RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14674
(519 letters)
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 66.3 bits (162), Expect = 2e-13
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
VLD+GCGTG L++ A ARV G++ S +E A++ L+D V +LKG EE+
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAEEL- 59
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
P + D+IIS E + + AR L G+L
Sbjct: 60 PPEADESFDVIIS-DPPLHHLVEDLARFLEEARRL-LKPGGVLV 101
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 64.8 bits (159), Expect = 9e-12
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
K + GK VLD+GCG+GIL++ AAK GA +V+ ++ VE A+E + N + V +
Sbjct: 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLP 174
Query: 133 KGKVEEVELPFGIQKVDIII 152
+G K D+I+
Sbjct: 175 QGD----------LKADVIV 184
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 62.7 bits (153), Expect = 9e-11
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
K L KGK VLD+GCG+GIL++ AAK GA +V+G++ VE A+E N + +V
Sbjct: 158 KLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAK 217
Query: 133 KGKVEEV--ELPFGIQKVDIII 152
+ EV PF D+I+
Sbjct: 218 GFLLLEVPENGPF-----DVIV 234
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 57.4 bits (139), Expect = 6e-10
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 76 LFKGKIVLDIGCGTGILS-MFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
L G VLD+GCGTG L+ + A K G A V+GI+ S +E AKE K + V +
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFI 59
Query: 133 KGKVEEVE-LPFGIQKVDIIIS 153
+G +EE+ L D++IS
Sbjct: 60 QGDIEELPQLQLEDNSFDVVIS 81
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 54.2 bits (131), Expect = 3e-09
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 78 KGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
G VLDIGCGTG L++ A+ ARV G++ S ++E A+E K L +T ++G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA-KLALGPRITFVQGD 59
Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+ ++ D + G +LD + L G L
Sbjct: 60 AP--DALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 56.1 bits (136), Expect = 1e-08
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
L G +LDIGCG G L+++AA+ V+G+ S + YA++ + L D V +
Sbjct: 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRL 128
Query: 134 GKVEEVELPFGIQKVDIIIS----EWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+ E PF D I+S E +G Y+ V L G +
Sbjct: 129 QDYRDFEEPF-----DRIVSVGMFEHVGK-ENYDDFFKKV----YALLKPGGRML 173
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 55.7 bits (135), Expect = 1e-08
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAA-KSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
+ K +LD+G G G L + A ++ A+++G+E E A+ V N L + + ++
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 133 KGKVEEVELPFGIQKVDIIIS 153
+ ++E D+II
Sbjct: 101 EADIKEFLKALVFASFDLIIC 121
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 54.9 bits (133), Expect = 3e-08
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 11/78 (14%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSD--VVTILKG 134
G+ VLD+GCG+GIL++ A K GA +V+G++ + V AKE + N + V +
Sbjct: 160 PGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGD 219
Query: 135 KVEEVELPFGIQKVDIII 152
E K D+++
Sbjct: 220 LPEG--------KADVVV 229
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 51.2 bits (123), Expect = 2e-07
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 10/79 (12%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNL------SDVVT 130
+GK VLD+G GTGIL++ AA GA+RV+ ++ +E A+ ++ +D V+
Sbjct: 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVAD-VS 103
Query: 131 ILKGKVEEVEL--PFGIQK 147
+GK + V + PFG Q+
Sbjct: 104 DFRGKFDTVIMNPPFGSQR 122
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 49.4 bits (118), Expect = 2e-07
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
G VLD G G+G + AA++G ARV+G+E A+ + L+ V ++ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 137 EEV-ELPFGIQKVDIIIS 153
E+ ELP G D+++
Sbjct: 61 RELLELPDG--SFDLVLG 76
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 47.7 bits (114), Expect = 5e-07
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
+LD+GCGTG + A++G + V G++ S +E AKE + V + +
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPK--VRFVVADAR--D 56
Query: 141 LPFGIQKVDIIISEWMGYCLF 161
LPF D++I +
Sbjct: 57 LPFEEGSFDLVICAGLSLDYL 77
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 50.6 bits (121), Expect = 7e-07
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVV-TILKGK 135
K K V+D+GCG+GILS+ A K GAA+V+GI+ VE A++ + N +SD + L
Sbjct: 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL 218
Query: 136 VEEVELPFGIQKVDIII 152
+ +E D+I+
Sbjct: 219 EQPIEGKA-----DVIV 230
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 46.9 bits (112), Expect = 8e-07
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Query: 83 LDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVEL 141
LD+GCGTG+L+ A+ G ARV G++ ++ A++ + G E +L
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP-------RKFVVGDAE--DL 51
Query: 142 PFGIQKVDIIISEWM 156
PF + D+++S +
Sbjct: 52 PFPDESFDVVVSSLV 66
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 49.6 bits (119), Expect = 2e-06
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
K +LD+G G+G +++ AK G A VI ++ S + + A+E ++N L V+ +
Sbjct: 110 LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169
Query: 136 VEEVELPFGIQKVDIIIS 153
E + F D+I+S
Sbjct: 170 FEPLRGKF-----DLIVS 182
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 46.8 bits (112), Expect = 5e-06
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 20/99 (20%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVE 137
KG VL++G G+GI+++ AAK+G +V+G++ I YA E N + + +V
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVD---INPYAVECAKCNAKLNNIRNNGVEVI 78
Query: 138 EVEL--PFGIQKVDIII--------------SEWMGYCL 160
+L PF K D+I+ +W+ Y L
Sbjct: 79 RSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYAL 117
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 47.3 bits (113), Expect = 5e-06
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV 128
NK G VLD+GCG G+LS A+ GA V GI+ S +E AK K+ L +
Sbjct: 40 NKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKLHAKKDPLLKI 95
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 46.9 bits (112), Expect = 9e-06
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
L G +LDIGCG G L AA+ V+G+ S N ++A++ V L V +L
Sbjct: 59 GLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEVLL 118
Query: 134 GKVEEVELPFGIQKVDIIIS 153
+ + + D I+S
Sbjct: 119 QDYRDFD-----EPFDRIVS 133
>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 46.4 bits (110), Expect = 1e-05
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 53 HEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-N 111
H ++L+D R + +++ D+G G+GILS+ AA + A RVI IE
Sbjct: 11 HLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65
Query: 112 IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVL 170
A+E + + V + + D++I E MLDT L
Sbjct: 66 RARLAEENLHVPGDVNWEV-----VVGDARDYDFENADVVICE----------MLDTAL 109
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 46.1 bits (110), Expect = 1e-05
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 50 FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIE 108
FG+H +R ++ + G VLD+ CGTG +++ AKS G V+G++
Sbjct: 33 FGLH----------RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLD 82
Query: 109 -CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
+++E A+E + K + +V ++ G E LPF D + + + L
Sbjct: 83 ISESMLEVAREKLKKKGVQNVEFVV-GDAE--NLPFPDNSFDAVT---ISFGL 129
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 45.5 bits (109), Expect = 2e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 82 VLDIGCGTG-----ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGK 135
VLD+G G+G + ARV ++ S + A++ + L + V L+
Sbjct: 91 VLDLGTGSGAIALALAKERP----DARVTAVDISPEALAVARKNAARLGLDN-VEFLQSD 145
Query: 136 VEEVELPFGIQKVDIIIS 153
E P K D+I+S
Sbjct: 146 WFE---PLPGGKFDLIVS 160
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 45.3 bits (108), Expect = 3e-05
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKG 134
G VL+IG G G L+ AK A +V IE + E+ ++ V I++G
Sbjct: 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAAGN---VEIIEG 82
Query: 135 KVEEVELP 142
+V+LP
Sbjct: 83 DALKVDLP 90
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 44.8 bits (107), Expect = 5e-05
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 78 KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGK 135
+ VLD+G G+G ++ A + A V ++ S + A+ + V L+G
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGAR-VEFLQGD 166
Query: 136 VEEVELPFGIQKVDIIIS 153
E P + D+I+S
Sbjct: 167 WFE---PLPGGRFDLIVS 181
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 43.8 bits (104), Expect = 8e-05
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 73 NKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSNIVEY-AKEIVDKNNLSDVVT 130
K +F VLDIGCGTG L+ K A I + S + AK + +N V
Sbjct: 29 EKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSEN-----VQ 83
Query: 131 ILKGKVEEVELPFGIQKVDIIIS 153
+ G E +LP D+I+S
Sbjct: 84 FICGDAE--KLPLEDSSFDLIVS 104
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 43.4 bits (103), Expect = 1e-04
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 75 HLFKGKIVLDIGCGTGILSM-FAAKSGAA-RVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+ G VLD+GCG G + A + G RV+GI+ S ++ AKE + V
Sbjct: 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPN--VEF 73
Query: 132 LKGKVEEVELPFGIQKVDIIISE 154
++G + LPF D + S+
Sbjct: 74 VRGDAD--GLPFPDGSFDAVRSD 94
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 42.5 bits (100), Expect = 1e-04
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAA--KSGAARVIGIECS-NI 112
M K+E+R + L KG ++LDIGCGTG +++ A+ +V ++
Sbjct: 23 MTKEEIRALALSKL-----RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKA 77
Query: 113 VEYAKEIVDKNNLSDVVTILKGKVEEV 139
+ + +K + + + ++KG+ E+
Sbjct: 78 INLTRRNAEKFGVLNNIVLIKGEAPEI 104
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 42.8 bits (102), Expect = 1e-04
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 21/76 (27%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS--NI-------------VEY----AK 117
GK VLD+GCG GILS A+ GA V GI+ S NI ++Y A+
Sbjct: 47 LFGKRVLDVGCGGGILSESMARLGAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAE 105
Query: 118 EIVDKNNLS-DVVTIL 132
E+ ++ DVVT +
Sbjct: 106 ELAAEHPGQFDVVTCM 121
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 42.8 bits (102), Expect = 2e-04
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSG--AARVIGIE-CSNIVEYAKEIVDKNNLSDVVTIL 132
+ G VLD+ CGTG L++ AK+ V+G++ ++ +E + LS V +
Sbjct: 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFV 108
Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCL 160
+G E LPF D + + + L
Sbjct: 109 QGDAE--ALPFPDNSFDAVT---IAFGL 131
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 42.1 bits (99), Expect = 3e-04
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
K KGK VLD GCGTG+LS+ AK G A V ++ S +V+ A+ +++ V
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFE 109
Query: 133 KGKVEEVE 140
+ +
Sbjct: 110 VNDLLSLC 117
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 41.5 bits (98), Expect = 3e-04
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGK 135
G + DIG GTG +++ A +G + RVI IE +E + + + ++ +++G
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE-VVEGD 92
Query: 136 VEEVELPFGIQKVDII 151
E LP + D I
Sbjct: 93 APEA-LP-DLPSPDAI 106
>gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 42.1 bits (99), Expect = 3e-04
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 23/135 (17%)
Query: 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVE--YAKEIVDKNNLSDVVTILKGKV 136
+ +LD+GCGTG L+ A + A R+ G++ S N++ + K + D +++ V L+
Sbjct: 127 RRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLT 185
Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
+E + D+I++ L Y L+ + LA G LF +E
Sbjct: 186 QE--------RFDLIVA---ADVLPYLGALEGLFAGAAGLLAPGG--------LFAFSVE 226
Query: 197 DLQGGQDHVVGQCVR 211
L V+G R
Sbjct: 227 TLPDDGGFVLGPSQR 241
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 41.5 bits (98), Expect = 4e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
G VLD+GCG GILS A+ G A V GI+ S +E AK ++ ++ + +
Sbjct: 58 LPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVN--IDYRQAT 114
Query: 136 VEEVELPFGIQKVDIIIS 153
VE++ + D++
Sbjct: 115 VEDLA--SAGGQFDVVTC 130
>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 42.3 bits (100), Expect = 5e-04
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSD 127
GK VL++ TG S+ AA GA+ V ++ S +E+A+E + N L
Sbjct: 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG 267
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 41.2 bits (97), Expect = 7e-04
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
Query: 74 KHL--FKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVV 129
HL KG+ +LD+GCG G + M GAA V+GI+ S + E V K
Sbjct: 109 PHLSPLKGRTILDVGCGNGYHMWRMLGE--GAALVVGIDPSELFLCQFEAVRK------- 159
Query: 130 TILKGKVEEVELPFGIQKV------DIIISEWMGYCLFYESMLDTVLYARD 174
+L LP GI+++ D + S MG S LD +L +D
Sbjct: 160 -LLGNDQRAHLLPLGIEQLPALEAFDTVFS--MGVLYHRRSPLDHLLQLKD 207
>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family.
Members of this family are methyltransferases that mark
a widely distributed large conserved gene neighborhood
of unknown function. It appears most common in soil and
rhizosphere bacteria.
Length = 226
Score = 40.8 bits (96), Expect = 7e-04
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIEC 109
G VLDIGC G S+ + GA RV+GI+
Sbjct: 50 GWSVLDIGCNAGFYSIEMKRRGAGRVLGIDS 80
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 41.1 bits (97), Expect = 9e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAK----SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT 130
L G+ VLD+G G G AA+ +G +VIG++ + ++ A+ K ++ V
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTG--KVIGVDMTPEMLAKARANARKAGYTN-VE 131
Query: 131 ILKGKVEEVELPFGIQKVDIIIS 153
G++E + + VD+IIS
Sbjct: 132 FRLGEIEALPVADNS--VDVIIS 152
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 39.4 bits (92), Expect = 0.001
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVE------YAKEIVDKNNLSD 127
L G VLDIGCGTGIL + G V G++ S A + D
Sbjct: 18 PRLKPGGRVLDIGCGTGILLRLLRERG-FDVTGVDPSPAAVLIFSLFDAPDPAVLAGKYD 76
Query: 128 VVT 130
++T
Sbjct: 77 LIT 79
>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase.
Length = 170
Score = 39.6 bits (93), Expect = 0.001
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 74 KHLFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSD--VVT 130
+ G VL++G GTG++ A A V + +E K+ ++ N LS
Sbjct: 40 GNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEEAIELMKKNIELNGLSSKVTAK 99
Query: 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESML 166
+L + + F VD+I+ C++ E
Sbjct: 100 VLDWGEDLPDDVFDPHPVDLIL---AADCVYNEDSF 132
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 40.0 bits (94), Expect = 0.002
Identities = 31/94 (32%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI--VEYAKEIVDKNNLSDVVTILKGKV 136
G+ VLD+ G G S+ AK G +V I+ N VEY KE + N + V + G
Sbjct: 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDI-NPDAVEYLKENIRLNKVEGRVEPILGDA 247
Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVL 170
EV G D II MG L L
Sbjct: 248 REVAPELG--VADRII---MGLPKSAHEFLPLAL 276
>gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 40.4 bits (95), Expect = 0.002
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
L G+ VLD+ CG G + AK +V G+E S VE A+E N + + V + G
Sbjct: 291 LAGGERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAG 348
Query: 135 KVEEV 139
EE
Sbjct: 349 DAEEF 353
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 39.9 bits (90), Expect = 0.002
Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 19/231 (8%)
Query: 29 DENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCG 88
+ Y + ++ + + + + L G VLDIGCG
Sbjct: 2 SLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLL---RLLPGGLGVLDIGCG 58
Query: 89 TGILSMFAAKSGA-ARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPF-GI 145
TG L++ A G A V+G++ S + A+ + L V ++ LPF
Sbjct: 59 TGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV-ADALGGVLPFEDS 117
Query: 146 QKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHV 205
D++IS + + L + L G + G +
Sbjct: 118 ASFDLVISL----LVLHLLPPAKALRELLRVLKPGG--------RLVLSDLLRDGLLEGR 165
Query: 206 VGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
+ + P I + + + + + + +++ +
Sbjct: 166 LAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLAR 216
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 39.6 bits (93), Expect = 0.002
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
+ G VL+ G G+G L+ + A++ V E + + A+E + + L D VT+
Sbjct: 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLK 151
Query: 133 KGKVEEVELPFGIQKVDIII 152
G V E + VD +
Sbjct: 152 LGDVREGIDE---EDVDAVF 168
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 38.7 bits (91), Expect = 0.002
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
+G VLD+ G+G L + A GAARV+ +E V+ KE + L +L+
Sbjct: 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101
Query: 136 VEE 138
Sbjct: 102 ALR 104
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 37.0 bits (86), Expect = 0.003
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 83 LDIGCGTG-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
LDIGCGTG +L G++ S +E A E + L ++ V +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGL-LDAVRVRLDVLDAI 59
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLL 183
D+++ L + + VL + L G+L
Sbjct: 60 DLDP-GSFDVVV---ASNVLHHLADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 38.9 bits (91), Expect = 0.003
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKE 118
L G+ VLD+ G+G L++ AA +GA V ++ V A+
Sbjct: 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL 77
>gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 38.5 bits (90), Expect = 0.004
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 79 GKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
G++V+D+ G G S+ AK A RV +E + V+Y KE + N + V++ + G V
Sbjct: 101 GEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDV 160
Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVL 170
+V L D +I M LD L
Sbjct: 161 RDVILE---GVADRVI---MNLPKSAHEFLDKAL 188
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 37.9 bits (89), Expect = 0.007
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKE 118
G +LD GCG G LS+ A+ G A+V+ + S +VE A+E
Sbjct: 63 TGLRILDAGCGVGSLSIPLARRG-AKVVASDISPQMVEEARE 103
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 37.2 bits (87), Expect = 0.007
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 82 VLDIGCGTGILSMFAAK-SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV 139
VLD+GCG G+L AK S V ++ + +E A+ + N L + V
Sbjct: 35 VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYSAV 94
Query: 140 ELPFGIQKVDIIIS 153
E K D+IIS
Sbjct: 95 E----PGKFDLIIS 104
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 37.9 bits (89), Expect = 0.009
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 75 HLF--KGKIVLDIGCGTGILSMF-AAKSGAARVIGIE 108
HL KG+ VLD+GCG G M+ +GA V+GI+
Sbjct: 117 HLSPLKGRTVLDVGCGNG-YHMWRMLGAGAKLVVGID 152
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 37.2 bits (87), Expect = 0.012
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 49 HFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE 108
+F I + ++ V ++ G VL+IG G G L+ + AARV IE
Sbjct: 11 NFLIDKNVIDKIVEAA----------NISPGDNVLEIGPGLGALTEPLLER-AARVTAIE 59
Query: 109 CSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
+ E KE D +T++ G + + P Q ++
Sbjct: 60 IDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLAQPYKVV 100
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 37.3 bits (87), Expect = 0.014
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 69 SMYHNKHLFKGKIVLDIGCGTGILSM-FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS 126
S H +LD+G G+G +++ A + A VI ++ S + + A+E +KN L
Sbjct: 111 SQNPILH------ILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE 164
Query: 127 DVVTILKGKVEEVELPFGIQKVDIIIS 153
V ++ + E P QK+DII+S
Sbjct: 165 HRVEFIQSNLFE---PLAGQKIDIIVS 188
>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This
protein family was first proposed to be RNA
methyltransferases by homology to the TrmA family. The
member from E. coli has now been shown to act as the 23S
RNA methyltransferase for the conserved U1939. The gene
is now designated rumA and was previously designated
ygcA [Protein synthesis, tRNA and rRNA base
modification].
Length = 431
Score = 36.7 bits (85), Expect = 0.023
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEV- 139
V+D CG G ++ AK A V+GIE VE A++ + N +++ V L G +E V
Sbjct: 296 VVDAYCGVGTFTLPLAK-QAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVL 353
Query: 140 -ELPFGIQKVDIII 152
+ P+ Q D+++
Sbjct: 354 PKQPWAGQIPDVLL 367
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 36.1 bits (84), Expect = 0.028
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 68 NSMYHNKHLFKGKIVLDIGCGT-GILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNL 125
+++ L G VL +G G G+L+ AK+ ARVI + S+ +E AKE+
Sbjct: 124 HALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA 179
Query: 126 SDVVTILKGKVEEVELPFGIQKVDIII 152
V+ + +EE G D++I
Sbjct: 180 DHVIDYKEEDLEEELRLTGGGGADVVI 206
>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase. L-threonine dehydrogenase
(TDH) catalyzes the zinc-dependent formation of
2-amino-3-ketobutyrate from L-threonine via NAD(H)-
dependent oxidation. THD is a member of the
zinc-requiring, medium chain NAD(H)-dependent alcohol
dehydrogenase family (MDR). MDRs have a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
the major enzymes in the interconversion of alcohols and
aldehydes, or ketones. The N-terminal region typically
has an all-beta catalytic domain. These proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria) and have 2 tightly bound
zinc atoms per subunit. Sorbitol and aldose reductase
are NAD(+) binding proteins of the polyol pathway, which
interconverts glucose and fructose.
Length = 341
Score = 36.4 bits (85), Expect = 0.029
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 79 GKIVLDIGCG-TGILSMFAAK-SGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV 136
GK VL GCG G++++ AK +GA+ VI + Y E+ K V+ + V
Sbjct: 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASD---PNPYRLELAKKMGADVVINPREEDV 220
Query: 137 EEVELPFGIQKVDII 151
EV+ VD++
Sbjct: 221 VEVKSVTDGTGVDVV 235
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 34.6 bits (80), Expect = 0.031
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 56 MLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GAARVIGIECS-NIV 113
M K EVR +T L G ++ DIG GTG +++ AA+ RV IE + +
Sbjct: 2 MTKREVRALTLSKL-----RLRPGDVLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEAL 56
Query: 114 EYAKEIVDKNNLSDVVTI 131
+ + + + +S++V +
Sbjct: 57 DLIERNLRRFGVSNIVIV 74
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 35.1 bits (81), Expect = 0.047
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK 135
+GK VLD+G G+G++++ AA++GAA V+ + I + ++ + N ++ V+I
Sbjct: 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAAD---IDPWLEQAIRLNAAANGVSI---L 130
Query: 136 VEEVELPFGIQKVDIII 152
+L D+++
Sbjct: 131 FTHADLIGSPPAFDLLL 147
>gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 245
Score = 34.9 bits (81), Expect = 0.059
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE 108
+ KGK+VLDIG TG + + GA V ++
Sbjct: 73 EFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
>gnl|CDD|147134 pfam04823, Herpes_UL49_2, Herpesvirus UL49 tegument protein.
Length = 96
Score = 33.1 bits (76), Expect = 0.068
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 319 KRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGM------------QPNPRNN 366
K + FST P++ + W+ N+ + E VG PR N
Sbjct: 14 KGLAFSTTPKSPTSPWRGATHAFNKRVFC----EAVGRVAAAHARLAAAALWDLNPPRTN 69
Query: 367 RDLD-FTVEVNFKGELCE 383
+LD F + +CE
Sbjct: 70 EELDRFLERAVIRITVCE 87
Score = 33.1 bits (76), Expect = 0.068
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 17/78 (21%)
Query: 445 KRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGM------------QPNPRNN 492
K + FST P++ + W+ N+ + E VG PR N
Sbjct: 14 KGLAFSTTPKSPTSPWRGATHAFNKRVFC----EAVGRVAAAHARLAAAALWDLNPPRTN 69
Query: 493 RDLD-FTVEVNFKGELCE 509
+LD F + +CE
Sbjct: 70 EELDRFLERAVIRITVCE 87
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 34.7 bits (80), Expect = 0.068
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 76 LFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT 130
L G VL+IG G+G + + G V+ IE +VE A+ ++K L +V+
Sbjct: 71 LKPGMRVLEIGSGSGYLTACFARMVGEVG--LVVSIEHIPELVEIARRNLEKLGLENVIV 128
Query: 131 I 131
+
Sbjct: 129 V 129
>gnl|CDD|129570 TIGR00478, tly, hemolysin TlyA family protein. Hemolysins are
exotoxins that attack blood cell membranes and cause
cell rupture, often by forming a pore in the membrane.
At least two members of this protein family have been
characterized indirectly as pore-forming hemolysins, one
from the spirochete Serpula (Treponema) hyodysenteriae
and one from Mycobacterium tuberculosis. However,
homology domains in this protein suggest
methyltransferase activity (pfam01728) and RNA-binding
activity (pfam01479) [Unknown function, General].
Length = 228
Score = 34.8 bits (80), Expect = 0.070
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS 110
K KIVLD+G TG + A + GA V G++
Sbjct: 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVG 107
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 34.5 bits (80), Expect = 0.082
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTI 131
G VL+IG G+G + A+ RV+ IE + E A+ ++ +V
Sbjct: 72 PGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYENVTVR 125
>gnl|CDD|225319 COG2521, COG2521, Predicted archaeal methyltransferase [General
function prediction only].
Length = 287
Score = 33.9 bits (78), Expect = 0.15
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDV-VTILKGK 135
+G+ VLD G G ++ A + GA VI +E N++E AK L ++ + I+ G
Sbjct: 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGD 193
Query: 136 VEEVELPFGIQKVDIII 152
EV F + D II
Sbjct: 194 AYEVVKDFDDESFDAII 210
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 34.1 bits (79), Expect = 0.15
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 28/92 (30%)
Query: 73 NKHLFKGKIVLDIGCGTGIL-SMFAAKSGAARVIGIECSNI----VEYAKEIVDKNNL-- 125
H KGK VLD+GCG G+L ++ A S R+ S++ +E ++ + N L
Sbjct: 193 TPHT-KGK-VLDVGCGAGVLSAVLARHSPKIRLT---LSDVSAAALESSRATLAANGLEG 247
Query: 126 ----SDVVTILKGKVEEVELPFGIQKVDIIIS 153
S+V + +KG+ F D+IIS
Sbjct: 248 EVFASNVFSDIKGR-------F-----DMIIS 267
>gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 34.1 bits (78), Expect = 0.16
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAA 102
G V D GCGTG L++ A GA
Sbjct: 144 AGVTVCDAGCGTGSLAIPLALEGAI 168
>gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase;
Provisional.
Length = 383
Score = 33.7 bits (78), Expect = 0.21
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGI 107
VLDIGCG G L+ +AA+ V+G+
Sbjct: 171 VLDIGCGWGGLARYAAEHYGVSVVGV 196
>gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 183
Score = 33.0 bits (76), Expect = 0.21
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
G VLD+ G+G L + A GAA V+ +E V KE ++ L +L+
Sbjct: 44 GARVLDLFAGSGALGLEALSRGAASVVFVEKDKKAVATLKENLEALGLEGETAVLRN 100
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 32.3 bits (74), Expect = 0.22
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 81 IVLDIGCGTGILSMFAAKSGA-ARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+V+D+G G S++ A+ GA RVI E + E +E V NNL +VV +
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLL 53
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 33.0 bits (76), Expect = 0.22
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 79 GKIVLDIGCGTGILSMFAA-KSGAARVIGI---ECSNI--VEYAKE-IVDKNNLSDVVTI 131
GK VLD+G G S + GA +V+ + I V + + I D L + +
Sbjct: 23 GKTVLDLGAAPGGFSQVLLERGGAGKVVAVDLGPMEPIQGVYFLRGDITDPETLEKLREL 82
Query: 132 LKGKV 136
L GKV
Sbjct: 83 LPGKV 87
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 33.0 bits (76), Expect = 0.34
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 76 LFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILK 133
GK VLD+GCG G+L + A KS A++ ++ + VE A++ + N + +
Sbjct: 157 DLGGK-VLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215
Query: 134 GKVEEVELPFGIQKVDIIIS 153
E VE K D+IIS
Sbjct: 216 NLYEPVE-----GKFDLIIS 230
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 32.6 bits (75), Expect = 0.39
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
VL+IG G G L+ K A +V IE + E ++++ + I++G +V+
Sbjct: 33 VLEIGPGLGALTEPLLKR-AKKVTAIEIDRRLAERLRKLLSLYE---NLEIIEGDALKVD 88
Query: 141 LP 142
L
Sbjct: 89 LN 90
>gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase.
Length = 340
Score = 32.8 bits (75), Expect = 0.42
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 80 KIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVT 130
K ++D+GCG G S + A+ A V GI S + A + LSD V+
Sbjct: 120 KRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVS 171
>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 172
Score = 31.5 bits (72), Expect = 0.60
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI----VEYAKEIVDKNNLSDVVTILKG 134
G +LD CG+G + + AA GA S+I V+ A+ + + D + ++
Sbjct: 29 GDPLLDPMCGSGTILIEAALMGANIAPLY-GSDIDWRMVQGARINAENAGVGDKIEFVQA 87
Query: 135 KVEEVELPFGIQKVDIIIS 153
++ L G VD I++
Sbjct: 88 DAAKLPLLNG--SVDAIVT 104
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 31.5 bits (72), Expect = 0.71
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAAR--VIGIE-CSNIVEYAKEIVDKNNLSDVVTILK 133
FKG+ VLD+ CGTG L++ AKS R V G++ S ++E AK+ K+ L + ++
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKK---KSELPLNIEFIQ 94
Query: 134 GKVEEVELPFGIQKVDII 151
E LPF D +
Sbjct: 95 ADAE--ALPFEDNSFDAV 110
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 32.1 bits (73), Expect = 0.83
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 45 DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGI-LSMFAAKSGAAR 103
D+Y F E L+ + + + KG ++D+G G G+ L M ++ R
Sbjct: 388 DAYDRFHNEEVYLEHMNSSADDKRIILD---YIKGDTIVDVGAGGGVMLDMIEEETEDKR 444
Query: 104 VIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
+ GI+ S N+++ K+ K N ++KG + F + VD I+
Sbjct: 445 IYGIDISENVIDTLKK--KKQNEGRSWNVIKGDAINLSSSFEKESVDTIV 492
>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 235
Score = 31.5 bits (72), Expect = 0.84
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 17/109 (15%)
Query: 77 FKGKIVLDIGCGTGI----LSMFAAKSGAARVIGIECSNIVEYAKEI-VDKNNLSDVVTI 131
F K VL G +GI F A+ A+V G++ + + + + +LSD +
Sbjct: 3 FMTKTVLITGAASGIGLAQARAFLAQG--AQVYGVDKQDKPDLSGNFHFLQLDLSDDLEP 60
Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATN 180
L V VDI+ + G Y+ +LDT L TN
Sbjct: 61 LFDWV---------PSVDILCNT-AGILDDYKPLLDTSLEEWQHIFDTN 99
>gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase.
Length = 322
Score = 31.6 bits (71), Expect = 0.84
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 24/131 (18%)
Query: 2 SSRIISRSGYDAKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEV 61
SS + K+SN S S +E+ + D ++ S F +M +
Sbjct: 50 SSSHPKMQTLEGKASNKSRSTSTTTSLNEDELAKFSAIADTWWHSEGPFKPLHQM--NPT 107
Query: 62 RTMTYRNSMYHNKHL---------FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI 112
R R+++ +H F+G +DIGCG G+LS A+ GA V G++
Sbjct: 108 RLAFIRSTLC--RHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGAT-VTGVDA--- 161
Query: 113 VEYAKEIVDKN 123
VDKN
Sbjct: 162 -------VDKN 165
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 32.0 bits (73), Expect = 0.85
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKE 118
G+ VLD+GCG G + A++ V+GI+ S N++ +A E
Sbjct: 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALE 307
Score = 29.3 bits (66), Expect = 5.1
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGK 135
++GK VL++G G G + AK A +VI ++ ++++ + I N V +
Sbjct: 36 YEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESI---NGHYKNVKFMCAD 91
Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD--KWLATNGLLF 184
V +L VD+I S W+ L Y S + A KWL G +F
Sbjct: 92 VTSPDLNISDGSVDLIFSNWL---LMYLSDKEVENLAERMVKWLKVGGYIF 139
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 31.5 bits (72), Expect = 1.0
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 82 VLDIGCGTG-ILSMFAAKSGAARVIGIECS 110
VLD+GCG G +L + A+ R+ G++ S
Sbjct: 286 VLDLGCGEGKLLRLLLAEKQFERIAGVDVS 315
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 30.9 bits (70), Expect = 1.2
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 26 DSKDENVQ--CEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVL 83
+SK+E V E + + +S F H++ KD ++ M + G L
Sbjct: 1 ESKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQ----------AGTSAL 50
Query: 84 DIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
D+ CGT +++ A VIG++ S N++ ++ V L + V ++ G +E
Sbjct: 51 DVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNA--ME 107
Query: 141 LPF 143
LPF
Sbjct: 108 LPF 110
>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde
dehydrogenase related proteins, child 1. Members
identified as glutathione-dependent formaldehyde
dehydrogenase(FDH), a member of the
zinc-dependent/medium chain alcohol dehydrogenase
family. FDH converts formaldehyde and NAD(P) to formate
and NAD(P)H. The initial step in this process the
spontaneous formation of a S-(hydroxymethyl)glutathione
adduct from formaldehyde and glutathione, followed by
FDH-mediated oxidation (and detoxification) of the
adduct to S-formylglutathione. MDH family uses NAD(H)
as a cofactor in the interconversion of alcohols and
aldehydes, or ketones. Like many zinc-dependent alcohol
dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), these FDHs form
dimers, with 4 zinc ions per dimer. The medium chain
alcohol dehydrogenase family (MDR) has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 386
Score = 31.4 bits (72), Expect = 1.4
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 78 KGKIVLDIGCG-TGILSMFAAKS-GAARVIGIE-CSNIVEYAK-----EIVDKNNLSDVV 129
G V GCG G+ + +AK GA RVI I+ +E A+ E ++ + DVV
Sbjct: 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVV 243
Query: 130 TILK 133
L+
Sbjct: 244 EALR 247
>gnl|CDD|225258 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 30.7 bits (70), Expect = 1.6
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
+G + DIG L ++ K+ A+ + E +E A V KNNLS+ + + G
Sbjct: 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGD 75
Query: 136 V-EEVELPFGIQKVDIIISEWMG 157
+EL ++D+I+ MG
Sbjct: 76 GLAVLELE---DEIDVIVIAGMG 95
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 30.7 bits (69), Expect = 1.6
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 28/111 (25%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
VLDIG G G + + A V G++ C +V AK N K+E
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKN----------KIE--- 102
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
+ DI+ + F E+ D ++Y+RD L L + DK LF
Sbjct: 103 ----FEANDILKKD------FPENTFD-MIYSRDAILH---LSYADKKKLF 139
>gnl|CDD|183494 PRK12390, PRK12390, 1-aminocyclopropane-1-carboxylate deaminase;
Provisional.
Length = 337
Score = 30.8 bits (70), Expect = 1.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 90 GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
G++ FAA A RVIGI+ S E + V+ I + E VEL I + D
Sbjct: 205 GMVVGFAADGRARRVIGIDASAKPEQTRA--------QVLRIARNTAELVELGRDITEDD 256
Query: 150 IIISEWMGY 158
+++ E
Sbjct: 257 VVLDERYAG 265
>gnl|CDD|202783 pfam03848, TehB, Tellurite resistance protein TehB.
Length = 192
Score = 30.2 bits (68), Expect = 1.7
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 30/110 (27%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
DY+ Y H E+L + V+T+ GK LD+GCG G S+F + G
Sbjct: 7 DYFHKKYNTTPTHSEVL-EAVKTVK------------PGK-ALDLGCGQGRNSLFLSLLG 52
Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150
Y VD N S + L+ E+ L DI
Sbjct: 53 --------------YDVTAVDHNENS--IANLQDIKEKENLDIPTALYDI 86
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 30.0 bits (68), Expect = 1.9
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 27/98 (27%)
Query: 56 MLKDEVRTMTYRNSMYHN-KHLFKGKIVLDIGCGTGILSMFAA-KSGAARVIGIECSNIV 113
M K+EVR + H KHL +D+G GTG +S+ AA + + +V IE
Sbjct: 14 MTKEEVRALALSKLELHRAKHL------IDVGAGTGSVSIEAALQFPSLQVTAIE----- 62
Query: 114 EYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
+N D + ++K + FG +DII
Sbjct: 63 --------RNP--DALRLIKENRQR----FGCGNIDII 86
>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase. This model
describes a set of proteins with homology in its central
region to a large number of methyltransferases active on
a variety of substrates. The similarity includes a motif
resembling ILDVGCG[SG]G. Known examples to date are
restricted to the proteobacteria [Unknown function,
Enzymes of unknown specificity].
Length = 314
Score = 30.3 bits (68), Expect = 2.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 74 KHL--FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDK 122
HL KG+ +LD+GCG+G GA ++GI+ + + E V K
Sbjct: 115 PHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRK 165
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 30.0 bits (68), Expect = 2.6
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 78 KGKIVLDIGCGTGI--LSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
K +L+IG G L M A R+ IE E A+E + + + D + +L
Sbjct: 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELL 116
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 29.8 bits (68), Expect = 2.6
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 78 KGKIVLDIGCGTG----ILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTIL 132
G VL+IG G+G +L+ RV +E + AK + + L +V
Sbjct: 78 PGDRVLEIGTGSGYQAAVLAHL-----VRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRH 132
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 29.4 bits (67), Expect = 2.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIE 108
VL+IG G G L+ + A RV IE
Sbjct: 17 VLEIGPGKGALTEELLER-AKRVTAIE 42
>gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like,
classical (c) SDRs. Ga5DH catalyzes the NADP-dependent
conversion of carbon source D-gluconate and
5-keto-D-gluconate. This SDR subgroup has a classical
Gly-rich NAD(P)-binding motif and a conserved active
site tetrad pattern. However, it has been proposed that
Arg104 (Streptococcus suis Ga5DH numbering), as well as
an active site Ca2+, play a critical role in catalysis.
In addition to Ga5DHs this subgroup contains Erwinia
chrysanthemi KduD which is involved in pectin
degradation, and is a putative
2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107,15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 248
Score = 29.6 bits (67), Expect = 3.2
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 78 KGKIVLDIGCGTGILSMFA---AKSGAARVIGIECSNIVEYAKEIVDKN---------NL 125
KGK+ L G GI A A++GA VI E A+++++K ++
Sbjct: 4 KGKVALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKEGVEATAFTCDV 63
Query: 126 SDVVTILKGKVEEVELPFGIQKVDIII 152
SD I VE +E FG K+DI++
Sbjct: 64 SDEEAIKAA-VEAIEEDFG--KIDILV 87
>gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase
GidB. GidB (glucose-inhibited division protein B)
appears to be present and in a single copy in nearly all
complete eubacterial genomes. It is missing only from
some obligate intracellular species of various lineages
(Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera,
etc.). GidB shows a methytransferase fold in its the
crystal structure, and acts as a 7-methylguanosine
(m(7)G) methyltransferase, apparently specific to 16S
rRNA [Protein synthesis, tRNA and rRNA base
modification].
Length = 181
Score = 29.5 bits (67), Expect = 3.2
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECSNI--VEYAKEIVDKNNLSDVVTIL 132
GK V+DIG G G + A + ++ +E SN V + +E+ + L++ V I+
Sbjct: 40 YLDGKRVIDIGSGAGFPGIPLAIARPELKLTLLE-SNHKKVAFLREVKAELGLNN-VEIV 97
Query: 133 KGKVEEVELPFGIQKVDIIIS 153
G+ E+ + + DII S
Sbjct: 98 NGRAEDFQHEE---QFDIITS 115
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 30.0 bits (68), Expect = 3.3
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 391 QVDDRLAALGLRDRDCMYTKL-YTIVHAPFT-----LQVRRNDYVQALVTFFSV 438
QV AAL D L T++ AP L VR YV A ++
Sbjct: 191 QVASAEAALDQAKLD-----LERTVIRAPVDGYVTNLSVRVGQYVSAGTPLMAL 239
>gnl|CDD|235753 PRK06252, PRK06252, methylcobalamin:coenzyme M methyltransferase;
Validated.
Length = 339
Score = 29.8 bits (68), Expect = 3.4
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 71 YHNK---HLFKGKIVLDIGCG--TGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN-- 123
Y NK + +L I CG T IL A G I I+ V+ AKE V
Sbjct: 221 YLNKIIDEVKGLPTILHI-CGDLTSILEEMA-DCGF-DGISIDEKVDVKTAKENVGDRAA 277
Query: 124 ---NLSDVVTILKGKVEEVE 140
N+S T+L G E+V+
Sbjct: 278 LIGNVSTSFTLLNGTPEKVK 297
>gnl|CDD|225927 COG3392, COG3392, Adenine-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 330
Score = 29.8 bits (67), Expect = 3.8
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTI-- 131
K GKI DI GTG++ F K+G ++I +N +EY ++++N + ++ I
Sbjct: 23 KEDLSGKIFCDIFAGTGVVGRFFKKAG-NKII----ANDLEYYSYLLNQNYIGNIQEIPN 77
Query: 132 ---LKGKVEEVELPFG 144
L K+ V L G
Sbjct: 78 QIELLNKINNVALKKG 93
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 29.6 bits (67), Expect = 4.2
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 81 IVLDIGCGT--GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE 138
+V GT G+L A VIGI+ S E KE V+ + + E
Sbjct: 185 VVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKE--------QVLNLAQATAEL 236
Query: 139 VEL 141
+ L
Sbjct: 237 LGL 239
>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA
replication, recombination, and repair].
Length = 347
Score = 29.7 bits (67), Expect = 4.4
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
+G++VLD CGTG + + A G ARVIG + +V AK ++ + D +
Sbjct: 197 RGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA 255
Query: 137 EEVELP 142
+ L
Sbjct: 256 TNLPLR 261
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 29.0 bits (65), Expect = 4.7
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 76 LFK-GKIVLDIGCGTGILSMFAAKSGA--ARVIGIECSNIVEYAKEIVDKNNLSDVVTIL 132
L K G VLD+G G S A + RVI ++ + + + +D L
Sbjct: 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEV-L 87
Query: 133 KGKVEEVELPFGIQKVDIIISE 154
E V G KVD+++S+
Sbjct: 88 NKIRERV----GDDKVDVVMSD 105
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 29.3 bits (66), Expect = 4.9
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 45 DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILS-MFAAKSGAAR 103
D Y F +DE RT R+ + ++V D+GCG G + + A + A
Sbjct: 6 DQYLQF-------EDE-RTRPARDLLARVPLERPRRVV-DLGCGPGNSTELLARRWPDAV 56
Query: 104 VIGIECS 110
+ GI+ S
Sbjct: 57 ITGIDSS 63
>gnl|CDD|133956 PHA01740, PHA01740, putative single-stranded DNA-binding protein.
Length = 158
Score = 28.6 bits (63), Expect = 5.4
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 355 GSFGMQPNPRNNRDLDFTVEVNFKGELCEMS--ESNDYQVDDRLAALGLRDRD 405
G+ G P+N++ FT +V+ +G + ++ D+ DD +L L +D
Sbjct: 10 GTLGKNRQPKNDKSPHFTGKVDIRGTVYWLAGWRQEDFMSDDHYISLSLTGKD 62
>gnl|CDD|130341 TIGR01274, ACC_deam, 1-aminocyclopropane-1-carboxylate deaminase.
This pyridoxal phosphate-dependent enzyme degrades
1-aminocyclopropane-1-carboxylate, which in plants is a
precursor of the ripening hormone ethylene, to ammonia
and alpha-ketoglutarate. This model includes all members
of this family for which function has been demonstrated
experimentally, but excludes a closely related family
often annotated as putative members of this family
[Central intermediary metabolism, Other].
Length = 337
Score = 29.0 bits (65), Expect = 5.7
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 90 GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVD 149
G+++ FAA RVIGI+ S E + ++ I + E++ L I + D
Sbjct: 204 GMVAGFAADGRKDRVIGIDASATPEQTRA--------QILRIARNTAEKIGLERDITEDD 255
Query: 150 IIISEWMGY 158
+++ Y
Sbjct: 256 VVLDTRFAY 264
>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
Length = 131
Score = 28.0 bits (63), Expect = 6.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 88 GTGILSMFAAK-SGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK-VEEVELPFGI 145
G G+ ++ AK GAARVI ++ S E E+ + V+ VE V G
Sbjct: 1 GVGLAAVQLAKALGAARVIAVDRS---EEKLELAKELGADHVINYRDEDFVERVRELTGG 57
Query: 146 QKVDIII 152
+ VD++I
Sbjct: 58 RGVDVVI 64
>gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family. MtaA/CmuA, also
MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M
isozymes, are methylcobamide:Coenzyme M
methyltransferases, which play a role in metabolic
pathways of methane formation from various substrates,
such as methylated amines and methanol. Coenzyme M,
2-mercaptoethylsulfonate or CoM, is methylated during
methanogenesis in a reaction catalyzed by three
proteins. A methyltransferase methylates the corrinoid
cofactor, which is bound to a second polypeptide, a
corrinoid protein. The methylated corrinoid protein then
serves as a substrate for MT2-A and related enzymes,
which methylate CoM.
Length = 326
Score = 29.2 bits (66), Expect = 6.0
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 70 MYHNKHLFK---GKIVLDIGCG--TGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN- 123
YH K + + +L I CG T IL A + G I ++ V+ AKEIV
Sbjct: 211 PYHKKIVKELHGCPTILHI-CGNTTPILEYIA-QCGF-DGISVDEKVDVKTAKEIVGGRA 267
Query: 124 ----NLSDVVTILKGKVEEV 139
N+S T+L G E+V
Sbjct: 268 ALIGNVSPSQTLLNGTPEDV 287
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 28.8 bits (65), Expect = 6.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 78 KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
IVL+IG G G ++ M A K+ +GIE V A + + + L ++ +L G
Sbjct: 48 NAPIVLEIGFGMGEFLVEM-AKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLR-LLCG 105
Query: 135 KVEEV 139
EV
Sbjct: 106 DAVEV 110
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 28.8 bits (65), Expect = 6.9
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 81 IVLDIGCGTGILSMFAAKSGAARVIGIECSN--IVEYAKEIVDKNNLSDVVTILKGKVEE 138
VL+IG GTG L+ A +VI IE + E K + + L+ + +++G +
Sbjct: 39 TVLEIGPGTGNLTE-KLLQLAKKVIAIEIDPRMVAELKKRFQN-SPLASKLEVIEGDALK 96
Query: 139 VELPF 143
E P+
Sbjct: 97 TEFPY 101
>gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine
N1-methyltranferase. Ovothiol A is
N1-methyl-4-mercaptohistidine. In the absence of
S-adenosylmethione, a methyl donor, the intermediate
produced is 4-mercaptohistidine. In both Erwinia
tasmaniensis and Trypanosoma cruzi, a protein occurs
with 5-histidylcysteine sulfoxide synthase activity, but
these two enzymes and most homologs share an additional
C-terminal methyltransferase domain. Thus OvoA may be a
bifunctional enzyme with 5-histidylcysteine sulfoxide
synthase and 4-mercaptohistidine N1-methyltranferase
activity. This model describes C-terminal putative
4-mercaptohistidine N1-methyltranferase domain
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 242
Score = 28.7 bits (65), Expect = 6.9
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS 110
K LDIGC G S F V GI+ S
Sbjct: 40 KSRKRALDIGCAVGRAS-FELARYFDEVDGIDFS 72
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 28.3 bits (63), Expect = 9.7
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVV 129
L KG VL+IG GTG ++S + G V+ +E S I E AK V + + +V+
Sbjct: 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGL--VVSVEYSRKICEIAKRNVRRLGIENVI 134
Query: 130 TI 131
+
Sbjct: 135 FV 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,480,044
Number of extensions: 2594153
Number of successful extensions: 1912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1901
Number of HSP's successfully gapped: 116
Length of query: 519
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 418
Effective length of database: 6,457,848
Effective search space: 2699380464
Effective search space used: 2699380464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)