~~~~-~D~ 150 (519)
+..+||++|+|+|..++.+|......|.-.|....++....+. +.+++...+.+..-+..+... ...... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4568999999999999988886555999999885433333332 333333334444333322110 000133 899
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeE
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGL 182 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~ 182 (519)
|++.-+. ..++..+.++..+..+|..+|.
T Consensus 166 ilasDvv---y~~~~~e~Lv~tla~ll~~~~~ 194 (248)
T KOG2793|consen 166 ILASDVV---YEEESFEGLVKTLAFLLAKDGT 194 (248)
T ss_pred EEEeeee---ecCCcchhHHHHHHHHHhcCCe
Confidence 9986553 3334455556666677777773
No 276
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.032 Score=55.89 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeE--eecCCCCceeeE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE--VELPFGIQKVDI 150 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~~~D~ 150 (519)
..+..+++||+|.|.|.-...+-.. --..++-+|.|+++...-.-+..|-...+...-..|+.. +++|.. ..|++
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl 188 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTL 188 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeeh
Confidence 4567788999999998765544433 245788899997665555555554433322333333332 233321 45777
Q ss_pred EEEe-ccccccccchhHHHHHHHHhcccCcCeEEE-ccCCc
Q psy14674 151 IISE-WMGYCLFYESMLDTVLYARDKWLATNGLLF-PDKAS 189 (519)
Q Consensus 151 Ivs~-~~~~~l~~e~~l~~~l~~~~r~LkpgG~li-p~~~~ 189 (519)
++.. -+.+ ...+..+...++.+..++.|||.++ .+.++
T Consensus 189 ~i~~~eLl~-d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 189 AIVLDELLP-DGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhhcc-ccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 6541 1111 1223334446777778999999877 44444
No 277
>KOG1596|consensus
Probab=95.46 E-value=0.041 Score=52.39 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=66.0
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc--CCCEEEEEechH-----HHHHHHHHHHHCCCCCcEEEEEceeeEee-cCC
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSN-----IVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPF 143 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s~-----~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 143 (519)
.+..+.+|.+||=+|+++|..-...+.. +..-|||||.|+ ++..|+++ . +|-.+..|+.... ..-
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------t-NiiPIiEDArhP~KYRm 222 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------T-NIIPIIEDARHPAKYRM 222 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------C-CceeeeccCCCchheee
Confidence 3567899999999999999877777665 345799999983 34444433 2 2555656665421 000
Q ss_pred CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
.-.-+|+|+++.. .. .....+.-....+||+||.++.+.
T Consensus 223 lVgmVDvIFaDva----qp-dq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 223 LVGMVDVIFADVA----QP-DQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeeeEEEEeccCC----Cc-hhhhhhhhhhhhhhccCCeEEEEE
Confidence 1146899988764 11 222333334457999999988554
No 278
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.40 E-value=0.064 Score=51.86 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=50.9
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
.+.+..+|+|||||.=-+++..... +...++|+|++ .+++...+.....+.. .++...|...-. +. +..|+.+
T Consensus 102 ~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~-~~--~~~DlaL 176 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP-PK--EPADLAL 176 (251)
T ss_dssp CS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH-TT--SEESEEE
T ss_pred cCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC-CC--CCcchhh
Confidence 3455789999999998888865544 33499999999 6999999999988876 455555655432 33 7899996
Q ss_pred E
Q psy14674 153 S 153 (519)
Q Consensus 153 s 153 (519)
.
T Consensus 177 l 177 (251)
T PF07091_consen 177 L 177 (251)
T ss_dssp E
T ss_pred H
Confidence 5
No 279
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.34 E-value=0.044 Score=55.65 Aligned_cols=89 Identities=28% Similarity=0.344 Sum_probs=59.1
Q ss_pred CCCCCCCEEEEECCccc--HHHHHHHH-cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-eeEe-ecCCCCce
Q psy14674 74 KHLFKGKIVLDIGCGTG--ILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-VEEV-ELPFGIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG--~ls~~la~-~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~~~~-~~~~~~~~ 147 (519)
....+|++|+-+|+| | .++..+|+ .| .+|+++|.| +-++.|++.-+. .++... .... ... +.
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~---~~ 229 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVK---EI 229 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhH---hh
Confidence 467889999999998 6 56777777 47 499999999 578888875332 344433 1111 122 34
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+|+.... ... +....+.|++||.++
T Consensus 230 ~d~ii~tv~------~~~----~~~~l~~l~~~G~~v 256 (339)
T COG1064 230 ADAIIDTVG------PAT----LEPSLKALRRGGTLV 256 (339)
T ss_pred CcEEEECCC------hhh----HHHHHHHHhcCCEEE
Confidence 999986432 112 333347899999988
No 280
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.23 E-value=0.03 Score=58.99 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=65.3
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEech---HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEEEEec
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS---NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDIIISEW 155 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s---~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~Ivs~~ 155 (519)
..|+|..+|.|.++..+...+. -|.-|=+. +.+.. +-+.|+ |-+.+.=.+.+. .| ..||+|.++.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~V-WVMNVVP~~~~ntL~v----IydRGL---IG~yhDWCE~fsTYP---RTYDLlHA~~ 435 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPV-WVMNVVPVSGPNTLPV----IYDRGL---IGVYHDWCEAFSTYP---RTYDLLHADG 435 (506)
T ss_pred eeeeeecccccHHHHHhccCCc-eEEEecccCCCCcchh----hhhccc---chhccchhhccCCCC---cchhheehhh
Confidence 4899999999999998887753 23222222 22222 223344 333332233332 33 8999999987
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.......-.+..++-++.|+|+|||.++.....
T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 7655555556788899999999999999976544
No 281
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.85 E-value=0.04 Score=54.86 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=51.9
Q ss_pred EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
+|+|+.||.|.++..+.++|...|.++|++ .+++..+++... .++.+|+.++........+|+++..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCC
Confidence 689999999999999999999889999999 577766665422 266778887643210257999998653
No 282
>KOG0024|consensus
Probab=94.79 E-value=0.073 Score=53.10 Aligned_cols=98 Identities=26% Similarity=0.292 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEcee--eEe----ecCCC
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV--EEV----ELPFG 144 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~--~~~----~~~~~ 144 (519)
.....|.+||-+|+|. |.+++..|++ |+++|+.+|++ +-++.|++ + |... +....... .++ .-..+
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhcc
Confidence 5678899999999995 7888888887 99999999999 68999988 2 3221 11111111 111 11111
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
...+|+.+...- .+..+++.-..|++||.++.
T Consensus 240 ~~~~d~~~dCsG---------~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 240 KKQPDVTFDCSG---------AEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred ccCCCeEEEccC---------chHHHHHHHHHhccCCEEEE
Confidence 145888875332 22334444578899998663
No 283
>KOG2671|consensus
Probab=94.53 E-value=0.024 Score=56.70 Aligned_cols=81 Identities=28% Similarity=0.269 Sum_probs=64.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHH-------HHHHHHHHCCCCC-cEEEEEceeeEeecCCC
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVE-------YAKEIVDKNNLSD-VVTILKGKVEEVELPFG 144 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~-------~A~~~~~~~~~~~-~i~~~~~d~~~~~~~~~ 144 (519)
+...+|+.|.|--.|||.+...+|..|+ .|+|.|++ .++. -.+.+.+++|... -+.++.+|...-++..
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rs- 281 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRS- 281 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhh-
Confidence 4578999999999999999999999988 99999999 6665 2466778888543 3567888887655543
Q ss_pred CceeeEEEEecc
Q psy14674 145 IQKVDIIISEWM 156 (519)
Q Consensus 145 ~~~~D~Ivs~~~ 156 (519)
...||.|||++.
T Consensus 282 n~~fDaIvcDPP 293 (421)
T KOG2671|consen 282 NLKFDAIVCDPP 293 (421)
T ss_pred cceeeEEEeCCC
Confidence 368999999875
No 284
>KOG1099|consensus
Probab=94.50 E-value=0.037 Score=52.34 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=62.3
Q ss_pred CEEEEECCcccHHHHHHHHc--------CC--CEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeec------CC
Q psy14674 80 KIVLDIGCGTGILSMFAAKS--------GA--ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL------PF 143 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~--------g~--~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~------~~ 143 (519)
++|+|+.+..|.++..+++. +. +++++||+.+|+-. .+ |.-+++|++...- -.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----------~G-V~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----------EG-VIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----------Cc-eEEeecccCCHhHHHHHHHHh
Confidence 68999999999999988875 12 13999999876543 22 7778888876421 01
Q ss_pred CCceeeEEEEecccc----ccccc----hhHHHHHHHHhcccCcCeEEE
Q psy14674 144 GIQKVDIIISEWMGY----CLFYE----SMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~----~l~~e----~~l~~~l~~~~r~LkpgG~li 184 (519)
+.++.|+|||+..-. |-..| +.+-+.+.-...+|||||.|+
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 226899999976421 11111 122233444468999999998
No 285
>KOG1253|consensus
Probab=94.30 E-value=0.017 Score=60.42 Aligned_cols=105 Identities=23% Similarity=0.224 Sum_probs=82.8
Q ss_pred CCCEEEEECCcccHHHHHHHHc--CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cCCCCceeeEEE
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LPFGIQKVDIII 152 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~~~~D~Iv 152 (519)
++-+|||.=|++|+-++..|+. |..+|++-|.+ ..++..+++++.|+..+.++..+.|+..+- .+.-...||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 4568999999999999877775 78899999999 699999999999999998999998887652 221126899997
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.++.|. ...+|+...+.++.||++......
T Consensus 189 LDPyGs-------~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 LDPYGS-------PSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cCCCCC-------ccHHHHHHHHHhhcCCEEEEEecc
Confidence 766543 344566666888999999876655
No 286
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.25 E-value=0.27 Score=53.11 Aligned_cols=82 Identities=20% Similarity=0.117 Sum_probs=58.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-C----CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC---CCCc
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS-G----AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP---FGIQ 146 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~~ 146 (519)
..+..+|.|-.||+|.+...+++. + ....+|.|++ .....|+.++--+|+...+....+|...-+.. ...+
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~ 263 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKG 263 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcc
Confidence 356679999999999876655544 2 2579999999 69999999998888764345555554433222 1236
Q ss_pred eeeEEEEeccc
Q psy14674 147 KVDIIISEWMG 157 (519)
Q Consensus 147 ~~D~Ivs~~~~ 157 (519)
+||.|++++..
T Consensus 264 ~~D~viaNPPf 274 (489)
T COG0286 264 KFDFVIANPPF 274 (489)
T ss_pred ceeEEEeCCCC
Confidence 79999998753
No 287
>PTZ00357 methyltransferase; Provisional
Probab=93.97 E-value=0.32 Score=53.12 Aligned_cols=61 Identities=21% Similarity=0.276 Sum_probs=46.2
Q ss_pred eceEEEEeecceeeEEEEEEEEEEcCC--CceeEEecCCCCC---CCCceeEEEeec---ccccccCCC
Q psy14674 417 APFTLQVRRNDYVQALVTFFSVEFSKC--HKRIGFSTAPEAH---YTHWKQTVFYLN---EHLTVKKGE 477 (519)
Q Consensus 417 ~~f~~~~~~~~~~~g~~~wFd~~F~~~--~~~v~lsT~P~~~---~THWkQt~~~l~---~~~~v~~g~ 477 (519)
+..+|++..++.+|||++|||+..-+. ...|.|||-|... -=-|-...|.|. .+.-++.||
T Consensus 936 a~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq 1004 (1072)
T PTZ00357 936 ASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQ 1004 (1072)
T ss_pred EEEEEecCCCcceeeeeeEEEEEeecCCCccceEeecCCCCCCCCccceeeeEEecCccccceEeeccc
Confidence 456777788999999999999987643 2358899999544 235999999998 565666665
No 288
>KOG1562|consensus
Probab=93.80 E-value=0.16 Score=49.99 Aligned_cols=112 Identities=18% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHH--CCCC-CcEEEEEceeeEe--ecCCCCcee
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDK--NNLS-DVVTILKGKVEEV--ELPFGIQKV 148 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~--~~~~-~~i~~~~~d~~~~--~~~~~~~~~ 148 (519)
+...++||-||-|.|......+++ -...+.-+|+. ..++..++.... .|+. .+|.+.-||...+ ..+. ++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCc
Confidence 456789999999999887777766 35578889999 577777777653 2343 4688888886654 2222 789
Q ss_pred eEEEEeccccccccch-hHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 149 DIIISEWMGYCLFYES-MLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~-~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|+|+.+.-.-....+. ..+.+..-+.+.||+||+++.....
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 9999865432232222 2445667778999999998855444
No 289
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.50 E-value=0.12 Score=43.27 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=27.8
Q ss_pred CCCEEEEECCcccHHHHHHHHcCCCEEEEEech
Q psy14674 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS 110 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s 110 (519)
+.....|||||.|.+...+.+.|. +=+|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 456899999999999999999887 77899974
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.24 E-value=0.26 Score=50.44 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
...++.+||-.|||. |.++..+|++ |+++|+++|.+ +-++.|++ .|....+..-..+..++.... +.+|+|
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~--g~~D~v 239 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEK--GYFDVS 239 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccC--CCCCEE
Confidence 345788999999752 3455555554 77789999998 56666654 343211111111122111111 458988
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
+.. .+. ...+....++|++||.++.
T Consensus 240 id~-~G~--------~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 240 FEV-SGH--------PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred EEC-CCC--------HHHHHHHHHHhhcCCEEEE
Confidence 753 221 1123344578899998873
No 291
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.98 E-value=0.22 Score=50.68 Aligned_cols=102 Identities=25% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 79 GKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
..+|||.=+|||+=++..|.. +..+|+.=|+| ++.+.+++|++.|...+ ..++..|+..+-.. ....||+|=.+++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~-~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHE-LHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHh-cCCCccEEecCCC
Confidence 789999999999988877665 55589999999 59999999999984444 56666777665222 1268999966666
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|. ...++++..+.++.||++-.....
T Consensus 131 GS-------PaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 131 GS-------PAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred CC-------CchHHHHHHHHhhcCCEEEEEecc
Confidence 43 233455556778889988755443
No 292
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.81 E-value=0.11 Score=54.21 Aligned_cols=106 Identities=25% Similarity=0.254 Sum_probs=61.6
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-eeE-e-ecCCCCce
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-VEE-V-ELPFGIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~~~-~-~~~~~~~~ 147 (519)
..+.++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. +. ..+.....+ ..+ + .+.. ...
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~-~~~ 254 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTG-GRG 254 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcC-CCC
Confidence 4567889999999987 7777777776 66679999998 5777777642 21 111111111 100 1 1111 136
Q ss_pred eeEEEEeccccc------------cccchhHHHHHHHHhcccCcCeEEE
Q psy14674 148 VDIIISEWMGYC------------LFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 148 ~D~Ivs~~~~~~------------l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+|+...-+.. +.........+....+.|+++|.++
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv 303 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVS 303 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEE
Confidence 899987432110 0111112334566678999999887
No 293
>KOG2198|consensus
Probab=92.64 E-value=0.48 Score=48.29 Aligned_cols=115 Identities=12% Similarity=0.059 Sum_probs=67.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc---C--CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec------
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS---G--AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL------ 141 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~---g--~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~------ 141 (519)
..+.+|.+|||+.+-.|.=+..+.++ . ...|+|=|.+ .=+...+.......- ..+.+...++...+-
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccC
Confidence 46789999999999999766555554 2 2279998887 322222222222221 224444444443311
Q ss_pred -CCCCceeeEEEEecc--ccccc--c----------------chhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 142 -PFGIQKVDIIISEWM--GYCLF--Y----------------ESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 142 -~~~~~~~D~Ivs~~~--~~~l~--~----------------e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.....||-|+++.. +.... . ....-.++....++||+||.+|-++|+
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 111257999998653 11110 0 011124566667999999999999998
No 294
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.56 E-value=0.72 Score=45.86 Aligned_cols=82 Identities=26% Similarity=0.278 Sum_probs=63.8
Q ss_pred hcCCCCCCCEEEEECCcccHHHHHHHHc-C-CCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--C-CCC
Q psy14674 72 HNKHLFKGKIVLDIGCGTGILSMFAAKS-G-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--P-FGI 145 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~-~~~ 145 (519)
......++...+|.--|.|..+..+... + .++++|+|.+ .+++.|+++....+ ++++++++++.++.. + .+.
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i 94 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGI 94 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCC
Confidence 4466778899999999999999877776 3 4689999999 69999999987755 679999998877621 1 112
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|-|+.+.
T Consensus 95 ~~vDGiL~DL 104 (314)
T COG0275 95 GKVDGILLDL 104 (314)
T ss_pred CceeEEEEec
Confidence 5788887754
No 295
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.50 E-value=0.51 Score=48.36 Aligned_cols=111 Identities=18% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHc------------C-----CCEEEEEech--HHHHHHHHHHHHC----CCCC-cEE
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKS------------G-----AARVIGIECS--NIVEYAKEIVDKN----NLSD-VVT 130 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~------------g-----~~~V~gvD~s--~~~~~A~~~~~~~----~~~~-~i~ 130 (519)
...+.-+|+|+||.+|..++.+... + .-+|+--|.- +.-...+..-... ...+ -+.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~ 92 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS 92 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence 3445569999999999877754422 1 1267888864 3333322221110 0111 012
Q ss_pred EEEceeeEeecCCCCceeeEEEEecccccccc------------------------------------chhHHHHHHHHh
Q psy14674 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCLFY------------------------------------ESMLDTVLYARD 174 (519)
Q Consensus 131 ~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~------------------------------------e~~l~~~l~~~~ 174 (519)
-+-+..-.=-+|. ++.|+++|....|.+.. ..++..+|+++.
T Consensus 93 gvpgSFy~rLfP~--~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra 170 (334)
T PF03492_consen 93 GVPGSFYGRLFPS--NSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA 170 (334)
T ss_dssp EEES-TTS--S-T--T-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCC--CceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2333333223565 89999999665444431 144567889999
Q ss_pred cccCcCeEEEccC
Q psy14674 175 KWLATNGLLFPDK 187 (519)
Q Consensus 175 r~LkpgG~lip~~ 187 (519)
+-|+|||+|+...
T Consensus 171 ~ELv~GG~mvl~~ 183 (334)
T PF03492_consen 171 EELVPGGRMVLTF 183 (334)
T ss_dssp HHEEEEEEEEEEE
T ss_pred heeccCcEEEEEE
Confidence 9999999998544
No 296
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.44 E-value=0.48 Score=48.89 Aligned_cols=96 Identities=30% Similarity=0.344 Sum_probs=58.2
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce-e-eEe-ecCCCCcee
Q psy14674 75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK-V-EEV-ELPFGIQKV 148 (519)
Q Consensus 75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d-~-~~~-~~~~~~~~~ 148 (519)
...++.+|+-+|||. |.++..+++. |+.+|+++|.+ +-++.|++.... +.+.....+ . ... .... ...+
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~-g~g~ 239 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTG-GRGA 239 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhC-CCCC
Confidence 344555999999996 7777766665 89999999999 588888874322 111111111 0 000 1221 1369
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|+++- ..+ ....+....++++|||.++
T Consensus 240 D~vie-~~G--------~~~~~~~ai~~~r~gG~v~ 266 (350)
T COG1063 240 DVVIE-AVG--------SPPALDQALEALRPGGTVV 266 (350)
T ss_pred CEEEE-CCC--------CHHHHHHHHHHhcCCCEEE
Confidence 99974 222 1223445558999999887
No 297
>PRK11524 putative methyltransferase; Provisional
Probab=92.38 E-value=0.26 Score=49.35 Aligned_cols=46 Identities=30% Similarity=0.342 Sum_probs=41.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK 122 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~ 122 (519)
-.+|..|||--||+|..+..+.+.|- +.+|+|++ +.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 46899999999999999999999865 99999999 699999999754
No 298
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=91.85 E-value=0.25 Score=49.73 Aligned_cols=80 Identities=30% Similarity=0.383 Sum_probs=54.8
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--cC-C-CCce
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--LP-F-GIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~~-~-~~~~ 147 (519)
....++...+|.=-|.|..+..+.+. +..+|+|+|.+ ++++.|++++... .+++.++++++.++. +. . ...+
T Consensus 16 L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~ 93 (310)
T PF01795_consen 16 LNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINK 93 (310)
T ss_dssp HT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-
T ss_pred hCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCc
Confidence 34677889999999999999888765 55799999999 6999998876543 678999999987762 11 1 2258
Q ss_pred eeEEEEec
Q psy14674 148 VDIIISEW 155 (519)
Q Consensus 148 ~D~Ivs~~ 155 (519)
+|.|+.+.
T Consensus 94 ~dgiL~DL 101 (310)
T PF01795_consen 94 VDGILFDL 101 (310)
T ss_dssp EEEEEEE-
T ss_pred cCEEEEcc
Confidence 99998765
No 299
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.72 E-value=0.92 Score=49.04 Aligned_cols=42 Identities=31% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674 76 LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 76 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~ 118 (519)
..++.+|+-+|||. |..+..+|+. |+ .|+++|.+ +-++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 35689999999996 5666666665 88 89999999 56666665
No 300
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=91.59 E-value=1.8 Score=42.68 Aligned_cols=128 Identities=13% Similarity=0.102 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCC--CCcEEEEEceee
Q psy14674 60 EVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNL--SDVVTILKGKVE 137 (519)
Q Consensus 60 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~--~~~i~~~~~d~~ 137 (519)
..|+..+.+.+...... ....|+.+|||-=.-+..+......+++=+|..++++.-++.+++.+. ..+.+++..|+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~-g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~ 142 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA-GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR 142 (260)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch
Confidence 45666666666543222 234799999998766655533222366666666788887888876553 456888888886
Q ss_pred Ee---ecC---CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 138 EV---ELP---FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 138 ~~---~~~---~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+- .+. ......-+++++.+..++.. .....++..+.+...||+.++.+...
T Consensus 143 ~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~-~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 143 QDWPAALAAAGFDPTAPTAWLWEGLLMYLTE-EAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred hhHHHHHHhCCCCCCCCeeeeecchhhcCCH-HHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 21 111 11135668888988776654 45778888888888899999987655
No 301
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.45 E-value=0.35 Score=46.06 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCCEEEEECCcccHHHHHH--HHcCCCEEEEEech-HHHHHHHHHHHHC-CCCCcEEEEEceeeEeecCC---CCceeeE
Q psy14674 78 KGKIVLDIGCGTGILSMFA--AKSGAARVIGIECS-NIVEYAKEIVDKN-NLSDVVTILKGKVEEVELPF---GIQKVDI 150 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~l--a~~g~~~V~gvD~s-~~~~~A~~~~~~~-~~~~~i~~~~~d~~~~~~~~---~~~~~D~ 150 (519)
++.++||||.|.-.+--.+ ...|. +.+|.|++ ..++.|+.++..| +++..|++....=.+--++. ..+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5668999999976332112 22355 89999999 5899999999999 88877887654322211211 1378999
Q ss_pred EEEecccc
Q psy14674 151 IISEWMGY 158 (519)
Q Consensus 151 Ivs~~~~~ 158 (519)
..|++..|
T Consensus 157 tlCNPPFh 164 (292)
T COG3129 157 TLCNPPFH 164 (292)
T ss_pred EecCCCcc
Confidence 99998743
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=91.29 E-value=0.3 Score=46.38 Aligned_cols=42 Identities=40% Similarity=0.498 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHH
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~ 118 (519)
-.+|..|||.-||+|..+..+.+.|. +.+|+|++ +.++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 36789999999999999999999866 89999999 58888764
No 303
>PRK13699 putative methylase; Provisional
Probab=91.24 E-value=0.46 Score=45.85 Aligned_cols=46 Identities=30% Similarity=0.331 Sum_probs=40.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK 122 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~ 122 (519)
-.+|..|||--||+|..+..+.+.|. +.+|+|++ +..+.|.++++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 35788999999999999999988866 89999999 588888888765
No 304
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.02 E-value=0.19 Score=42.19 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=29.8
Q ss_pred eeeEEEEecc---ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 147 KVDIIISEWM---GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 147 ~~D~Ivs~~~---~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+||+|+|-.+ .|.-.+++-+..+++.+...|+|||.+|.+--.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 5899999654 232334456888999999999999999955443
No 305
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=89.83 E-value=2 Score=42.02 Aligned_cols=123 Identities=19% Similarity=0.191 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHH----cC--CCEEEEEech-----------------------H
Q psy14674 61 VRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK----SG--AARVIGIECS-----------------------N 111 (519)
Q Consensus 61 ~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~----~g--~~~V~gvD~s-----------------------~ 111 (519)
.|...+..++.......-...|+|.||-.|..++.++. .+ .+++++.|.- .
T Consensus 57 ~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~ 136 (248)
T PF05711_consen 57 ERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNG 136 (248)
T ss_dssp HHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccc
Confidence 34455555554333233345799999999976655432 22 4578888741 0
Q ss_pred ----HHHHHHHHHHHCCC-CCcEEEEEceeeEeecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 112 ----IVEYAKEIVDKNNL-SDVVTILKGKVEEVELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 112 ----~~~~A~~~~~~~~~-~~~i~~~~~d~~~~~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
..+..++++...|+ .+++.++.|.+.+. +|. ..+++-++..+.= .+++ -...|..+...|.|||+++.
T Consensus 137 ~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dT-Lp~~p~~~IAll~lD~D----lYes-T~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 137 YLAVSLEEVRENFARYGLLDDNVRFVKGWFPDT-LPDAPIERIALLHLDCD----LYES-TKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHH-CCC-TT--EEEEEE-------SHHH-HHHHHHHHGGGEEEEEEEEE
T ss_pred ccccCHHHHHHHHHHcCCCcccEEEECCcchhh-hccCCCccEEEEEEecc----chHH-HHHHHHHHHhhcCCCeEEEE
Confidence 23333444444454 45799999998764 332 1144544433321 1233 34457788899999999999
Q ss_pred cCCc
Q psy14674 186 DKAS 189 (519)
Q Consensus 186 ~~~~ 189 (519)
+...
T Consensus 211 DDY~ 214 (248)
T PF05711_consen 211 DDYG 214 (248)
T ss_dssp SSTT
T ss_pred eCCC
Confidence 9877
No 306
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=89.48 E-value=0.46 Score=48.07 Aligned_cols=64 Identities=27% Similarity=0.404 Sum_probs=49.6
Q ss_pred EEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee---cCCCCceeeEEEEec
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE---LPFGIQKVDIIISEW 155 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~~~~D~Ivs~~ 155 (519)
+++|+-||.|.+++-+.++|...|.|+|++ .+++..+.+.. ....+|+.++. ++ +.+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~---~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP---KDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH---HT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc---ccceEEEecc
Confidence 699999999999999999998889999999 46666666643 67888988874 33 2499999865
No 307
>KOG3924|consensus
Probab=89.30 E-value=0.98 Score=46.41 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=69.9
Q ss_pred HHhcCCCCCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHH-------HHHHHHCCC-CCcEEEEEceeeEe
Q psy14674 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYA-------KEIVDKNNL-SDVVTILKGKVEEV 139 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A-------~~~~~~~~~-~~~i~~~~~d~~~~ 139 (519)
+.+...+.++....|+|.|-|.+..++|.. +.+.-+|+++. ...+.| ++.++..|. .+.+..++++..+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 344567889999999999999887766654 67778899886 222222 223344444 45688888887653
Q ss_pred ecCC-CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 140 ELPF-GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 140 ~~~~-~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..-. -....++|+.+-+. ..+ .+..=+.++..-+++|-+++
T Consensus 264 ~~v~eI~~eatvi~vNN~~---Fdp-~L~lr~~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNNVA---FDP-ELKLRSKEILQKCKDGTRII 305 (419)
T ss_pred HHHHHHhhcceEEEEeccc---CCH-HHHHhhHHHHhhCCCcceEe
Confidence 2110 01468999887652 222 22222345667788888887
No 308
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.17 E-value=0.91 Score=51.10 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=63.3
Q ss_pred CCEEEEECCcccHHHHHHHH-------c-C-----CCEEEEEechH-----H----------HHHHHHHHHH-----CCC
Q psy14674 79 GKIVLDIGCGTGILSMFAAK-------S-G-----AARVIGIECSN-----I----------VEYAKEIVDK-----NNL 125 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~-------~-g-----~~~V~gvD~s~-----~----------~~~A~~~~~~-----~~~ 125 (519)
.-+|||+|=|+|...+.+.+ . . .-+++++|..+ + .+.+++.... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 46999999999975543331 1 1 23789999632 1 1222222222 122
Q ss_pred ------CC--cEEEEEceeeEeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 126 ------SD--VVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 126 ------~~--~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.+ +++++.+|+.+. ++.-..++|+++.+.+.-.-..+-.-..++..+.++++|||.+.--
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~-~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANEL-LPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHH-HHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 11 245666777653 2211156999998876443333333456889999999999999833
No 309
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.81 E-value=1.8 Score=45.11 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=18.4
Q ss_pred hHHHHHHHHhcccCcCeEEEccC
Q psy14674 165 MLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 165 ~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
++..+|+.+.+-|.|||.++...
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEEE
Confidence 35678888889999999998543
No 310
>KOG2651|consensus
Probab=88.36 E-value=1.6 Score=44.56 Aligned_cols=44 Identities=34% Similarity=0.411 Sum_probs=34.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHH
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEI 119 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~ 119 (519)
..+-+.|+|+|.|-|.++.+++-...-.|+|||-|. ..+.|++.
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 345579999999999999999876444999999994 55555443
No 311
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.09 E-value=1.3 Score=42.99 Aligned_cols=90 Identities=19% Similarity=0.243 Sum_probs=65.7
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
..+.+|....|+|+-.|.++..+.+++- .|++||--.|.+-.- .. ..|+....|-..+.... .+.|..||
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~P~r--~~idWmVC 276 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFRPTR--SNIDWMVC 276 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccccCC--CCCceEEe
Confidence 4678899999999999999999999977 999999887654322 22 34788888877765422 78999999
Q ss_pred eccccccccchhHHHHHHHHhcccCcC
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATN 180 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~Lkpg 180 (519)
+.+ +....+-..+..+|..|
T Consensus 277 DmV-------EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 277 DMV-------EKPARVAALIAKWLVNG 296 (358)
T ss_pred ehh-------cCcHHHHHHHHHHHHcc
Confidence 876 22334444455666655
No 312
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=87.32 E-value=1.5 Score=41.54 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHH
Q psy14674 62 RTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVD 121 (519)
Q Consensus 62 r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~ 121 (519)
..+.+++++. ...-..+-++.|-.||+|.+.-.+.-. ..+.|+|-|++ ++++.|++|+.
T Consensus 36 AsEi~qR~l~-~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 36 ASEIFQRALH-YLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHC-TSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3555666552 222234569999999999765544322 35689999999 69999999874
No 313
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.19 E-value=1.3 Score=45.87 Aligned_cols=96 Identities=19% Similarity=0.247 Sum_probs=54.1
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCC
Q psy14674 72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPF 143 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~ 143 (519)
....+.++.+||-.|+|. |.++..+|++ |+++|+++|.+ +-++.|++ .|.. .++...-.++ .+..
T Consensus 185 ~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 185 NTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGAT---ATVNAGDPNAVEQVRELTG 257 (371)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCc---eEeCCCchhHHHHHHHHhC
Confidence 335577889999999752 3444455554 77689999998 46666654 3432 2222111111 1111
Q ss_pred CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
+.+|+|+-.. + ... .+....+.|+++|.++.
T Consensus 258 --~g~d~vid~~-G----~~~----~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 258 --GGVDYAFEMA-G----SVP----ALETAYEITRRGGTTVT 288 (371)
T ss_pred --CCCCEEEECC-C----ChH----HHHHHHHHHhcCCEEEE
Confidence 3689987532 1 111 23333468899998873
No 314
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=87.10 E-value=1.5 Score=42.94 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=70.0
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC-CCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-CCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~D~ 150 (519)
.....|+.|+-+| -.-..++.++-.| +++|..||+++ ++....+.+++.|+.+ ++.+.-|+.+ ++|. -.++||+
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~-plpe~~~~kFDv 224 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRN-PLPEDLKRKFDV 224 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcc-cChHHHHhhCCe
Confidence 4556788999999 4445566555544 67999999995 9999999999999865 8888888887 4542 1268999
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcC
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATN 180 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~Lkpg 180 (519)
.+.++.... ..+..++..--..||.-
T Consensus 225 fiTDPpeTi----~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 225 FITDPPETI----KALKLFLGRGIATLKGE 250 (354)
T ss_pred eecCchhhH----HHHHHHHhccHHHhcCC
Confidence 998875221 23455554444455544
No 315
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=87.03 E-value=2.2 Score=41.96 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=47.1
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcC------CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeec
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSG------AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL 141 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g------~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~ 141 (519)
..+.++..++|+|||.|.++.++++.- ...++.||-...-..+-..+........++=+..|+.++.+
T Consensus 14 ~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 14 GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccch
Confidence 345677899999999999999988862 34789999873222444444443322347778889888754
No 316
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=86.34 E-value=6 Score=37.53 Aligned_cols=103 Identities=22% Similarity=0.344 Sum_probs=61.9
Q ss_pred CCCCCCCEEEEECCccc----HHHHHH-HHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 74 KHLFKGKIVLDIGCGTG----ILSMFA-AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG----~ls~~l-a~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
..-...+.++++.|+.| .+++.+ |++-..++++|-.. +-+...++.+...++.+.++|+.++..+.-++. -..
T Consensus 37 AAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~-~~~ 115 (218)
T PF07279_consen 37 AAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPG-LKG 115 (218)
T ss_pred hccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhh-ccC
Confidence 33445578899966544 233333 33333478888888 566677777888888887899998853322221 157
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+++.+.= .++....+++.+ + +.|.|.++
T Consensus 116 iDF~vVDc~-----~~d~~~~vl~~~-~-~~~~GaVV 145 (218)
T PF07279_consen 116 IDFVVVDCK-----REDFAARVLRAA-K-LSPRGAVV 145 (218)
T ss_pred CCEEEEeCC-----chhHHHHHHHHh-c-cCCCceEE
Confidence 899976542 233343666654 3 44555544
No 317
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.08 E-value=0.64 Score=47.25 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=48.4
Q ss_pred EEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 82 VLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 82 VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
|+|+-||.|.+++-+.++|..-+.++|+++ +++..+.+.. + .++.+|+.++.... ...+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-IPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-CCCcCEEEecC
Confidence 689999999999999999987788999994 6666565532 2 44567888764321 13589998754
No 318
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=85.96 E-value=2.1 Score=43.18 Aligned_cols=94 Identities=23% Similarity=0.245 Sum_probs=55.3
Q ss_pred cCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCC
Q psy14674 73 NKHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFG 144 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 144 (519)
...+.++.+||..|+| .|..+..+|+. |. +|++++.+ +..+.+++ .|... ++...-... ..+.
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~~~~~- 230 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADE---VLNSLDDSPKDKKAAGLG- 230 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCE---EEcCCCcCHHHHHHHhcC-
Confidence 3456778899998876 36666666665 65 79999988 56666544 34321 111110000 1122
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
+.+|+++...- . ...+....+.|+++|.++-
T Consensus 231 -~~~D~vid~~g-----~----~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 231 -GGFDVIFDFVG-----T----QPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred -CCceEEEECCC-----C----HHHHHHHHHHhhcCCEEEE
Confidence 56998875321 1 1234455689999999874
No 319
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.72 E-value=0.4 Score=43.12 Aligned_cols=101 Identities=21% Similarity=0.155 Sum_probs=57.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEechH--HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN--IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~--~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
|++++-+|+..=..=..+.+.|+++|..||.++ .-+..+.++. ++...|... +.....++||.+.|-..
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s--------si~p~df~~-~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS--------SILPVDFAK-NWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc--------cccHHHHHH-HHHHhhccchhhheech
Confidence 678999999977666677778999999999873 2222222111 111111110 01111167898877332
Q ss_pred c-cc--------cccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 157 G-YC--------LFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 157 ~-~~--------l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
. |. +....++.. +..+.++|||||.++.....
T Consensus 73 iEh~GLGRYGDPidp~Gdl~~-m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRA-MAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred hccccccccCCCCCccccHHH-HHHHHHhhccCCeEEEEeec
Confidence 1 11 122344444 45667999999999865443
No 320
>KOG2078|consensus
Probab=85.61 E-value=0.51 Score=48.81 Aligned_cols=64 Identities=22% Similarity=0.374 Sum_probs=55.5
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCc-EEEEEceeeEe
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGKVEEV 139 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~ 139 (519)
-..+|..|-|+-||-|-+++.+++.+ ++|++-|.+ ++++..+.+++.|.+... |+.+..|+.++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 35678999999999999999999987 599999999 799999999999888765 78877776553
No 321
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.46 E-value=1.7 Score=46.88 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-----------ee--
Q psy14674 77 FKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-----------VE-- 140 (519)
Q Consensus 77 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-----------~~-- 140 (519)
.++.+||-+|+|. |..+..+++. |+ .|+++|.+ +-++.++. .|. +++.-+..+ +.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 3568999999986 4555555554 76 69999999 45555544 232 222222111 00
Q ss_pred --------cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 141 --------LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 141 --------~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
++.....+|+||...+. .......-+.++.-+.+|||+.++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Tali---pG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTALI---PGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECccc---CCCCCCeeehHHHHhhCCCCCEEE
Confidence 11112469999886542 222222223455568899998866
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=85.41 E-value=1.7 Score=41.94 Aligned_cols=94 Identities=33% Similarity=0.392 Sum_probs=52.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--c-CCCCce
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--L-PFGIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--~-~~~~~~ 147 (519)
..+.++.+||..|+|+ |.....+++. | .+|++++.+ +..+.+++ .+.. .++.....+.. + ....+.
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE----LGAD---HVIDYKEEDLEEELRLTGGGG 201 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH----hCCc---eeccCCcCCHHHHHHHhcCCC
Confidence 3447889999999996 5555555554 5 589999998 45555543 2221 11111111000 0 001157
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+++...-. . ..+....+.|+++|.++
T Consensus 202 ~d~vi~~~~~-----~----~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 202 ADVVIDAVGG-----P----ETLAQALRLLRPGGRIV 229 (271)
T ss_pred CCEEEECCCC-----H----HHHHHHHHhcccCCEEE
Confidence 9999864321 0 22344457889999887
No 323
>PRK13699 putative methylase; Provisional
Probab=85.31 E-value=0.63 Score=44.93 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=39.5
Q ss_pred EEEEEceeeEe--ecCCCCceeeEEEEecccccc------------ccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 129 VTILKGKVEEV--ELPFGIQKVDIIISEWMGYCL------------FYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 129 i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l------------~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
++++++|+.++ .+|+ +++|+||.++..... ...+.+..++.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lpd--~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPD--NAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCc--cccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 36778888776 6776 899999998753210 0113355778899999999998874
No 324
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.19 E-value=2.8 Score=43.12 Aligned_cols=96 Identities=20% Similarity=0.263 Sum_probs=53.9
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-ecCCC
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-ELPFG 144 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~ 144 (519)
...+.++.+||-.|||. |.++..+|++ |+.+|+++|.+ +-.+.+++ .|.. .++...-.+ + ....
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~---~~i~~~~~~~~~~i~~~~~- 242 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT---HTVNSSGTDPVEAIRALTG- 242 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---eEEcCCCcCHHHHHHHHhC-
Confidence 34567899999998753 3445555555 77679999988 46666643 3432 222211111 1 1111
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
...+|+|+- ..+ ... .+....+.|++||.++.
T Consensus 243 ~~g~d~vid-~~g----~~~----~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 243 GFGADVVID-AVG----RPE----TYKQAFYARDLAGTVVL 274 (358)
T ss_pred CCCCCEEEE-CCC----CHH----HHHHHHHHhccCCEEEE
Confidence 135898875 222 111 12333468899998873
No 325
>PRK11524 putative methyltransferase; Provisional
Probab=85.15 E-value=0.6 Score=46.68 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=40.0
Q ss_pred EEEEEceeeEe--ecCCCCceeeEEEEecccccc-----c--------cchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 129 VTILKGKVEEV--ELPFGIQKVDIIISEWMGYCL-----F--------YESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 129 i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l-----~--------~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
.+++++|+.++ .++. +++|+|++++..... . +...+..++.++.++|||||.++..
T Consensus 9 ~~i~~gD~~~~l~~l~~--~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPS--ESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhccc--CcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 47888998875 4554 799999998753210 0 1123457889999999999998854
No 326
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=84.90 E-value=3.3 Score=42.01 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred CCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEEEE
Q psy14674 78 KGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDIIIS 153 (519)
Q Consensus 78 ~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~Ivs 153 (519)
++.+||..|||. |..+..++++ |..+|++++.+ +..+.+++ .+.. .++..+-..+ ......+.+|+++.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 788999998864 4555555554 76689999988 45555443 2332 2222111101 11111145999986
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..- .. ..+....+.|+++|.++
T Consensus 238 ~~g-----~~----~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 238 ASG-----AP----AALASALRVVRPGGTVV 259 (339)
T ss_pred CCC-----CH----HHHHHHHHHHhcCCEEE
Confidence 322 11 12344458889999987
No 327
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.74 E-value=3.1 Score=38.06 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=64.6
Q ss_pred EECCcccHHHHHHHHc-C-CCEEEEEech--H-HHHH---HHHHHHHCCCCCcEEEEEceeeEeecCC--CCceeeEEEE
Q psy14674 84 DIGCGTGILSMFAAKS-G-AARVIGIECS--N-IVEY---AKEIVDKNNLSDVVTILKGKVEEVELPF--GIQKVDIIIS 153 (519)
Q Consensus 84 DiGcGtG~ls~~la~~-g-~~~V~gvD~s--~-~~~~---A~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~D~Ivs 153 (519)
=||-|.-.+++.++++ + ...++|.-.. + +.+. +..+++...-.+.......|+..+.... ...+||.||-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 3666666777777776 4 6677776554 2 3333 2344444322221233445666653221 2378999998
Q ss_pred ecccccc----------ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 154 EWMGYCL----------FYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 154 ~~~~~~l----------~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+...... .+...+..++..+.++|+++|.+.....+
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 7652220 22346778888899999999999877776
No 328
>KOG2912|consensus
Probab=83.81 E-value=2.3 Score=42.51 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=52.5
Q ss_pred EEEECCcccHH-HHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCC-----CCceeeEEEEe
Q psy14674 82 VLDIGCGTGIL-SMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPF-----GIQKVDIIISE 154 (519)
Q Consensus 82 VLDiGcGtG~l-s~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~-----~~~~~D~Ivs~ 154 (519)
=+|||.|...+ .+.=+++..-...|+|+.+ ....|..++.+|++...|.+++.......+.+ .+.-||.+.|+
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 47999887643 2222333334789999995 78999999999999999998887543322221 12459999998
Q ss_pred cc
Q psy14674 155 WM 156 (519)
Q Consensus 155 ~~ 156 (519)
+.
T Consensus 186 PP 187 (419)
T KOG2912|consen 186 PP 187 (419)
T ss_pred Cc
Confidence 75
No 329
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.83 E-value=3.3 Score=41.72 Aligned_cols=83 Identities=22% Similarity=0.184 Sum_probs=48.2
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 77 FKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 77 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
.++++||-+|||. |.++..+|++ |+..|+++|.+ +.++.|.+. . ++ +..+ ... ..+|+|+-
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~-~~~---~g~Dvvid 206 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEK-DPR---RDYRAIYD 206 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhh-ccC---CCCCEEEE
Confidence 3577899998763 4555656654 88778888887 455544421 1 11 1111 011 46898875
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
. .+. . ..+....++|+++|.++
T Consensus 207 ~-~G~----~----~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 207 A-SGD----P----SLIDTLVRRLAKGGEIV 228 (308)
T ss_pred C-CCC----H----HHHHHHHHhhhcCcEEE
Confidence 3 221 1 12344457899999987
No 330
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.64 E-value=3.1 Score=42.69 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=49.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEec---h-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceee
Q psy14674 76 LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIEC---S-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149 (519)
Q Consensus 76 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~---s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D 149 (519)
..++.+||-+|+|. |.++..+|++ |+ +|++++. + +-.+.++ +.|... +.....+..+.. . .+.+|
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga~~-v~~~~~~~~~~~-~--~~~~d 240 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGATY-VNSSKTPVAEVK-L--VGEFD 240 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCCEE-ecCCccchhhhh-h--cCCCC
Confidence 45788999999863 4555555655 77 7999987 4 3344443 344321 111111111101 1 14689
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+-.. + .. ..+....+.|++||.++
T Consensus 241 ~vid~~-g----~~----~~~~~~~~~l~~~G~~v 266 (355)
T cd08230 241 LIIEAT-G----VP----PLAFEALPALAPNGVVI 266 (355)
T ss_pred EEEECc-C----CH----HHHHHHHHHccCCcEEE
Confidence 887632 1 11 12444457899999887
No 331
>KOG1201|consensus
Probab=82.26 E-value=3.6 Score=40.94 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674 76 LFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF 143 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 143 (519)
...|+.||-=|.|+|. +++.+|++|+ ++...|++ +-.....+.++++| ++....+|+.+.+ ...
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 4568899999999994 7888899988 89999999 55555555566555 5788888887641 122
Q ss_pred CCceeeEEEEec
Q psy14674 144 GIQKVDIIISEW 155 (519)
Q Consensus 144 ~~~~~D~Ivs~~ 155 (519)
+.+.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 237899999865
No 332
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.15 E-value=1.6 Score=44.78 Aligned_cols=77 Identities=26% Similarity=0.286 Sum_probs=46.6
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech----------------------HHHHHHHHHHHHCCCCCcEEEEE
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS----------------------NIVEYAKEIVDKNNLSDVVTILK 133 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s----------------------~~~~~A~~~~~~~~~~~~i~~~~ 133 (519)
...+||-+|||. | .++..|+++|.++++.+|.+ +-++.|++++++.+-.-+++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999993 3 46778888999999999974 12233444554433222355555
Q ss_pred ceeeEeecCCCCceeeEEEEe
Q psy14674 134 GKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 134 ~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++..-....-...+|+|+..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEEc
Confidence 544321111111568999874
No 333
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=82.12 E-value=4.9 Score=41.10 Aligned_cols=90 Identities=10% Similarity=0.120 Sum_probs=50.9
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHH--cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 75 HLFKGKIVLDIGCGT-GILSMFAAK--SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 75 ~~~~~~~VLDiGcGt-G~ls~~la~--~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
...+|.+||-+|||. |.++..+++ .|+.+|+++|.+ +-++.|++ .+. ...+ .+ +.. ...+|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~--~~~-~~g~d~ 225 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DD--IPE-DLAVDH 225 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hh--hhh-ccCCcE
Confidence 356789999999863 344444444 366789999998 45666553 121 1111 11 111 024898
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|+- ..+. . .....+....++|++||.++
T Consensus 226 viD-~~G~----~-~~~~~~~~~~~~l~~~G~iv 253 (341)
T cd08237 226 AFE-CVGG----R-GSQSAINQIIDYIRPQGTIG 253 (341)
T ss_pred EEE-CCCC----C-ccHHHHHHHHHhCcCCcEEE
Confidence 874 3321 0 01223444457999999987
No 334
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=81.30 E-value=5.3 Score=39.09 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=43.4
Q ss_pred CCEEEEECCcccHHHHHHHHc---------CCCEEEEEechH-HHHHHHHHHHHC-----CCCCcEEEEEceeeEeecCC
Q psy14674 79 GKIVLDIGCGTGILSMFAAKS---------GAARVIGIECSN-IVEYAKEIVDKN-----NLSDVVTILKGKVEEVELPF 143 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s~-~~~~A~~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 143 (519)
.-+|+|+|+|+|.++.-+.+. ...+++-||+|+ +.+..++++... ....+|.+. .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999988866553 124899999995 777767666442 234456662 2332221
Q ss_pred CCceeeEEEEecc
Q psy14674 144 GIQKVDIIISEWM 156 (519)
Q Consensus 144 ~~~~~D~Ivs~~~ 156 (519)
..-+|+++-+
T Consensus 95 ---~~~~iiaNE~ 104 (252)
T PF02636_consen 95 ---FPGFIIANEL 104 (252)
T ss_dssp ---CCEEEEEESS
T ss_pred ---CCEEEEEeee
Confidence 3467777655
No 335
>PLN02827 Alcohol dehydrogenase-like
Probab=81.29 E-value=3.4 Score=43.02 Aligned_cols=45 Identities=36% Similarity=0.501 Sum_probs=30.4
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~ 118 (519)
..+.+|.+||-.|+|. |.++..+|++ |+..|+++|.+ +-.+.|++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 4577899999998753 3344444544 77679999987 55555543
No 336
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.01 E-value=2.1 Score=43.74 Aligned_cols=71 Identities=24% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCc-eeeEEEEec
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQ-KVDIIISEW 155 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~D~Ivs~~ 155 (519)
..+++|+-||.|.+.+-+.++|..-+.++|+++ .++.-+.+... -.++..|+.++....-.. .+|+|+..+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 358999999999999999999988899999995 66665555432 356667777653321112 789999855
No 337
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=80.48 E-value=2.3 Score=43.59 Aligned_cols=77 Identities=25% Similarity=0.233 Sum_probs=48.2
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEechH----------------------HHHHHHHHHHHCCCCCcEEEEE
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECSN----------------------IVEYAKEIVDKNNLSDVVTILK 133 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s~----------------------~~~~A~~~~~~~~~~~~i~~~~ 133 (519)
.+++||-||||. | .++..++++|.++++.+|.+. -++.|++.+++.+-.-+|+.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 467899999994 3 467788889999999998752 1344455555544333456665
Q ss_pred ceeeEeecCCCCceeeEEEEe
Q psy14674 134 GKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 134 ~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
.++..-.+......+|+||..
T Consensus 103 ~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEEc
Confidence 554321111111569999874
No 338
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.45 E-value=2.2 Score=43.31 Aligned_cols=97 Identities=25% Similarity=0.237 Sum_probs=51.3
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceee
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVD 149 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D 149 (519)
..+.++.+||-+|+|. |.++..++++ |+++|++++.+ +-.+.+++ .|....+.....+...+ .... ...+|
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~-~~~~d 233 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTS-GAGAD 233 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhC-CCCCC
Confidence 4567799999998752 2344444444 77669999988 45555543 34321111111111111 1111 13699
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+...- .. ..+....+.|+++|.++
T Consensus 234 ~vid~~g-----~~----~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 234 VAIECSG-----NT----AARRLALEAVRPWGRLV 259 (339)
T ss_pred EEEECCC-----CH----HHHHHHHHHhhcCCEEE
Confidence 9975321 11 12233347889999887
No 339
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.43 E-value=3.8 Score=41.05 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=62.1
Q ss_pred CEEEEECCcc-cHHHHHH-HHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecc
Q psy14674 80 KIVLDIGCGT-GILSMFA-AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156 (519)
Q Consensus 80 ~~VLDiGcGt-G~ls~~l-a~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~ 156 (519)
.+|.-||.|. |..+..+ ...|+ .|+-+|.| +-++...... ..|++....+...+.... .+.|++|...+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v--~~aDlvIgaVL 240 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV--KKADLVIGAVL 240 (371)
T ss_pred ccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh--hhccEEEEEEE
Confidence 4566777764 3333333 33355 99999999 6555544432 345777777766654333 68999998665
Q ss_pred ccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 157 GYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 157 ~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.......-+.+++.+.+|||+.++
T Consensus 241 ---IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 ---IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ---ecCCCCceehhHHHHHhcCCCcEEE
Confidence 4555556666777778999999887
No 340
>PLN02740 Alcohol dehydrogenase-like
Probab=80.23 E-value=4.7 Score=41.95 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=32.1
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~ 118 (519)
...+.+|.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-++.|++
T Consensus 193 ~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 193 TANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 35677899999999752 3344445554 77689999998 56666654
No 341
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=80.13 E-value=3 Score=39.38 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=27.1
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS 110 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s 110 (519)
.+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999994 4 46778888899999999975
No 342
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=79.82 E-value=3.2 Score=41.13 Aligned_cols=93 Identities=27% Similarity=0.280 Sum_probs=50.6
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-ee-eEe-ecCCCCcee
Q psy14674 75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KV-EEV-ELPFGIQKV 148 (519)
Q Consensus 75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~-~~~-~~~~~~~~~ 148 (519)
...++.+||-+|+|. |.++..+|++ |+.+|+++|.+ +-.+.|++ .|... ++.. +. ..+ .+.. ...+
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~---~i~~~~~~~~~~~~~~-~~g~ 188 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATA---LAEPEVLAERQGGLQN-GRGV 188 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcE---ecCchhhHHHHHHHhC-CCCC
Confidence 345788999998752 3344445554 77679999988 45555554 34321 1111 10 001 1111 1358
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|+++-. .+ . ...+....+.|+++|.++
T Consensus 189 d~vid~-~G----~----~~~~~~~~~~l~~~G~iv 215 (280)
T TIGR03366 189 DVALEF-SG----A----TAAVRACLESLDVGGTAV 215 (280)
T ss_pred CEEEEC-CC----C----hHHHHHHHHHhcCCCEEE
Confidence 988752 21 1 112333457889999887
No 343
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=79.62 E-value=2.5 Score=39.17 Aligned_cols=111 Identities=16% Similarity=0.266 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCCCCC-CEEEEECCcccHHHHHHHHc-CCCEEEEEechHHHHHHHHHHHHCCCC--CcEEEEEcee
Q psy14674 61 VRTMTYRNSMYHNKHLFKG-KIVLDIGCGTGILSMFAAKS-GAARVIGIECSNIVEYAKEIVDKNNLS--DVVTILKGKV 136 (519)
Q Consensus 61 ~r~~~y~~ai~~~~~~~~~-~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~A~~~~~~~~~~--~~i~~~~~d~ 136 (519)
.|+..+.+.+.......++ ..|+.+|||-=.....+... |..+++-+|..++++.-++.++..+.. .+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 4555555544433222244 48999999988887777764 355777788777887777777765321 2245688888
Q ss_pred eEee----cC---CCCceeeEEEEeccccccccchhHHHHHHH
Q psy14674 137 EEVE----LP---FGIQKVDIIISEWMGYCLFYESMLDTVLYA 172 (519)
Q Consensus 137 ~~~~----~~---~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~ 172 (519)
.+.. +. ......-+++++.+..++..+ ....+++.
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~-~~~~ll~~ 181 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPE-QVDALLRA 181 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HH-HHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHH-HHHHHHHH
Confidence 7531 11 112567888999987776654 34555544
No 344
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=79.39 E-value=5.5 Score=40.63 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=51.0
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceee
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVD 149 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D 149 (519)
....++.+||-.|+|. |.++..+|++ |++.|++++.+ +-.+.+++ .|....+.....+..++ .+.. ...+|
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~-~~~~d 230 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLR-ELRFD 230 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhc-CCCCC
Confidence 4566789999998753 3344444544 77668999988 45555543 34321111111111111 1111 13577
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.++.+..+. . ..+....+.|++||.++.
T Consensus 231 ~~v~d~~G~----~----~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 231 QLILETAGV----P----QTVELAIEIAGPRAQLAL 258 (347)
T ss_pred eEEEECCCC----H----HHHHHHHHHhhcCCEEEE
Confidence 444444422 1 123444478899999873
No 345
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.31 E-value=0.25 Score=44.03 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=33.7
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++|+|.++-+..++..++ ....++.++|+|||||++-.....
T Consensus 46 ns~d~iyaeHvlEHlt~~E-g~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 46 NSVDAIYAEHVLEHLTYDE-GTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred cchHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCcEEEEEcCC
Confidence 8999999988877666643 456689999999999988755444
No 346
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.09 E-value=8.2 Score=35.71 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=61.5
Q ss_pred EEEEECCccc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-------CC-CC--------CcEEEEEceeeEeec
Q psy14674 81 IVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK-------NN-LS--------DVVTILKGKVEEVEL 141 (519)
Q Consensus 81 ~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~-------~~-~~--------~~i~~~~~d~~~~~~ 141 (519)
+|.-||+|+= .++..++.+|. +|+.+|.+ +.++.+++.++. .+ +. .++.+. .|+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH--
Confidence 4667898863 45666777777 99999999 677777766544 11 11 234422 233322
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i 195 (519)
...|+|+=... ...+....++..+.+.+.|+.++.-+..++-+..+
T Consensus 77 ----~~adlViEai~----E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 77 ----VDADLVIEAIP----EDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp ----CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred ----hhhheehhhcc----ccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 25788875443 33355678899999999999999888777544433
No 347
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=78.72 E-value=7.9 Score=36.07 Aligned_cols=120 Identities=16% Similarity=0.239 Sum_probs=72.6
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHc----C-CCEEEEEech-HH-HHHHHHHHHHCCCCCc
Q psy14674 56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS----G-AARVIGIECS-NI-VEYAKEIVDKNNLSDV 128 (519)
Q Consensus 56 ~l~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~gvD~s-~~-~~~A~~~~~~~~~~~~ 128 (519)
.++.......|+..|.+. ++..|+++|.-.|..+++.|.. | ..+|.++|++ .- -..|++ ..+
T Consensus 51 ~~k~p~D~~~yQellw~~----~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p~ 119 (237)
T COG3510 51 CIKSPSDMWNYQELLWEL----QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VPD 119 (237)
T ss_pred ccCCHHHHHHHHHHHHhc----CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CCC
Confidence 344555566777777543 4678999999999777766543 4 2489999999 43 344443 234
Q ss_pred EEEEEceeeEeecCC-----CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 129 VTILKGKVEEVELPF-----GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 129 i~~~~~d~~~~~~~~-----~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
|.+++++..+..... ..+.--+.++.-..|. ++..+ +.++...++|.-|-+++.....
T Consensus 120 i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs--~~hvL-Ael~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 120 ILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHS--MEHVL-AELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred eEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCch--HHHHH-HHHHHhhhHhhcCceEEEeccc
Confidence 999999987652110 0022233333222222 22223 3356677889899888866555
No 348
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=78.63 E-value=27 Score=33.99 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=65.0
Q ss_pred CCCCCCEEEEECCcccHHHHHHHH----cC-CCEEEEEech-HHH-HHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCC
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAK----SG-AARVIGIECS-NIV-EYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGI 145 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~----~g-~~~V~gvD~s-~~~-~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 145 (519)
.+..+...+|+|+|+..=+..+.+ .| ..+.+.+|+| .++ ..|++....+.- -.+.-+.+|.+.- .+|.
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~La~~~~-- 151 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELALAELPR-- 151 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHHhcccC--
Confidence 345678999999999865554443 33 4589999999 554 455655555432 1266677776542 2332
Q ss_pred ceeeEEE--EeccccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 146 QKVDIII--SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 146 ~~~D~Iv--s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
..--+++ -+.+|.+-. +....++.++...|+||-.++..
T Consensus 152 ~~~Rl~~flGStlGN~tp--~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTP--GECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred CCeEEEEEecccccCCCh--HHHHHHHHHHHhcCCCcceEEEe
Confidence 2222222 133444332 34567889999999999888743
No 349
>KOG2352|consensus
Probab=78.45 E-value=2 Score=45.50 Aligned_cols=112 Identities=14% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCCCceee
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFGIQKVD 149 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~D 149 (519)
..+..+|-+|-|.|.+..++... +..+++||++. +|++.|++......- ++..+...|..+. .-..++..||
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence 34568999999999998887665 65699999999 699999988643211 1233333333222 1111236899
Q ss_pred EEEEeccc---ccc---ccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 150 IIISEWMG---YCL---FYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 150 ~Ivs~~~~---~~l---~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+++...=+ +.+ ..+-....++..++..|.|.|.++.+..+
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 99875421 111 11122446678888999999999866555
No 350
>KOG0022|consensus
Probab=78.09 E-value=4.6 Score=40.49 Aligned_cols=48 Identities=33% Similarity=0.539 Sum_probs=35.9
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHH
Q psy14674 72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEI 119 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~ 119 (519)
....+.+|.+|.-+|+|. |....+-|++ |+.+++|||++ +-.+.|++.
T Consensus 186 ~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 186 NTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 456778999999999986 4333344444 99999999999 577777663
No 351
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.93 E-value=5.1 Score=38.19 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=46.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech-------------------HHHHHHHHHHHHCCCCCcEEEEEcee
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS-------------------NIVEYAKEIVDKNNLSDVVTILKGKV 136 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s-------------------~~~~~A~~~~~~~~~~~~i~~~~~d~ 136 (519)
+..+|+-+|||. | .++..+++.|..+++.+|.+ .-++.+.++++..+..-+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 456899999994 4 56778889999999999876 12344455555443333355554444
Q ss_pred eEeecCCCCceeeEEEEe
Q psy14674 137 EEVELPFGIQKVDIIISE 154 (519)
Q Consensus 137 ~~~~~~~~~~~~D~Ivs~ 154 (519)
.+......-..+|+||..
T Consensus 107 ~~~~~~~~~~~~DvVI~a 124 (212)
T PRK08644 107 DEDNIEELFKDCDIVVEA 124 (212)
T ss_pred CHHHHHHHHcCCCEEEEC
Confidence 321111111468999864
No 352
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=77.92 E-value=14 Score=38.44 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=63.0
Q ss_pred EEEEECCcccHHHHHHHHcCCCEEEEE-echHHHHHHHHHHHHCCCCCc-EEEEEceeeEeecCCCCceeeEEEEecccc
Q psy14674 81 IVLDIGCGTGILSMFAAKSGAARVIGI-ECSNIVEYAKEIVDKNNLSDV-VTILKGKVEEVELPFGIQKVDIIISEWMGY 158 (519)
Q Consensus 81 ~VLDiGcGtG~ls~~la~~g~~~V~gv-D~s~~~~~A~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~ 158 (519)
.||-++-.-|.++..++..+. +.+ |.--.-...++|++.|++... ++++. ..+ ++| +.+|+|+.-+.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~---~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~-~~~---~~~d~vl~~~P-- 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP---YSIGDSYISELATRENLRLNGIDESSVKFLD--STA-DYP---QQPGVVLIKVP-- 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC---CeeehHHHHHHHHHHHHHHcCCCcccceeec--ccc-ccc---CCCCEEEEEeC--
Confidence 799999999999999986544 233 222244556888999998643 44442 222 355 56999976553
Q ss_pred ccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 159 CLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 159 ~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
-.-..++..+..+.+.|.||+.++
T Consensus 116 --K~~~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 116 --KTLALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred --CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 223456777888899999999976
No 353
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.95 E-value=8.7 Score=38.76 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=49.8
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 144 (519)
..++++|-.|+++|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++..|+.+.. +...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 457899999998874 4556667787 89988887 444444443433222235888888887642 1111
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 25689999865
No 354
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.52 E-value=22 Score=33.73 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c-------CCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L-------PFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~-------~~~~ 145 (519)
++++||-.|++.|+ ++..+++.|. +|++++.+ +-++.+.+..... .++.++.+|+.+.. + ....
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 46799999997653 3445556677 89999988 4444333333332 24788888877531 0 0001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3568887755
No 355
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=76.18 E-value=6.1 Score=34.78 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=42.7
Q ss_pred EEEEECCc-cc-HHHHHHHHcCCCEEEEEech--------------------HHHHHHHHHHHHCCCCCcEEEEEceeeE
Q psy14674 81 IVLDIGCG-TG-ILSMFAAKSGAARVIGIECS--------------------NIVEYAKEIVDKNNLSDVVTILKGKVEE 138 (519)
Q Consensus 81 ~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s--------------------~~~~~A~~~~~~~~~~~~i~~~~~d~~~ 138 (519)
+||=+||| .| .++..+++.|.++++.+|.. +-++.+++.++..+..-+++.+.....+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 47889998 34 36667888899899999853 1233444555444322234444444332
Q ss_pred eecCCCCceeeEEEEec
Q psy14674 139 VELPFGIQKVDIIISEW 155 (519)
Q Consensus 139 ~~~~~~~~~~D~Ivs~~ 155 (519)
........++|+||+..
T Consensus 81 ~~~~~~~~~~diVi~~~ 97 (143)
T cd01483 81 DNLDDFLDGVDLVIDAI 97 (143)
T ss_pred hhHHHHhcCCCEEEECC
Confidence 11011115799998743
No 356
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=75.92 E-value=14 Score=34.76 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS 110 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s 110 (519)
...+|+-+|||. | ..+..+++.|.++++-+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 456899999994 3 46778888999899998876
No 357
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.31 E-value=11 Score=39.62 Aligned_cols=85 Identities=21% Similarity=0.282 Sum_probs=50.5
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHH-cCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 76 LFKGKIVLDIGCGT-GILSMFAAK-SGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 76 ~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
..+|++|+-+|+|. |.....+++ .|+ +|+.+|.++ -++.|++ .|. +.. +.++ .- ..+|+|+
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e--~v---~~aDVVI 262 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEE--AV---KEGDIFV 262 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHH--HH---cCCCEEE
Confidence 46899999999996 444444444 477 899999984 4455443 343 221 1111 11 3579998
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
... + . ...+-.+..+.+|+||+++
T Consensus 263 ~at-G----~---~~~i~~~~l~~mk~Ggilv 286 (413)
T cd00401 263 TTT-G----N---KDIITGEHFEQMKDGAIVC 286 (413)
T ss_pred ECC-C----C---HHHHHHHHHhcCCCCcEEE
Confidence 632 1 1 1222233357899999886
No 358
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=74.48 E-value=9.4 Score=34.48 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=21.2
Q ss_pred CeeeEEEeeCceeeecCCCEEEEEEEEEeCCC
Q psy14674 333 HWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPR 364 (519)
Q Consensus 333 hW~q~v~~l~~p~~v~~g~~i~~~~~~~~~~~ 364 (519)
+| |.+++|++|+.|.+||.|..+..+..+.+
T Consensus 76 n~-Q~~y~l~~~v~i~~GD~l~~~C~Ydns~~ 106 (156)
T PF03712_consen 76 NW-QEFYPLKEPVTIPPGDTLRTECTYDNSDR 106 (156)
T ss_dssp ----S-EEEEEEEEE-TT-EEEEEEEEE-TT-
T ss_pred cc-ceeEECCCceEecCCCEEEEEEEEeCCCC
Confidence 44 67899999999999999999999997644
No 359
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=74.46 E-value=25 Score=37.20 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=63.4
Q ss_pred CCCCEEEEECCcc-cHH-HHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 77 FKGKIVLDIGCGT-GIL-SMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 77 ~~~~~VLDiGcGt-G~l-s~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
..|++|+-+|+|. |.. +..+...|+ +|+.+|.++ ....|.. .|. .+. ++.+. - ..+|+||.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea--l---~~aDVVI~ 273 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEA--A---ELGDIFVT 273 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHH--H---hCCCEEEE
Confidence 5799999999985 222 223334477 899999984 2222211 232 221 22221 1 46899986
Q ss_pred eccccccccchhHHHHHHHHhcccCcCeEEEccCC---cccccccccccCCCcccccceeEEecCCCcceeee
Q psy14674 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA---SLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFIC 223 (519)
Q Consensus 154 ~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 223 (519)
.. .. ...+-......+|+|++++--.. .+-...++............+.++.+|++..+++-
T Consensus 274 aT-----G~---~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~g~~i~lL 338 (425)
T PRK05476 274 AT-----GN---KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPDGKRIILL 338 (425)
T ss_pred CC-----CC---HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCCCCEEEEE
Confidence 32 11 11122244578899998872211 11111222211111223345677888887766664
No 360
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.83 E-value=8.9 Score=38.90 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCCCCC--CEEEEECC--cccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecC
Q psy14674 74 KHLFKG--KIVLDIGC--GTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELP 142 (519)
Q Consensus 74 ~~~~~~--~~VLDiGc--GtG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~ 142 (519)
..+.++ .+||-.|+ |.|..+..+|++ |+.+|++++.+ +-.+.+++. .|... ++..+-.++ .+.
T Consensus 148 ~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~---vi~~~~~~~~~~i~~~~ 221 (345)
T cd08293 148 GHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDA---AINYKTDNVAERLRELC 221 (345)
T ss_pred ccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcE---EEECCCCCHHHHHHHHC
Confidence 345555 89999987 355666666665 76689999888 455554442 34322 222111111 111
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
. +.+|+|+.. ++ . .. +....+.|+++|.++
T Consensus 222 ~--~gvd~vid~-~g----~-~~----~~~~~~~l~~~G~iv 251 (345)
T cd08293 222 P--EGVDVYFDN-VG----G-EI----SDTVISQMNENSHII 251 (345)
T ss_pred C--CCceEEEEC-CC----c-HH----HHHHHHHhccCCEEE
Confidence 1 469999752 21 1 11 233447899999987
No 361
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=73.76 E-value=3.5 Score=42.52 Aligned_cols=93 Identities=25% Similarity=0.315 Sum_probs=52.7
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-ecCCCC
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-ELPFGI 145 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~ 145 (519)
..+.++++||-.|+|. |.++..+|++ |+.+|++++.+ .-.+.+++ .+.. .++..+-.+ + .+..
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~-- 252 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREITG-- 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHhC--
Confidence 4566789999998753 4455555555 88789999998 45555543 3321 222211111 1 1111
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..+|+|+...- ... .+....+.|+++|.++
T Consensus 253 ~~~d~vld~~g-----~~~----~~~~~~~~l~~~G~~v 282 (365)
T cd08278 253 GGVDYALDTTG-----VPA----VIEQAVDALAPRGTLA 282 (365)
T ss_pred CCCcEEEECCC-----CcH----HHHHHHHHhccCCEEE
Confidence 46899875321 111 2344457889999887
No 362
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=73.76 E-value=6.1 Score=38.00 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=47.0
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech--------------------HHHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS--------------------NIVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s--------------------~~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
...+|+=+|||. | ..+..+++.|.++++.+|.+ .-++.+++++++.+-.-+++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 457899999994 3 56778888999999988642 2244555555554433346666555
Q ss_pred eeEeecCCCCceeeEEEEe
Q psy14674 136 VEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs~ 154 (519)
+..-.+......+|+||+.
T Consensus 100 i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 100 LDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eCHHHHHHHHhCCCEEEEc
Confidence 4221111111469999874
No 363
>PRK08223 hypothetical protein; Validated
Probab=73.31 E-value=7.7 Score=38.76 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=47.2
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
+..+||-+|||. | ..+..+|++|.++++-+|.+ + -++.|++.+.+.+-.-+|+.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 467899999994 4 56789999999999988863 1 144455555554433345555554
Q ss_pred eeEeecCCCCceeeEEEE
Q psy14674 136 VEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs 153 (519)
+.+-....-...+|+|+.
T Consensus 106 l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAFLDGVDVYVD 123 (287)
T ss_pred cCccCHHHHHhCCCEEEE
Confidence 443211110147999974
No 364
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.19 E-value=13 Score=37.86 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=60.6
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHH-------HCCCC-----CcEEEEEceeeEeecCCC
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVD-------KNNLS-----DVVTILKGKVEEVELPFG 144 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~-------~~~~~-----~~i~~~~~d~~~~~~~~~ 144 (519)
++|--||+|+ ..++..++.+|. +|+..|.+ +.++.+++.+. +.++. .++++.. ++++ .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~--a--- 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA--C--- 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH--H---
Confidence 5788999994 245666777777 99999999 56665554332 22221 1223221 1111 1
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL 190 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 190 (519)
....|+|+-... ...+....++..+.+.++|+.++.-++..+
T Consensus 81 v~~aDlViEavp----E~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 81 VADADFIQESAP----EREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred hcCCCEEEECCc----CCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 145788876443 333456677888889999998666555543
No 365
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=73.09 E-value=8.4 Score=39.15 Aligned_cols=50 Identities=28% Similarity=0.487 Sum_probs=38.0
Q ss_pred HHhcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHH
Q psy14674 70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEI 119 (519)
Q Consensus 70 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~ 119 (519)
+.......+|.+|.-+|||. |..++.-|+. |+.+++|+|++ +-++.|++.
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 33456778899999999985 5555555554 89999999999 578887763
No 366
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.82 E-value=4.5 Score=41.08 Aligned_cols=94 Identities=28% Similarity=0.419 Sum_probs=51.4
Q ss_pred CCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCCC
Q psy14674 74 KHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFGI 145 (519)
Q Consensus 74 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 145 (519)
....++.+||..|+| .|..+..+|++ |..+|++++.+ ...+.+++ .+.. .++...-.++ ... ..
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~i~~~~-~~ 234 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGAT---DIINPKNGDIVEQILELT-GG 234 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCc---EEEcCCcchHHHHHHHHc-CC
Confidence 345678899997765 24455555555 65588999777 45555443 2321 2222211111 011 11
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.+|+++...- .. ..+....+.|+++|.++
T Consensus 235 ~~~d~vld~~g-----~~----~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 235 RGVDCVIEAVG-----FE----ETFEQAVKVVRPGGTIA 264 (347)
T ss_pred CCCcEEEEccC-----CH----HHHHHHHHHhhcCCEEE
Confidence 46899875321 11 23444457889999887
No 367
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.69 E-value=8.6 Score=39.10 Aligned_cols=95 Identities=22% Similarity=0.311 Sum_probs=53.3
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-------e--
Q psy14674 72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-------V-- 139 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-------~-- 139 (519)
....+.++.+||-.|+|. |..+..+|++ |+..|++++.+ +..+.+++. +.. .++..+-.+ +
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 228 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE 228 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH
Confidence 345678889999988754 4455555554 77558999887 455555442 322 222211111 1
Q ss_pred ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..+. ..+|+|+...- . ...+....+.|+++|.++
T Consensus 229 ~~~~--~~~d~vld~~g-----~----~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 229 LLGG--KGPDVVIECTG-----A----ESCIQTAIYATRPGGTVV 262 (343)
T ss_pred HhCC--CCCCEEEECCC-----C----HHHHHHHHHHhhcCCEEE
Confidence 1121 45999976321 1 112344457889999887
No 368
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.52 E-value=4.4 Score=41.43 Aligned_cols=95 Identities=27% Similarity=0.293 Sum_probs=53.6
Q ss_pred cCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCC
Q psy14674 73 NKHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFG 144 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~ 144 (519)
...+.++.+||-.|+| .|..+..+|++ |+..|++++.+ +-.+.+++ .|.. .++...-.++ .+..
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~- 232 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTG- 232 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhC-
Confidence 3456788999999875 23444455554 77789999988 45555553 4432 2222111111 1111
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
...+|+++...- .. ..+....+.|+++|.++
T Consensus 233 ~~~~d~vld~~g-----~~----~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 233 GKGVDAVIIAGG-----GQ----DTFEQALKVLKPGGTIS 263 (351)
T ss_pred CCCCcEEEECCC-----CH----HHHHHHHHHhhcCCEEE
Confidence 146899875321 11 22444557889999887
No 369
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=72.39 E-value=15 Score=35.87 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCCCCCCEEEEECCcccH----HHHHHHHc-C-CCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCce
Q psy14674 74 KHLFKGKIVLDIGCGTGI----LSMFAAKS-G-AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQK 147 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~----ls~~la~~-g-~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 147 (519)
.......+||-+|+|+-- -+..+.+. + ...++-.|+.+.+. +.-..+.+|...+..+ .+
T Consensus 57 laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS------------Da~~~~~~Dc~t~~~~---~k 121 (299)
T PF06460_consen 57 LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS------------DADQSIVGDCRTYMPP---DK 121 (299)
T ss_dssp ----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-------------SSSEEEES-GGGEEES---S-
T ss_pred EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc------------ccCCceeccccccCCC---Cc
Confidence 345678899999999732 22333333 2 22666677654221 2235677898888777 79
Q ss_pred eeEEEEecc--------ccccccchhHHHHHHHHhcccCcCeEEEcc
Q psy14674 148 VDIIISEWM--------GYCLFYESMLDTVLYARDKWLATNGLLFPD 186 (519)
Q Consensus 148 ~D~Ivs~~~--------~~~l~~e~~l~~~l~~~~r~LkpgG~lip~ 186 (519)
+|+|||+.- +.....+.....+..-++.-|+-||.++.-
T Consensus 122 ~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 122 FDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 999999764 222334555666667777889999988743
No 370
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.17 E-value=15 Score=31.25 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=57.1
Q ss_pred CEEEEECCccc-HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEecccc
Q psy14674 80 KIVLDIGCGTG-ILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGY 158 (519)
Q Consensus 80 ~~VLDiGcGtG-~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~~ 158 (519)
.+|.++|-|.= ..+..+++.|. .|+++|+++- ++. . .+.++..|+.+-.+.- -+..|+|.|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a~-~----g~~~v~DDitnP~~~i-Y~~A~lIYS----- 76 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TAP-E----GLRFVVDDITNPNISI-YEGADLIYS----- 76 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cCc-c----cceEEEccCCCccHHH-hhCccceee-----
Confidence 38999999975 35778888886 8999999852 111 2 2788888887643221 156899987
Q ss_pred ccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 159 CLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 159 ~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+.....+...+-.+.+.++-.-++.|=...
T Consensus 77 -iRpppEl~~~ildva~aVga~l~I~pL~Ge 106 (129)
T COG1255 77 -IRPPPELQSAILDVAKAVGAPLYIKPLTGE 106 (129)
T ss_pred -cCCCHHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 222233444444445556555555554443
No 371
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=71.83 E-value=11 Score=38.85 Aligned_cols=46 Identities=35% Similarity=0.556 Sum_probs=31.0
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~ 118 (519)
...+.++.+||-.|+|. |.++..+|++ |+.+|+++|.+ +-++.+++
T Consensus 181 ~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 181 TAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 34567899999998742 3344445554 77689999998 55665543
No 372
>PRK10458 DNA cytosine methylase; Provisional
Probab=71.39 E-value=8.3 Score=41.35 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=41.4
Q ss_pred CCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEee
Q psy14674 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE 140 (519)
Q Consensus 79 ~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~ 140 (519)
.-+++|+-||.|.+++-+.++|...|.++|+++ +.+.-+.+... .+ ...++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p-~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DP-ATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CC-ccceeccChhhCc
Confidence 349999999999999999888987889999994 55555544311 01 1344556666653
No 373
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=70.94 E-value=8.4 Score=37.58 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=45.4
Q ss_pred CCCEEEEECCc-cc-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCG-TG-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
...+||-+||| .| ..+..+++.|.++++-+|.+ + -++.|++++++.+-.-+|+.+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 46799999998 34 46668888899999988764 1 123344455444333335555544
Q ss_pred eeEeecCCCCceeeEEEEe
Q psy14674 136 VEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs~ 154 (519)
+.+-....-...+|+||..
T Consensus 111 i~~~~~~~~~~~~DiVi~~ 129 (245)
T PRK05690 111 LDDDELAALIAGHDLVLDC 129 (245)
T ss_pred CCHHHHHHHHhcCCEEEec
Confidence 4321111001469999874
No 374
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=70.81 E-value=5.7 Score=33.98 Aligned_cols=83 Identities=28% Similarity=0.340 Sum_probs=49.0
Q ss_pred cccHHHHHHHHc-CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCCCceeeEEEEecccccc
Q psy14674 88 GTGILSMFAAKS-GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFGIQKVDIIISEWMGYCL 160 (519)
Q Consensus 88 GtG~ls~~la~~-g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~D~Ivs~~~~~~l 160 (519)
|.|.++..+|++ | .+|+++|.++ -.+.+++ .|.. .++..+-.++ .+.. ...+|+|+-.. +
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~~-~~~~d~vid~~-g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELTG-GRGVDVVIDCV-G--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHTT-TSSEEEEEESS-S---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---ccccccccccccccccccc-cccceEEEEec-C---
Confidence 457888878776 7 6999999994 6666654 4422 2333222211 1111 14799997532 1
Q ss_pred ccchhHHHHHHHHhcccCcCeEEEccCC
Q psy14674 161 FYESMLDTVLYARDKWLATNGLLFPDKA 188 (519)
Q Consensus 161 ~~e~~l~~~l~~~~r~LkpgG~lip~~~ 188 (519)
. ...++....+|+++|.++.--.
T Consensus 68 -~----~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 -S----GDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -S----HHHHHHHHHHEEEEEEEEEESS
T ss_pred -c----HHHHHHHHHHhccCCEEEEEEc
Confidence 1 2234445578999999884433
No 375
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=70.78 E-value=9.4 Score=35.11 Aligned_cols=74 Identities=23% Similarity=0.227 Sum_probs=43.0
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCEEEEEechH-------------------HHHHHHHHHHHCCCCCcEEEEEceeeEe
Q psy14674 81 IVLDIGCGT-G-ILSMFAAKSGAARVIGIECSN-------------------IVEYAKEIVDKNNLSDVVTILKGKVEEV 139 (519)
Q Consensus 81 ~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s~-------------------~~~~A~~~~~~~~~~~~i~~~~~d~~~~ 139 (519)
+|+-+|||. | ..+..+++.|.++++-+|.+. -.+.+++++++.+..-+++.+...+..-
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 478899994 4 467788889998999988752 1233444444433333355554444331
Q ss_pred ecCCCCceeeEEEEe
Q psy14674 140 ELPFGIQKVDIIISE 154 (519)
Q Consensus 140 ~~~~~~~~~D~Ivs~ 154 (519)
.....-..+|+||..
T Consensus 81 ~~~~~l~~~DlVi~~ 95 (174)
T cd01487 81 NLEGLFGDCDIVVEA 95 (174)
T ss_pred hHHHHhcCCCEEEEC
Confidence 111111469999864
No 376
>KOG2539|consensus
Probab=70.59 E-value=6 Score=41.72 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=60.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHH---cCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCC-Cceee
Q psy14674 76 LFKGKIVLDIGCGTGILSMFAAK---SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEVELPFG-IQKVD 149 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~ls~~la~---~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~-~~~~D 149 (519)
-+....++|+|.|.|.-.-.+.. .-...++.||.| +|...+....+. |-...--++.. -..+..+|.. ...||
T Consensus 198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 198 KFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred ccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccCCCCccccee
Confidence 34566788998887643322222 225578999999 788888777654 11100011111 1222222321 14599
Q ss_pred EEEEecccccccc-chhHHHHHHHHhcccCcCeEEE
Q psy14674 150 IIISEWMGYCLFY-ESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 150 ~Ivs~~~~~~l~~-e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|++....+.+.. +..+.....-+.+..++||.++
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lV 312 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLV 312 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEE
Confidence 9999665444433 2333444555667788888766
No 377
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=70.57 E-value=14 Score=36.01 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
..+.++.+||-.|+|. |..+..+|++ |..+|++++.+ +..+.+++. |..+.+..... . .... ..+|+
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~-~~~~--~~~d~ 162 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---D-EIGG--RGADV 162 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---h-hhcC--CCCCE
Confidence 5567889999998764 4455555554 76459999988 565555543 31111111110 0 1121 46899
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|+.... .. ..+....+.|+++|.++
T Consensus 163 vl~~~~-----~~----~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 163 VIEASG-----SP----SALETALRLLRDRGRVV 187 (277)
T ss_pred EEEccC-----Ch----HHHHHHHHHhcCCcEEE
Confidence 975321 11 12344457889999887
No 378
>PRK07063 short chain dehydrogenase; Provisional
Probab=70.19 E-value=18 Score=34.93 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=49.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 144 (519)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+...+...++.++.+|+.+..- ...
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999988764 4556667787 89999988 5555444444442233457888888865310 000
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|++|.+.
T Consensus 84 ~g~id~li~~a 94 (260)
T PRK07063 84 FGPLDVLVNNA 94 (260)
T ss_pred hCCCcEEEECC
Confidence 14689988754
No 379
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=69.97 E-value=16 Score=37.36 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=54.3
Q ss_pred cCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeE-e-ecCCCC
Q psy14674 73 NKHLFKGKIVLDIGCG--TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEE-V-ELPFGI 145 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 145 (519)
...+.+|.+||-.|++ .|.++..+|++ |+ +|++++.+ +-.+.+++ ..|....+..... +..+ + ....
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~-- 226 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFP-- 226 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCC--
Confidence 3567789999999983 55666666666 66 79999887 45555442 2343221111111 1111 0 1111
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.+|+|+. .++ . . .+....+.|++||.++
T Consensus 227 ~gvD~v~d-~vG----~-~----~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 227 EGIDIYFD-NVG----G-D----MLDAALLNMKIHGRIA 255 (348)
T ss_pred CCcEEEEE-CCC----H-H----HHHHHHHHhccCCEEE
Confidence 46899975 222 1 1 2334457899999987
No 380
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.38 E-value=32 Score=34.10 Aligned_cols=101 Identities=18% Similarity=0.221 Sum_probs=60.5
Q ss_pred EEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHH-------HHHCCC-C--------CcEEEEEceeeEeec
Q psy14674 81 IVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEI-------VDKNNL-S--------DVVTILKGKVEEVEL 141 (519)
Q Consensus 81 ~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~-------~~~~~~-~--------~~i~~~~~d~~~~~~ 141 (519)
+|--||+|. +.++..++++|. +|+++|.+ +.++.++++ +.+.+. . .++++. .|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 577889984 456667777776 89999999 566555432 222331 1 022221 22211
Q ss_pred CCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccc
Q psy14674 142 PFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC 193 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~ 193 (519)
.+..|+|+-... ........++..+.+.++|+.++..+...+-+.
T Consensus 80 ---~~~aDlVi~av~----e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 80 ---LKDADLVIEAAT----ENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred ---hccCCeeeeccc----ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 146798875432 122234577888888999999887776664444
No 381
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.16 E-value=17 Score=37.13 Aligned_cols=98 Identities=26% Similarity=0.250 Sum_probs=55.4
Q ss_pred hcCCCCCCCEEEEECCccc--HHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe--ecCCCC
Q psy14674 72 HNKHLFKGKIVLDIGCGTG--ILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV--ELPFGI 145 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGtG--~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 145 (519)
....+.+|.+||-.|+..| .++..+|++ |+ .++++-.+ +-.+.++ +.|-...|.+...|+.+- .+.. .
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~-g 209 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTG-G 209 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcC-C
Confidence 3456778999999996655 566677776 66 55565555 4333444 344433344333333221 1111 1
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
..+|+|+...- ... +....+.|+++|.++.
T Consensus 210 ~gvDvv~D~vG------~~~----~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 210 KGVDVVLDTVG------GDT----FAASLAALAPGGRLVS 239 (326)
T ss_pred CCceEEEECCC------HHH----HHHHHHHhccCCEEEE
Confidence 46999976332 111 2333478899998873
No 382
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=69.16 E-value=11 Score=33.59 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=30.2
Q ss_pred EECCccc--HHHHHHH--Hc-CCCEEEEEech-HHHHHHHHH--HHHCCCCCcEEEEEcee
Q psy14674 84 DIGCGTG--ILSMFAA--KS-GAARVIGIECS-NIVEYAKEI--VDKNNLSDVVTILKGKV 136 (519)
Q Consensus 84 DiGcGtG--~ls~~la--~~-g~~~V~gvD~s-~~~~~A~~~--~~~~~~~~~i~~~~~d~ 136 (519)
|||++.| .....+. .. +..+|+++|++ ...+..+++ +..++..+.+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 4444332 23 35689999999 588888888 66665444455555443
No 383
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.11 E-value=15 Score=36.85 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=53.3
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe----ecCCC
Q psy14674 72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV----ELPFG 144 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 144 (519)
....+.++.+||.+|+|. |..+..+|++ |.+.|++++.+ +..+.+++ .+.. .++..+-.+. ..+.
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~- 224 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNP- 224 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcC-
Confidence 345667889999998652 4444445554 66558999888 56655543 2322 2222211110 1121
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.+|+++.... . ...+....+.|+++|.++
T Consensus 225 -~~vd~v~~~~~-----~----~~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 225 -YGFDVVIEATG-----V----PKTLEQAIEYARRGGTVL 254 (334)
T ss_pred -CCCcEEEECCC-----C----hHHHHHHHHHHhcCCEEE
Confidence 56999986321 1 122344457889999886
No 384
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=68.90 E-value=13 Score=34.84 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
...+||=+|||. | ..+..++++|.++++.+|.. + -++.+++++++.+-.-+++.+...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 456899999985 3 45667788899999999864 1 134455555554443345555554
Q ss_pred eeEeecCCCCceeeEEEEec
Q psy14674 136 VEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs~~ 155 (519)
+.+.. +..-..||+|++..
T Consensus 100 ~~~~~-~~~~~~~dvVi~~~ 118 (197)
T cd01492 100 ISEKP-EEFFSQFDVVVATE 118 (197)
T ss_pred ccccH-HHHHhCCCEEEECC
Confidence 43221 10015799998753
No 385
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=68.71 E-value=45 Score=30.36 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=62.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCC-CCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPF-GIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~-~~~~~D~Ivs~ 154 (519)
..+.+|+-|||=+-...+.-......+++-.|.+. +.+..+ +. .|+.=|.... .++. -.+++|+||++
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~~~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQFG--GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHhcC--Cc-ceEECCCCChhhhhhhcCCCceEEEEC
Confidence 35689999999886555444223455899999983 112111 11 2333333221 1221 12789999999
Q ss_pred ccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 155 ~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+. ...++.+......++.++|+++.++.....
T Consensus 94 PP---Fl~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 94 PP---FLSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred CC---CCCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 87 356677777778887788998988866655
No 386
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=68.67 E-value=13 Score=31.01 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHc---CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--CCCCceeeEEEEecccccc
Q psy14674 87 CGTGILSMFAAKS---GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--PFGIQKVDIIISEWMGYCL 160 (519)
Q Consensus 87 cGtG~ls~~la~~---g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~~~D~Ivs~~~~~~l 160 (519)
||.|.++..+++. +..+|+.+|.+ +.++.+++ .+ +.++.||..+... ....+++|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC----
Confidence 4445555555443 44589999999 56555543 33 5789999876521 111267898887432
Q ss_pred ccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 161 FYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 161 ~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
.......+....+-+.|...++-
T Consensus 72 --~d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 72 --DDEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp --SHHHHHHHHHHHHHHTTTSEEEE
T ss_pred --CHHHHHHHHHHHHHHCCCCeEEE
Confidence 12222223333456667766653
No 387
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.47 E-value=27 Score=34.87 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=57.9
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC----------CC---------CCcEEEEEceee
Q psy14674 80 KIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN----------NL---------SDVVTILKGKVE 137 (519)
Q Consensus 80 ~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~----------~~---------~~~i~~~~~d~~ 137 (519)
++|.-||+|. | .++..+++.|. +|+.+|.+ +.++.+++.+... +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899994 2 45666777777 89999999 5777665544321 11 0111111 1111
Q ss_pred EeecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 138 EVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 138 ~~~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.+ ...|+|+-... ........++..+.+.++|+.+++-+...
T Consensus 82 --~~----~~aDlVieav~----e~~~~k~~~~~~l~~~~~~~~il~S~tsg 123 (291)
T PRK06035 82 --SL----SDADFIVEAVP----EKLDLKRKVFAELERNVSPETIIASNTSG 123 (291)
T ss_pred --Hh----CCCCEEEEcCc----CcHHHHHHHHHHHHhhCCCCeEEEEcCCC
Confidence 11 45788876442 22233567777888888888877644433
No 388
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=68.26 E-value=10 Score=39.27 Aligned_cols=77 Identities=21% Similarity=0.187 Sum_probs=47.5
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech--------------------HHHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS--------------------NIVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s--------------------~~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
.+.+||-+|||. | ..+..++++|.++++.+|.. .-++.|++++++.+-.-+|+.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 467999999994 3 46678888999999988863 1244556666554433345555444
Q ss_pred eeEeecCCCCceeeEEEEe
Q psy14674 136 VEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs~ 154 (519)
+..-........+|+|+..
T Consensus 107 i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 107 LTWSNALDELRDADVILDG 125 (355)
T ss_pred cCHHHHHHHHhCCCEEEEC
Confidence 4321111011579999874
No 389
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=68.04 E-value=25 Score=35.69 Aligned_cols=89 Identities=18% Similarity=0.019 Sum_probs=50.6
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeE
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~ 150 (519)
..+.+|.+||-.|+|. |.++..+|++ |+ +|++++.+ +-.+.|++ .|... ++. ..+ ... +.+|+
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~--~~~--~~~d~ 226 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYD--TPP--EPLDA 226 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--ccc--cCc--ccceE
Confidence 4667899999999752 3344445554 76 79999988 45555544 44332 121 111 111 45786
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
++-... . -. .+....+.|++||.++.
T Consensus 227 ~i~~~~----~----~~-~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 227 AILFAP----A----GG-LVPPALEALDRGGVLAV 252 (329)
T ss_pred EEECCC----c----HH-HHHHHHHhhCCCcEEEE
Confidence 643211 0 11 24444578999999873
No 390
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.93 E-value=22 Score=35.81 Aligned_cols=96 Identities=18% Similarity=0.115 Sum_probs=54.1
Q ss_pred hcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeEe--ecCCC
Q psy14674 72 HNKHLFKGKIVLDIGCG--TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEEV--ELPFG 144 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~ 144 (519)
....+.+|.+||=.|++ .|..+..+|++ |+ +|++++.+ +-.+.+++ .|...-+..... +..+. ....
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~- 205 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASP- 205 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCC-
Confidence 34567789999999853 55666666665 66 89999887 45555543 444211111110 11111 1111
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.+|+|+. .++ . .. +....+.|+++|.++
T Consensus 206 -~gvdvv~d-~~G----~-~~----~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 206 -DGYDCYFD-NVG----G-EF----SNTVIGQMKKFGRIA 234 (325)
T ss_pred -CCeEEEEE-CCC----H-HH----HHHHHHHhCcCcEEE
Confidence 46999975 221 1 11 233447899999998
No 391
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=67.58 E-value=15 Score=34.13 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=50.0
Q ss_pred EEEEECCcc-c-HHHHHHHHcCCCEEEEEech-HHHHHHHH------------HHHHCCCCCcEEEEEceeeEeecCCCC
Q psy14674 81 IVLDIGCGT-G-ILSMFAAKSGAARVIGIECS-NIVEYAKE------------IVDKNNLSDVVTILKGKVEEVELPFGI 145 (519)
Q Consensus 81 ~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s-~~~~~A~~------------~~~~~~~~~~i~~~~~d~~~~~~~~~~ 145 (519)
+|--+|.|- | .++..+|+.|. +|+|+|++ +-++..++ .++++.-..+..+. .|..+. .
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--i--- 74 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--I--- 74 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--H---
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--h---
Confidence 456677764 3 34556777787 99999999 44444331 11111001222222 122210 1
Q ss_pred ceeeEEEEecc-cc---ccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 146 QKVDIIISEWM-GY---CLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 146 ~~~D~Ivs~~~-~~---~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
...|+++.... .. ....-..+..+++.+.+.|++|..++..+..
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 35777765321 11 1112245677788888999998877766544
No 392
>KOG0821|consensus
Probab=67.25 E-value=16 Score=34.79 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=50.0
Q ss_pred HHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee
Q psy14674 69 SMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140 (519)
Q Consensus 69 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~ 140 (519)
.|...+......-|.+||-|.|.++..+..+|+.+...||.+ ..+.-.+-..++.. .+..+.++|+..+.
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 344445556677899999999999999999998899999988 35544444433322 35777888876653
No 393
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=66.74 E-value=15 Score=37.64 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=36.2
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHc---------CCCEEEEEech-HHHHHHHHHHHH
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKS---------GAARVIGIECS-NIVEYAKEIVDK 122 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~---------g~~~V~gvD~s-~~~~~A~~~~~~ 122 (519)
...+....++++|.|+|.++.-+.+. .+.++.-||+| +..+.-+++++.
T Consensus 73 ~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 73 LGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred hcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 44455678999999999887755443 25689999999 577776666655
No 394
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=66.32 E-value=23 Score=35.83 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=53.4
Q ss_pred cCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc-eeeE-e-ecCCCC
Q psy14674 73 NKHLFKGKIVLDIGCG--TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG-KVEE-V-ELPFGI 145 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~~ 145 (519)
...+.+|.+||-.|+. .|.++..+|++ |+ +|++++.+ +-.+.+++. .|....+..-.. +..+ + ....
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~~-- 219 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYFP-- 219 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhCC--
Confidence 3567889999999973 45555556665 77 79998877 455555442 343221111111 1111 0 1111
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.+|+|+. .++ . . .+....+.|+++|.++
T Consensus 220 ~gvd~v~d-~~g----~-~----~~~~~~~~l~~~G~iv 248 (338)
T cd08295 220 NGIDIYFD-NVG----G-K----MLDAVLLNMNLHGRIA 248 (338)
T ss_pred CCcEEEEE-CCC----H-H----HHHHHHHHhccCcEEE
Confidence 46899975 222 1 1 1334457899999987
No 395
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.18 E-value=20 Score=35.75 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=62.0
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-------CCCC---------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK-------NNLS---------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~-------~~~~---------~~i~~~~~d~~~~~ 140 (519)
.+|--||+|+ +.++..++++|. .|+..|.+ +.++.+++++.+ .|.- .++++ ..|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH--
Confidence 3788899995 246667777777 99999999 577776655332 1210 11222 122211
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhccc-CcCeEEEccCCcccc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWL-ATNGLLFPDKASLFI 192 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~L-kpgG~lip~~~~~~~ 192 (519)
+ ...|+|+-... ...+....++..+.+.+ +|+.++.-++.++..
T Consensus 82 ~----~~~d~ViEav~----E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~ 126 (286)
T PRK07819 82 F----ADRQLVIEAVV----EDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI 126 (286)
T ss_pred h----CCCCEEEEecc----cCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 1 45798876543 34455667778888888 788877766655333
No 396
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=66.14 E-value=25 Score=35.42 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCC--CCcEEEEEceee
Q psy14674 60 EVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNL--SDVVTILKGKVE 137 (519)
Q Consensus 60 ~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~--~~~i~~~~~d~~ 137 (519)
..|+..+.+.+.....-. ...|+-+|||-=.-+..+-.....+|+-+|.-+.++.=++.++..+. +...+++..|+.
T Consensus 75 a~Rtr~fD~~~~~~~~~g-~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~ 153 (297)
T COG3315 75 AARTRYFDDFVRAALDAG-IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLR 153 (297)
T ss_pred HHHHHHHHHHHHHHHHhc-ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEecccc
Confidence 345555555554322222 47899999995433322222112478888877788877777777663 345899999998
Q ss_pred Eee----cCC---CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 138 EVE----LPF---GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 138 ~~~----~~~---~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+-. +.. .....=++++|.+..++..+ ....++..+...+.||-.++...
T Consensus 154 ~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~-~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 154 EDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEE-AVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred ccchHHHHHhcCCCcCCCeEEEeccccccCCHH-HHHHHHHHHHHhCCCCceEEEec
Confidence 432 221 11556788899887766544 56788999988888888887654
No 397
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.51 E-value=22 Score=35.45 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=56.8
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-------CCC-C--------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK-------NNL-S--------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~-------~~~-~--------~~i~~~~~d~~~~~ 140 (519)
++|.-||+|. +.++..++++|. +|+.+|.+ +.++.+.+.... .+. . .++++. .+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 77 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKA-- 77 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHH--
Confidence 3678889984 245566677776 89999999 566666543221 110 0 012211 12111
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.- ...|+|+.... ........++..+.+.++|+.++.-+..+
T Consensus 78 ~~---~~aD~Vi~avp----e~~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 78 AV---ADADLVIEAVP----EKLELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred hh---cCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 11 45799986443 22233456667777888898877655555
No 398
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=65.41 E-value=16 Score=40.07 Aligned_cols=82 Identities=13% Similarity=0.073 Sum_probs=47.8
Q ss_pred cCCCCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-----C--CCCcEEEEEceeeEee-
Q psy14674 73 NKHLFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-----N--LSDVVTILKGKVEEVE- 140 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-----~--~~~~i~~~~~d~~~~~- 140 (519)
....+.|++||-.|+..|+ +...|++.|. +|++++.+ +-++...+.+... + ...++.++.+|+.+..
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 3456678899999975442 2334455576 89998887 4333332222221 1 1235889999987642
Q ss_pred cCCCCceeeEEEEec
Q psy14674 141 LPFGIQKVDIIISEW 155 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~ 155 (519)
+....+.+|+||+..
T Consensus 153 I~~aLggiDiVVn~A 167 (576)
T PLN03209 153 IGPALGNASVVICCI 167 (576)
T ss_pred HHHHhcCCCEEEEcc
Confidence 111115689998854
No 399
>PRK06197 short chain dehydrogenase; Provisional
Probab=65.23 E-value=23 Score=35.41 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=47.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 144 (519)
..+++||-.|+..|+ ++..+++.|+ +|+.+..+ +..+.+.+.+....-..++.++.+|+.+.. +...
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 367899999976664 3445566677 88888877 444444333332211235788888887642 1111
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|++|.+.
T Consensus 93 ~~~iD~li~nA 103 (306)
T PRK06197 93 YPRIDLLINNA 103 (306)
T ss_pred CCCCCEEEECC
Confidence 14689998865
No 400
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=64.95 E-value=8.9 Score=38.88 Aligned_cols=94 Identities=27% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEce---eeEe-ecCCCCc
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK---VEEV-ELPFGIQ 146 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d---~~~~-~~~~~~~ 146 (519)
....++.+||-.|+|. |..+..+|++ |...|++++.+ +..+.+++ .+.. .++..+ ..++ .... ..
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~-~~ 226 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTE-GR 226 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhC-CC
Confidence 4567888999998654 4454455554 76559999887 45554432 3331 222211 1111 1111 13
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
.+|+++...- . ...+....+.|+++|.++
T Consensus 227 ~~d~vld~~g-----~----~~~~~~~~~~l~~~G~~v 255 (343)
T cd08236 227 GADLVIEAAG-----S----PATIEQALALARPGGKVV 255 (343)
T ss_pred CCCEEEECCC-----C----HHHHHHHHHHhhcCCEEE
Confidence 5999975321 1 112344457889999877
No 401
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=64.66 E-value=22 Score=35.52 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=54.0
Q ss_pred hcCCCCCCCEEEEECCc--ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecC
Q psy14674 72 HNKHLFKGKIVLDIGCG--TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELP 142 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~ 142 (519)
....+.+|.+||-.|++ .|..+..+|++ |+ +|++++.+ +-.+.+++ .|.. .++...-.++ ...
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~ 208 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAA 208 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHC
Confidence 34557789999999853 45566666665 66 79999887 45555544 4442 2222211111 111
Q ss_pred CCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 143 FGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 143 ~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
. +.+|+|+.. .+ . ..+....+.|+++|.++
T Consensus 209 ~--~gvd~vld~-~g----~-----~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 209 P--DGIDCYFDN-VG----G-----EFSSTVLSHMNDFGRVA 238 (329)
T ss_pred C--CCcEEEEEC-CC----H-----HHHHHHHHhhccCCEEE
Confidence 1 468998752 21 1 11344457899999987
No 402
>PRK06914 short chain dehydrogenase; Provisional
Probab=64.59 E-value=26 Score=34.25 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=47.1
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-------CCCCce
Q psy14674 79 GKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-------PFGIQK 147 (519)
Q Consensus 79 ~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~~ 147 (519)
++++|-.|++.|. ++..+++.|+ +|++++-+ +-++...+.....+...++.++.+|+.+..- ....++
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 5688999976663 3445566676 89999877 4444443434444444568899998876421 000146
Q ss_pred eeEEEEec
Q psy14674 148 VDIIISEW 155 (519)
Q Consensus 148 ~D~Ivs~~ 155 (519)
.|+||...
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 79888754
No 403
>PRK05867 short chain dehydrogenase; Provisional
Probab=64.38 E-value=25 Score=33.77 Aligned_cols=76 Identities=20% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 144 (519)
.+++++|-.|+++|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++.+|+.+.. ....
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE 83 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999998774 4556677787 89999988 45555444444433 34778888876531 0001
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.++.|++|.+.
T Consensus 84 ~g~id~lv~~a 94 (253)
T PRK05867 84 LGGIDIAVCNA 94 (253)
T ss_pred hCCCCEEEECC
Confidence 14789998754
No 404
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=64.25 E-value=5.5 Score=34.54 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=35.3
Q ss_pred EEEEEceeeEe--ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 129 VTILKGKVEEV--ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 129 i~~~~~d~~~~--~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
+++..+|+.+. .+. ..+|+|+-+.+...-..+-.-..+++.+.++++|||.+.--+
T Consensus 33 L~L~~gDa~~~l~~l~---~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys 90 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLD---ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS 90 (124)
T ss_dssp EEEEES-HHHHHHHB----T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-
T ss_pred EEEEEcHHHHHHHhCc---ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee
Confidence 56677787653 223 689999998764433333334568899999999999987433
No 405
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.22 E-value=19 Score=36.03 Aligned_cols=73 Identities=27% Similarity=0.261 Sum_probs=45.8
Q ss_pred EEEEECCc-cc-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEceeeE
Q psy14674 81 IVLDIGCG-TG-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGKVEE 138 (519)
Q Consensus 81 ~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d~~~ 138 (519)
+||-+||| .| .++..|+..|.++++-+|.+ + -++.|.+++++.+-.-+|+.+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 48889998 34 45667888899999998863 1 134455555544433346667666654
Q ss_pred eecCCCCceeeEEEEe
Q psy14674 139 VELPFGIQKVDIIISE 154 (519)
Q Consensus 139 ~~~~~~~~~~D~Ivs~ 154 (519)
.... --.+||+|++.
T Consensus 81 ~~~~-f~~~fdvVi~a 95 (291)
T cd01488 81 KDEE-FYRQFNIIICG 95 (291)
T ss_pred hhHH-HhcCCCEEEEC
Confidence 3211 11579999873
No 406
>PRK08328 hypothetical protein; Provisional
Probab=63.88 E-value=15 Score=35.55 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=26.1
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEec
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIEC 109 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~ 109 (519)
.+.+||-+|||. | ..+..+++.|.++++.+|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999994 4 4677888899999999984
No 407
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=63.53 E-value=40 Score=29.66 Aligned_cols=71 Identities=25% Similarity=0.322 Sum_probs=38.0
Q ss_pred CCCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEE
Q psy14674 77 FKGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 77 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs 153 (519)
.++++|+-+|||. | .++..+++.|...|+.+|.+ +-.+.+.+...... +.....+..+. . +.+|+|++
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~---~~~Dvvi~ 87 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--L---AEADLIIN 87 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--c---ccCCEEEe
Confidence 5578999999973 1 23334444455689999988 43333333222111 11111222221 1 57899998
Q ss_pred ecc
Q psy14674 154 EWM 156 (519)
Q Consensus 154 ~~~ 156 (519)
...
T Consensus 88 ~~~ 90 (155)
T cd01065 88 TTP 90 (155)
T ss_pred CcC
Confidence 554
No 408
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=63.51 E-value=23 Score=31.38 Aligned_cols=74 Identities=24% Similarity=0.249 Sum_probs=50.4
Q ss_pred CEEEEECCcccH---HHHHHHHcCCCEEEEEech---HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 80 KIVLDIGCGTGI---LSMFAAKSGAARVIGIECS---NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 80 ~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s---~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
|+||-.|+++|+ ++..+++.|+.+|+.+..+ +.++...+.++..+ .++.+++.|+.+.. .....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 468889998874 5666777788789999887 45555555555555 56999998876531 11112
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
++.|++|.+.
T Consensus 79 ~~ld~li~~a 88 (167)
T PF00106_consen 79 GPLDILINNA 88 (167)
T ss_dssp SSESEEEEEC
T ss_pred cccccccccc
Confidence 5799999865
No 409
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=63.37 E-value=40 Score=33.70 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=41.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCC-CCCcEEEEEceeeEee-cCCCCceeeE
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNN-LSDVVTILKGKVEEVE-LPFGIQKVDI 150 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~~~~D~ 150 (519)
.+++++|-+|+| |. .+..+++.|+++|+.++.+ +..+.+++..+... ....+.+...|+.+.. +......+|+
T Consensus 124 ~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 124 VKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred cCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence 467899999997 63 2334556788889999887 22233333322210 0112333344443221 1111135799
Q ss_pred EEEecc
Q psy14674 151 IISEWM 156 (519)
Q Consensus 151 Ivs~~~ 156 (519)
||....
T Consensus 203 lINaTp 208 (289)
T PRK12548 203 LVNATL 208 (289)
T ss_pred EEEeCC
Confidence 987553
No 410
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=63.15 E-value=13 Score=36.15 Aligned_cols=77 Identities=26% Similarity=0.359 Sum_probs=45.6
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
++.+||-+|||. | ..+..++++|.++++.+|.+ + -++.|++++++.+..-+|+.+...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 457899999983 4 46778888999999988864 1 123444555444333335555443
Q ss_pred eeEeecCCCCceeeEEEEe
Q psy14674 136 VEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs~ 154 (519)
+.+.........+|+||..
T Consensus 103 i~~~~~~~~~~~~DlVvd~ 121 (240)
T TIGR02355 103 LDDAELAALIAEHDIVVDC 121 (240)
T ss_pred CCHHHHHHHhhcCCEEEEc
Confidence 3321111111579999874
No 411
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=62.95 E-value=12 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=27.0
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS 110 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s 110 (519)
.+.+||-+|||. | ..+..+++.|.++++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999983 4 46678888899999999875
No 412
>PRK08324 short chain dehydrogenase; Validated
Probab=62.23 E-value=33 Score=38.82 Aligned_cols=75 Identities=24% Similarity=0.271 Sum_probs=47.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-----cC---CC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-----LP---FG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-----~~---~~ 144 (519)
.++++||-.|++.|+ ++..+++.|+ +|+++|.+ +-++.+.+.+... .++.++.+|+.+.. +. ..
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999986653 3445556687 89999998 4444444333322 35788888876531 00 00
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|+||.+.
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 14689998854
No 413
>PRK08339 short chain dehydrogenase; Provisional
Probab=61.97 E-value=33 Score=33.42 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=49.2
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec-----C--CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL-----P--FGI 145 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~-----~--~~~ 145 (519)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+.... ..++.++.+|+.+..- . ...
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 367899999998874 5556777787 89999988 44444444433221 2347888888876410 0 011
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
++.|++|.+.
T Consensus 84 g~iD~lv~na 93 (263)
T PRK08339 84 GEPDIFFFST 93 (263)
T ss_pred CCCcEEEECC
Confidence 4689888754
No 414
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=61.38 E-value=32 Score=35.14 Aligned_cols=96 Identities=24% Similarity=0.225 Sum_probs=49.0
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceee----Ee-ecCCCCc
Q psy14674 75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE----EV-ELPFGIQ 146 (519)
Q Consensus 75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~----~~-~~~~~~~ 146 (519)
...++.+||-.|+|. |..+..+|++ |+++|++++.+ +-.+.++ ..|....+.....+.. .+ .... ..
T Consensus 174 ~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~-~~ 248 (361)
T cd08231 174 PVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITG-GR 248 (361)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhC-CC
Confidence 334788899888641 2333344444 77689999887 4444443 3444211111111110 01 1111 14
Q ss_pred eeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 147 ~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
.+|+|+...- . ...+....+.|+++|.++
T Consensus 249 ~~d~vid~~g-----~----~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 249 GADVVIEASG-----H----PAAVPEGLELLRRGGTYV 277 (361)
T ss_pred CCcEEEECCC-----C----hHHHHHHHHHhccCCEEE
Confidence 6899975321 1 112334457889999887
No 415
>PRK07677 short chain dehydrogenase; Provisional
Probab=61.37 E-value=32 Score=33.06 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCCCc
Q psy14674 79 GKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFGIQ 146 (519)
Q Consensus 79 ~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~ 146 (519)
++++|-.|++.|+ ++..+++.|. +|++++.+ +.++.+.+.+...+ .++.++.+|+.+... ....+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4688999998774 4445666677 89999987 44444444444332 457888888765310 00014
Q ss_pred eeeEEEEec
Q psy14674 147 KVDIIISEW 155 (519)
Q Consensus 147 ~~D~Ivs~~ 155 (519)
+.|++|.+.
T Consensus 78 ~id~lI~~a 86 (252)
T PRK07677 78 RIDALINNA 86 (252)
T ss_pred CccEEEECC
Confidence 679988754
No 416
>PRK07062 short chain dehydrogenase; Provisional
Probab=61.29 E-value=33 Score=33.19 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=48.9
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 144 (519)
..++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+....-..++.++..|+.+.. ....
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 357899999988874 4556666777 79999988 444444444433221235777888876641 0001
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|++|.+.
T Consensus 85 ~g~id~li~~A 95 (265)
T PRK07062 85 FGGVDMLVNNA 95 (265)
T ss_pred cCCCCEEEECC
Confidence 14689988754
No 417
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.23 E-value=32 Score=39.08 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=67.0
Q ss_pred CEEEEECCcc--cHHHHHHH-HcCCCEEEEEech-HHHHHHHHHHHHC-------C-CC--------CcEEEEEceeeEe
Q psy14674 80 KIVLDIGCGT--GILSMFAA-KSGAARVIGIECS-NIVEYAKEIVDKN-------N-LS--------DVVTILKGKVEEV 139 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la-~~g~~~V~gvD~s-~~~~~A~~~~~~~-------~-~~--------~~i~~~~~d~~~~ 139 (519)
++|.-||+|+ ..++..++ .+|. .|+..|.+ +.++.+++++... + +. .+|++.. |...
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTT-DYRG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeC-ChHH-
Confidence 5899999997 24555666 6676 99999999 6777766554321 1 11 1233331 1111
Q ss_pred ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674 140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195 (519)
Q Consensus 140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i 195 (519)
+ ...|+|+=.. ....+....++..+.+.++|+.++.-++.++-+..+
T Consensus 387 -~----~~aDlViEav----~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~l 433 (708)
T PRK11154 387 -F----KHADVVIEAV----FEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQI 433 (708)
T ss_pred -h----ccCCEEeecc----cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 1 4688887533 233356778899999999999999877777555444
No 418
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=61.19 E-value=28 Score=34.52 Aligned_cols=48 Identities=38% Similarity=0.490 Sum_probs=41.7
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN 123 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~ 123 (519)
...++..|||--+|+|..+..+.+.|. +.+|+|++ +.++.+.++....
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 567899999999999999999888865 89999999 6888888887653
No 419
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=61.14 E-value=10 Score=39.43 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=24.0
Q ss_pred CCCEEEEECCcc-cHHHHHHH-HcCCCEEEEEech-HHHHH
Q psy14674 78 KGKIVLDIGCGT-GILSMFAA-KSGAARVIGIECS-NIVEY 115 (519)
Q Consensus 78 ~~~~VLDiGcGt-G~ls~~la-~~g~~~V~gvD~s-~~~~~ 115 (519)
++.+|+-+|+|. |..+...+ ..|+ +|+++|.+ +-++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~ 205 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQ 205 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 456799999883 44444333 3477 79999998 44433
No 420
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.98 E-value=35 Score=33.90 Aligned_cols=99 Identities=18% Similarity=0.159 Sum_probs=57.5
Q ss_pred CEEEEECCccc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC--------CCC---------CcEEEEEceeeEe
Q psy14674 80 KIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN--------NLS---------DVVTILKGKVEEV 139 (519)
Q Consensus 80 ~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~--------~~~---------~~i~~~~~d~~~~ 139 (519)
++|.-||+|.- .++..++++|. +|+.+|.+ +.++.+++.++.. .+. .++++. .|..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~- 80 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAE- 80 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHH-
Confidence 46888899853 45556677776 89999999 5677666543211 111 122222 22211
Q ss_pred ecCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 140 ELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 140 ~~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
. . ...|+|+.... ........++.++...++++.++.-+..+
T Consensus 81 -a-~--~~aDlVieavp----e~~~~k~~~~~~l~~~~~~~~ii~sntSt 122 (287)
T PRK08293 81 -A-V--KDADLVIEAVP----EDPEIKGDFYEELAKVAPEKTIFATNSST 122 (287)
T ss_pred -H-h--cCCCEEEEecc----CCHHHHHHHHHHHHhhCCCCCEEEECccc
Confidence 1 1 45798887543 22234566777787888888766544444
No 421
>PRK07806 short chain dehydrogenase; Provisional
Probab=60.85 E-value=73 Score=30.29 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=44.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-H-HHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-N-IVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PF 143 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~ 143 (519)
..++++|-.|+..|+ ++..+++.|. +|+++..+ + ..+.....++..+ .++.++.+|+.+..- ..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356899999986653 3344555676 78888765 2 3333333333322 347888888876421 00
Q ss_pred CCceeeEEEEec
Q psy14674 144 GIQKVDIIISEW 155 (519)
Q Consensus 144 ~~~~~D~Ivs~~ 155 (519)
..+.+|++|.+.
T Consensus 81 ~~~~~d~vi~~a 92 (248)
T PRK07806 81 EFGGLDALVLNA 92 (248)
T ss_pred hCCCCcEEEECC
Confidence 013589888654
No 422
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=60.68 E-value=61 Score=34.18 Aligned_cols=123 Identities=21% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHH-cCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEE
Q psy14674 76 LFKGKIVLDIGCGT-GILSMFAAK-SGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152 (519)
Q Consensus 76 ~~~~~~VLDiGcGt-G~ls~~la~-~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Iv 152 (519)
...|++|+-+|+|. |......++ .|+ +|+++|.++ -...|+ ..|. .+. +.++. + ...|+||
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leea-l----~~aDVVI 255 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEA-A----KIGDIFI 255 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHH-H----hcCCEEE
Confidence 46799999999996 433333333 366 899999885 222222 1232 222 22221 1 3579987
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccCCc---ccccccccccCCCcccccceeEEecCCCcceee
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS---LFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~ 222 (519)
+.. .. ...+-.+....+|+|++++-.... +-...+.........+......+.+|++..+++
T Consensus 256 taT-----G~---~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g~~i~l 320 (406)
T TIGR00936 256 TAT-----GN---KDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDGRRIYL 320 (406)
T ss_pred ECC-----CC---HHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCCCEEEE
Confidence 632 11 111222345788999988732221 000111111111122344556677887765555
No 423
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=60.67 E-value=32 Score=39.17 Aligned_cols=104 Identities=14% Similarity=0.211 Sum_probs=68.1
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-------CC-CC--------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK-------NN-LS--------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~-------~~-~~--------~~i~~~~~d~~~~~ 140 (519)
++|.-||+|+ ..++..+|.+|. .|+.+|.+ +.++.+++.+.. .| +. .+|++. .|...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG-- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH--
Confidence 5799999998 356677788887 99999999 677766655432 11 11 123322 12211
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i 195 (519)
....|+||=.. ....+....++..+.+.++|+.++.-++.++-+..+
T Consensus 390 ----~~~aDlViEav----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~l 436 (715)
T PRK11730 390 ----FERVDVVVEAV----VENPKVKAAVLAEVEQKVREDTILASNTSTISISLL 436 (715)
T ss_pred ----hcCCCEEEecc----cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 14678887533 233356778899999999999999877777554433
No 424
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=60.26 E-value=9.3 Score=38.66 Aligned_cols=93 Identities=24% Similarity=0.318 Sum_probs=53.0
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-e-cCC
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-E-LPF 143 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~-~~~ 143 (519)
...+.++.+||..|+|. |..+..+|+. |. +|+++..+ +..+.+++ .+.. .++...-.+ + . .+.
T Consensus 154 ~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~~~ 225 (337)
T cd08261 154 RAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGAD---DTINVGDEDVAARLRELTDG 225 (337)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCC---EEecCcccCHHHHHHHHhCC
Confidence 35667888999998763 5555556665 65 79998777 55555543 2322 222211111 1 1 121
Q ss_pred CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..+|+++.... . ...+....+.|+++|.++
T Consensus 226 --~~vd~vld~~g-----~----~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 226 --EGADVVIDATG-----N----PASMEEAVELVAHGGRVV 255 (337)
T ss_pred --CCCCEEEECCC-----C----HHHHHHHHHHHhcCCEEE
Confidence 45899976421 1 112344457889999887
No 425
>PRK09242 tropinone reductase; Provisional
Probab=59.49 E-value=38 Score=32.59 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
.++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++...+.+....-..++.++.+|+.+.. .....
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999997764 4555666677 89999887 555444444443321245788888886531 11011
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|+|+...
T Consensus 87 g~id~li~~a 96 (257)
T PRK09242 87 DGLHILVNNA 96 (257)
T ss_pred CCCCEEEECC
Confidence 4689988754
No 426
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=59.20 E-value=29 Score=33.57 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=26.2
Q ss_pred CCCEEEEECCc-cc-HHHHHHHHcCCCEEEEEech
Q psy14674 78 KGKIVLDIGCG-TG-ILSMFAAKSGAARVIGIECS 110 (519)
Q Consensus 78 ~~~~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s 110 (519)
...+||-+||| .| ..+..+++.|..+++-+|..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45689999998 44 45668888999999999853
No 427
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=59.02 E-value=13 Score=38.17 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=51.9
Q ss_pred cCCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-ecCCC
Q psy14674 73 NKHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-ELPFG 144 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~ 144 (519)
...+.++.+||-.|+| .|..+..++++ |..+|++++.+ +..+.+++ .|.. .++..+-.+ + .+..
T Consensus 177 ~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~~---~vv~~~~~~~~~~l~~~~~- 248 (363)
T cd08279 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGAT---HTVNASEDDAVEAVRDLTD- 248 (363)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCCe---EEeCCCCccHHHHHHHHcC-
Confidence 3556788899999874 24444445554 77569999887 44444432 3431 222221111 1 1111
Q ss_pred CceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 145 IQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 145 ~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
...+|+++...- . ...+....+.|+++|.++
T Consensus 249 ~~~vd~vld~~~-----~----~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 249 GRGADYAFEAVG-----R----AATIRQALAMTRKGGTAV 279 (363)
T ss_pred CCCCCEEEEcCC-----C----hHHHHHHHHHhhcCCeEE
Confidence 156898875321 0 122344457889999887
No 428
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=58.56 E-value=56 Score=32.89 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=55.8
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEE-EceeeEeec----CCCCceeeEE
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL-KGKVEEVEL----PFGIQKVDII 151 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~-~~d~~~~~~----~~~~~~~D~I 151 (519)
.+|+-+|+|. |.++..++++|. .|+.++-+ +.++..++ .+|+ .+. .+....+.. +...+.+|+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~~~~~~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAIPAETADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCe----EEeeCCcceeeccCCCCcccccccCEE
Confidence 4689999994 567888888876 89999987 45544433 1232 111 011111110 1112578999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
+...=. ......+..+..++.++..+++-...
T Consensus 75 iv~vK~------~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 75 LLACKA------YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred EEECCH------HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 764321 12455677778889898877754443
No 429
>PRK06128 oxidoreductase; Provisional
Probab=58.52 E-value=53 Score=32.64 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=45.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-H--HHHHHHHHHHHCCCCCcEEEEEceeeEeec--------C
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-N--IVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------P 142 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~--~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~ 142 (519)
..+++||-.|++.|+ ++..+++.|+ +|+.+..+ + -.+...+.++..+ .++.++.+|+.+..- .
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHH
Confidence 357899999987764 4555666677 77766554 2 2233333333333 347788888876310 0
Q ss_pred CCCceeeEEEEec
Q psy14674 143 FGIQKVDIIISEW 155 (519)
Q Consensus 143 ~~~~~~D~Ivs~~ 155 (519)
...++.|++|.+.
T Consensus 130 ~~~g~iD~lV~nA 142 (300)
T PRK06128 130 KELGGLDILVNIA 142 (300)
T ss_pred HHhCCCCEEEECC
Confidence 0014689999865
No 430
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=57.98 E-value=27 Score=35.35 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=45.3
Q ss_pred EEEEECCc-cc-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEceeeE
Q psy14674 81 IVLDIGCG-TG-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGKVEE 138 (519)
Q Consensus 81 ~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d~~~ 138 (519)
+||-+||| .| .++..++.+|.++++-+|.. + -++.|++.+++.+-.-+|+....++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47889998 34 45667888899999999853 1 134455555554433346666666654
Q ss_pred eecC-CCCceeeEEEEe
Q psy14674 139 VELP-FGIQKVDIIISE 154 (519)
Q Consensus 139 ~~~~-~~~~~~D~Ivs~ 154 (519)
.... .--.+||+|++.
T Consensus 81 ~~~~~~f~~~~DvVv~a 97 (312)
T cd01489 81 PDFNVEFFKQFDLVFNA 97 (312)
T ss_pred ccchHHHHhcCCEEEEC
Confidence 2111 001579999874
No 431
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.80 E-value=67 Score=31.95 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=59.3
Q ss_pred CEEEEECCccc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-------CC-C--------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-------NL-S--------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-------~~-~--------~~i~~~~~d~~~~~ 140 (519)
++|.=||+|.- .++..++++|. .|+..|.+ +.++.+.+.+..+ +. . .++++. .+.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLED-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHHH--
Confidence 46888999853 35556777776 89999999 5666654433221 21 1 113322 22221
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL 190 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 190 (519)
+ ...|+|+.... ........++..+...++|+.+++-+..++
T Consensus 81 ~----~~aD~Vieavp----e~~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 81 L----ADCDLVIEAAT----EDETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred h----cCCCEEEEcCc----CCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 1 45798876432 222345566777888899998887555553
No 432
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.64 E-value=47 Score=33.38 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=54.4
Q ss_pred CEEEEECCccc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-CCC----------CCcEEEEEceeeEeecCCCC
Q psy14674 80 KIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK-NNL----------SDVVTILKGKVEEVELPFGI 145 (519)
Q Consensus 80 ~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~-~~~----------~~~i~~~~~d~~~~~~~~~~ 145 (519)
++|.=||+|.- .++..+++.|. +|+++|.+ +.++.+++.+.. .+. ..++++. .+..+ .-
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~--~~--- 77 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAA--AV--- 77 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHH--Hh---
Confidence 46888999853 45556666676 89999998 566666553211 110 0111111 11111 11
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
...|+|+.... ........++..+..+++++.+++-+...
T Consensus 78 ~~aDlVi~av~----~~~~~~~~v~~~l~~~~~~~~ii~s~tsg 117 (311)
T PRK06130 78 SGADLVIEAVP----EKLELKRDVFARLDGLCDPDTIFATNTSG 117 (311)
T ss_pred ccCCEEEEecc----CcHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 45799876432 22223556677777777777666544444
No 433
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=57.44 E-value=24 Score=37.07 Aligned_cols=97 Identities=28% Similarity=0.365 Sum_probs=55.7
Q ss_pred CCCCEEEEECCc-ccHH-HHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 77 FKGKIVLDIGCG-TGIL-SMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 77 ~~~~~VLDiGcG-tG~l-s~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
..+++||=||.| .|.+ +..+++.|..+|+-+--. .+.|++.+++.+ ..++ ...++ +.....+|+|||.
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~----~~~~--~l~el--~~~l~~~DvViss 245 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLG----AEAV--ALEEL--LEALAEADVVISS 245 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhC----Ceee--cHHHH--HHhhhhCCEEEEe
Confidence 467899999999 7754 457777888788887766 234444444433 1111 12222 1112579999996
Q ss_pred cc-ccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 155 WM-GYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 155 ~~-~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.. .+......+++..+....+ .++.+.+.
T Consensus 246 Tsa~~~ii~~~~ve~a~~~r~~------~livDiav 275 (414)
T COG0373 246 TSAPHPIITREMVERALKIRKR------LLIVDIAV 275 (414)
T ss_pred cCCCccccCHHHHHHHHhcccC------eEEEEecC
Confidence 43 2333344455555444433 57766655
No 434
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=57.41 E-value=26 Score=36.18 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=32.9
Q ss_pred hcCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHH
Q psy14674 72 HNKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 72 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~ 118 (519)
....+.++.+||-.|+|. |.++..+|++ |+.+|+++|.+ +-++.|++
T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 179 NTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 345677899999999853 3455555555 77689999998 56666644
No 435
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=57.31 E-value=30 Score=35.58 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=51.4
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEc--eeeE-e-ecCCCC
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG--KVEE-V-ELPFGI 145 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~~~ 145 (519)
...+.++.+||-.|+|. |.++..+|++ |+..|++++.+ +-.+.+++ .|....+..... +..+ + .+..
T Consensus 178 ~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~~-- 251 (365)
T cd05279 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMTD-- 251 (365)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHhC--
Confidence 45667888999987642 2333344444 77678999977 55555543 333211111111 1100 0 1111
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccC-cCeEEEc
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLA-TNGLLFP 185 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~Lk-pgG~lip 185 (519)
+.+|+|+.. .+. . ..+....+.|+ ++|.++.
T Consensus 252 ~~~d~vid~-~g~----~----~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 252 GGVDYAFEV-IGS----A----DTLKQALDATRLGGGTSVV 283 (365)
T ss_pred CCCcEEEEC-CCC----H----HHHHHHHHHhccCCCEEEE
Confidence 468999752 221 1 12333446788 9998873
No 436
>PRK07904 short chain dehydrogenase; Provisional
Probab=57.26 E-value=43 Score=32.44 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=48.8
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-H-HHHHHHHHHHHCCCCCcEEEEEceeeEee-----cC--C
Q psy14674 76 LFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-N-IVEYAKEIVDKNNLSDVVTILKGKVEEVE-----LP--F 143 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-----~~--~ 143 (519)
...+++||-.|+++|+ ++..+++.|..+|+.++.+ + .++.+.+.++..+- .+++++.+|+.+.. .. .
T Consensus 5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHH
Confidence 3567799999998774 3444455554489999887 4 35555444554432 25888988886532 11 0
Q ss_pred CCceeeEEEEec
Q psy14674 144 GIQKVDIIISEW 155 (519)
Q Consensus 144 ~~~~~D~Ivs~~ 155 (519)
..+..|++|.+.
T Consensus 84 ~~g~id~li~~a 95 (253)
T PRK07904 84 AGGDVDVAIVAF 95 (253)
T ss_pred hcCCCCEEEEee
Confidence 014689888643
No 437
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=57.06 E-value=43 Score=33.49 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=52.1
Q ss_pred CCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceee
Q psy14674 74 KHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVD 149 (519)
Q Consensus 74 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D 149 (519)
..+.++.+||-.|+| .|..+..++++ |. +|++++.+ +..+.+++ .+.. .++...-.... ... +.+|
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~--~~~d 227 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAAA--GGAD 227 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhcc--CCCC
Confidence 456778899999987 55555555555 65 89999888 56655533 2321 12211111110 011 4589
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+++.... .. ..+....+.|+++|.++
T Consensus 228 ~vi~~~~-----~~----~~~~~~~~~l~~~G~~i 253 (330)
T cd08245 228 VILVTVV-----SG----AAAEAALGGLRRGGRIV 253 (330)
T ss_pred EEEECCC-----cH----HHHHHHHHhcccCCEEE
Confidence 8875321 11 12344457899999887
No 438
>PRK07877 hypothetical protein; Provisional
Probab=57.05 E-value=29 Score=39.45 Aligned_cols=77 Identities=12% Similarity=0.098 Sum_probs=48.4
Q ss_pred CCCEEEEECCcccH-HHHHHHHcCC-CEEEEEech--H-----------------HHHHHHHHHHHCCCCCcEEEEEcee
Q psy14674 78 KGKIVLDIGCGTGI-LSMFAAKSGA-ARVIGIECS--N-----------------IVEYAKEIVDKNNLSDVVTILKGKV 136 (519)
Q Consensus 78 ~~~~VLDiGcGtG~-ls~~la~~g~-~~V~gvD~s--~-----------------~~~~A~~~~~~~~~~~~i~~~~~d~ 136 (519)
...+|+-+|||-|. .+..++++|. ++++-+|.+ + -++.|++++.+-+-.-+|+.+...+
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 56799999999885 6678888995 898888753 1 1344555555444333466676655
Q ss_pred eEeecCCCCceeeEEEEe
Q psy14674 137 EEVELPFGIQKVDIIISE 154 (519)
Q Consensus 137 ~~~~~~~~~~~~D~Ivs~ 154 (519)
..-.+..-...+|+|+..
T Consensus 186 ~~~n~~~~l~~~DlVvD~ 203 (722)
T PRK07877 186 TEDNVDAFLDGLDVVVEE 203 (722)
T ss_pred CHHHHHHHhcCCCEEEEC
Confidence 432222111468999874
No 439
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=56.52 E-value=14 Score=37.63 Aligned_cols=98 Identities=26% Similarity=0.224 Sum_probs=51.4
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE-e-ecCCCCce
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE-V-ELPFGIQK 147 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~ 147 (519)
...+.++.+||-.|+|. |.++..+|++ |+.+|++++.+ +..+.+++ .|....+.....+..+ + .... .+.
T Consensus 167 ~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~-~~~ 241 (351)
T cd08233 167 RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTG-GGG 241 (351)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhC-CCC
Confidence 34567888999998641 2333344444 77689999887 55666543 2432111111111110 1 1111 134
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+|+-..- . ...+....+.|+++|.++
T Consensus 242 ~d~vid~~g-----~----~~~~~~~~~~l~~~G~~v 269 (351)
T cd08233 242 VDVSFDCAG-----V----QATLDTAIDALRPRGTAV 269 (351)
T ss_pred CCEEEECCC-----C----HHHHHHHHHhccCCCEEE
Confidence 899975321 0 112344457899999876
No 440
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.71 E-value=19 Score=36.53 Aligned_cols=95 Identities=27% Similarity=0.311 Sum_probs=47.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEe-ecCCCCceeeEE
Q psy14674 76 LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEV-ELPFGIQKVDII 151 (519)
Q Consensus 76 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~D~I 151 (519)
..++.+||-.|+|. |..+..++++ |..+|++++.++ -.+.+++ .|....+.....+...+ .+. ..+.+|+|
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~-~~~~vd~v 235 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSVT-DGTGVDVV 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHHc-CCCCCCEE
Confidence 35778888877653 3444455554 655788886663 3444333 34321111111111101 111 11468999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+.... .. .......+.|+++|.++
T Consensus 236 ld~~g-----~~----~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 236 LEMSG-----NP----KAIEQGLKALTPGGRVS 259 (341)
T ss_pred EECCC-----CH----HHHHHHHHHhccCCEEE
Confidence 76331 11 12333457889999887
No 441
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=55.64 E-value=29 Score=35.24 Aligned_cols=91 Identities=23% Similarity=0.299 Sum_probs=49.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeE----e-ecCCCCce
Q psy14674 76 LFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEE----V-ELPFGIQK 147 (519)
Q Consensus 76 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~----~-~~~~~~~~ 147 (519)
..++.+||-.|+|. |..+..+|++ |+++|++++.+ +-.+.+++ .|.. .++...-.+ + .... +.
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~--~~ 243 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAAG--GG 243 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHhC--CC
Confidence 34678899887642 3344444554 77789999887 45555533 3431 222221111 1 1111 36
Q ss_pred eeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 148 VDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 148 ~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+++... + .. ..+....+.|+++|.++
T Consensus 244 ~d~vid~~-g----~~----~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 244 VDAVIDFV-N----NS----ATASLAFDILAKGGKLV 271 (350)
T ss_pred CcEEEECC-C----CH----HHHHHHHHHhhcCCeEE
Confidence 89987522 1 11 12344457889999887
No 442
>PRK06172 short chain dehydrogenase; Provisional
Probab=55.18 E-value=51 Score=31.55 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c-------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L-------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~-------~~~ 144 (519)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+.. + ...
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357899999987764 4445666676 89999988 44444444444433 45888888886531 0 000
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|+||.+.
T Consensus 82 ~g~id~li~~a 92 (253)
T PRK06172 82 YGRLDYAFNNA 92 (253)
T ss_pred hCCCCEEEECC
Confidence 14679998755
No 443
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=55.09 E-value=42 Score=33.26 Aligned_cols=89 Identities=21% Similarity=0.185 Sum_probs=50.5
Q ss_pred EEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEeccc
Q psy14674 81 IVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157 (519)
Q Consensus 81 ~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~~~ 157 (519)
+|.=||+|. |.++..++++|. +|+++|.+ +.++.+.+ .|. +.....+. ... ...|+||....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~---~~~---~~aDlVilavp- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDL---SLL---KDCDLVILALP- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCH---hHh---cCCCEEEEcCC-
Confidence 466788874 456666667776 89999998 45555543 232 11111111 111 46799976443
Q ss_pred cccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674 158 YCLFYESMLDTVLYARDKWLATNGLLFPDKASL 190 (519)
Q Consensus 158 ~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 190 (519)
......++..+...++++ .++.+.+++
T Consensus 67 -----~~~~~~~~~~l~~~l~~~-~ii~d~~Sv 93 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPE-AIVTDVGSV 93 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCC-cEEEeCcch
Confidence 223445566666677766 455555553
No 444
>KOG1205|consensus
Probab=54.89 E-value=33 Score=34.21 Aligned_cols=77 Identities=27% Similarity=0.338 Sum_probs=51.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~ 145 (519)
.++.||-=||-+|+ ++..++++|+ +++-+-.. .-++...+.+++.+-.+++.++++|+.+.+- ...-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 68899999999995 6778888888 44444444 4444443333333333369999999987521 1112
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+..|++|.+.
T Consensus 90 g~vDvLVNNA 99 (282)
T KOG1205|consen 90 GRVDVLVNNA 99 (282)
T ss_pred CCCCEEEecC
Confidence 7899999975
No 445
>PRK10083 putative oxidoreductase; Provisional
Probab=54.84 E-value=40 Score=33.95 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=30.4
Q ss_pred cCCCCCCCEEEEECCcc-cHHHHHHHH-c-CCCEEEEEech-HHHHHHHH
Q psy14674 73 NKHLFKGKIVLDIGCGT-GILSMFAAK-S-GAARVIGIECS-NIVEYAKE 118 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGt-G~ls~~la~-~-g~~~V~gvD~s-~~~~~A~~ 118 (519)
.....++.+||-.|+|. |..+..+|+ . |+..+++++.+ +-.+.+++
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 34567889999999652 233444555 3 88789999987 45555543
No 446
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=54.73 E-value=34 Score=35.69 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=29.5
Q ss_pred CCCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHH
Q psy14674 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYA 116 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A 116 (519)
..+.++.+||-|.+|.....-++. ++.++|+|||+|+ .....
T Consensus 31 L~i~~~d~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLl 73 (380)
T PF11899_consen 31 LNIGPDDRVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALL 73 (380)
T ss_pred hCCCCCCeEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHH
Confidence 567899999999877544333444 4567999999994 44443
No 447
>PRK05876 short chain dehydrogenase; Provisional
Probab=54.25 E-value=49 Score=32.47 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=48.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c-------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L-------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~-------~~~ 144 (519)
..++++|-.|+++|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++..|+.+.. + ...
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457899999998774 4556666787 79999987 44444444444333 24778888886531 0 001
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.++.|++|.+.
T Consensus 81 ~g~id~li~nA 91 (275)
T PRK05876 81 LGHVDVVFSNA 91 (275)
T ss_pred cCCCCEEEECC
Confidence 14689998855
No 448
>PRK07035 short chain dehydrogenase; Provisional
Probab=53.86 E-value=53 Score=31.39 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=48.1
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 144 (519)
.++++||-.|+++|+ ++..+++.|. +|++++.+ +-++...+.+...+ .++.++..|+.+..- ...
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456789999999874 4556666787 89999988 44444444444333 246777777765410 000
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|++|...
T Consensus 83 ~~~id~li~~a 93 (252)
T PRK07035 83 HGRLDILVNNA 93 (252)
T ss_pred cCCCCEEEECC
Confidence 13589988754
No 449
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=53.65 E-value=56 Score=31.31 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=48.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 144 (519)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.++..+ .++.++.+|+.+..- ...
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 468899999987664 3445566687 89999988 54444444444433 347888888765310 001
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|.+|.+.
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 14678888754
No 450
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=53.56 E-value=70 Score=30.98 Aligned_cols=74 Identities=26% Similarity=0.255 Sum_probs=43.8
Q ss_pred EEEEECCc-cc-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEceeeE
Q psy14674 81 IVLDIGCG-TG-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGKVEE 138 (519)
Q Consensus 81 ~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d~~~ 138 (519)
+||-+||| .| .++..+++.|.++++.+|.+ + -++.|++++++.+..-+++.+..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 47889998 34 45667788899999988863 1 133344455444433346666666632
Q ss_pred e-ecC-CCCceeeEEEEe
Q psy14674 139 V-ELP-FGIQKVDIIISE 154 (519)
Q Consensus 139 ~-~~~-~~~~~~D~Ivs~ 154 (519)
. .+. .--.+||+|++.
T Consensus 81 ~~~~~~~f~~~~DvVi~a 98 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNA 98 (234)
T ss_pred hhhchHHHHhCCCEEEEC
Confidence 1 111 001579999873
No 451
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=53.14 E-value=31 Score=32.35 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS 110 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s 110 (519)
...+||=+|||. | ..+..+++.|.++++-+|..
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 357899999994 3 45667888899999998754
No 452
>PRK09186 flagellin modification protein A; Provisional
Probab=52.72 E-value=53 Score=31.40 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=46.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c----C---CCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L----P---FGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~----~---~~~ 145 (519)
++++||-.|++.|+ ++..+++.|. +|++++.+ +-++.+.+.+....-...+.++.+|+.+.. + . ...
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999987663 4455666677 89999887 444444444322211234677788887531 0 0 001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
++.|+||.+.
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 3489998765
No 453
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=52.56 E-value=49 Score=37.72 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=68.2
Q ss_pred CEEEEECCccc--HHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-------C-CC--------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-------N-LS--------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 140 (519)
++|--||+|+= .++..+|.+|. .|+.+|.+ +.++.+++++..+ | +. .+|+... +...
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~-- 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SYAG-- 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CHHH--
Confidence 47999999963 46667777887 99999999 6777766554321 1 10 1222221 1111
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcccccccc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~ 196 (519)
+ ...|+||=..+ ...+....++.++.+.++|+.++.-++.++-+..+-
T Consensus 390 ~----~~aDlViEav~----E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia 437 (714)
T TIGR02437 390 F----DNVDIVVEAVV----ENPKVKAAVLAEVEQHVREDAILASNTSTISISLLA 437 (714)
T ss_pred h----cCCCEEEEcCc----ccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 1 46888875432 333567788999999999999998887775554443
No 454
>PRK06125 short chain dehydrogenase; Provisional
Probab=52.44 E-value=56 Score=31.45 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee----cCCCCceee
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE----LPFGIQKVD 149 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~~~~D 149 (519)
.++++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+.... ..++.++..|+.+.. +-...++.|
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 57899999987763 4445666787 99999988 55544444443321 234778888876531 000115689
Q ss_pred EEEEec
Q psy14674 150 IIISEW 155 (519)
Q Consensus 150 ~Ivs~~ 155 (519)
++|.+.
T Consensus 84 ~lv~~a 89 (259)
T PRK06125 84 ILVNNA 89 (259)
T ss_pred EEEECC
Confidence 988754
No 455
>PRK14851 hypothetical protein; Provisional
Probab=52.43 E-value=25 Score=39.66 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=48.2
Q ss_pred CCCEEEEECCc-cc-HHHHHHHHcCCCEEEEEech--H------------------HHHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCG-TG-ILSMFAAKSGAARVIGIECS--N------------------IVEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcG-tG-~ls~~la~~g~~~V~gvD~s--~------------------~~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
.+.+|+-+||| .| ..+..+++.|.++++-+|.+ + -++.+++.+.+-+..-+|+.+...
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 56799999999 55 46778999999999988852 1 133344555444434457777666
Q ss_pred eeEeecCCCCceeeEEEE
Q psy14674 136 VEEVELPFGIQKVDIIIS 153 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs 153 (519)
+.+-....-...+|+||.
T Consensus 122 i~~~n~~~~l~~~DvVid 139 (679)
T PRK14851 122 INADNMDAFLDGVDVVLD 139 (679)
T ss_pred CChHHHHHHHhCCCEEEE
Confidence 643221111146999985
No 456
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=52.30 E-value=35 Score=35.12 Aligned_cols=91 Identities=24% Similarity=0.208 Sum_probs=47.8
Q ss_pred CCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-H-HHHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCCCceee
Q psy14674 75 HLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-N-IVEYAKEIVDKNNLSDVVTILKG-KVEEVELPFGIQKVD 149 (519)
Q Consensus 75 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~D 149 (519)
...++.+||-.|+|. |.++..+|++ |+ +|++++.+ + ..+.++ +.|.. .++.. +...+.... +.+|
T Consensus 180 ~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~--~~~D 249 (360)
T PLN02586 180 MTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN----RLGAD---SFLVSTDPEKMKAAI--GTMD 249 (360)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH----hCCCc---EEEcCCCHHHHHhhc--CCCC
Confidence 345788999998852 3444555555 66 78888877 3 223322 23432 12211 111111111 3478
Q ss_pred EEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 150 ~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+|+- ..+ .. . .+....+.|++||.++
T Consensus 250 ~vid-~~g----~~---~-~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 250 YIID-TVS----AV---H-ALGPLLGLLKVNGKLI 275 (360)
T ss_pred EEEE-CCC----CH---H-HHHHHHHHhcCCcEEE
Confidence 8874 332 11 1 2333457899999887
No 457
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=52.28 E-value=28 Score=34.93 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=42.4
Q ss_pred CCCEEEEECCcccHHHHHH----HHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cCCCCceeeEE
Q psy14674 78 KGKIVLDIGCGTGILSMFA----AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LPFGIQKVDII 151 (519)
Q Consensus 78 ~~~~VLDiGcGtG~ls~~l----a~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~D~I 151 (519)
.+++||-.|+ +|.++..+ ++.|. +|+++..+ .............+...+++++.+|+.+.. +......+|+|
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 4678999984 55554444 44466 78777655 322222222222233346889999987642 11001357988
Q ss_pred EEec
Q psy14674 152 ISEW 155 (519)
Q Consensus 152 vs~~ 155 (519)
|...
T Consensus 82 ih~A 85 (325)
T PLN02989 82 FHTA 85 (325)
T ss_pred EEeC
Confidence 8754
No 458
>PRK08862 short chain dehydrogenase; Provisional
Probab=52.01 E-value=55 Score=31.17 Aligned_cols=75 Identities=21% Similarity=0.266 Sum_probs=48.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c-------CCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L-------PFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~-------~~~~ 145 (519)
+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++..+..|..+.. . ....
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999985 5667777787 79999887 55555555454443 23566666655431 0 0011
Q ss_pred c-eeeEEEEec
Q psy14674 146 Q-KVDIIISEW 155 (519)
Q Consensus 146 ~-~~D~Ivs~~ 155 (519)
+ ++|++|.+.
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 3 789998865
No 459
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=51.93 E-value=38 Score=38.76 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=68.8
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEech-HHHHHHHHHHHHC-------C-CC--------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKN-------N-LS--------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~-------~-~~--------~~i~~~~~d~~~~~ 140 (519)
++|--||+|+ +.++..++.+|. .|+.+|.+ +.++.+.+++..+ | +. .++++.. |...
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~-- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTL-DYSG-- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-CHHH--
Confidence 5799999996 245666777777 99999999 6777766655321 1 11 1233221 2111
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCccccccccc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIED 197 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~~~~~i~~ 197 (519)
+ ...|+||=.. .........++.++.+.++|+.++.-++.++-+..+-.
T Consensus 412 ~----~~aDlViEAv----~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 460 (737)
T TIGR02441 412 F----KNADMVIEAV----FEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA 460 (737)
T ss_pred h----ccCCeehhhc----cccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 1 4678886432 33445677889999999999999988777755544433
No 460
>PRK07831 short chain dehydrogenase; Provisional
Probab=51.40 E-value=67 Score=30.99 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCCCCEEEEECC-cccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHH-CCCCCcEEEEEceeeEeec--------
Q psy14674 76 LFKGKIVLDIGC-GTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDK-NNLSDVVTILKGKVEEVEL-------- 141 (519)
Q Consensus 76 ~~~~~~VLDiGc-GtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~-~~~~~~i~~~~~d~~~~~~-------- 141 (519)
+.+++++|-.|+ |+|+ ++..+++.|+ +|+.++.+ +-++.+.+.++. .+ ..++.++.+|+.+..-
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHH
Confidence 345789999996 4553 4556666787 79999887 455555544443 22 1347788888765310
Q ss_pred CCCCceeeEEEEec
Q psy14674 142 PFGIQKVDIIISEW 155 (519)
Q Consensus 142 ~~~~~~~D~Ivs~~ 155 (519)
....++.|++|.+.
T Consensus 92 ~~~~g~id~li~~a 105 (262)
T PRK07831 92 VERLGRLDVLVNNA 105 (262)
T ss_pred HHHcCCCCEEEECC
Confidence 00014678888755
No 461
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=51.38 E-value=22 Score=36.47 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=50.5
Q ss_pred CCCCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCCC
Q psy14674 74 KHLFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFGI 145 (519)
Q Consensus 74 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 145 (519)
..+.++.+||-.|+| .|.++..++++ |+..|++++.+ +..+.+++ .+.. .++..+-.++ ... ..
T Consensus 183 ~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~~---~v~~~~~~~~~~~l~~~~-~~ 254 (367)
T cd08263 183 ADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGAT---HTVNAAKEDAVAAIREIT-GG 254 (367)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---eEecCCcccHHHHHHHHh-CC
Confidence 345678888877654 23344444444 77569999888 45555533 3331 2222221111 011 11
Q ss_pred ceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 146 ~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
..+|+|+...- .. ..+....+.|+++|.++
T Consensus 255 ~~~d~vld~vg-----~~----~~~~~~~~~l~~~G~~v 284 (367)
T cd08263 255 RGVDVVVEALG-----KP----ETFKLALDVVRDGGRAV 284 (367)
T ss_pred CCCCEEEEeCC-----CH----HHHHHHHHHHhcCCEEE
Confidence 56999986322 11 12344457899999887
No 462
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=51.37 E-value=1.1e+02 Score=30.47 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=58.1
Q ss_pred CEEEEECCcc-c-HHHHHHHHcCCCEEEEEech-HHHHHHHHHHH-------HCCCC---------CcEEEEEceeeEee
Q psy14674 80 KIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVD-------KNNLS---------DVVTILKGKVEEVE 140 (519)
Q Consensus 80 ~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~-------~~~~~---------~~i~~~~~d~~~~~ 140 (519)
++|-=||+|. | .++..++.+|. +|+++|.+ +.++.+++.+. +.+.- .++.+. .+.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNLEE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCHHH--
Confidence 4688899984 2 45556666775 99999999 56665554332 22210 011111 12211
Q ss_pred cCCCCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCCcc
Q psy14674 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASL 190 (519)
Q Consensus 141 ~~~~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~~ 190 (519)
+ ...|+|+.... ........++..+...++|+.+++-+..++
T Consensus 81 ~----~~aD~Vieav~----e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 81 L----RDADFIIEAIV----ESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred h----CCCCEEEEcCc----cCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 45798876432 233445667777888889988777556554
No 463
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=51.32 E-value=57 Score=31.41 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecC--------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELP--------FGI 145 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~ 145 (519)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++-.+.+.+.....+ .++.++.+|+.+.... ...
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 467899999998874 4555667787 7888877632333334443333 3578888888764210 001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|++|.+.
T Consensus 90 g~id~li~~a 99 (258)
T PRK06935 90 GKIDILVNNA 99 (258)
T ss_pred CCCCEEEECC
Confidence 3689988754
No 464
>PRK09072 short chain dehydrogenase; Provisional
Probab=51.06 E-value=57 Score=31.49 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC-------CCCc
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP-------FGIQ 146 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~-------~~~~ 146 (519)
+++++|-.|++.|+ ++..+++.|+ +|++++.+ +-++...+.+. ...++.++.+|+.+..-- ...+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 46789999988764 4556666787 89999988 44444433332 234588888888664200 0014
Q ss_pred eeeEEEEec
Q psy14674 147 KVDIIISEW 155 (519)
Q Consensus 147 ~~D~Ivs~~ 155 (519)
++|++|...
T Consensus 80 ~id~lv~~a 88 (263)
T PRK09072 80 GINVLINNA 88 (263)
T ss_pred CCCEEEECC
Confidence 579888754
No 465
>PRK07478 short chain dehydrogenase; Provisional
Probab=50.99 E-value=63 Score=30.97 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
+++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+.. .....
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 56789999988774 4556667787 89999887 44444444444433 34778888876531 00011
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|++|.+.
T Consensus 82 ~~id~li~~a 91 (254)
T PRK07478 82 GGLDIAFNNA 91 (254)
T ss_pred CCCCEEEECC
Confidence 4689998765
No 466
>PRK05866 short chain dehydrogenase; Provisional
Probab=50.21 E-value=62 Score=32.15 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=47.4
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~ 145 (519)
.+++||-.|++.|+ ++..+++.|. +|++++.+ +.++...+.+...+ .++.++.+|+.+... ....
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46789999987774 4445566676 89999988 55544444443332 347788888775310 0011
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+..|++|.+.
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 4689998754
No 467
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=49.87 E-value=25 Score=35.59 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=49.9
Q ss_pred CCCCCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceee-Ee-ecCCCCcee
Q psy14674 74 KHLFKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVE-EV-ELPFGIQKV 148 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~-~~-~~~~~~~~~ 148 (519)
..+.++.+||-.|+|. |..+..++++ |..+|++++.++ -.+.+++ .|....+.....+.. .+ .+.. ...+
T Consensus 162 ~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~-~~~~ 236 (345)
T cd08286 162 GKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTD-GRGV 236 (345)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhC-CCCC
Confidence 4567788888877631 2233334444 756899998873 4444443 343221221111110 01 1111 1469
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|+|+... + . ...+..+.+.|+++|.++
T Consensus 237 d~vld~~-g----~----~~~~~~~~~~l~~~g~~v 263 (345)
T cd08286 237 DVVIEAV-G----I----PATFELCQELVAPGGHIA 263 (345)
T ss_pred CEEEECC-C----C----HHHHHHHHHhccCCcEEE
Confidence 9997532 1 1 112444557899999987
No 468
>PRK07411 hypothetical protein; Validated
Probab=49.83 E-value=29 Score=36.38 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=48.1
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEech--HH------------------HHHHHHHHHHCCCCCcEEEEEce
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECS--NI------------------VEYAKEIVDKNNLSDVVTILKGK 135 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s--~~------------------~~~A~~~~~~~~~~~~i~~~~~d 135 (519)
...+||-+|||. | ..+..++++|.++++-+|.+ +. ++.|++++++.+..-+|+.+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 456899999993 3 46778889999999998863 11 33455555544433346666655
Q ss_pred eeEeecCCCCceeeEEEEe
Q psy14674 136 VEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 136 ~~~~~~~~~~~~~D~Ivs~ 154 (519)
+...........+|+|+..
T Consensus 117 ~~~~~~~~~~~~~D~Vvd~ 135 (390)
T PRK07411 117 LSSENALDILAPYDVVVDG 135 (390)
T ss_pred cCHHhHHHHHhCCCEEEEC
Confidence 5432111111569999874
No 469
>PRK06196 oxidoreductase; Provisional
Probab=49.69 E-value=43 Score=33.57 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~ 144 (519)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+.+. .+.++.+|+.+.. ....
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhc
Confidence 357899999987653 3445555677 89999887 44433332222 2677888887642 0111
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.++.|++|.+.
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 15689998865
No 470
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=49.44 E-value=1.1e+02 Score=27.92 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCCCCCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 74 KHLFKGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 74 ~~~~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
.....|++++-+|-|. | .++..+...|+ +|+-+|.++.... +..+ .|+ ++. ++++. + ...|++
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~al-qA~~--dGf----~v~--~~~~a-~----~~adi~ 82 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRAL-QAAM--DGF----EVM--TLEEA-L----RDADIF 82 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHH-HHHH--TT-----EEE---HHHH-T----TT-SEE
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHH-Hhhh--cCc----Eec--CHHHH-H----hhCCEE
Confidence 3456899999998774 2 24445555677 9999999972222 2222 343 332 23321 2 467999
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEEccCCc----ccccccccccCCCcccccceeEEecCCCcceee
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS----LFICGIEDLQGGQDHVVGQCVRVLFPDKASLFI 222 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~ 222 (519)
|+..-.......+. .+.||+|.++. +... +-...++..............++.+|++..+++
T Consensus 83 vtaTG~~~vi~~e~--------~~~mkdgail~-n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~G~~i~l 148 (162)
T PF00670_consen 83 VTATGNKDVITGEH--------FRQMKDGAILA-NAGHFDVEIDVDALEANAVEREEVRPQVDRYTLPDGRRIIL 148 (162)
T ss_dssp EE-SSSSSSB-HHH--------HHHS-TTEEEE-ESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEETTSEEEEE
T ss_pred EECCCCccccCHHH--------HHHhcCCeEEe-ccCcCceeEeeccccccCcEEEEcCCCeeEEEeCCCCEEEE
Confidence 88442111111111 24567776665 3222 111111111111222334566777777765555
No 471
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=49.33 E-value=20 Score=36.30 Aligned_cols=95 Identities=27% Similarity=0.290 Sum_probs=48.0
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHc-CCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeE-e-ecCCCCceeeE
Q psy14674 76 LFKGKIVLDIGCG-TGILSMFAAKS-GAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEE-V-ELPFGIQKVDI 150 (519)
Q Consensus 76 ~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~~~~D~ 150 (519)
..++.+||-.|+| .|..+..++++ |.+.|++++.++ -.+.+++ .+....+.....+..+ + .+. ..+.+|+
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~-~~~~~d~ 233 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT-DGEGVDV 233 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc-CCCCCCE
Confidence 4578888887764 23444445554 765588997763 4444433 3432111111111100 0 111 1146899
Q ss_pred EEEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 151 IISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 151 Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
|+.... .. ..+....+.|+++|.++
T Consensus 234 vld~~g-----~~----~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 234 FLEMSG-----AP----KALEQGLQAVTPGGRVS 258 (340)
T ss_pred EEECCC-----CH----HHHHHHHHhhcCCCEEE
Confidence 976321 11 12344457889999886
No 472
>PRK08589 short chain dehydrogenase; Validated
Probab=49.32 E-value=68 Score=31.28 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=47.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
.+++++|-.|++.|+ ++..+++.|+ +|++++.++.++...+.++..+ .++.++.+|+.+.. .....
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 357899999998874 4556666777 8999988743333333333332 34788888876531 00011
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
++.|++|.+.
T Consensus 81 g~id~li~~A 90 (272)
T PRK08589 81 GRVDVLFNNA 90 (272)
T ss_pred CCcCEEEECC
Confidence 4689998865
No 473
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.21 E-value=74 Score=30.43 Aligned_cols=76 Identities=21% Similarity=0.325 Sum_probs=48.4
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 144 (519)
..+++||-.|+++|+ ++..+++.|. +|++++.+ +-++.+.+.+...+ .++.++..|+.+..- ...
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence 357899999987774 4556666787 89999988 44444444444333 347888888865310 000
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.++.|+||...
T Consensus 80 ~g~~d~vi~~a 90 (258)
T PRK07890 80 FGRVDALVNNA 90 (258)
T ss_pred cCCccEEEECC
Confidence 14689998865
No 474
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=49.18 E-value=45 Score=33.61 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=51.4
Q ss_pred CEEEEECCcc--cHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEcee-----eEeecCCCCceeeEEE
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV-----EEVELPFGIQKVDIII 152 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~-----~~~~~~~~~~~~D~Iv 152 (519)
.+|+-||+|. |.++..++++|. .|+.+..++ .+. ...+|+. +.-..++. .-...+...+.+|+|+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~~----~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YEA----VRENGLQ--VDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HHH----HHhCCeE--EEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 5799999984 467777888775 788887764 111 2334421 11111110 0001111125789997
Q ss_pred EeccccccccchhHHHHHHHHhcccCcCeEEEccC
Q psy14674 153 SEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDK 187 (519)
Q Consensus 153 s~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~ 187 (519)
...-.+ ....++..+..++++++.+++-.
T Consensus 78 lavK~~------~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 78 VGLKTT------ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred EEecCC------ChHhHHHHHhhhcCCCCEEEEec
Confidence 643222 13445666677888998877443
No 475
>PRK06194 hypothetical protein; Provisional
Probab=49.10 E-value=64 Score=31.59 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=46.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-cC-------CCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-LP-------FGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~~-------~~~ 145 (519)
+++++|-.|++.|+ ++..+++.|+ +|+.+|.+ +.++...+.+...+ .++.++.+|+.+.. +. ...
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789988877653 4445666677 89999987 44444433333332 34788899887531 10 001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|+|+.+.
T Consensus 82 g~id~vi~~A 91 (287)
T PRK06194 82 GAVHLLFNNA 91 (287)
T ss_pred CCCCEEEECC
Confidence 3579998865
No 476
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=48.87 E-value=21 Score=31.01 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=36.2
Q ss_pred CCCEEEEECCccc-HHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEe
Q psy14674 78 KGKIVLDIGCGTG-ILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154 (519)
Q Consensus 78 ~~~~VLDiGcGtG-~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~ 154 (519)
...+|++||-|.= ..+..++++|. .|+++|+.+. .+. .| +.++..|+.+-.+.- -...|+|.|-
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~------~a~-~g----~~~v~DDif~P~l~i-Y~~a~lIYSi 77 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR------KAP-EG----VNFVVDDIFNPNLEI-YEGADLIYSI 77 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-----------S----TTEE---SSS--HHH-HTTEEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc------ccc-cC----cceeeecccCCCHHH-hcCCcEEEEe
Confidence 3449999999986 46778888885 9999999953 111 23 567888877632210 1468999983
No 477
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=48.73 E-value=25 Score=28.77 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=7.3
Q ss_pred ECCcccHHHHHH
Q psy14674 85 IGCGTGILSMFA 96 (519)
Q Consensus 85 iGcGtG~ls~~l 96 (519)
+-||+|.-+..+
T Consensus 7 vvCgsG~~TS~m 18 (94)
T PRK10310 7 VACGGAVATSTM 18 (94)
T ss_pred EECCCchhHHHH
Confidence 568888744433
No 478
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=48.64 E-value=28 Score=30.40 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=42.8
Q ss_pred CCCCCEEEEECCccc--HHHHHHHHcCCCEEEEEech-H-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEE
Q psy14674 76 LFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-N-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG--~ls~~la~~g~~~V~gvD~s-~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~I 151 (519)
..++++||=||+|.- .....++..|+++|+-+.-+ + +.+.+... .. ..+.++. ..++.-.. .++|+|
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~-~~----~~~~~~~--~~~~~~~~--~~~Div 79 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF-GG----VNIEAIP--LEDLEEAL--QEADIV 79 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH-TG----CSEEEEE--GGGHCHHH--HTESEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc-Cc----cccceee--HHHHHHHH--hhCCeE
Confidence 356899999999853 23445666799899999988 4 33333333 11 1244443 23322111 579999
Q ss_pred EEecc
Q psy14674 152 ISEWM 156 (519)
Q Consensus 152 vs~~~ 156 (519)
|+...
T Consensus 80 I~aT~ 84 (135)
T PF01488_consen 80 INATP 84 (135)
T ss_dssp EE-SS
T ss_pred EEecC
Confidence 98553
No 479
>PLN02780 ketoreductase/ oxidoreductase
Probab=48.47 E-value=63 Score=32.70 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=39.1
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceee
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~ 137 (519)
.|+.+|-.|+++|+ ++..+++.|+ +|+.++.+ +-++...+.++...-..++..+..|+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 47899999998884 5667777787 89999988 544444444433211224666777765
No 480
>PRK08251 short chain dehydrogenase; Provisional
Probab=48.21 E-value=72 Score=30.33 Aligned_cols=76 Identities=14% Similarity=0.092 Sum_probs=44.9
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCCc
Q psy14674 79 GKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGIQ 146 (519)
Q Consensus 79 ~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~~ 146 (519)
++++|-.|+..|+ ++..+++.|. +|+.++.+ +.++...+.+....-..++.++.+|+.+.. .....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4678988976653 3445556675 89999887 444444333333222235788888887641 011114
Q ss_pred eeeEEEEec
Q psy14674 147 KVDIIISEW 155 (519)
Q Consensus 147 ~~D~Ivs~~ 155 (519)
+.|++|.+.
T Consensus 81 ~id~vi~~a 89 (248)
T PRK08251 81 GLDRVIVNA 89 (248)
T ss_pred CCCEEEECC
Confidence 678888754
No 481
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.20 E-value=68 Score=30.44 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=46.3
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecC--------CCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELP--------FGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~--------~~~ 145 (519)
+++++|-.|+..|+ ++..+++.|. +|++++.+ +-++.+...+.. ..++.++.+|+.+..-- ...
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56789999987653 4455666677 79999988 444443333332 23478888887754110 001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|+||...
T Consensus 80 ~~~d~vi~~a 89 (251)
T PRK07231 80 GSVDILVNNA 89 (251)
T ss_pred CCCCEEEECC
Confidence 3679998855
No 482
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=48.10 E-value=66 Score=33.36 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=47.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HH-HHHHHHHHHHCCCCCcEEEEEc-eeeEeecCCCCceeeEE
Q psy14674 77 FKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NI-VEYAKEIVDKNNLSDVVTILKG-KVEEVELPFGIQKVDII 151 (519)
Q Consensus 77 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~-~~~A~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~~~~D~I 151 (519)
.++.+||-.|+|. |.++..+|++ |+ +|++++.+ +. .+.++ ..|.. .++.. +...+.... +.+|+|
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~--~~~D~v 246 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAV--GTMDFI 246 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhh--CCCcEE
Confidence 4788999998852 3444455555 76 79999877 42 34433 34432 12211 111111011 248888
Q ss_pred EEeccccccccchhHHHHHHHHhcccCcCeEEE
Q psy14674 152 ISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184 (519)
Q Consensus 152 vs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~li 184 (519)
+-. .+ . ...+....+.|++||.++
T Consensus 247 id~-~G----~----~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 247 IDT-VS----A----EHALLPLFSLLKVSGKLV 270 (375)
T ss_pred EEC-CC----c----HHHHHHHHHhhcCCCEEE
Confidence 752 21 1 112333447889999887
No 483
>KOG2811|consensus
Probab=48.10 E-value=49 Score=34.07 Aligned_cols=60 Identities=20% Similarity=0.405 Sum_probs=39.4
Q ss_pred CEEEEECCcccHHHHHHHHc-CCCEEEE---Eech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec
Q psy14674 80 KIVLDIGCGTGILSMFAAKS-GAARVIG---IECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL 141 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~-g~~~V~g---vD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~ 141 (519)
..+.++|||.|.++.+++.. +...++- +|-. .-...-++....+ +..++-+..|++++.+
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~--~~vi~R~riDI~dLkL 248 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKN--SLVIKRIRIDIEDLKL 248 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccC--cchhheeEeeHHhcCc
Confidence 58999999999999999886 5556666 7766 2222222222222 2346777788887743
No 484
>PRK05875 short chain dehydrogenase; Provisional
Probab=48.09 E-value=74 Score=30.92 Aligned_cols=77 Identities=16% Similarity=0.153 Sum_probs=45.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c----C---CCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L----P---FGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~----~---~~~ 145 (519)
+++++|-.|++.|+ ++..+++.|. +|++++.+ +-.+...+.+...+...++.++.+|+.+.. + . ...
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999977653 3445556677 89999987 433333333332221245788888886531 0 0 001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
++.|++|...
T Consensus 85 ~~~d~li~~a 94 (276)
T PRK05875 85 GRLHGVVHCA 94 (276)
T ss_pred CCCCEEEECC
Confidence 3679998754
No 485
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=47.98 E-value=74 Score=30.53 Aligned_cols=76 Identities=25% Similarity=0.395 Sum_probs=47.0
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
.+++++|-.|++.|+ ++..+++.|+ +|+.++.++......+.+...+ .++.++.+|+.+.. .....
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 357899999988774 4556667777 8999998743333333333322 34778888876631 00001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+.+|++|.+.
T Consensus 83 ~~id~lv~nA 92 (260)
T PRK12823 83 GRIDVLINNV 92 (260)
T ss_pred CCCeEEEECC
Confidence 4689998765
No 486
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=47.60 E-value=80 Score=24.88 Aligned_cols=37 Identities=35% Similarity=0.429 Sum_probs=18.3
Q ss_pred cCCCCCCCEEEEECCcccH-HHHHHHH---cCCCEEEEEech
Q psy14674 73 NKHLFKGKIVLDIGCGTGI-LSMFAAK---SGAARVIGIECS 110 (519)
Q Consensus 73 ~~~~~~~~~VLDiGcGtG~-ls~~la~---~g~~~V~gvD~s 110 (519)
...+..+++||-|||-+|+ ++..++. .|+ ..+||-..
T Consensus 33 ~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA-~TiGV~fE 73 (78)
T PF12242_consen 33 QGKINGPKKVLVIGASTGYGLASRIAAAFGAGA-DTIGVSFE 73 (78)
T ss_dssp C---TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE--
T ss_pred cCCCCCCceEEEEecCCcccHHHHHHHHhcCCC-CEEEEeec
Confidence 3445556899999999995 4433322 244 67776543
No 487
>KOG1208|consensus
Probab=47.59 E-value=76 Score=32.22 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=54.7
Q ss_pred CCCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCC
Q psy14674 76 LFKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPF 143 (519)
Q Consensus 76 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~ 143 (519)
...+++++--|+-+|+ .+..+|+.|+ +|+-.--+ +..+.+.+.+.......++.+++.|+.++. +..
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~ 110 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK 110 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 3456889999988885 5667788885 77777777 566666666665444566889999987752 111
Q ss_pred CCceeeEEEEec
Q psy14674 144 GIQKVDIIISEW 155 (519)
Q Consensus 144 ~~~~~D~Ivs~~ 155 (519)
...+.|+.|.+.
T Consensus 111 ~~~~ldvLInNA 122 (314)
T KOG1208|consen 111 KEGPLDVLINNA 122 (314)
T ss_pred cCCCccEEEeCc
Confidence 126789988855
No 488
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=47.53 E-value=21 Score=36.13 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=48.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHc-CCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEe-----ecCCCCcee
Q psy14674 77 FKGKIVLDIGCGT-GILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV-----ELPFGIQKV 148 (519)
Q Consensus 77 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~~~~ 148 (519)
.+|++||-.|+|. |..+..+|++ |+++|++++.+ +-.+.+++ .|.. .++..+-.++ .+.. .+.+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~---~~~~~~~~~~~~~~~~~~~-~~~~ 233 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT---RAVNVAKEDLRDVMAELGM-TEGF 233 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---EEecCccccHHHHHHHhcC-CCCC
Confidence 4678888887653 4444445554 77678888766 34444443 3332 1221111111 1111 1468
Q ss_pred eEEEEeccccccccchhHHHHHHHHhcccCcCeEEEc
Q psy14674 149 DIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFP 185 (519)
Q Consensus 149 D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip 185 (519)
|+|+.... .+ ..+....+.|+++|.++-
T Consensus 234 d~v~d~~g-----~~----~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 234 DVGLEMSG-----AP----SAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred CEEEECCC-----CH----HHHHHHHHHHhcCCEEEE
Confidence 98875221 11 123334578899998873
No 489
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=46.81 E-value=34 Score=35.88 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=25.9
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEec
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIEC 109 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~ 109 (519)
...+||-+|||. | ..+..++++|.++++.+|.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEF 74 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 456899999995 3 4677888899999998885
No 490
>PLN02494 adenosylhomocysteinase
Probab=46.76 E-value=1.1e+02 Score=33.03 Aligned_cols=132 Identities=20% Similarity=0.294 Sum_probs=65.5
Q ss_pred HHHHhcC-CCCCCCEEEEECCcc-cH-HHHHHHHcCCCEEEEEechH-HHHHHHHHHHHCCCCCcEEEEEceeeEeecCC
Q psy14674 68 NSMYHNK-HLFKGKIVLDIGCGT-GI-LSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPF 143 (519)
Q Consensus 68 ~ai~~~~-~~~~~~~VLDiGcGt-G~-ls~~la~~g~~~V~gvD~s~-~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~ 143 (519)
+.|.+.. ....|++|+-+|+|. |. .+..+...|+ +|+++|.++ -...|.. .|. .+. ++++. +
T Consensus 242 d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~----~G~----~vv--~leEa-l-- 307 (477)
T PLN02494 242 DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALM----EGY----QVL--TLEDV-V-- 307 (477)
T ss_pred HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHh----cCC----eec--cHHHH-H--
Confidence 3444432 236799999999995 32 2223333477 899999984 2223322 232 221 22221 1
Q ss_pred CCceeeEEEEeccccccccchhHHHHHHHHhcccCcCeEEEccCC---ccccccccccc-CCCcccccceeEEecCC-Cc
Q psy14674 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKA---SLFICGIEDLQ-GGQDHVVGQCVRVLFPD-KA 218 (519)
Q Consensus 144 ~~~~~D~Ivs~~~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~---~~~~~~i~~~~-~~~~~~~~~~~~~~~p~-~~ 218 (519)
...|+|+...- .. ..+.......+|+||+++--.. .+-...+.... .........+..+.+|+ +.
T Consensus 308 --~~ADVVI~tTG-----t~---~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~d~g~ 377 (477)
T PLN02494 308 --SEADIFVTTTG-----NK---DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPDTGS 377 (477)
T ss_pred --hhCCEEEECCC-----Cc---cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEcCCCCC
Confidence 35799986221 11 1112334478999998883222 11111111111 11112234556677787 76
Q ss_pred ceeee
Q psy14674 219 SLFIC 223 (519)
Q Consensus 219 ~~~~~ 223 (519)
.+|+.
T Consensus 378 ~i~ll 382 (477)
T PLN02494 378 GIIVL 382 (477)
T ss_pred EEEEE
Confidence 66654
No 491
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=46.56 E-value=38 Score=27.73 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=34.7
Q ss_pred CEEEEECCcccHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 80 ~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
++|| +-||+|.-+..+++ ..++.++++|++ +++...+..++.-.. ..+|+|+..+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~----------------k~~~~~~~~gi~--~~v~a~~~~~~~~~~--~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN----------------KMNKAAEEYGVP--VKIAAGSYGAAGEKL--DDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHH----------------HHHHHHHHCCCc--EEEEEecHHHHHhhc--CCCCEEEECc
Confidence 3555 67888866555543 445666778875 677777766542222 5689997644
No 492
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=46.39 E-value=81 Score=30.25 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=46.7
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
.+++||-.|+++|+ ++..+++.|+ +|+.++.+ +..+.+.+.++..+ .++.++..|+.+.. .....
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999988774 4445666677 78888877 44444444333322 34777888876542 01111
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|+++...
T Consensus 87 ~~~d~li~~a 96 (255)
T PRK06113 87 GKVDILVNNA 96 (255)
T ss_pred CCCCEEEECC
Confidence 4678888754
No 493
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=46.19 E-value=80 Score=31.68 Aligned_cols=91 Identities=21% Similarity=0.195 Sum_probs=50.8
Q ss_pred CEEEEECCcc--cHHHHHHHHcCC-CEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeecCCCCceeeEEEEec
Q psy14674 80 KIVLDIGCGT--GILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155 (519)
Q Consensus 80 ~~VLDiGcGt--G~ls~~la~~g~-~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~D~Ivs~~ 155 (519)
.+|.=||+|. +.++..+++.|. .+|+++|.+ +.++.+++ .|... . ...+..+ .. ...|+||...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~--~~---~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAE--AV---KGADLVILCV 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHH--Hh---cCCCEEEECC
Confidence 5788899886 234555656663 489999999 45555432 33321 1 1111111 11 4579998754
Q ss_pred cccccccchhHHHHHHHHhcccCcCeEEEccCCc
Q psy14674 156 MGYCLFYESMLDTVLYARDKWLATNGLLFPDKAS 189 (519)
Q Consensus 156 ~~~~l~~e~~l~~~l~~~~r~LkpgG~lip~~~~ 189 (519)
.. .....++..+...+++|+.++ +.++
T Consensus 75 p~------~~~~~v~~~l~~~l~~~~iv~-dvgs 101 (307)
T PRK07502 75 PV------GASGAVAAEIAPHLKPGAIVT-DVGS 101 (307)
T ss_pred CH------HHHHHHHHHHHhhCCCCCEEE-eCcc
Confidence 31 223445566667788887554 4444
No 494
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=46.17 E-value=23 Score=39.42 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=27.5
Q ss_pred CCCEEEEECCcc-c-HHHHHHHHcCCCEEEEEec
Q psy14674 78 KGKIVLDIGCGT-G-ILSMFAAKSGAARVIGIEC 109 (519)
Q Consensus 78 ~~~~VLDiGcGt-G-~ls~~la~~g~~~V~gvD~ 109 (519)
+..+||-+|||+ | ..+..|++.|.++++.||.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDN 370 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 467999999997 5 5778899999999999885
No 495
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=45.88 E-value=44 Score=33.32 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=34.1
Q ss_pred CCCCCCEEEEECCcccHHHHHHHHcCCCEEEEEechH-HHHHHHHHH
Q psy14674 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIV 120 (519)
Q Consensus 75 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~gvD~s~-~~~~A~~~~ 120 (519)
.+..|.+|.-||+|.-...-++++.++ +|.+||+++ .++.-+-++
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHH
Confidence 346788999999998777778888877 999999994 444444333
No 496
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=45.80 E-value=81 Score=30.47 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=49.3
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~ 144 (519)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+..+..+ .++.++.+|+.+..- ...
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 367899999998874 4556667787 78888887 44555555554433 347888888865310 001
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.+++|++|.+.
T Consensus 85 ~~~id~li~~a 95 (265)
T PRK07097 85 VGVIDILVNNA 95 (265)
T ss_pred CCCCCEEEECC
Confidence 14689998755
No 497
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.75 E-value=84 Score=29.78 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=45.2
Q ss_pred CCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEeec--------CCCC
Q psy14674 78 KGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVEL--------PFGI 145 (519)
Q Consensus 78 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~ 145 (519)
+++++|-.|++.|+ ++..+++.|. +|+.++.+ +-++.+.+.+...+ .++.++..|+.+..- ....
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999986653 3334555676 89999988 44444444444332 347778888654210 0001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
+++|+||...
T Consensus 81 ~~id~vi~~a 90 (253)
T PRK08217 81 GQLNGLINNA 90 (253)
T ss_pred CCCCEEEECC
Confidence 3578888754
No 498
>PRK08267 short chain dehydrogenase; Provisional
Probab=45.51 E-value=60 Score=31.23 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=45.1
Q ss_pred CEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee--------cCCC-Cc
Q psy14674 80 KIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE--------LPFG-IQ 146 (519)
Q Consensus 80 ~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~-~~ 146 (519)
+++|-.|++.|+ ++..+++.|+ +|++++.+ +.++.+.+... ..++.++++|+.+.. .... .+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 468889987763 4556666787 89999988 44444433322 235888999887641 1000 15
Q ss_pred eeeEEEEec
Q psy14674 147 KVDIIISEW 155 (519)
Q Consensus 147 ~~D~Ivs~~ 155 (519)
++|+||...
T Consensus 77 ~id~vi~~a 85 (260)
T PRK08267 77 RLDVLFNNA 85 (260)
T ss_pred CCCEEEECC
Confidence 789998754
No 499
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=45.36 E-value=84 Score=30.12 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHH-HHHHHHHHCCCCCcEEEEEceeeEee--------cCCCC
Q psy14674 79 GKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVE-YAKEIVDKNNLSDVVTILKGKVEEVE--------LPFGI 145 (519)
Q Consensus 79 ~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~-~A~~~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 145 (519)
+++||-.|++.|+ ++..+++.|+ +|+.++.+ +..+ .+.+.....+ ..++.++.+|+.+.. .....
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 79 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYG-EGMAYGFGADATSEQSVLALSRGVDEIF 79 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcC-CceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4689999976653 4445666676 89999988 4333 3333222222 124788888876531 00001
Q ss_pred ceeeEEEEec
Q psy14674 146 QKVDIIISEW 155 (519)
Q Consensus 146 ~~~D~Ivs~~ 155 (519)
++.|+||...
T Consensus 80 ~~id~vv~~a 89 (259)
T PRK12384 80 GRVDLLVYNA 89 (259)
T ss_pred CCCCEEEECC
Confidence 4678888754
No 500
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=45.19 E-value=85 Score=30.13 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=47.6
Q ss_pred CCCCEEEEECCcccH---HHHHHHHcCCCEEEEEech-HHHHHHHHHHHHCCCCCcEEEEEceeeEee-c-------CCC
Q psy14674 77 FKGKIVLDIGCGTGI---LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE-L-------PFG 144 (519)
Q Consensus 77 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gvD~s-~~~~~A~~~~~~~~~~~~i~~~~~d~~~~~-~-------~~~ 144 (519)
.+++++|-.|+..|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+ .++.++.+|+.+.. + ...
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999965543 3334555577 89999988 55555555554433 35778888887631 1 000
Q ss_pred CceeeEEEEec
Q psy14674 145 IQKVDIIISEW 155 (519)
Q Consensus 145 ~~~~D~Ivs~~ 155 (519)
.++.|.||...
T Consensus 87 ~~~id~vi~~a 97 (259)
T PRK08213 87 FGHVDILVNNA 97 (259)
T ss_pred hCCCCEEEECC
Confidence 13689998864
Done!