BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14675
(105 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DCH|A Chain A, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|B Chain B, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|C Chain C, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|D Chain D, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|E Chain E, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|F Chain F, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|G Chain G, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCH|H Chain H, Crystal Structure Of Dcoh, A Bifunctional, Protein-Binding
Transcription Coactivator
pdb|1DCO|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|B Chain B, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|C Chain C, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|D Chain D, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|E Chain E, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|F Chain F, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|G Chain G, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCO|H Chain H, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator
pdb|1DCP|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|B Chain B, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|D Chain D, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|E Chain E, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|F Chain F, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|H Chain H, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
Length = 104
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 75/98 (76%)
Query: 3 ASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMD 62
A + +LSA+ER L + GW +E RDAI+K++ FK+FN AFGFMTR AL AEK+D
Sbjct: 2 AGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLD 61
Query: 63 HHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
HHPEWFNVYNKV +TLSTH+C GLS +DI LASF++ +
Sbjct: 62 HHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQV 99
>pdb|1DCP|C Chain C, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
pdb|1DCP|G Chain G, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Complexed With Biopterin
Length = 104
Score = 132 bits (331), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 75/98 (76%)
Query: 3 ASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMD 62
A + +LSA+ER L + GW +E RDAI+K++ FK+FN AFGFMTR AL AEK+D
Sbjct: 2 AGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLD 61
Query: 63 HHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
HHPEWFNVYNKV +TLSTH+C GLS +DI LASF++ +
Sbjct: 62 HHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQV 99
>pdb|1RU0|A Chain A, Crystal Structure Of Dcoh2, A Paralog Of Dcoh, The
Dimerization Cofactor Of Hnf-1
pdb|1RU0|B Chain B, Crystal Structure Of Dcoh2, A Paralog Of Dcoh, The
Dimerization Cofactor Of Hnf-1
Length = 105
Score = 132 bits (331), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 76/91 (83%), Gaps = 2/91 (2%)
Query: 9 LSADERLSKLEPILKS-GWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEW 67
L+A+ER +L P LK+ GW + RDAIYKE+ FKNFN+AFGFM+R AL AEKM+HHPEW
Sbjct: 10 LTAEER-DQLIPGLKAAGWSELSERDAIYKEFSFKNFNQAFGFMSRVALQAEKMNHHPEW 68
Query: 68 FNVYNKVQVTLSTHDCNGLSNKDIKLASFMD 98
FNVYNKVQ+TL++HDC GL+ +D+KLA F++
Sbjct: 69 FNVYNKVQITLTSHDCGGLTKRDVKLAQFIE 99
>pdb|3HXA|A Chain A, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|B Chain B, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|C Chain C, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|D Chain D, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|E Chain E, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|F Chain F, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|G Chain G, Crystal Structure Of Dcoh1thr51ser
pdb|3HXA|H Chain H, Crystal Structure Of Dcoh1thr51ser
Length = 104
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 75/98 (76%)
Query: 3 ASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMD 62
A + +LSA+ER L + GW +E RDAI+K++ FK+FN AFGFM+R AL AEK+D
Sbjct: 2 AGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFMSRVALQAEKLD 61
Query: 63 HHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
HHPEWFNVYNKV +TLSTH+C GLS +DI LASF++ +
Sbjct: 62 HHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQV 99
>pdb|1F93|A Chain A, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|B Chain B, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|C Chain C, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
pdb|1F93|D Chain D, Crystal Structure Of A Complex Between The Dimerization
Domain Of Hnf-1 Alpha And The Coactivator Dcoh
Length = 104
Score = 129 bits (325), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 74/98 (75%)
Query: 3 ASASVKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMD 62
A + +LSA+ER L + GW +E RDAI+K++ FK+FN AFGF TR AL AEK+D
Sbjct: 2 AGKAHRLSAEERDQLLPNLRAVGWNELEGRDAIFKQFHFKDFNRAFGFXTRVALQAEKLD 61
Query: 63 HHPEWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
HHPEWFNVYNKV +TLSTH+C GLS +DI LASF++ +
Sbjct: 62 HHPEWFNVYNKVHITLSTHECAGLSERDINLASFIEQV 99
>pdb|3JST|A Chain A, Crystal Structure Of Transcriptional CoactivatorPTERIN
DEHYDRATASE From Brucella Melitensis
pdb|3JST|B Chain B, Crystal Structure Of Transcriptional CoactivatorPTERIN
DEHYDRATASE From Brucella Melitensis
Length = 97
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 25 GWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCN 84
GW+ V+ R+AI + + FK+F+ AFGFM + AL AEK+DHHPEWFN YN+V VTL+TH N
Sbjct: 20 GWQKVDGREAITRSFKFKDFSTAFGFMAQAALYAEKLDHHPEWFNAYNRVDVTLATHSEN 79
Query: 85 GLSNKDIKLASFMDTI 100
G++ DIK+A M+ I
Sbjct: 80 GVTELDIKMARKMNAI 95
>pdb|2V6S|A Chain A, Medium Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6S|B Chain B, Medium Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6T|A Chain A, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
Dehydratase From Toxoplasma Gondii With 7,8-
Dihydrobiopterin
pdb|2V6T|B Chain B, Crystal Structure Of A Complex Of Pterin-4a-Carbinolamine
Dehydratase From Toxoplasma Gondii With 7,8-
Dihydrobiopterin
Length = 106
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 7 VKLSADE-RLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHP 65
+L+A+ RL +L + W L + +I +++ F +FNEA+GFM+R AL A+K+DHHP
Sbjct: 7 ARLAANSARLLQLHKTVPQ-WHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHP 65
Query: 66 EWFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTIIK 102
W+NVYN V V LSTHD GL+ KD LA FMD K
Sbjct: 66 NWYNVYNTVDVELSTHDAAGLTEKDFALAKFMDDAAK 102
>pdb|2V6U|A Chain A, High Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
pdb|2V6U|B Chain B, High Resolution Crystal Structure Of Pterin-4a-
Carbinolamine Dehydratase From Toxoplasma Gondii
Length = 104
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 14 RLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNK 73
RL +L + W L + +I +++ F +FNEA+GFM+R AL A+K+DHHP W+NVYN
Sbjct: 13 RLLQLHKTVPQ-WHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNVYNT 71
Query: 74 VQVTLSTHDCNGLSNKDIKLASFMDTIIK 102
V V LSTHD GL+ KD LA FMD K
Sbjct: 72 VDVELSTHDAAGLTEKDFALAKFMDDAAK 100
>pdb|1USO|A Chain A, Dcoh, A Bifunctional Protein-binding Transcriptional
Coactivator, Pro9leu Mutant
pdb|1USO|B Chain B, Dcoh, A Bifunctional Protein-binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 26 WKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCNG 85
W+ EN + K + F NF EA F R LAE+ +HHP + +V V TH G
Sbjct: 3 WEERENPKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGG 62
Query: 86 LSNKDIKLASFMDTIIK 102
++ KD ++A D +++
Sbjct: 63 VTEKDREMARLTDALLQ 79
>pdb|1USM|A Chain A, Dcoh, A Bifunctional Protein-Binding Transcriptional
Coactivator, Pro9leu Mutant
Length = 80
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 26 WKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPEWFNVYNKVQVTLSTHDCNG 85
W+ EN + K + F NF EA F R LAE+ +HHP + +V V TH G
Sbjct: 3 WEERENLKRLVKTFAFPNFREALDFANRVGALAERENHHPRLTVEWGRVTVEWWTHSAGG 62
Query: 86 LSNKDIKLASFMDTIIK 102
++ KD ++A D +++
Sbjct: 63 VTEKDREMARLTDALLQ 79
>pdb|2EBB|A Chain A, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase (Pterin Carbinolamine Dehydratase) From
Geobacillus Kaustophilus Hta426
Length = 101
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 7 VKLSADERLSKLEPILKSGWKLVENRDAIYKEYLFKNFNEAFGFMTRTALLAEKMDHHPE 66
++L+ +E + LE GWKL + R I K+Y F+++ + F+ R A ++E +HHP
Sbjct: 1 MRLTEEEVQALLEK--ADGWKLADER-WIVKKYRFQDYLQGIEFVRRIAAISENANHHPF 57
Query: 67 WFNVYNKVQVTLSTHDCNGLSNKDIKLASFMDTI 100
Y + V LS+ GL+ D LA D +
Sbjct: 58 ISIDYKLITVKLSSWRAKGLTKLDFDLAKQYDEV 91
>pdb|2PFZ|A Chain A, Crystal Structure Of Dctp6, A Bordetella Pertussis
Extracytoplasmic Solute Receptor Binding Pyroglutamic
Acid
Length = 301
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 25 GWKLVENRDAIYKEYLFKN 43
GWKL + +++ YKE L KN
Sbjct: 239 GWKLSQEKNSWYKEQLAKN 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,869,000
Number of Sequences: 62578
Number of extensions: 97253
Number of successful extensions: 227
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 12
length of query: 105
length of database: 14,973,337
effective HSP length: 70
effective length of query: 35
effective length of database: 10,592,877
effective search space: 370750695
effective search space used: 370750695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)