RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14674
(519 letters)
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 410 bits (1056), Expect = e-141
Identities = 240/377 (63%), Positives = 299/377 (79%), Gaps = 34/377 (9%)
Query: 16 SNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKH 75
+ Q S+ N EDMTS+DYYFDSYAHFGIHEE+LKDEVRT+TYRNSM+HN+H
Sbjct: 6 HHHMSCGQAESSEKPNA--EDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRH 63
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK 135
LFK K+VLD+G GTGIL MFAAK+GA +VIGIECS+I +YA +IV N L VVTI+KGK
Sbjct: 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGK 123
Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195
VEEVELP ++KVDIIISEWMGYCLFYESML+TVL+ARDKWLA +GL
Sbjct: 124 VEEVELP--VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGL------------- 168
Query: 196 EDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIK 255
+FPD+A+L++ IEDRQYK+ KI WW+NVYGFDMSCIK +AIK
Sbjct: 169 -----------------IFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKDVAIK 211
Query: 256 EPLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFS 315
EPLVDVVDPKQ+VT++CL+KE+D+YT+ DL+FTSPF LQV+RNDYV ALV +F++EF+
Sbjct: 212 EPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFT 271
Query: 316 KCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEV 375
+CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK GEE+ G+ GM+PN +NNRDLDFT+++
Sbjct: 272 RCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDL 331
Query: 376 NFKGELCEMSESNDYQV 392
+FKG+LCE+S S DY++
Sbjct: 332 DFKGQLCELSCSTDYRM 348
Score = 132 bits (334), Expect = 8e-35
Identities = 69/104 (66%), Positives = 91/104 (87%)
Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
+PF LQV+RNDYV ALV +F++EF++CHKR GFST+PE+ YTHWKQTVFY+ ++LTVK
Sbjct: 246 TSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKT 305
Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYRMR 519
GEE+ G+ GM+PN +NNRDLDFT++++FKG+LCE+S S DYRMR
Sbjct: 306 GEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 388 bits (998), Expect = e-133
Identities = 165/349 (47%), Positives = 221/349 (63%), Gaps = 34/349 (9%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
DYYFDSY H+GIHEEML+D VRT++YRN++ NK LFK KIVLD+GCGTGILSMFAAK G
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL 160
A VIG++ S+I+E AKE+V+ N SD +T+L+GK+E+V LP KVDIIISEWMGY L
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLP--FPKVDIIISEWMGYFL 118
Query: 161 FYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASL 220
YESM+DTVLYARD +L G ++FPDK S+
Sbjct: 119 LYESMMDTVLYARDHYLVEGG------------------------------LIFPDKCSI 148
Query: 221 FICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDLY 280
+ G+ED QYK++K+ +W +VYGFD S + + EP+VD V+ V T+S L E DL
Sbjct: 149 HLAGLEDSQYKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLN 208
Query: 281 TITKADLSFTSPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTV 338
T+ +DL+F S F L +R D + +VT+F + F K + + FST P A YTHWKQT+
Sbjct: 209 TVKISDLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTI 268
Query: 339 FYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES 387
FY + L + G+ + G PN +NNRDL+ + F+ + +
Sbjct: 269 FYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSR 317
Score = 113 bits (285), Expect = 3e-28
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 416 HAPFTLQVRRNDYVQALVTFFSVEF--SKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTV 473
+ F L +R D + +VT+F + F K + + FST P A YTHWKQT+FY + L
Sbjct: 218 KSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDA 277
Query: 474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFK-----GELCEMSESNDYRM 518
+ G+ + G PN +NNRDL+ + F+ G Y M
Sbjct: 278 ETGDTIEGELVCSPNEKNNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 382 bits (983), Expect = e-131
Identities = 154/369 (41%), Positives = 226/369 (61%), Gaps = 36/369 (9%)
Query: 20 PSQQNGD-SKDENVQCEDMTSRD--YYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL 76
S + S + D+ + YF SY H+GIHEEMLKD++RT +YR+ +Y N H+
Sbjct: 3 SSHHHHHHSSGLVPRGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHI 62
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKV 136
FK K+VLD+GCGTGILSMFAAK+GA +V+G++ S I+ A +I+ N L D +T++KGK+
Sbjct: 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI 122
Query: 137 EEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIE 196
EEV LP ++KVD+IISEWMGY L +ESMLD+VLYA++K+LA G
Sbjct: 123 EEVHLP--VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGS-------------- 166
Query: 197 DLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKE 256
++PD ++ + + D D+I +WD+VYGF MSC+KK I E
Sbjct: 167 ----------------VYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPE 210
Query: 257 PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSK 316
+V+V+DPK +++ C +K ID +T + +DL F+S FTL++ R A+ +F + F K
Sbjct: 211 AVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTAIAGYFDIYFEK 270
Query: 317 -CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEV 375
CH R+ FST P++ THWKQTVF L + +VK GE + G + N ++ R L T+ +
Sbjct: 271 NCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTL 330
Query: 376 NFKGELCEM 384
N + +
Sbjct: 331 NNSTQTYGL 339
Score = 102 bits (255), Expect = 4e-24
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 415 VHAPFTLQVRRNDYVQALVTFFSVEFSK-CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTV 473
+ FTL++ R A+ +F + F K CH R+ FST P++ THWKQTVF L + +V
Sbjct: 243 FSSDFTLKITRTSMCTAIAGYFDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSV 302
Query: 474 KKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEM 510
K GE + G + N ++ R L T+ +N + +
Sbjct: 303 KAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQTYGL 339
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 365 bits (938), Expect = e-124
Identities = 108/353 (30%), Positives = 171/353 (48%), Gaps = 39/353 (11%)
Query: 35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
+ +S YF Y + + M++D VRT TY+ ++ N FK KIVLD+GCG+GILS
Sbjct: 7 TEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSF 66
Query: 95 FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
FAA++GA ++ +E S + ++A+ +V NNL+D + ++ GKVEEV LP ++VDIIISE
Sbjct: 67 FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP---EQVDIIISE 123
Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLF 214
MGY LF E ML++ L+A+ K+L +G +FP + + D Q +
Sbjct: 124 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFT-------- 174
Query: 215 PDKASLFICGIEDRQYKEDKITWW--DNVYGFDMSCIKKIAIKE----PLVDVVDPKQVV 268
K +W + +G D+S ++ A+ E P+VD D + ++
Sbjct: 175 -------------------KANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILM 215
Query: 269 TSSCLLKEIDLYTITKAD-LSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAP 327
S ++ + D PF + + V L +F V F + STAP
Sbjct: 216 AKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAP 274
Query: 328 EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGE 380
THW Q L K G+ + G+ + N R + D+ +V+ G
Sbjct: 275 TEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGS 327
Score = 116 bits (292), Expect = 5e-29
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 3/106 (2%)
Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
PF + + V L +F V F + STAP THW Q L K
Sbjct: 237 EIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKA 296
Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES---NDYRM 518
G+ + G+ + N R + D+ +V+ G +R
Sbjct: 297 GDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 365 bits (939), Expect = e-122
Identities = 109/369 (29%), Positives = 176/369 (47%), Gaps = 39/369 (10%)
Query: 19 KPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFK 78
K + + + + + +S YF Y + + M++D VRT TY+ ++ N FK
Sbjct: 99 KTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK 158
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEE 138
KIVLD+GCG+GILS FAA++GA ++ +E S + ++A+ +V NNL+D + ++ GKVEE
Sbjct: 159 DKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE 218
Query: 139 VELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDL 198
V LP ++VDIIISE MGY LF E ML++ L+A+ K+L +G +FP + + D
Sbjct: 219 VSLP---EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDE 274
Query: 199 QGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWW--DNVYGFDMSCIKKIAIKE 256
Q + K +W + +G D+S ++ A+ E
Sbjct: 275 QLYMEQFT---------------------------KANFWYQPSFHGVDLSALRGAAVDE 307
Query: 257 ----PLVDVVDPKQVVTSSCLLKEIDLYTITKAD-LSFTSPFTLQVRRNDYVQALVTFFS 311
P+VD D + ++ S ++ + D PF + + V L +F
Sbjct: 308 YFRQPVVDTFDIRILMAKSV-KYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFD 366
Query: 312 VEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDF 371
V F + STAP THW Q L K G+ + G+ + N R + D+
Sbjct: 367 VAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISI 426
Query: 372 TVEVNFKGE 380
+V+ G
Sbjct: 427 VAQVDQTGS 435
Score = 116 bits (291), Expect = 4e-28
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 416 HAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKK 475
PF + + V L +F V F + STAP THW Q L K
Sbjct: 345 EIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKA 404
Query: 476 GEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMS---ESNDYRM 518
G+ + G+ + N R + D+ +V+ G ++ +R
Sbjct: 405 GDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 450
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 344 bits (883), Expect = e-115
Identities = 105/388 (27%), Positives = 188/388 (48%), Gaps = 36/388 (9%)
Query: 16 SNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKH 75
SN+ + + YF +Y+ ++ML D VR Y N+++ NKH
Sbjct: 1 SNAGGRAAGTGGGGPSAPVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKH 60
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGK 135
F+GK VLD+G G+GIL++++A++GA +V +E + + ++A+ +V NNL +V +++G
Sbjct: 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGS 120
Query: 136 VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGI 195
VE++ LP +KVD+IISEWMGY L ESM D+V+ ARD+WL G+++P A +++ I
Sbjct: 121 VEDISLP---EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPI 177
Query: 196 EDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIK 255
+ + + + YG DM + K +
Sbjct: 178 KSNIADRKRNDFD-----------------GAMADWHNFSDEIKSYYGVDMGVLTKPFAE 220
Query: 256 E--------PLVDVVDPKQVVTSSCLLKEIDLYTITKADLSFTSPFTLQV--RRNDYVQA 305
E + + ++P+Q++ + ++KE+D T + +++ V + +
Sbjct: 221 EQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCG 280
Query: 306 LVTFFSVEFS-----KCHKRIGFSTAP-EAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGM 359
+F V+FS + I +TAP E H THW Q VF ++ + V++G+ + M
Sbjct: 281 FGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLM 340
Query: 360 QPNPRNNRDLDFTVEVNFKGELCEMSES 387
+ N+R ++ + K ES
Sbjct: 341 SRSKENHRLMEIELNCEIKEASGNPKES 368
Score = 103 bits (257), Expect = 3e-24
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 415 VHAPFTLQV-RRNDYVQALVTFFSVEFS-----KCHKRIGFSTAP-EAHYTHWKQTVFYL 467
V + T + + + +F V+FS + I +TAP E H THW Q VF +
Sbjct: 263 VRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIM 322
Query: 468 NEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSES--NDYRM 518
+ + V++G+ + M + N+R ++ + K ES Y +
Sbjct: 323 SNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFI 375
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 183 bits (464), Expect = 2e-50
Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 47/343 (13%)
Query: 52 IHEEMLKDEVRTMTYRNSMYH-----NKHLFKGKIVLDIGCGTGILSMFAAKSGA----- 101
++ +D+++ Y ++ K ++ +G G G + KS
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNT 437
Query: 102 ---------ARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELP---FGIQKVD 149
++ +E + + ++ VTI++ + + G ++ D
Sbjct: 438 FRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPD 497
Query: 150 IIISEWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQC 209
II+SE +G E + L +L + P K + ++ I
Sbjct: 498 IIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTH---------- 546
Query: 210 VRVLFPDKASLFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPL-----VDVVDP 264
+ + I + + + + + ++ + V +
Sbjct: 547 ---IHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKY 603
Query: 265 KQVVTSSCLLKEIDLYTITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFS 324
+ ++ + + + + + RN + +F ++ +K + S
Sbjct: 604 IPLAETTKPVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQL---YKTVMLS 660
Query: 325 TAPEAHYTH---WKQTVFYLNEHLTVKKGEEVVGSFGMQPNPR 364
P H W V L + L V +G+ + + +
Sbjct: 661 IEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDNT 703
Score = 60.8 bits (146), Expect = 6e-10
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 408 YTKLYTIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTH---WKQTV 464
+ + RN + +F ++ +K + S P H W V
Sbjct: 621 FMNSSNERSDSIEFVMDRNADLMGFAGYFDLQL---YKTVMLSIEPSTHTPGMVSWFPAV 677
Query: 465 FYLNEHLTVKKGEEVVGSFGMQPNPR 490
L + L V +G+ + + +
Sbjct: 678 IPLRDQLRVGEGDRISLKIDRKVDNT 703
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 130 bits (329), Expect = 9e-35
Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
E+ T D+ + F + E +T + ++ +L + ++ DIGCGTG +M
Sbjct: 4 ENKTIHDFELNLICDFFSNMERQGPGSPEVTLK-ALSFIDNLTEKSLIADIGCGTGGQTM 62
Query: 95 FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
A +V G++ ++ ++ L + VT + G ++ +LPF +++D+I S
Sbjct: 63 VLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD--DLPFRNEELDLIWS 120
Query: 154 EWMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLF 191
E Y + +E L+ K+L G L + S F
Sbjct: 121 EGAIYNIGFERGLN----EWRKYLKKGGYLAVSECSWF 154
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 104 bits (260), Expect = 2e-25
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 19/167 (11%)
Query: 37 MTSRDY----YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
+ Y +F+ Y+ +E LK + + F K VLD+GCG G
Sbjct: 3 LKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKML----PDFNQKTVLDLGCGFGWH 58
Query: 93 SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
++AA+ GA +V+GI+ S ++ AK S VV + +E ++ +++
Sbjct: 59 CIYAAEHGAKKVLGIDLSERMLTEAKR----KTTSPVVCYEQKAIE--DIAIEPDAYNVV 112
Query: 152 ISEWMGYCLFYESMLDTVLYARDKWLATNG-LLFPDKASLFICGIED 197
+S L Y + D + L ++G +F + +F
Sbjct: 113 LSSLA---LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 84.5 bits (209), Expect = 1e-18
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 8/150 (5%)
Query: 35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
+ + D+ F ++ + T R ++ L + DIGCGTG ++
Sbjct: 4 NNTSIHDFDFSFICNYFKLLKRQGPGSPEAT-RKAVSFINELTDDAKIADIGCGTGGQTL 62
Query: 95 FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
F A ++ GI+ + +E E K N +D V + G ++ LPF +++D+I S
Sbjct: 63 FLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD--NLPFQNEELDLIWS 120
Query: 154 EWMGYCLFYESMLDTVLYARDKWLATNGLL 183
E Y + +E ++ K+L G +
Sbjct: 121 EGAIYNIGFERGMNEWS----KYLKKGGFI 146
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 73.0 bits (179), Expect = 8e-15
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+ +G I+LD+G L + + G I E + A + V+ + L + + +
Sbjct: 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL 160
+V +I MG L
Sbjct: 71 RLANGLAAFEETD--QVSVITIAGMGGRL 97
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 70.7 bits (174), Expect = 3e-14
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI---ECSNIVEYAKEIVDKNNLSDVVT 130
+ + K V D+G G+GIL++ A K GA V+ + S + A+E N + D+
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDES--MTAAEENAALNGIYDIAL 113
Query: 131 ILKGKVEEVELPFGIQKVDIII 152
+ +V+ F D+I+
Sbjct: 114 QKTSLLADVDGKF-----DLIV 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 5e-13
Identities = 73/535 (13%), Positives = 149/535 (27%), Gaps = 168/535 (31%)
Query: 26 DSKDENVQ--CEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTY---RNSMYHNKHLFK-- 78
++E VQ E++ +Y F I E + + T Y R+ +Y++ +F
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSP---IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 79 ---------------------GKIVLD--IGCGTGILSMFAAKSGAARVIGIECSNIVEY 115
+++D +G G + A ++C
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALD--VCLSYKVQC------ 178
Query: 116 AKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM--GYCLFYESMLDTV--LY 171
++ F I W+ C E++L+ + L
Sbjct: 179 ------------------------KMDFKIF--------WLNLKNCNSPETVLEMLQKLL 206
Query: 172 ARDKWLATNGLLFPDKASLFICGIEDLQGGQDHVVGQCVRVLFPDKASLFICGIEDRQYK 231
+ + N D +S I +Q +R L + + Y+
Sbjct: 207 YQ---IDPNWTSRSDHSSNIKLRIHSIQAE--------LRRLL-----------KSKPYE 244
Query: 232 E-----DKITWWDN--VYGFDMSCIKKIAI---KEPLVDVVDPKQVVTSSCLLKEIDLYT 281
+ + F++SC KI + + + D + I +
Sbjct: 245 NCLLVLLNV--QNAKAWNAFNLSC--KILLTTRFKQVTDFLSAATT-------THI---S 290
Query: 282 ITKADLSFTSPFTLQVRRNDYVQALVTFFSVEFSKCHKR----IGFSTAPE-AHYTHWKQ 336
+ ++ T + Y+ E + R I S A + +WK
Sbjct: 291 LDHHSMTLTPDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK- 348
Query: 337 TVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDL--DFTV---EVNFKGEL-----CEMSE 386
H+ K ++ S P R + +V + L ++ +
Sbjct: 349 -------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 387 SNDYQVDDRLAALGLRDRD-CMYTKLYTIVHAPFTLQVRRNDYVQ---ALVTFFSVEFSK 442
S+ V ++L L ++ T +I L+V+ + ++V K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKEST--ISIPSIYLELKVKLENEYALHRSIVD--HYNIPK 457
Query: 443 CHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDF 497
Y + ++ HL + E + F D F
Sbjct: 458 TFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLF-----RMVFLDFRF 502
Score = 30.2 bits (67), Expect = 1.9
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 52/183 (28%)
Query: 330 HYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESND 389
H+ H H+ + GE Q +D+ E F + + D
Sbjct: 1 HHHH---------HHMDFETGE-------HQ---YQYKDILSVFEDAFVDNF-DCKDVQD 40
Query: 390 Y--------QVDDRLAALGLRDR--------DCMYTKLYTIVHAPFTLQVRRNDYVQALV 433
++D + +D + +K +V F +V R +Y + L+
Sbjct: 41 MPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINY-KFLM 95
Query: 434 TFFSVE----------FSKCHKRIGFSTAPEAHYTHW-KQTVFYLNEHLTVKKGEEVVGS 482
+ E + + R+ A Y Q L + L + + V
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 483 FGM 485
G+
Sbjct: 156 DGV 158
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 66.7 bits (163), Expect = 1e-12
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 16/128 (12%)
Query: 29 DENVQCEDMTSRDYY--FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIG 86
EN + D I+ + ++ + +DIG
Sbjct: 3 SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFG-----------ITAGTCIDIG 51
Query: 87 CGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145
G G LS+ AK + ++ S ++ E A + + NL+D + I++G V +P
Sbjct: 52 SGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH--NIPIED 109
Query: 146 QKVDIIIS 153
D+I+S
Sbjct: 110 NYADLIVS 117
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 65.3 bits (159), Expect = 4e-12
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
++ K + + DIG L FA K+ A+ I E + A++ V + L++ + +
Sbjct: 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76
Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL 160
KG V +D I+ MG L
Sbjct: 77 RKGNGLAVIEKK--DAIDTIVIAGMGGTL 103
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 65.9 bits (160), Expect = 4e-12
Identities = 21/144 (14%), Positives = 52/144 (36%), Gaps = 8/144 (5%)
Query: 46 SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA--AR 103
+ +L R +R ++ +HL G +V + CG + S +
Sbjct: 88 ERVFYERLPAVLATRERHGHFRRAL--QRHLRPGCVVASVPCGWMSELLALDYSACPGVQ 145
Query: 104 VIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY 162
++GI+ ++ A + + L+ +T+ + +L + D++ S +
Sbjct: 146 LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW--KLDTR-EGYDLLTSNGLNIYEPD 202
Query: 163 ESMLDTVLYARDKWLATNGLLFPD 186
++ + + + L G L
Sbjct: 203 DARVTELYRRFWQALKPGGALVTS 226
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 65.0 bits (157), Expect = 8e-12
Identities = 22/159 (13%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 38 TSRDYYFDSY-AHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM-F 95
R + + +Y ++G +D R + F+G+ VLD+GC G L++
Sbjct: 12 QQRKFQYGNYCKYYGYRNPSCEDG------RLRVL-KPEWFRGRDVLDLGCNVGHLTLSI 64
Query: 96 AAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
A K G +R++G++ + ++ A++ + ++ + + ++ + +
Sbjct: 65 ACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAE--GEEGTTTVRK 122
Query: 155 WMGYCLFYESMLDTVLYARDKWLATNGLLFPDKASLFIC 193
+ + + + + +FP+
Sbjct: 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTG 161
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 64.2 bits (156), Expect = 1e-11
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 44 FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-A 102
Y H E L+ + T ++H+ G VL+ GCG G ++ AK+ A
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA 62
Query: 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWM 156
+ I+ S +E A+E +KN + + V L+ + LPF D I ++
Sbjct: 63 EITSIDISPESLEKARENTEKNGIKN-VKFLQANIF--SLPFEDSSFDHIFVCFV 114
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 63.4 bits (154), Expect = 1e-11
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
++ KG +LD+G L +F + G I E + A + V ++ L+ + +
Sbjct: 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76
Query: 132 LKGKVEEVELPFGIQKVDIIISEWMGYCL 160
+D I MG L
Sbjct: 77 RLANGLSAFEEA--DNIDTITICGMGGRL 103
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 63.0 bits (153), Expect = 2e-11
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 35 EDMTSRDY------YFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIG 86
E MT ++ +DS A F +EM R+ + +++ K VLD+G
Sbjct: 5 ECMTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIP---FFEQYVKKEAEVLDVG 61
Query: 87 CGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGI 145
CG G + +++G + +G++ S +++ KE ++ +KG + LPF
Sbjct: 62 CGDGYGTYKLSRTG-YKAVGVDISEVMIQKGKE----RGEGPDLSFIKGDLS--SLPFEN 114
Query: 146 QKVDIIIS 153
++ + I++
Sbjct: 115 EQFEAIMA 122
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 61.9 bits (151), Expect = 6e-11
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI---ECSNIVEYAKEIVDKNNLSDVVT 130
+HL G VLD+G G+G+L++ A K G + +G+ + A+ +N +
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMV--LPQAEANAKRNGVRP--- 169
Query: 131 ILKGKVEEVELP--FGIQKVDIII 152
+ E L D+++
Sbjct: 170 ----RFLEGSLEAALPFGPFDLLV 189
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 61.8 bits (150), Expect = 6e-11
Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 30/156 (19%)
Query: 38 TSRDY--YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMF 95
SR+Y A D + R F+ +L++G G +
Sbjct: 4 ISRNYDQEIKDTAGHKYAYNFDFDVMHPFMVR----AFTPFFRPGNLLELGSFKGDFTSR 59
Query: 96 AAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISE 154
+ + +E + +A+ + +T + + E+ +LP ++ D I+
Sbjct: 60 LQEHF-NDITCVEASEEAISHAQGRLKDG-----ITYIHSRFEDAQLP---RRYDNIV-- 108
Query: 155 WMGYCLFYESM------LDTVLYARDKWLATNGLLF 184
+ + + D WLA G LF
Sbjct: 109 ------LTHVLEHIDDPVALLKRINDDWLAEGGRLF 138
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 61.7 bits (150), Expect = 9e-11
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 5/113 (4%)
Query: 46 SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVI 105
Y + + D +T M + G VLD+GCG G ++ A + RV
Sbjct: 31 GYWEDAGADVSVDDATDRLTDE--MIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVT 88
Query: 106 GIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
GI S V A L++ VT +LPF D + +
Sbjct: 89 GISISRPQVNQANARATAAGLANRVTFSYADAM--DLPFEDASFDAVWALESL 139
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 59.8 bits (145), Expect = 2e-10
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 25/105 (23%)
Query: 65 TYRNSMYHNKHLF---------------KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC 109
+ +NS+Y K + K VLDIGC +G L ++G RV GIE
Sbjct: 4 SPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENG-TRVSGIEA 62
Query: 110 S-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
E AKE +D L D +E +++P+ ++ D +I
Sbjct: 63 FPEAAEQAKEKLDHVVLGD--------IETMDMPYEEEQFDCVIF 99
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 59.5 bits (144), Expect = 3e-10
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 37 MTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFA 96
M ++YY + I+ + + + T+ K++ K VLD+ CG G S
Sbjct: 1 MGFKEYYRVFPTYTDINSQEYRSRIETLE----PLLMKYMKKRGKVLDLACGVGGFSFLL 56
Query: 97 AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
G V+G++ S +++ A+E + V + G +L F + D +I
Sbjct: 57 EDYG-FEVVGVDISEDMIRKAREYAKSRESN--VEFIVGDAR--KLSFEDKTFDYVIF 109
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 59.8 bits (145), Expect = 3e-10
Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
+ ++D+ G GI+ + + A+++G+E + + AK V N L D + I++ +
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL 108
Query: 137 EEVELPFGIQKVDIIIS 153
+++ ++ DI+
Sbjct: 109 KKITDLIPKERADIVTC 125
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 59.8 bits (145), Expect = 3e-10
Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 37 MTSRDY----YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
M Y +F Y+ G E L ++ G ++D+GCG G
Sbjct: 2 MAQNIYDQPDFFAGYSQLGRSIEGLDGAAE----WPALRAMLPEVGGLRIVDLGCGFGWF 57
Query: 93 SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
+A + GA+ V+G++ S ++ A+ +T + ++ +L D+
Sbjct: 58 CRWAHEHGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLD--KLHLPQDSFDLA 111
Query: 152 IS 153
S
Sbjct: 112 YS 113
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 59.9 bits (145), Expect = 5e-10
Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAA 102
+ E + + L + LD+G G G + F +
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASE--LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV 106
Query: 103 RVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+ + + + +E ++ L+D +T+ G E+P D I S
Sbjct: 107 SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL--EIPCEDNSYDFIWS 156
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 58.0 bits (140), Expect = 9e-10
Identities = 28/163 (17%), Positives = 62/163 (38%), Gaps = 27/163 (16%)
Query: 35 EDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
D+ + DYYF F E++K +R + + + VLDIGCG G
Sbjct: 6 TDIHTSDYYFLFEEKFRGSRELVKARLRR--------YIPYFKGCRRVLDIGCGRGEFLE 57
Query: 95 FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+ G IG++ + +++++ + + ++K E + +D ++
Sbjct: 58 LCKEEG-IESIGVDINEDMIKFCEGKFN---------VVKSDAIEYLKSLPDKYLDGVM- 106
Query: 154 EWMGYCL--FYESMLDTVLYARDKWLATNGLLF---PDKASLF 191
+ + + L +L + + + P+ SL+
Sbjct: 107 --ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLY 147
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 57.6 bits (139), Expect = 9e-10
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 72 HNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVT 130
+ K VLD G G + + + GIE S ++ A+ +NN +
Sbjct: 17 YCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK--LN 74
Query: 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCLFYE 163
I KG + +LPF + + + S + +
Sbjct: 75 ISKGDIR--KLPFKDESMSFVYSYGTIFHMRKN 105
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 55.8 bits (135), Expect = 3e-09
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 45 DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARV 104
D + EVR + K + +D+GCGTG +++ A RV
Sbjct: 5 DEFIKNPSVPGPTAMEVRCLIM-----CLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRV 58
Query: 105 IGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
I+ + + + + ++ L D VT+++G E L I +DI +
Sbjct: 59 YAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA-LC-KIPDIDIAV 105
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 54.3 bits (130), Expect = 1e-08
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSD-V 128
+N G+ V+D G G GIL+ + GA V + + +E AK N
Sbjct: 44 IYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD 103
Query: 129 VTILKGKVEEV--ELPFGIQKVDII 151
V+ + GK + PFG
Sbjct: 104 VSEISGKYDTWIMNPPFGSVVKHSD 128
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 55.7 bits (134), Expect = 1e-08
Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 27/120 (22%)
Query: 40 RDYYF-DSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
RD Y+ D Y F ++ + K ++D GCG G L +
Sbjct: 1 RDLYYNDDYVSFLVNTVW------------------KITKPVHIVDYGCGYGYLGLVLMP 42
Query: 99 --SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155
++ GI+ ++ A+E+ L+G E+ K DI I
Sbjct: 43 LLPEGSKYTGIDSGETLLAEARELFRLLPYD--SEFLEGDAT--EIELN-DKYDIAICHA 97
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 55.2 bits (133), Expect = 1e-08
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 15/149 (10%)
Query: 37 MTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFA 96
M + S + IH +++ T+ + G +LD+G G+G +
Sbjct: 1 MDIPRIFTISESEHRIHNPFTEEKYATLGRVL------RMKPGTRILDLGSGSGEMLCTW 54
Query: 97 AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEW 155
A+ GI+ S AK ++ +S+ V + +K D+
Sbjct: 55 ARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---EKCDVAACVG 111
Query: 156 MGYCL-FYESMLDTVLYARDKWLATNGLL 183
+ + + + + L G++
Sbjct: 112 ATWIAGGFAGAEELL----AQSLKPGGIM 136
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 54.8 bits (132), Expect = 1e-08
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
L + VLDIG G G M+ + A GI+ NIV A E + + ++ +
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANE---RVSGNNKIIFEAN 109
Query: 135 KVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD--KWLATNGLL 183
+ F D+I S + S+ + + KWL G L
Sbjct: 110 DIL--TKEFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTL 155
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 53.7 bits (129), Expect = 2e-08
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 14/114 (12%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
+ D+ H E R ++ + + VLD+GCG G L A G
Sbjct: 22 QAWIDAVRHGA-------IESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG 74
Query: 101 AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+G++ +V+ A+ +V ++ E ++P G + D+I +
Sbjct: 75 -IEAVGVDGDRTLVDAARA----AGAGEVHLASYAQLAEAKVPVG-KDYDLICA 122
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 54.1 bits (130), Expect = 3e-08
Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 9/147 (6%)
Query: 43 YFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
+ A + I+ ++ + + ++ + + VLD+ CGTGI ++ A+ G
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG 63
Query: 101 AARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYC 159
V+G++ ++ A+ + NL + L+G V E+ + D + +
Sbjct: 64 -YEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLEIAFK---NEFDAVTMFFSTIM 117
Query: 160 LFYESMLDTVLYARDKWLATNGLLFPD 186
F E L + + L G+ D
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFITD 144
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 52.7 bits (126), Expect = 7e-08
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 13/123 (10%)
Query: 50 FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILS-MFAAKSGA-ARVIGI 107
G + R +R ++ + G+ +L+IGCG G LS + A + G+ V GI
Sbjct: 15 LGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
Query: 108 ECSNI-------VEYAKEIVDKNNLSDVVTILKGKVE-EVELPFGIQKVDIIISEWMGYC 159
+ ++ + A + L D +T+ + P Q D ++ + +
Sbjct: 75 DIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV---LAHS 131
Query: 160 LFY 162
L+Y
Sbjct: 132 LWY 134
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 51.8 bits (124), Expect = 9e-08
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
VL+ G GTG L+ +G V GIE S + AKE L +I +G
Sbjct: 45 SFGNVLEFGVGTGNLTNKLLLAG-RTVYGIEPSREMRMIAKE-----KLPKEFSITEGDF 98
Query: 137 EEVELPFGIQKVDIIIS 153
E+P +D I+S
Sbjct: 99 LSFEVP---TSIDTIVS 112
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 51.6 bits (124), Expect = 1e-07
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAK--SGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTI 131
L +G VLD+G G G + +K +V I+ +V YA E V+K L +V +
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93
Query: 132 LKGKVEEVELPFGIQKVDIIIS 153
+ ++P VD I
Sbjct: 94 K-SEEN--KIPLPDNTVDFIFM 112
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 52.4 bits (125), Expect = 1e-07
Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 17/178 (9%)
Query: 16 SNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHN-- 73
+S P + KD+ ++ + R++Y +S G + +T+ RN +N
Sbjct: 2 DSSSPLKT--FRKDQAMEGKKEEIREHY-NSIRERGRES---RQRSKTINIRN--ANNFI 53
Query: 74 ------KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLS 126
+ +G VLD+GCG G + ++G G++ + + A+
Sbjct: 54 KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113
Query: 127 DVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
V + G + I Y LD + L G
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 51.9 bits (124), Expect = 1e-07
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 42 YYFDSYAHFGIHEEMLKDEVRT---MTYRNSMYHN----KHLFKGKIVLDIGCGTGILSM 94
Y+ Y F ++ +K + +T H FK +V+D CG G ++
Sbjct: 35 YWAQRYRLFSRFDDGIKLDREGWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTI 94
Query: 95 FAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
A +G RVI I+ + + A+ + ++D + + G + K D++
Sbjct: 95 QFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---SFLKADVVF 149
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 51.2 bits (122), Expect = 1e-07
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
+GK+V D+G GTG+LS A GA VI +E V+ E + + + G
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 136 VEEVELPFGIQKVDIIIS 153
V E DI+I
Sbjct: 106 VSEFNSRV-----DIVIM 118
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 51.3 bits (123), Expect = 1e-07
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 30/117 (25%)
Query: 43 YFDSYA-----HFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAA 97
F+ + F +H E++ + K L ++IG GTG ++
Sbjct: 16 IFERFVNEYERWFLVHRFAYLSELQAV---------KCLLPEGRGVEIGVGTGRFAVP-- 64
Query: 98 KSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
IG+E S + E A++ + V +LKG E LP + D +
Sbjct: 65 ---LKIKIGVEPSERMAEIARK---RG-----VFVLKGTAE--NLPLKDESFDFALM 108
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 51.4 bits (123), Expect = 1e-07
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
L+IGC G + A R+ I+ + A + + ++ + +
Sbjct: 55 GLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKR---WSHISWAATDILQFS 110
Query: 141 LPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+ D+I+ + Y L + + T + K LA G L
Sbjct: 111 TA---ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 50.6 bits (121), Expect = 2e-07
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 37 MTSRDYYFDSYAHFGIHEEMLKDEVRTM--TYRNSMYHNKHLFKGKIVLDIGCGTGILSM 94
T ++ ++ AH + + ++ Y + + +G +LD GCG G +
Sbjct: 3 TTWKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGG 62
Query: 95 FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+ +K G V+G + +++YAK+ + + G + D+I+S
Sbjct: 63 YLSKQG-HDVLGTDLDPILIDYAKQDFPE------ARWVVGDLS--VDQISETDFDLIVS 113
Query: 154 EWMGYCLFY--ESMLDTVLYARDKWLATNGLL 183
G + + E + L + L +G
Sbjct: 114 --AGNVMGFLAEDGREPALANIHRALGADGRA 143
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 51.4 bits (123), Expect = 2e-07
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 34/139 (24%)
Query: 43 YFDSYAH----------FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
++D A + ++ ++ + ++L VLD+G GTG
Sbjct: 20 FYDRIARAYDSMYETPKWKLYHRLIGSFLE-----------EYLKNPCRVLDLGGGTGKW 68
Query: 93 SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
S+F + G V+ ++ S ++E A+E K +++ K E +LPF + +
Sbjct: 69 SLFLQERG-FEVVLVDPSKEMLEVARE---KGV----KNVVEAKAE--DLPFPSGAFEAV 118
Query: 152 ISEWMGYCLFYESMLDTVL 170
++ +G L Y D
Sbjct: 119 LA--LGDVLSYVENKDKAF 135
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 51.4 bits (123), Expect = 2e-07
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 19/158 (12%)
Query: 35 EDMTSRDYYFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGIL 92
+ Y A +H+ KD R + +H K +LD+ CGTG+
Sbjct: 6 ATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAA-LVRRHSPKAASLLDVACGTGMH 64
Query: 93 SMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDII 151
A S V G+E S +++ A+ + G + + L ++ +
Sbjct: 65 LRHLADSF-GTVEGLELSADMLAIARRRNPD------AVLHHGDMRDFSLG---RRFSAV 114
Query: 152 ISEWMGYCLFY---ESMLDTVLYARDKWLATNGLLFPD 186
M + + ++ LD L + +G++ +
Sbjct: 115 TC--MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 51.8 bits (124), Expect = 2e-07
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 12/85 (14%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI----VEYAKEIVDKNNLSDVVTI 131
++D GCG G + A + +RV G+ + ++ + + D V
Sbjct: 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV---TLSAAQADFGNRRARELRIDDHVRS 171
Query: 132 LKGKVEEVELPFGIQKVDIIISEWM 156
+ + G V W
Sbjct: 172 RVCNMLDTPFDKG--AVTAS---WN 191
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 49.9 bits (120), Expect = 2e-07
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 12/92 (13%)
Query: 56 MLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIV 113
+ K+E+R ++ K +L K +V+D+GCG+G +++ AK V I+ +
Sbjct: 18 ITKEEIRAVSI------GKLNLNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAI 70
Query: 114 EYAKEIVDKNNLSDVVTILKGKVEEV--ELPF 143
E K+ + K N+ + I+KG+ E+V +L F
Sbjct: 71 EVTKQNLAKFNIKN-CQIIKGRAEDVLDKLEF 101
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 49.7 bits (119), Expect = 3e-07
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
K +++D GCG G + + ++ I+ + ++ KE V+T+
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKE-----KFDSVITL----- 65
Query: 137 EEVELPFGIQKVDIIIS 153
VD I+
Sbjct: 66 -SDPKEIPDNSVDFILF 81
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 50.6 bits (121), Expect = 3e-07
Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 15/105 (14%)
Query: 50 FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIEC 109
H L ++T R VLDIG G G ++ + IG++
Sbjct: 3 HHHHHHSLGLMIKTAECR----------AEHRVLDIGAGAGHTALAFSPYV-QECIGVDA 51
Query: 110 S-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+ +VE A + + +V G E LPF DII
Sbjct: 52 TKEMVEVASSFAQEKGVENVRFQQ-GTAE--SLPFPDDSFDIITC 93
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 50.4 bits (120), Expect = 3e-07
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137
++D CG G + F ++ RVIG++ S + +E A + N+S + +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQFF-PRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQ 115
Query: 138 EVELPFGIQKVDIIIS 153
++ I +I +
Sbjct: 116 AAQIHSEIGDANIYMR 131
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 50.5 bits (121), Expect = 3e-07
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 12/117 (10%)
Query: 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVV 129
++ LD+ CGTG L+ ++ S ++ A+ L
Sbjct: 30 KCVENNLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLK--P 86
Query: 130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFY---ESMLDTVLYARDKWLATNGLL 183
+ + + + +K D+I Y L A L G+
Sbjct: 87 RLACQDISNLNIN---RKFDLITC--CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVF 138
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 50.5 bits (121), Expect = 4e-07
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 19/149 (12%)
Query: 41 DYYFDSYAHF--GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
Y +A + KD + + +LD+ CGTG K
Sbjct: 2 HMYEVDHADVYDLFYLGRGKDYAAEASDIAD-LVRSRTPEASSLLDVACGTGTHLEHFTK 60
Query: 99 SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
G+E S +++ +A++ + T+ +G + + L +K ++S M
Sbjct: 61 EF-GDTAGLELSEDMLTHARKRLPD------ATLHQGDMRDFRLG---RKFSAVVS--MF 108
Query: 158 YCLFY---ESMLDTVLYARDKWLATNGLL 183
+ Y L + + + L G++
Sbjct: 109 SSVGYLKTTEELGAAVASFAEHLEPGGVV 137
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 50.3 bits (120), Expect = 7e-07
Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSG 100
D+Y + A + ++++D T R + + VL++ G G L+ G
Sbjct: 49 DFYDEGAAD--TYRDLIQDADGTSEARE--FATRTGPVSGPVLELAAGMGRLTFPFLDLG 104
Query: 101 AARVIGIECS-NIVEYAKEIVDKNNLS--DVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
V +E S +++ ++ + + D T+++G + L ++ ++
Sbjct: 105 -WEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD---KRFGTVVISSGS 160
Query: 158 YCLFYESMLDTVLYARDKWLATNGLL 183
E+ + + + L G
Sbjct: 161 INELDEADRRGLYASVREHLEPGGKF 186
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 49.8 bits (119), Expect = 7e-07
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 17/118 (14%)
Query: 41 DYYFDSYAH----FGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFA 96
D + H IH + D + M L + VLD+ G G ++
Sbjct: 4 DKIHHHHHHMYVTSQIHAK-GSDLAKLMQI-------AALKGNEEVLDVATGGGHVANAF 55
Query: 97 AKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
A +V+ + + +I++ A+ ++ N V + G E ++PF ++ I+
Sbjct: 56 APFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ-GDAE--QMPFTDERFHIVTC 109
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 48.8 bits (116), Expect = 1e-06
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 78 KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD----VVTI 131
+ V+D+GCG G L + S ++ G++ S +E A+E +D+ L + +
Sbjct: 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88
Query: 132 LKGKVEEVELPFGIQKVDIIISEWM 156
++G + + F D +
Sbjct: 89 IQGALTYQDKRFH--GYDAATVIEV 111
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 49.1 bits (117), Expect = 1e-06
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
+L KG ++ DIG GTG S+ A G V +E S + + A V
Sbjct: 31 NLPKGSVIADIGAGTGGYSVALANQG-LFVYAVEPSIVMRQQAVVHPQ-------VEWFT 82
Query: 134 GKVEEVELPFGIQKVDIIIS 153
G E L + VD +IS
Sbjct: 83 GYAE--NLALPDKSVDGVIS 100
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 48.4 bits (115), Expect = 1e-06
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 63 TMTYRNSMYHNKHLFK-----GKIVLDIGCGTGILSMFAAK--SGAARVIGIECS-NIVE 114
++T +NS+ + K G V+D CG G + F A RV G + +
Sbjct: 2 SLTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIA 61
Query: 115 YAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+ + NL D VT++K + ++ + V ++
Sbjct: 62 NTTKKLTDLNLIDRVTLIKDGHQNMD-KYIDCPVKAVMF 99
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 49.7 bits (118), Expect = 1e-06
Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 23 QNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTY-RNSMYHNKHLFKGKI 81
Q+ + + + A + DEV Y S +G
Sbjct: 34 QSSADLKTSACKLAAAVPESHRKILAD-------IADEVLEKFYGCGSTLPADGSLEGAT 86
Query: 82 VLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDKNNLSDV-------VTI 131
VLD+GCGTG A+K +VIG++ N +E A++ V+ + V
Sbjct: 87 VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRF 146
Query: 132 LKGKVEEV----ELPFGIQKVDIIISEWM 156
LKG +E + VDI+IS +
Sbjct: 147 LKGFIENLATAEPEGVPDSSVDIVISNCV 175
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 49.1 bits (117), Expect = 1e-06
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 10/86 (11%)
Query: 78 KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIV---DKNNLSDVVTIL 132
+ + D+G G G AA+ A V E S + E+A+ + D S + +L
Sbjct: 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVL 95
Query: 133 KGKVEE-----VELPFGIQKVDIIIS 153
+ V VE + +I
Sbjct: 96 EADVTLRAKARVEAGLPDEHFHHVIM 121
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 48.3 bits (115), Expect = 1e-06
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
+LD+G GTG + A G ++ G+E + +VE A++ VT G + +
Sbjct: 45 ILDVGSGTGRWTGHLASLG-HQIEGLEPATRLVELARQTHPS------VTFHHGTIT--D 95
Query: 141 LPFGIQKVDIIISEWMGYCLFY--ESMLDTVLYARDKWLATNGLLF 184
L ++ + Y L + L L A + G L
Sbjct: 96 LSDSPKRWAGL---LAWYSLIHMGPGELPDALVALRMAVEDGGGLL 138
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 48.7 bits (115), Expect = 2e-06
Identities = 20/127 (15%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIG--IECSNIVEYAKEIVDKNNLSD 127
+ L GK V ++G G G++S+ A +GA +V+ I+ + + ++ +
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANS 130
Query: 128 VVTILKGK-------------VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD 174
+ + + ++ G+Q+ +++ + L + D +L +
Sbjct: 131 CSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVL---LADLLSFHQAHDALLRSVK 187
Query: 175 KWLATNG 181
LA
Sbjct: 188 MLLALPA 194
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 48.4 bits (115), Expect = 2e-06
Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 39 SRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
S D + + K T + + + K + K VLD+GCG G S++ +
Sbjct: 82 SDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-VLDLGCGQGRNSLYLSL 140
Query: 99 SGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
G V + + + + E +K NL+ ++ + + + D I+S +
Sbjct: 141 LG-YDVTSWDHNENSIAFLNETKEKENLN--ISTALYDINAANIQ---ENYDFIVSTVVF 194
Query: 158 YCL 160
L
Sbjct: 195 MFL 197
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 46.7 bits (111), Expect = 3e-06
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 46 SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGA-ARV 104
S A G ++ K VR + + + DIG G+G +++ +S
Sbjct: 1 SNATDG---QLTKQHVRALAI-----SALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTA 52
Query: 105 IGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYE 163
+ E S E +SD ++ D+I +G L
Sbjct: 53 VCFEISEERRERILSNAINLGVSD-RIAVQQGAPRA-FDDVPDNPDVIF---IGGGLTAP 107
Query: 164 SMLDTVLYA 172
+
Sbjct: 108 GVFAAAWKR 116
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 47.1 bits (112), Expect = 5e-06
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 74 KHLFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+ +LD+G GTG+LS K A ++ S ++E AK + + V
Sbjct: 40 SVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKN---RFRGNLKVKY 96
Query: 132 LKGKVEEVELPFGIQKVDIIIS 153
++ + + +K D+++S
Sbjct: 97 IEADYSKYDFE---EKYDMVVS 115
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 46.5 bits (110), Expect = 6e-06
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 78 KGKIVLDIGCGTGILS-MFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDV----VTI 131
K V+D+GCG G L + ++ G++ +++E AK+ + + L ++ +++
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 132 LKGKVEEVELPFGIQKVDIIISEWM 156
+ + D +
Sbjct: 89 FQSSLV--YRDKRFSGYDAATVIEV 111
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 46.0 bits (109), Expect = 6e-06
Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILK 133
+ +L + G G + F A G V ++ S++ + AK++ + + +T ++
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQ 82
Query: 134 GKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+ + + I+ +C S+ + + L G+
Sbjct: 83 SNLA--DFDIVADAWEGIV---SIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 46.6 bits (110), Expect = 6e-06
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNL 125
+ + LD G G G ++ A +E +++E AK +
Sbjct: 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKR---ELAG 138
Query: 126 SDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARD--KWLATNGLL 183
V + +E LP D+I+ +W Y + D V + + + L NG +
Sbjct: 139 MPVGKFILASMETATLPPN--TYDLIVIQW---TAIYLTDADFVKFFKHCQQALTPNGYI 193
Query: 184 F 184
F
Sbjct: 194 F 194
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 47.2 bits (113), Expect = 6e-06
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
+L G +LDIGCG G A VIG+ S N + K + D+ + +
Sbjct: 69 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVR 127
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 46.8 bits (112), Expect = 7e-06
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILK 133
L G +LD+GCG G M A + V+G+ S N + +++V + +L
Sbjct: 61 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL 120
Query: 134 GKVEEVELPFGIQKVDIIIS 153
E+ + P D I+S
Sbjct: 121 AGWEQFDEPV-----DRIVS 135
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 46.7 bits (112), Expect = 7e-06
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVE 140
V DIG G+G + + AK A V + S+ VE A++ +++ +SD + KG+ E
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE-P 185
Query: 141 LPFGIQKVDIIIS 153
+++I+S
Sbjct: 186 FKEKFASIEMILS 198
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 46.1 bits (109), Expect = 7e-06
Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 15/106 (14%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
VL++ GTG + + RV ++ S ++ A + D V + + +
Sbjct: 50 VLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGR-----HGLDNVEFRQQDLF--D 101
Query: 141 LPFGIQKVDIIISEWMGYCLFY--ESMLDTVLYARDKWLATNGLLF 184
++ D + + + L + + + + +A G++
Sbjct: 102 WTPD-RQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 47.0 bits (111), Expect = 8e-06
Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLS-DVVT 130
H + K+++D+GCG G ++ A+ ++IG + S +++ A+ I + + + V+
Sbjct: 33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVS 92
Query: 131 ILKGKVEEVEL----PFGIQKVDIIIS----EWMGYCLFYESM 165
++ + QK+D+I + W + F S
Sbjct: 93 FKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA 135
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 46.2 bits (109), Expect = 9e-06
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVE 140
VL+ GCG G + AR + S +++ A+ N E
Sbjct: 52 VLEAGCGHGPDAARFGPQA-ARWAAYDFSPELLKLARA-----NAPHADVYEWNGKG--E 103
Query: 141 LPFGI-QKVDIIIS 153
LP G+ +I+S
Sbjct: 104 LPAGLGAPFGLIVS 117
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 46.5 bits (110), Expect = 9e-06
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 27 SKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIG 86
++ V E + D Y D A + RT Y+ + VLD+
Sbjct: 8 TRSLGVAAEGI--PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVA 65
Query: 87 CGTGILSMFAAKSGAARVIGIECS-NIVEYAKE 118
CGTG+ S+ + G V ++ S +++YA +
Sbjct: 66 CGTGVDSIMLVEEG-FSVTSVDASDKMLKYALK 97
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 46.8 bits (112), Expect = 9e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
L G +LDIGCG G A + VIG+ S N ++++ + + +L
Sbjct: 87 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVL 145
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 46.3 bits (110), Expect = 9e-06
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
G+ +LD+GCGTG L+ A+SG A V+G + + ++E A++ N +
Sbjct: 57 PGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQ-----NYPH-LHFDVADA 109
Query: 137 EEVELPFGIQKVDIIIS 153
+ +D + S
Sbjct: 110 R--NFRVD-KPLDAVFS 123
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 45.9 bits (109), Expect = 1e-05
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
+ + GK + DIGCGTG ++ A V G++ S ++E A+E + N V
Sbjct: 29 EQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRH--VDFW 84
Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFY---ESMLDTVLYARDKWLATNGLL 183
+ E+ELP + VD I + L Y E+ + + + L G L
Sbjct: 85 VQDMRELELP---EPVDAITI--LCDSLNYLQTEADVKQTFDSAARLLTDGGKL 133
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 46.1 bits (109), Expect = 1e-05
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137
+ L++G GTG +++ G R I ++ ++E ++ + + V +++
Sbjct: 40 EPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRK--VQVVQADAR 96
Query: 138 EVELPFGIQKVDIIIS 153
+P + V +I
Sbjct: 97 --AIPLPDESVHGVIV 110
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 46.8 bits (112), Expect = 1e-05
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEY----AKEIVDKNNLSDVVTI 131
L +G+ +LD+ G G ++ AK V G + E+ A+ V+ NN+ D
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFD---SNEFAIEMARRNVEINNV-DAEFE 342
Query: 132 LKGKVEEVELPFGIQKVDIII 152
+ E ++ D +I
Sbjct: 343 VASDREVS-----VKGFDTVI 358
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 45.6 bits (108), Expect = 1e-05
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
L G +L++GCG G + +G V + S + A + + + +
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAAG-FDVDATDGSPELAAEASRRLGRPVRTMLFH-- 95
Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+L D + + + + L VL + L GL +
Sbjct: 96 -------QLDAI-DAYDAVWAHACLLHVPRDE-LADVLKLIWRALKPGGLFY 138
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 45.4 bits (107), Expect = 1e-05
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTI 131
L +L +GCG LS G V ++ S +V + +
Sbjct: 37 EPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQA---CYAHVPQLRW 93
Query: 132 LKGKVEEVELPFGIQKVDIIIS 153
V +L F D+++
Sbjct: 94 ETMDVR--KLDFPSASFDVVLE 113
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 45.6 bits (109), Expect = 1e-05
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 78 KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKG 134
G++ L+IG G + M A K +V E EYA+ +++NN + + G
Sbjct: 55 GGEVALEIGTGHTAMMALM-AEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG 113
Query: 135 KVEEVELPFGIQKVDIIIS 153
+ + D+I S
Sbjct: 114 GIIK---GVVEGTFDVIFS 129
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 45.2 bits (107), Expect = 1e-05
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 26/140 (18%)
Query: 63 TMTYRNSMYHNK---------------HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGI 107
M R+ Y + K LD+GCG G S++ A +G V
Sbjct: 2 AMVIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG-YDVDAW 60
Query: 108 ECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY--ES 164
+ + + + I NL ++ T + + + ++ D I+S L +
Sbjct: 61 DKNAMSIANVERIKSIENLDNLHTRV-VDLNNLTFD---RQYDFILS---TVVLMFLEAK 113
Query: 165 MLDTVLYARDKWLATNGLLF 184
+ ++ + G
Sbjct: 114 TIPGLIANMQRCTKPGGYNL 133
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 45.5 bits (108), Expect = 2e-05
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
+L + +LDIGCG+G +S+ A G V GI+ + + A+ L+
Sbjct: 26 NYLQEDDEILDIGCGSGKISLELASKG-YSVTGIDINSEAIRLAETAARSPGLNQ---KT 81
Query: 133 KGKVEEV-----ELPFGIQKVDIII 152
GK E L F D +
Sbjct: 82 GGKAEFKVENASSLSFHDSSFDFAV 106
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 44.6 bits (106), Expect = 2e-05
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDV-VTILKGK 135
K +LD+GCG G++ + A + + ++ AKE + NNL + + ++
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 136 VEEVELPFGIQKVDIIIS 153
+ E +K + II+
Sbjct: 111 LYENVKD---RKYNKIIT 125
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 44.8 bits (106), Expect = 2e-05
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 50 FGIHEE-------MLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFAAKSGA 101
G E + K +R +T +G+++ DIG G+G +S+ +G
Sbjct: 25 PGRPESAFAHDGQITKSPMRALTL------AALAPRRGELLWDIGGGSGSVSVEWCLAG- 77
Query: 102 ARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEV--ELP 142
R I IE +E ++ +D LS + ++G +LP
Sbjct: 78 GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 45.6 bits (107), Expect = 2e-05
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 70 MYHNKHLFKGKIVLDIGCGT-GILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSD 127
+G+ + IG G + + + RV +E +I E ++++++ +
Sbjct: 114 EAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG 173
Query: 128 V 128
V
Sbjct: 174 V 174
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 45.2 bits (107), Expect = 4e-05
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
K + G VLD+ TG ++ AA +GA VIGI+ S +E AKE N + D + +
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272
Query: 133 KGKVEEV--ELPFGIQKVDIII 152
G E +L +K DI++
Sbjct: 273 VGSAFEEMEKLQKKGEKFDIVV 294
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 45.2 bits (106), Expect = 4e-05
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
++D GCG+G L +IG++ S + A +++ + +
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 135 KVEE---VELPFGIQKVDIIISEWM 156
+ + +E + VDI +
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEV 805
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 44.1 bits (104), Expect = 4e-05
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 78 KGKIVLDIGCGTGILS-MFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
+ D+GCG G + + + G + GI+ +++E A + L + K
Sbjct: 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAAD-----RLPN-TNFGKAD 86
Query: 136 VEEVELPFGIQKVDIIIS 153
+ QK D++ +
Sbjct: 87 LA--TWKPA-QKADLLYA 101
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 43.6 bits (102), Expect = 6e-05
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 12/135 (8%)
Query: 70 MYHNKHLFKGKIVLDIGCGTG-ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSD 127
+ + + +DIG G I + A + E ++ YAK+ V++NNLSD
Sbjct: 57 GHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSD 116
Query: 128 VVTILKGKVEEVELP----FGIQKVDIIISEWMGYCLFYESMLD--TVLYARDKWLATNG 181
++ ++K + + + D + F+ + L+ V + +
Sbjct: 117 LIKVVKVPQKTLLMDALKEESEIIYDFCMC----NPPFFANQLEAKGVNSRNPRRPPPSS 172
Query: 182 LLFPDKASLFICGIE 196
+ + G E
Sbjct: 173 VNTGGITEIMAEGGE 187
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 43.5 bits (102), Expect = 7e-05
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 13/149 (8%)
Query: 39 SRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK 98
+ D Y H I + + + + LD G G G ++
Sbjct: 44 TVDGMLGGYGH--ISSIDINS--SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLL 99
Query: 99 SGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMG 157
V ++ + + AK + + V ++ + D+I +W
Sbjct: 100 PLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQ--DFTPEPDSYDVIWIQW-- 154
Query: 158 YCLFYESMLDTVLYARD--KWLATNGLLF 184
+ + + + R L NG++
Sbjct: 155 -VIGHLTDQHLAEFLRRCKGSLRPNGIIV 182
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics,
structural genomics consortium; HET: SAH; 1.86A {Homo
sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A*
1p1c_A* 1p1b_A* 1khh_A*
Length = 236
Score = 43.3 bits (101), Expect = 7e-05
Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 9/138 (6%)
Query: 18 SKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEE--MLKDEVRTMTYRNSMYHNKH 75
S PS + EN + Y + H I + M + E M + +K
Sbjct: 2 SAPSATPIFAPGENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSK- 60
Query: 76 LFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
G VL++G G I + ++ IEC+ + + ++ + V LKG
Sbjct: 61 ---GGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKG 115
Query: 135 KVEEVELPFGIQKVDIII 152
E+V D I+
Sbjct: 116 LWEDVAPTLPDGHFDGIL 133
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 42.5 bits (100), Expect = 9e-05
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 10/136 (7%)
Query: 54 EEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NI 112
M+K R + + L IV+D G G + F A + +V +
Sbjct: 2 NAMIK---RPIHMSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQA 56
Query: 113 VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESML-DTVLY 171
+ + + + + IL G + I ++ T L
Sbjct: 57 LGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLE 116
Query: 172 ARDK---WLATNGLLF 184
A +K L G L
Sbjct: 117 AIEKILDRLEVGGRLA 132
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 43.9 bits (104), Expect = 9e-05
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLS-DVVTI 131
+ + K VL+ TG ++ A G ++V+ ++ S ++ A++ V+ N L
Sbjct: 216 RRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEF 275
Query: 132 LKGKVEEV--ELPFGIQKVDIII 152
++ V ++ +K D+I+
Sbjct: 276 VRDDVFKLLRTYRDRGEKFDVIV 298
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 43.1 bits (101), Expect = 1e-04
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 49 HFGIHEEMLKDEVRTMTYRNSMYHNKH---------LFKGKIVLDIGCGTGILSMFAAKS 99
F I + D + M + H K + G +++ G G+G L++F A
Sbjct: 55 EFKILRPRIVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANI 114
Query: 100 GAA--RVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
RV+ E + + A E + D VTI K++++ + VD +I
Sbjct: 115 VGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI---KLKDIYEGIEEENVDHVI 167
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 42.7 bits (100), Expect = 1e-04
Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVV 129
+ L GCG G + A V+G++ S + A E + ++
Sbjct: 59 LVDTSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYF 117
Query: 130 TILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+ +K V + D+I +++ +C M + + L +G L
Sbjct: 118 SFVKEDVFTWRPT---ELFDLIF-DYVFFCAIEPEMRPAWAKSMYELLKPDGELI 168
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 43.6 bits (102), Expect = 1e-04
Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN-----NL 125
Y ++ + +G V+D+ G GI + ++ I IE + N N
Sbjct: 86 YKSRFIREGTKVVDLTGGLGIDFIALMSKA-SQGIYIE---RNDETAVAARHNIPLLLNE 141
Query: 126 SDVVTILKGKVEEVELPFGIQKVDIIISEWM 156
V IL G +E D I +
Sbjct: 142 GKDVNILTGDFKEYLPLIKTFHPDYIYVDPA 172
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 43.3 bits (103), Expect = 1e-04
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKV 136
VLD+ CG G ++ A AA V+G+E +VE ++ N L + VT +
Sbjct: 286 PEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENL 343
Query: 137 EEV--ELPFGIQKVDIII 152
EE + P+ D ++
Sbjct: 344 EEDVTKQPWAKNGFDKVL 361
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 72/456 (15%), Positives = 140/456 (30%), Gaps = 140/456 (30%)
Query: 2 SSRIISRSGYDAKSSNSKPSQQNGDS------KDENVQCEDMT------SRDYYFD---- 45
+ +I ++ A+ +P + +S + N Q + + D YF+
Sbjct: 119 TKELI-KNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRD 175
Query: 46 ---SYAHF-----GIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGC---------G 88
+Y E L + +RT ++ +G L+I
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-----QG---LNILEWLENPSNTPD 227
Query: 89 TGILSMFAAKSGAARVIGI-ECSNIVEYAKEI-VDKNNLSDVVTILKGKVEEVELPFGIQ 146
L S +IG+ + ++ V AK + L + G + + I
Sbjct: 228 KDYLL-SIPISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 147 KVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGL----LFPDKASLFICGIEDLQGGQ 202
+ D W F+ S+ + L G+ +P+ + L+
Sbjct: 285 ETD----SWES---FFVSVRKAI-----TVLFFIGVRCYEAYPNTSL----PPSILEDSL 328
Query: 203 DHVVGQCVRVLFPDKAS--LFICGIEDRQYKEDKITWWDNVYGFDMSCIKKIAIKEPLVD 260
++ G S L I + Q +D + N + K++ I LV+
Sbjct: 329 ENNEGV---------PSPMLSISNLTQEQV-QDYVN-KTNSHL---PAGKQVEI--SLVN 372
Query: 261 VVDPKQ-VVTSSCLLKEIDLYTITKADLSFTSPFTLQVRR----NDYVQALVTFFSVEFS 315
K VV+ LY L +R+ + Q+ + FS
Sbjct: 373 --GAKNLVVSGP----PQSLYG-----------LNLTLRKAKAPSGLDQS-----RIPFS 410
Query: 316 KCHKRIGFS------TAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRNNRDL 369
+ +++ FS +P H +H L + + + N +D+
Sbjct: 411 E--RKLKFSNRFLPVASPF-H-SH------LLVP--ASDLINKDLVKNNVSFNA---KDI 455
Query: 370 DFTVEVNFKGE-LCEMSESNDYQVDDRLAALGLRDR 404
V F G L +S S + +R+ +R
Sbjct: 456 QIPVYDTFDGSDLRVLSGS----ISERIVDCIIRLP 487
Score = 37.3 bits (86), Expect = 0.013
Identities = 79/503 (15%), Positives = 146/503 (29%), Gaps = 179/503 (35%)
Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI--IISEWMGY 158
+ +G Y +V+ + + +L + E E + ++ DI + ++
Sbjct: 61 VGKFLG--------YVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDIHALAAK---- 107
Query: 159 CLFYESMLDTVLYARDKWL----------------ATNGLLFP----DKASLF-ICG--- 194
DT L + + +N LF A L I G
Sbjct: 108 ---LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 195 -----IEDLQGGQD---HVVGQCVRVLF----------PDKASLFICGIEDRQYKEDKIT 236
E+L+ +VG ++ D +F G+ + +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-------NILE 217
Query: 237 WWDNVYGFDMSCIKKIAIKEPLVDVVDPKQVVTSSCLLKEIDL-----YTITKADLSFTS 291
W +N P D + + SC L I + Y +T L FT
Sbjct: 218 WLEN------------PSNTPDKDYLLSIPI---SCPL--IGVIQLAHYVVTAKLLGFT- 259
Query: 292 PFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPEAHYTHWKQTVFYLNEHLTVK--- 348
P L Y++ + + + A + W+ F+++ +
Sbjct: 260 PGEL----RSYLKGATG--------HSQGLVTAVAIAETDS-WES--FFVSVRKAITVLF 304
Query: 349 ----KGEEVVGSFGMQPNPRNNRDLDFTVEVNFKGELCEMSESNDYQVDDRLAALGLRDR 404
+ E + + P+ L+ ++E N +G M L+ L +
Sbjct: 305 FIGVRCYEAYPNTSLPPS-----ILEDSLENN-EGVPSPM-----------LSISNL-TQ 346
Query: 405 DCMYTKL-YTIVHAPFTLQV-------RRNDYV-----QALVTFFSVEFSKCH------- 444
+ + + T H P QV +N V Q+L ++ K
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKN-LVVSGPPQSLYG-LNLTLRKAKAPSGLDQ 404
Query: 445 KRIGFS-------------TAPEAHYTHWKQTVFYLNEHLTVKKGEEVVGSFGMQPNPRN 491
RI FS +P H +H L + + + N
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPF-H-SH------LLVP--ASDLINKDLVKNNVSFNA-- 452
Query: 492 NRDLDFTVEVNFKGE-LCEMSES 513
+D+ V F G L +S S
Sbjct: 453 -KDIQIPVYDTFDGSDLRVLSGS 474
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 41.7 bits (98), Expect = 4e-04
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
K + +V+D+ G G S+ A ++ I+ + + +E K+ + N L + +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSIACKN--AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPI 248
Query: 133 KGKVEEVE 140
V EV+
Sbjct: 249 LSDVREVD 256
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 41.6 bits (98), Expect = 4e-04
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 82 VLDIGCGTGILSMFAAK-SGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEV 139
VLD+GCG G+LS+ A+ S R+ + S VE ++ + N + V EV
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV-FSEV 258
Query: 140 ELPFGIQKVDIIIS 153
+ F D+IIS
Sbjct: 259 KGRF-----DMIIS 267
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 41.2 bits (96), Expect = 4e-04
Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 21/161 (13%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKI---VLDIGCGTG-----IL 92
Y +S+ F H ++ + + K +L IG G G IL
Sbjct: 13 GKYVESFRRFLNHSTE-HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQIL 71
Query: 93 SMFAAK--SGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI--LKGKVEEVE----LPF 143
S A+ +E S + KE+V K + + V K E +
Sbjct: 72 SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131
Query: 144 GIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
+QK D I M L+Y + L L TN +
Sbjct: 132 ELQKWDFIH---MIQMLYYVKDIPATLKFFHSLLGTNAKML 169
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 41.4 bits (98), Expect = 5e-04
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLS-DVVTI 131
GK VL++ T S+ AA GA ++ + + + N+L +
Sbjct: 208 NGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQL 267
Query: 132 LKGKV 136
+ V
Sbjct: 268 VVMDV 272
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 40.6 bits (96), Expect = 5e-04
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVV 129
L G VL+IG G G + + + G V+ IE + E A+ + K +V+
Sbjct: 74 DLKPGMKVLEIGTGCGYHAAVTAEIVGEDG--LVVSIERIPELAEKAERTLRKLGYDNVI 131
Query: 130 TIL 132
I+
Sbjct: 132 VIV 134
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 40.6 bits (96), Expect = 5e-04
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLS 126
L +G LD+G G+G + +G +VIGI+ +V+ + V K++ +
Sbjct: 74 QLHEGAKALDVGSGSGILTACFARMVGCTG--KVIGIDHIKELVDDSVNNVRKDDPT 128
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 40.7 bits (96), Expect = 6e-04
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGA---ARVIGIEC-SNIVEYAKEIVDKNNLS 126
HL G +LD+G G+G + G R++GIE + +V +K ++ ++ S
Sbjct: 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS 140
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 41.0 bits (96), Expect = 6e-04
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 78 KGKIVLDIGCGTG-ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGK 135
G VLD CG+G IL A + + +IGIE + A+ + D + ++G
Sbjct: 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD 276
Query: 136 VEEVELPFGIQKVDIIIS 153
++ VD IS
Sbjct: 277 ATQLSQYVD--SVDFAIS 292
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 41.0 bits (95), Expect = 8e-04
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK-SGAARVIGIE---------CSNI 112
+ M + + +D+G G G + + A + G+E +
Sbjct: 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD 217
Query: 113 VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
E+ K + T+ +G E I +I
Sbjct: 218 REFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF 257
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 40.2 bits (93), Expect = 9e-04
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 78 KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-----NIVEYAKEIVDKNNLSDVVT 130
++ +D+G G G I + A IGI+ +I + + K LS+VV
Sbjct: 24 FDRVHIDLGTGDGRNIYKL-AINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV- 81
Query: 131 ILKGKVEEVELPF 143
+ E +
Sbjct: 82 FVIAAAESLPFEL 94
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 40.4 bits (94), Expect = 9e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIE-CSNIVEYAKEIVDKNNLSDVVTIL 132
+ +G ++D G G+G + A++ + +V E + A+ + K L + VTI
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIK 169
Query: 133 KGKVEE 138
+ E
Sbjct: 170 VRDISE 175
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 40.7 bits (95), Expect = 9e-04
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKV 136
+G+ VLD+G G G L++ A+ G A V+G+E V ++ ++ N L +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVD 290
Query: 137 EEVELPFGIQKVDIIIS 153
E + + DII++
Sbjct: 291 EALTEE---ARFDIIVT 304
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 40.5 bits (95), Expect = 0.001
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGA--ARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKG 134
G VLD G+G +++ AA + + V + + A+E + LS + L+
Sbjct: 203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSW-IRFLRA 261
Query: 135 KVEEVELPFGIQKVDIIIS 153
+ F +VD I++
Sbjct: 262 DARHLPRFFP--EVDRILA 278
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 40.3 bits (94), Expect = 0.001
Identities = 12/76 (15%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 82 VLDIGCGTGILSMFAAK-SGAARVIGIECSNI-VEYAKEIVDKNNLSDV--VTILKGKVE 137
++D+GCG G++ + + A+V+ ++ S + V ++ V+ N + +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 138 EVELPFGIQKVDIIIS 153
P + + ++
Sbjct: 286 SGVEP---FRFNAVLC 298
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 40.1 bits (94), Expect = 0.001
Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 9/122 (7%)
Query: 38 TSRDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL-----FKG-KIVLDIGCGTGI 91
+ + F + F M R S + F + V+D+ G G
Sbjct: 134 SEKPLAFQQESRFAHDTRARDAFNDAMV-RLSQPMVDVVSELGVFARARTVIDLAGGHGT 192
Query: 92 LS-MFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDI 150
+ + + A++ + ++L V + + + G D+
Sbjct: 193 YLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEG-GAADV 251
Query: 151 II 152
++
Sbjct: 252 VM 253
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 39.4 bits (93), Expect = 0.002
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 82 VLDIGCGTG--ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEE 138
+LD+G GTG L++ A++ +I ++ V A+ + + + IL+
Sbjct: 113 ILDLGTGTGAIALAL-ASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFS 170
Query: 139 VELPFGIQKVDIIIS 153
Q+ +I+S
Sbjct: 171 ---ALAGQQFAMIVS 182
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 78 KGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
KG VL+IG GTG ++S + G V+ +E I E AK V++ + +V+ +
Sbjct: 75 KGMRVLEIGGGTGYNAAVMSRVVGEKG--LVVSVEYSRKICEIAKRNVERLGIENVIFVC 132
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 38.8 bits (91), Expect = 0.002
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 20/87 (22%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVV 129
+L G +L++G G+G ++S V IE +VE+AK +++ + +V
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIV----KTDVYTIERIPELVEFAKRNLERAGVKNVH 143
Query: 130 TIL----KGKVEEVELPFGIQKVDIII 152
IL KG + P+ D+II
Sbjct: 144 VILGDGSKGFPPKA--PY-----DVII 163
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 38.6 bits (90), Expect = 0.002
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 79 GKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVE 137
G+ +L++G GTG + + + +G+E S ++ + + T ++ E
Sbjct: 37 GESLLEVGAGTGY---WLRRLPYPQKVGVEPSEAMLAVGRRRAPE------ATWVRAWGE 87
Query: 138 EVELPFGIQKVDIIIS 153
LPF + D+++
Sbjct: 88 --ALPFPGESFDVVLL 101
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 37.9 bits (89), Expect = 0.003
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN----NLSDVVT 130
F G VLD+ G+G L++ A G + + +E + A+ I+ N + T
Sbjct: 28 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRK---AQAIIQDNIIMTKAENRFT 84
Query: 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCL---FYESMLDTVLY--ARDKWLATNGLL 183
+LK + E + + D++ L + + + + A L+ ++
Sbjct: 85 LLKMEAERA-IDCLTGRFDLVF-------LDPPYAKETIVATIEALAAKNLLSEQVMV 134
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 38.9 bits (90), Expect = 0.003
Identities = 7/71 (9%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Query: 63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVD 121
T R + H + + K + +G R+ ++ + ++ ++ +
Sbjct: 157 TTVARVILMHTRGDLENKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAAN 216
Query: 122 KNNLSDVVTIL 132
+ D+
Sbjct: 217 EIGYEDIEIFT 227
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 37.5 bits (87), Expect = 0.004
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 16/82 (19%)
Query: 74 KHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
+ + KIVLD+G TG+++ K V+ + + +E + +D++
Sbjct: 19 REGLEMKIVLDLGTSTGVITEQLRK--RNTVVSTDLNIRALESHRGGNLVR--ADLLC-- 72
Query: 133 KGKVEEVELPFGIQKVDIIISE 154
+ VD+++
Sbjct: 73 ---------SINQESVDVVVFN 85
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 38.2 bits (88), Expect = 0.004
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 12/119 (10%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGK- 135
+ VL I G G A ++ + + E +K N K
Sbjct: 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDY 107
Query: 136 ----------VEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
V V F K +II ++ + F+ TV+ + A+ G +
Sbjct: 108 IQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVL 166
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 38.1 bits (89), Expect = 0.005
Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 44 FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHL--------FKGKIVLDIGCGTGILS-M 94
S + + M+ + + + VLDI G+
Sbjct: 124 ISSEGTLSPEHPVWVQFAKAMS-PMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIA 182
Query: 95 FAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
A + A + G++ ++++E AKE ++ + G EV+ D+++
Sbjct: 183 VAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYG---NDYDLVL 237
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 37.2 bits (86), Expect = 0.006
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 46 SYAHFGIHEE--------MLKDEVRTMTYRNSMYHNK-HLFKGKIVLDIGCGTGILSMFA 96
Y GI ++ + K EVR +T +K L ++ DIG G+ +S+ A
Sbjct: 5 QYPVIGIDDDEFATAKKLITKQEVRAVTL------SKLRLQDDLVMWDIGAGSASVSIEA 58
Query: 97 AK-SGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTI 131
+ R+ +E + + + ++ + K +V +
Sbjct: 59 SNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLV 95
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 37.2 bits (87), Expect = 0.006
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 78 KGKIVLDIGCGTG----ILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTIL 132
VL+IG G+G IL+ V +E + A+ + +L +V T
Sbjct: 77 PQSRVLEIGTGSGYQTAILAHL-----VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH 131
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 37.6 bits (87), Expect = 0.006
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 6 ISRSGY-DAKSSNSKPSQQNGDSKDENVQCEDMTSRDYYFDSYAHFGIHEEMLKDEVRTM 64
+++ GY + K S+ GDS E M +R + D+ + + + ++
Sbjct: 29 MAKEGYVNLLPVQHKRSRDPGDSA------EMMQARRAFLDAGHYQPLRDAIVA------ 76
Query: 65 TYRNSMYHNKHLFKGKIVLDIGCGTG-ILSMFAAKSGAARVIGI 107
+ K VLDIGCG G FA G+
Sbjct: 77 -----QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGL 115
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 37.6 bits (86), Expect = 0.008
Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 15/136 (11%)
Query: 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDK------- 122
+ + VLD+GCG G + K +++ + + V+ ++ +
Sbjct: 27 KVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDS 86
Query: 123 ---NNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFY-ESMLDTVLYARDKWLA 178
+ + ++ + DI +++ + F D +L + L+
Sbjct: 87 EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLS 146
Query: 179 TNGLL---FPDKASLF 191
G P+ L
Sbjct: 147 PGGYFIGTTPNSFELI 162
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 37.0 bits (85), Expect = 0.010
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 76 LFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
L G +L++G G+G +S + + G + +E ++ A + + + V
Sbjct: 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS 167
Query: 133 KGKVEE 138
+ + +
Sbjct: 168 RSDIAD 173
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 37.2 bits (87), Expect = 0.010
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 82 VLDIGCGTGILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEV 139
+L++ CG G S+ A++ RV+ E + V A+ + N++ + V I++ EE
Sbjct: 217 LLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAEEF 273
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 36.8 bits (85), Expect = 0.012
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 63 TMTYRNSMYHNKHLFK-GKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIV 120
+ + K ++V+D+ G G LS+ A G A+VI IE ++ E +
Sbjct: 109 SPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENI 168
Query: 121 DKNNLSDVVTILKG 134
N + D ++
Sbjct: 169 HLNKVEDRMSAYNM 182
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 36.2 bits (83), Expect = 0.014
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 78 KGKIVLDIGCGTG-ILSMFAAKSGAARVIGIE-----CSNIVEYAKEIVDKNNLSDVVTI 131
+VLD+G G G A ++ + V+ ++ I A K L +++
Sbjct: 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLL-Y 85
Query: 132 LKGKVEEVELPFGIQKVDII 151
L E + G+ ++ ++
Sbjct: 86 LWATAERLPPLSGVGELHVL 105
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 36.4 bits (85), Expect = 0.014
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSG--AARVIGIEC-SNIVEYAKEIVDKNNLS 126
L G +D+G G+G +++ + VIG+E ++V ++ E + ++
Sbjct: 77 VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPE 135
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 36.0 bits (84), Expect = 0.015
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 74 KHLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVT 130
K + G V+D+G G+G +S+ A V ++ S + A+ ++ V
Sbjct: 26 KRMPSGTRVIDVGTGSGCIAVSI-ALACPGVSVTAVDLSMDALAVARRNAERFGAV--VD 82
Query: 131 ILKGKVEE--VELPFGIQKVDIIIS 153
E +E + I+S
Sbjct: 83 WAAADGIEWLIERAERGRPWHAIVS 107
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 36.8 bits (86), Expect = 0.015
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 9/80 (11%)
Query: 79 GKIVLDIGCGT-GILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVE 137
G VL IG G G++S+ AAK+ A V+ E+ + + K E
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVVDPAKEE 225
Query: 138 EVELPFGIQK-----VDIII 152
E + I+ ++ I
Sbjct: 226 ESSIIERIRSAIGDLPNVTI 245
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 36.2 bits (83), Expect = 0.018
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 43 YFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS-GA 101
+ + F + + + R M + ++V+D+ G G ++ AK
Sbjct: 86 HKEYGCLFKLDVAKIMWSQGNIEERKRMA--FISNENEVVVDMFAGIGYFTIPLAKYSKP 143
Query: 102 ARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKG 134
V IE + Y E + N L++V+ IL
Sbjct: 144 KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILAD 177
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 36.2 bits (84), Expect = 0.020
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKV 136
+VL++G GTG +++ + A +V+ E +V + V ++ + +L G V
Sbjct: 28 PTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV 86
Query: 137 EEVELPF 143
+ +LPF
Sbjct: 87 LKTDLPF 93
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 36.2 bits (84), Expect = 0.024
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 11/127 (8%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFK------GKIVLDIGCGTGILS- 93
+ Y E ++ + S + K +LDIG TG +
Sbjct: 136 GEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVFSHHPKRLLDIGGNTGKWAT 195
Query: 94 MFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIIS 153
+ V ++ +E ++ + S+ + + + ++PF D +
Sbjct: 196 QCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAV-- 252
Query: 154 EWMGYCL 160
WM L
Sbjct: 253 -WMSQFL 258
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 35.5 bits (81), Expect = 0.027
Identities = 10/47 (21%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIV 113
+ + V D G G S A G V E V
Sbjct: 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASLG-LTVTAFEQHPAV 117
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 34.8 bits (81), Expect = 0.029
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKN----NLSDVVT 130
F G + LD+ G+G L++ A G + I IE + A +++ +N +
Sbjct: 41 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFA---ALKVIKENIAITKEPEKFE 97
Query: 131 ILKGKVEEV--ELPFGIQKVDIIISEWMGYCL---FYESMLDTVLYA--RDKWLATNGLL 183
+ K + + D+++ L + + + + L + L ++
Sbjct: 98 VRKMDANRALEQFYEEKLQFDLVL-------LDPPYAKQEIVSQLEKMLERQLLTNEAVI 150
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 35.5 bits (82), Expect = 0.034
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSD 127
+ VL++ TG+ S+ AA +G A V ++ S + +AKE L
Sbjct: 153 RPLKVLNLFGYTGVASLVAAAAG-AEVTHVDASKKAIGWAKENQVLAGLEQ 202
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 35.2 bits (80), Expect = 0.043
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 40 RDYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKS 99
R+ Y + ++R + + G+ ++DIG G + + +A S
Sbjct: 37 RNNYAPPRGDLCNPNGVGPWKLRCLAQTFA----TGEVSGRTLIDIGSGPTVYQLLSACS 92
Query: 100 GAARVIGIECSN 111
+ +
Sbjct: 93 HFEDITMTDFLE 104
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 34.9 bits (80), Expect = 0.048
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAK-----SGAARVIGI----ECSNIVEYAKEIVDKNNL 125
++ V+D+GCG G +AA +G + N+ I+ +
Sbjct: 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDK 130
Query: 126 SDVVTILKGKV 136
+D+ + K
Sbjct: 131 TDIHRLEPVKC 141
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 34.4 bits (78), Expect = 0.050
Identities = 17/122 (13%), Positives = 32/122 (26%), Gaps = 13/122 (10%)
Query: 63 TMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDK 122
TM + + +++L+ G G ++ AA+ V +E D+
Sbjct: 15 TMPPAEAEALRMAYEEAEVILEYGSGGS--TVVAAELPGKHVTSVES-----------DR 61
Query: 123 NNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGL 182
+ L I DI + G+ + Y W
Sbjct: 62 AWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFR 121
Query: 183 LF 184
Sbjct: 122 HP 123
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 34.8 bits (79), Expect = 0.054
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 62 RTMTYRNSMYHNKHLFKGKIVLDIGCGTGILSMFAAK--SGAARVIGIECS-NIVEYAKE 118
R + Y K L + V D +GI ++ S + + S +E KE
Sbjct: 36 RDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKE 95
Query: 119 IVDKNNL-SDVVTILKGKVEEVELPFGIQKVDIIISEWMGYCL-FYESMLDTV 169
NN+ D I + D + + G + F ES+ ++
Sbjct: 96 NFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFIESVALSM 148
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 34.8 bits (79), Expect = 0.062
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKS--GAARVIGIECS-NIVEYAKEIVDK---- 122
+ + G VL+ G G+G +S+F +K+ RVI E + + AK+
Sbjct: 97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 156
Query: 123 ------NNLSDVVTILKGKVEEVELPFGIQKVD 149
D V + + D
Sbjct: 157 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFD 189
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 34.6 bits (80), Expect = 0.064
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 31 NVQCEDMTSRDY-YFDSYAHF-GIHEEM---LKDEVRTMTYRNSMYHNKHLFKGKIVLDI 85
VQ + RD + + Y + M R +++I
Sbjct: 61 MVQLTEEVPRDLMFHEVYPYHSSGSSVMREHFAMLARDFLATEL------TGPDPFIVEI 114
Query: 86 GCGTGILSMFAAKSGAARVIGIE-CSNIVEYAKE 118
GC GI+ ++G R +G E S + A+E
Sbjct: 115 GCNDGIMLRTIQEAG-VRHLGFEPSSGVAAKARE 147
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 34.8 bits (79), Expect = 0.065
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 63 TMTYRNSMYHNKHLFKGKIVLDIGCGTG-ILSMFAAKSGAARVIGIE 108
+ + +Y L KG +D+G G G + A + G A G E
Sbjct: 227 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCE 273
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 34.6 bits (80), Expect = 0.071
Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 79 GKIVLDIGCGT-GILSMFAAKS---GAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG 134
+G G+ G+L++ K G + + + + +I+++ + + V +
Sbjct: 173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTP 232
Query: 135 KVEEVELPFGIQKVDIII 152
+ ++ +D I
Sbjct: 233 VEDVPDVYEQ---MDFIY 247
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 33.5 bits (76), Expect = 0.12
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 71 YHNKHLFKGKIVLDIGCGTGILSMFAAKSG-AARVIGIECS--NIVEYAKEIVDKNNLSD 127
+ + +L +G G A V IE + + E ++ N
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN--- 123
Query: 128 VVTILKGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLDTVLYARDKWLATNGLLF 184
++ IL + E ++KVD+I + + + ++ +L G
Sbjct: 124 IIPILGDANKPQEYANIVEKVDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGM 175
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 33.8 bits (78), Expect = 0.13
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKV 136
G+ VLD+ G ++ AA+ A + ++ + + + L V I G+
Sbjct: 214 PGERVLDVYSYVGGFALRAAR-KGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEA 270
Query: 137 ----EEVELPFGIQKVDIII 152
+E PF ++
Sbjct: 271 LPTLRGLEGPF-----HHVL 285
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 32.7 bits (74), Expect = 0.22
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 21/124 (16%)
Query: 36 DMTSRDYY---FDSYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLF--------KGKIVLD 84
T D Y F + + ++ + L +G ++D
Sbjct: 4 GFTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLK--FNLECLHKTFGPGGLQGDTLID 61
Query: 85 IGCGTGILSMFAAKSGAARVIGIECS--NIVEYAK------EIVDKNNLSDVVTILKGKV 136
IG G I + AA + + + N E K D L+G
Sbjct: 62 IGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNS 121
Query: 137 EEVE 140
E
Sbjct: 122 GRWE 125
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 32.6 bits (75), Expect = 0.23
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIE 108
L KG+ VL+IG G G +++ +V+ +E
Sbjct: 67 DLHKGQKVLEIGTGIGYYTALIAEI-----VDKVVSVE 99
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 32.6 bits (74), Expect = 0.24
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAK-----SGAARVIGI----ECSNIVEYAKEIVDKNNL 125
+L VLD+GCG G S +AA S +GI + ++ IV +
Sbjct: 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDK 137
Query: 126 SDVVTILKGKV 136
S+V T+
Sbjct: 138 SNVFTMPTEPS 148
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 32.4 bits (73), Expect = 0.30
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 41 DYYFDSYAHFGIHEEMLKDEVRTMTYRNSMYH-NKHLFKGKIVLDIGCGTGILSMFAAKS 99
Y + Y FG ++E+ +N KG++++DIG G I + +A
Sbjct: 19 RDYLEKYYSFG-SRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACE 77
Query: 100 GAARVIGIECS--NIVEYAK 117
+I + + N+ E K
Sbjct: 78 SFTEIIVSDYTDQNLWELQK 97
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 32.3 bits (73), Expect = 0.30
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVV 129
+ +L K K VL+ G G+G L ++ + A++ + K NL V
Sbjct: 83 IALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNV 142
Query: 130 TILKGKVEEVELPFG 144
++ E+P G
Sbjct: 143 KFFNVDFKDAEVPEG 157
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 31.8 bits (73), Expect = 0.35
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGI 107
GK LDIG TG + ++GA V +
Sbjct: 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYAL 66
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 32.0 bits (72), Expect = 0.41
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIV 113
V+D G G + A G RV +E + +V
Sbjct: 88 YLPDVVDATAGLGRDAFVLASVG-CRVRMLERNPVV 122
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 31.9 bits (73), Expect = 0.43
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGI 107
+ I +DIG TG + ++GA V +
Sbjct: 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAV 114
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 32.1 bits (72), Expect = 0.43
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)
Query: 75 HLFKGKIVLDIGCGTGILSM-FAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTIL 132
++ KIVLD TGI + FA ++ A V + S + E K V N ++
Sbjct: 44 NILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESK 103
Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLFYESMLD 167
+ + E I D + F+ LD
Sbjct: 104 GRAILKGEKTIVINHDDANRLMAERHRYFHFIDLD 138
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 31.5 bits (72), Expect = 0.53
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 80 KIVLDIGCGTGI--LSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTILKGKV 136
+VL++G G + M AR++ +E + +++++ L D VTIL G
Sbjct: 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS 119
Query: 137 EEV 139
+++
Sbjct: 120 QDL 122
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 30.9 bits (71), Expect = 0.76
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKN 123
+G V+++G GTG L+ + ++ IE +VE K I D+
Sbjct: 31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDER 77
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 30.9 bits (69), Expect = 0.80
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 12/117 (10%)
Query: 48 AHFGIHEEMLKDEVRTMTYRNSMYHNK---------HLFKGKIVLDIGCGTGILSMFAAK 98
A F + +L D V +M + + K +F G VL+ G G+G L++ +
Sbjct: 60 ALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLR 119
Query: 99 --SGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIII 152
A +VI E E+A+ V + + VD +
Sbjct: 120 AVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV 176
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 31.2 bits (71), Expect = 0.80
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 78 KGKIVLDIGCGTGILSMFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNLSDVVTILKGKV 136
IVL+IGCGTG L++ A +VI I+ S ++ K+ ++ + + +G
Sbjct: 42 SSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGYNN-LEVYEGDA 99
Query: 137 EEVELPF 143
+ P
Sbjct: 100 IKTVFPK 106
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 30.7 bits (69), Expect = 1.1
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 78 KGKIVLDIGCGTGILS-MFAAKSGAARVIGIEC-SNIVEYAKEIVDKNNL 125
+ VLD+ G GI S +F K + +E S++ ++ + + L
Sbjct: 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPL 107
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 30.8 bits (69), Expect = 1.2
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 73 NKHLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE 108
++ L G +D+G G + K V ++
Sbjct: 206 DERLANGMWAVDLGACPGGWTYQLVKRN-MWVYSVD 240
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 30.6 bits (70), Expect = 1.2
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 67 RNSMYHNKHLFKGKIVLDIGCGTGILSMFA---AKSGAARVI-GIECSNIVEYAKEIVDK 122
+ +M + F+GK+ G GTG+ + GA VI + + A++I +
Sbjct: 15 QKAML-PPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ 73
Query: 123 NNLSDVVTI---------LKGKVEEVELPFGIQKVDIII 152
+ V I ++ V E+ G +I+I
Sbjct: 74 TG-NKVHAIQCDVRDPDMVQNTVSELIKVAG--HPNIVI 109
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 30.3 bits (69), Expect = 1.2
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 76 LFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIECSNI--VEYAKEIVDKNNLSDVV 129
+G+ +D+G G G LS+ + A ++ S V + +++ + L + +
Sbjct: 63 YLQGERFIDVGTGPGLPGIPLSIVRPE---AHFTLLD-SLGKRVRFLRQVQHELKLEN-I 117
Query: 130 TILKGKVEEVELPFGIQKVDIIIS 153
++ +VEE D +IS
Sbjct: 118 EPVQSRVEEFP---SEPPFDGVIS 138
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP:
c.66.1.56
Length = 409
Score = 30.8 bits (69), Expect = 1.2
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 5/99 (5%)
Query: 35 EDMTSRDYYFDSY-AHFGIHEEMLKDEVRTMTYRNSMYHNKHLFKGKIVLDIGCGTGILS 93
D S + H E + R + + ++D G G
Sbjct: 182 ADDYSVQTLYAVLNFHLTCEPEYYHEVERPYSTLYFRSGLLRFSDSEKMVDCGASIGESL 241
Query: 94 -MFAAKSG--AARVIGIECS-NIVEYAKEIVDKNNLSDV 128
+ RV IE ++ + ++ + ++
Sbjct: 242 AGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNF 280
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 30.3 bits (69), Expect = 1.5
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIE 108
+L K +VL+IG G GIL+ AK+ A +V IE
Sbjct: 47 NLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIE 79
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+ K +L+IG G + A+ S V IE + +++YAK+ + + + V I
Sbjct: 68 RMNNVKNILEIGTAIGYSSMQF-ASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRI 126
Query: 132 LKG 134
++G
Sbjct: 127 IEG 129
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 29.8 bits (68), Expect = 1.6
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 77 FKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDV----VTIL 132
G VLD+ G+G L + A GAA V+ +E A I N+ + T+
Sbjct: 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRS--AAVI--ARNIEALGLSGATLR 98
Query: 133 KGKVEEVELPFGIQKVDIIISEWMGYCLF----YESMLDTV-----LYARDKWLATNGLL 183
+G V V VD++ Y V + W +
Sbjct: 99 RGAVAAVVAAGTTSPVDLV---------LADPPYNVDSADVDAILAALGTNGWTREGTVA 149
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 29.8 bits (66), Expect = 1.8
Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 74 KHLFKGKIVLDIGCGTGILS-MFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVV 129
++ +LD GCG L+ ++ + + + I+ K +
Sbjct: 45 GNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKY 102
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 29.5 bits (65), Expect = 2.5
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 54 EEMLKDEV---RTMTYRNSMYHNKHLFKGKIVLDIGCGTG---ILSMFAAKSGAARVIGI 107
+M++ V + M + + V D+GC G + + ++IGI
Sbjct: 31 PDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGI 90
Query: 108 ECS-NIVEYAKEIVDKNNLSDVVTILKGKVEEVELPFGIQKVDIIISEWMGY 158
+ S +VE ++ + + V IL + VE I+ ++I +
Sbjct: 91 DNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE----IKNASMVILNFTLQ 138
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 29.3 bits (66), Expect = 2.6
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 12/86 (13%)
Query: 75 HLFKGKIVLDIGCGTG----ILSMFAAKSGAARVIGIECSNI--VEYAKEIVDKNNLSDV 128
VLD+G G G L + + ++ ++ + V + + ++ L
Sbjct: 77 LWQGPLRVLDLGTGAGFPGLPLKIVRPE---LELVLVD-ATRKKVAFVERAIEVLGLKG- 131
Query: 129 VTILKGKVEEVE-LPFGIQKVDIIIS 153
L G+ E + + ++
Sbjct: 132 ARALWGRAEVLAREAGHREAYARAVA 157
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 29.1 bits (66), Expect = 2.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
L + K V+DIG TG ++M A +I + AKE +K LSD + +
Sbjct: 61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGL 120
Query: 132 LKG 134
Sbjct: 121 RLS 123
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 29.2 bits (66), Expect = 2.6
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECSN-IVEYAKEIVDKNNLSDVVTI 131
L + K +L+IG G + M +++ +E + A+E + + VT+
Sbjct: 60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTL 119
Query: 132 LKG 134
+G
Sbjct: 120 REG 122
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 29.2 bits (66), Expect = 2.7
Identities = 11/82 (13%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 78 KGKIVLDIGCGTG----ILSMFAAKSGAARVIGIECSNI-VEYAKEIVDKNNLSDVVTIL 132
+ + D+G G G + + V ++ N + + +++ + L + T
Sbjct: 70 QVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEALQLEN-TTFC 125
Query: 133 KGKVEEV-ELPFGIQKVDIIIS 153
+ E + + DI+ +
Sbjct: 126 HDRAETFGQRKDVRESYDIVTA 147
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 29.1 bits (66), Expect = 2.8
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTGI--LSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+ + +L+IG G + + S RV+ +E S + A+ +++ NL+D V +
Sbjct: 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEV 114
Query: 132 LKG 134
G
Sbjct: 115 RTG 117
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 29.3 bits (66), Expect = 2.8
Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 82 VLDIGCGTGILS-MFAAKSGAARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG 134
++D+G G G +S + ++ E + ++D + +
Sbjct: 194 MIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAV 247
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 28.7 bits (65), Expect = 3.6
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 23/121 (19%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNL------SDV 128
LD G+G L A A +V +E V A ++ K NL S+
Sbjct: 50 PYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTV--ANQL--KKNLQTLKCSSEQ 105
Query: 129 VTILKGKVEE-VELPFGIQKVDIIISEWMGYCL---FYESMLDTVLY--ARDKWLATNGL 182
++ + ++ P D++ L F+ ++ + + + WL N L
Sbjct: 106 AEVINQSSLDFLKQPQNQPHFDVVF-------LDPPFHFNLAEQAISLLCENNWLKPNAL 158
Query: 183 L 183
+
Sbjct: 159 I 159
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 28.8 bits (65), Expect = 3.7
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
+ K +++IG TG L +A +++ + S A++ +N L + + +
Sbjct: 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFL 116
Query: 132 LKG 134
G
Sbjct: 117 KLG 119
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 28.7 bits (65), Expect = 3.8
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 76 LFKGK--IVLDIGCGTG--ILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVT 130
LF I +++G G G + M A ++ IGI+ +++ YA + V + + ++
Sbjct: 37 LFGNDNPIHVEVGSGKGAFVSGM-AKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIK- 94
Query: 131 ILKGKVEEVELPFGIQKVDII 151
+L ++ F ++D +
Sbjct: 95 LLWVDGSDLTDYFEDGEIDRL 115
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 28.8 bits (65), Expect = 3.8
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
L K +++G TG +L + ++ I+ E + K + +
Sbjct: 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF 126
Query: 132 LKG 134
++
Sbjct: 127 IES 129
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 28.8 bits (65), Expect = 4.0
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
L K VL+IG G L+M ++I + N AK+ K +++ +++
Sbjct: 69 SLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISL 128
Query: 132 LKG 134
G
Sbjct: 129 RLG 131
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 28.8 bits (65), Expect = 4.0
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 75 HLFKGKIVLDIGCGTG--ILSMFAAKSGAARVIGIECS-NIVEYAKEIVDKNNLSDVVTI 131
L + K VL++G TG L+M A +VI + + ++A + + +
Sbjct: 57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKL 116
Query: 132 LKG 134
G
Sbjct: 117 RLG 119
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A
{Coxiella burnetii}
Length = 232
Score = 28.7 bits (65), Expect = 4.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 321 IGFSTAPEAHYTHW-KQTVFYLNEHLTVKKGE 351
+G S W KQ V LN LTV+ G+
Sbjct: 106 LGVSIPSHGFLEKWAKQGVLLLNAALTVEAGK 137
Score = 28.7 bits (65), Expect = 4.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 447 IGFSTAPEAHYTHW-KQTVFYLNEHLTVKKGE 477
+G S W KQ V LN LTV+ G+
Sbjct: 106 LGVSIPSHGFLEKWAKQGVLLLNAALTVEAGK 137
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 28.4 bits (64), Expect = 4.3
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 76 LFKGK--IVLDIGCGTG--ILSMFAAKSGAARVIGIE-CSNIVEYAKEIVDKNNLSDVVT 130
+F I +++G G G I M A ++ IGIE +++ A + V + +V
Sbjct: 34 VFGNDNPIHIEVGTGKGQFISGM-AKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVK- 91
Query: 131 ILKGKVEEVELPFGIQKVDII 151
+L + + F +V +
Sbjct: 92 LLNIDADTLTDVFEPGEVKRV 112
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.8 bits (65), Expect = 4.5
Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 45 DSYAHFGIHEEMLKDEVRTMTYRNSMYH---NKHLFKGKIVLDIGCGTG-ILSMFAAKSG 100
D Y++ + + + M N +H F+G+ +D+G G+G +
Sbjct: 131 DFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQAEP 190
Query: 101 AARVIGIECSNIVEYAKEIVDKNNLSDVVTILKG 134
+AR + ++ + A++ + + V+++ G
Sbjct: 191 SARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 28.7 bits (65), Expect = 4.7
Identities = 22/120 (18%), Positives = 36/120 (30%), Gaps = 25/120 (20%)
Query: 46 SYAHFGIHEEMLKDEVRTMTYRNSMYHNKHLF--KGKIVLDIGCGTGILSMFA---AKSG 100
S H H L M F G+I L G GI M A ++G
Sbjct: 3 SSHHHHHHSSGLVPRGSHM---------HPYFSLAGRIALVTGGSRGIGQMIAQGLLEAG 53
Query: 101 AARVI-GIECSNIVEYAKEIVDKN-------NLSDVVTILKGKVEEVELPFGIQKVDIII 152
A I + + A + +LS + + + ++DI++
Sbjct: 54 ARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGA-RRLAQALGELSA--RLDILV 110
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 317
Score = 28.5 bits (63), Expect = 4.8
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 396 LAALGLRDRDCMYTKLY-TIVHAPFTLQVRRNDYVQALVTFFSVEFSKCHKRIGFSTAPE 454
L A+ RD + + V F+ + R F EF +R TAP+
Sbjct: 156 LMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDR-IFGKVFLQEFVDARRRPAIQTAPQ 214
Query: 455 AHYTHW 460
+++
Sbjct: 215 VLFSYR 220
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 28.3 bits (64), Expect = 4.8
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 21/118 (17%)
Query: 75 HLFKGKIVLDIGCGTGILSMFAAKSGAARVIGIECSNIVEYAKEIVDKNNLS----DVVT 130
+ LD G+G L + A AA IE V ++++ NL+
Sbjct: 51 PVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAV--SQQL--IKNLATLKAGNAR 106
Query: 131 ILKGKVEEVELPFGIQKVDIIISEWMGYCL---FYESMLDTVLY--ARDKWLATNGLL 183
++ L +I+ + F +L+ + + WLA L+
Sbjct: 107 VVNSNAMSF-LAQKGTPHNIVF-------VDPPFRRGLLEETINLLEDNGWLADEALI 156
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 28.7 bits (65), Expect = 5.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 78 KGKIVLDIGCGTGI-LS--MFAAKSGAARVIGI 107
GK V+ G G + L + A GA VI I
Sbjct: 195 AGKTVVIQGAG-PLGLFGVVIARSLGAENVIVI 226
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.8 bits (64), Expect = 5.2
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 68 NSMYHNKHLFKGKIVLDIGCGTGIL--SMFAAKSGAARVIGIECSNIVEYAKEIVDKNN 124
+ M +G VL+ C G + A A R +G+E I A ++
Sbjct: 29 DFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE---IDPKALDLPPWAE 84
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 5.5
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 77 FKGKIVLDIGCGTGILSMFAAK---SGAARVIGIECSN----IVEYAKEIVDKNNLSDVV 129
FK K VL G G G + + G A+V+ + S + +Y + I K
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVV-VTTSRFSKQVTDYYQSIYAKYGAKGST 532
Query: 130 TILKGKVEEVELPFGI---QKVDIIISEWMG 157
I+ +PF Q V+ +I E++
Sbjct: 533 LIV--------VPFNQGSKQDVEALI-EFIY 554
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the
core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus}
PDB: 2owq_A 3nt7_C
Length = 218
Score = 28.0 bits (63), Expect = 6.2
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 326 APEAHYTHW-KQTVFYLNEHLTVKKGE 351
Y V N +L+ K GE
Sbjct: 103 IDYKGYNLNIIDGVIPWNYYLSCKLGE 129
Score = 28.0 bits (63), Expect = 6.2
Identities = 7/27 (25%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 452 APEAHYTHW-KQTVFYLNEHLTVKKGE 477
Y V N +L+ K GE
Sbjct: 103 IDYKGYNLNIIDGVIPWNYYLSCKLGE 129
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 27.6 bits (62), Expect = 7.7
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 78 KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIE 108
+ + L+IG G G +++M A +GIE
Sbjct: 34 EAPVTLEIGFGMGASLVAM-AKDRPEQDFLGIE 65
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 27.8 bits (61), Expect = 7.7
Identities = 11/89 (12%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 70 MYHNKHLFKGKIVLDIGCGTGILSMFAAK--SGAARVIGIECSNIVEYAKEIVDK-NNLS 126
+ +G +L +G +G + + R+ G+E + ++++ +
Sbjct: 69 GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP--RVMRDLLTVVRDRR 126
Query: 127 DVVTILKGKVEEVELPFGIQKVDIIISEW 155
++ IL + ++ VD + ++
Sbjct: 127 NIFPILGDARFPEKYRHLVEGVDGLYADV 155
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 27.8 bits (62), Expect = 8.3
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 78 KGKIVLDIGCGTG--ILSMFAAKSGAARVIGIE 108
K + DIGCG G ++ + + ++G+E
Sbjct: 49 KKVTIADIGCGFGGLMIDL-SPAFPEDLILGME 80
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 27.7 bits (62), Expect = 8.4
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 81 IVLDIGCGTG--ILSMFAAKSGAARVIGIE 108
DIGCG G ++ + + ++G+E
Sbjct: 49 EFADIGCGYGGLLVEL-SPLFPDTLILGLE 77
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.412
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,172,870
Number of extensions: 502130
Number of successful extensions: 1238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1172
Number of HSP's successfully gapped: 246
Length of query: 519
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 421
Effective length of database: 3,965,535
Effective search space: 1669490235
Effective search space used: 1669490235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)